Read the Docs build information Build id: 268977 Project: cyverse-doi-request-quickstart Version: latest Commit: 876163bb90420d4d05670e62deb38c43f903c3ed Date: 2019-12-13T19:48:44.903757Z State: finished Success: True [rtd-command-info] start-time: 2019-12-13T19:48:45.405024Z, end-time: 2019-12-13T19:48:47.150440Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/CyVerse-learning-materials/DOI_request_quickstart.git . Cloning into '.'... [rtd-command-info] start-time: 2019-12-13T19:48:47.364041Z, end-time: 2019-12-13T19:48:47.407984Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 876163b Update right4me.rst [rtd-command-info] start-time: 2019-12-13T19:48:47.486074Z, end-time: 2019-12-13T19:48:47.505983Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-12-13T19:48:48.531414Z, end-time: 2019-12-13T19:48:51.711302Z, duration: 3, exit-code: 0 python2.7 -mvirtualenv --no-site-packages --no-download New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/latest/bin/python2.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2019-12-13T19:48:51.799572Z, end-time: 2019-12-13T19:48:53.924326Z, duration: 2, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/.cache/pip pip DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. Collecting pip Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) Installing collected packages: pip Found existing installation: pip 19.1.1 Uninstalling pip-19.1.1: Successfully uninstalled pip-19.1.1 Successfully installed pip-19.3.1 [rtd-command-info] start-time: 2019-12-13T19:48:53.997721Z, end-time: 2019-12-13T19:49:04.591853Z, duration: 10, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. 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Walls' version = '1.0' release = '1.0' epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://media.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://media.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("master", "/en/master/"), ("latest", "/en/latest/"), ], 'downloads': [ ("html", "//readthedocs.com/projects/cyverse-doi-request-quickstart/downloads/htmlzip/latest/"), ], 'subprojects': [ ], 'slug': 'cyverse-doi-request-quickstart', 'name': u'DOI_request_quickstart', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://learning.cyverse.org/projects/cyverse-doi-request-quickstart/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/', 'api_host': 'https://readthedocs.com', 'proxied_api_host': 'https://readthedocs.com', 'github_user': 'CyVerse-learning-materials', 'github_repo': 'DOI_request_quickstart', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '876163bb', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2019-12-13T19:49:05.691061Z, end-time: 2019-12-13T19:49:08.159982Z, duration: 2, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 13 source files that are out of date updating environment: 13 added, 0 changed, 0 removed reading sources... [ 7%] Additional/doi_faq reading sources... [ 15%] Additional/naming reading sources... [ 23%] Additional/right4me reading sources... [ 30%] Contributors_maintainers /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/latest/lib/python2.7/site-packages/recommonmark/parser.py:65: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 38%] License reading sources... [ 46%] README reading sources... [ 53%] after reading sources... [ 61%] before reading sources... [ 69%] index reading sources... [ 76%] metadata reading sources... [ 84%] organize reading sources... [ 92%] slides/README reading sources... [100%] submit /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:10: WARNING: Title underline too short. DOI Frequently Asked Questions ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:12: WARNING: Title underline too short. Why should I publish my data in CyVerse Curated Data? =================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:32: WARNING: Title underline too short. Can I publish to the Data Commons if my data is not static and curated by CyVerse? ============================================================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:32: WARNING: Title underline too short. Can I publish to the Data Commons if my data is not static and curated by CyVerse? ============================================================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:38: WARNING: Title underline too short. What is a DOI ? =========== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:38: WARNING: Title underline too short. What is a DOI ? =========== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:44: WARNING: Title underline too short. Do I need to contact CyVerse before requesting a DOI? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:44: WARNING: Title underline too short. Do I need to contact CyVerse before requesting a DOI? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:52: WARNING: Title underline too short. How much does a CyVerse permanent identifier cost? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:52: WARNING: Title underline too short. How much does a CyVerse permanent identifier cost? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:58: WARNING: Title underline too short. How long will it take to obtain a permanent identifier and publish my data? ========================================================================= /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:58: WARNING: Title underline too short. How long will it take to obtain a permanent identifier and publish my data? ========================================================================= /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:70: WARNING: Title underline too short. How small or big should my data be to be published? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:70: WARNING: Title underline too short. How small or big should my data be to be published? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:76: WARNING: Title underline too short. What is the policy for submitting compressed data to CyVerse Curated Data? ======================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:76: WARNING: Title underline too short. What is the policy for submitting compressed data to CyVerse Curated Data? ======================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:82: WARNING: Title underline too short. Can I publish data in CyVerse if I am not a CyVerse user? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:82: WARNING: Title underline too short. Can I publish data in CyVerse if I am not a CyVerse user? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:88: WARNING: Title underline too short. How secure is the data in the Curated Data site? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:88: WARNING: Title underline too short. How secure is the data in the Curated Data site? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:94: WARNING: Title underline too short. What is CyVerse Data Commons? long-term commitment to hosting public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:94: WARNING: Title underline too short. What is CyVerse Data Commons? long-term commitment to hosting public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:105: WARNING: Title underline too short. How can I make it easier for people to give me (and my co-creators) credit for using my dataset? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:105: WARNING: Title underline too short. How can I make it easier for people to give me (and my co-creators) credit for using my dataset? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:113: WARNING: Title underline too short. Whom do I choose for the creator versus contributor? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:113: WARNING: Title underline too short. Whom do I choose for the creator versus contributor? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:139: WARNING: Title underline too short. What metadata standards does CyVerse support for data publication? ================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:139: WARNING: Title underline too short. What metadata standards does CyVerse support for data publication? ================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:145: WARNING: Title underline too short. How can I organize and package my dataset for publication in the CyVerse Curated Data site? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:145: WARNING: Title underline too short. How can I organize and package my dataset for publication in the CyVerse Curated Data site? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:151: WARNING: Title underline too short. What if I want to change or add metadata to my public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:151: WARNING: Title underline too short. What if I want to change or add metadata to my public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:157: WARNING: Title underline too short. Where can I go for help on permanent identifiers? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:157: WARNING: Title underline too short. Where can I go for help on permanent identifiers? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:3: WARNING: Undefined substitution referenced: "CyVerse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:5: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:3: WARNING: Unknown target name: "cyverse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:5: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:10: WARNING: Title underline too short. Data Commons Naming Conventions ======================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:14: WARNING: Title underline too short. General guidelines ------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:32: WARNING: Bullet list ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:3: WARNING: Undefined substitution referenced: "CyVerse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:5: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:3: WARNING: Unknown target name: "cyverse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:5: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:10: WARNING: Title underline too short. Is the CyVerse Curated Data Repository right for my data? ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:16: WARNING: Title underline too short. Question 1: Do you have a CyVerse account? ===================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:27: WARNING: Bullet list ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/index.rst:143: WARNING: Duplicate substitution definition name: "Github Repo Link". looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Contributors_maintainers.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/License.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/README.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/slides/README.md: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 7%] Additional/doi_faq writing output... [ 15%] Additional/naming writing output... [ 23%] Additional/right4me writing output... [ 30%] Contributors_maintainers writing output... [ 38%] License writing output... [ 46%] README writing output... [ 53%] after writing output... [ 61%] before writing output... [ 69%] index writing output... [ 76%] metadata writing output... [ 84%] organize writing output... [ 92%] slides/README writing output... [100%] submit generating indices... genindex writing additional pages... search copying images... [ 20%] ./img/data_commons/DataCommons_DrkBlue.png copying images... [ 40%] Additional/../img/cyverse_rgb.png copying images... [ 60%] ./img/homeicon.png copying images... [ 80%] Additional/../img/homeicon.png copying images... [100%] ./img/cyverse_rgb.png copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/_static' does not exist done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 63 warnings. The HTML pages are in _build/html. [rtd-command-info] start-time: 2019-12-13T19:49:08.272599Z, end-time: 2019-12-13T19:49:10.542725Z, duration: 2, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 13 added, 0 changed, 0 removed reading sources... [ 7%] Additional/doi_faq reading sources... [ 15%] Additional/naming reading sources... [ 23%] Additional/right4me reading sources... [ 30%] Contributors_maintainers /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/latest/lib/python2.7/site-packages/recommonmark/parser.py:65: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 38%] License reading sources... [ 46%] README reading sources... [ 53%] after reading sources... [ 61%] before reading sources... [ 69%] index reading sources... [ 76%] metadata reading sources... [ 84%] organize reading sources... [ 92%] slides/README reading sources... [100%] submit /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:10: WARNING: Title underline too short. DOI Frequently Asked Questions ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:12: WARNING: Title underline too short. Why should I publish my data in CyVerse Curated Data? =================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:32: WARNING: Title underline too short. Can I publish to the Data Commons if my data is not static and curated by CyVerse? ============================================================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:32: WARNING: Title underline too short. Can I publish to the Data Commons if my data is not static and curated by CyVerse? ============================================================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:38: WARNING: Title underline too short. What is a DOI ? =========== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:38: WARNING: Title underline too short. What is a DOI ? =========== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:44: WARNING: Title underline too short. Do I need to contact CyVerse before requesting a DOI? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:44: WARNING: Title underline too short. Do I need to contact CyVerse before requesting a DOI? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:52: WARNING: Title underline too short. How much does a CyVerse permanent identifier cost? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:52: WARNING: Title underline too short. How much does a CyVerse permanent identifier cost? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:58: WARNING: Title underline too short. How long will it take to obtain a permanent identifier and publish my data? ========================================================================= /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:58: WARNING: Title underline too short. How long will it take to obtain a permanent identifier and publish my data? ========================================================================= /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:70: WARNING: Title underline too short. How small or big should my data be to be published? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:70: WARNING: Title underline too short. How small or big should my data be to be published? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:76: WARNING: Title underline too short. What is the policy for submitting compressed data to CyVerse Curated Data? ======================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:76: WARNING: Title underline too short. What is the policy for submitting compressed data to CyVerse Curated Data? ======================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:82: WARNING: Title underline too short. Can I publish data in CyVerse if I am not a CyVerse user? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:82: WARNING: Title underline too short. Can I publish data in CyVerse if I am not a CyVerse user? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:88: WARNING: Title underline too short. How secure is the data in the Curated Data site? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:88: WARNING: Title underline too short. How secure is the data in the Curated Data site? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:94: WARNING: Title underline too short. What is CyVerse Data Commons? long-term commitment to hosting public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:94: WARNING: Title underline too short. What is CyVerse Data Commons? long-term commitment to hosting public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:105: WARNING: Title underline too short. How can I make it easier for people to give me (and my co-creators) credit for using my dataset? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:105: WARNING: Title underline too short. How can I make it easier for people to give me (and my co-creators) credit for using my dataset? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:113: WARNING: Title underline too short. Whom do I choose for the creator versus contributor? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:113: WARNING: Title underline too short. Whom do I choose for the creator versus contributor? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:139: WARNING: Title underline too short. What metadata standards does CyVerse support for data publication? ================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:139: WARNING: Title underline too short. What metadata standards does CyVerse support for data publication? ================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:145: WARNING: Title underline too short. How can I organize and package my dataset for publication in the CyVerse Curated Data site? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:145: WARNING: Title underline too short. How can I organize and package my dataset for publication in the CyVerse Curated Data site? ======================================================================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:151: WARNING: Title underline too short. What if I want to change or add metadata to my public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:151: WARNING: Title underline too short. What if I want to change or add metadata to my public data? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:157: WARNING: Title underline too short. Where can I go for help on permanent identifiers? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:157: WARNING: Title underline too short. Where can I go for help on permanent identifiers? ============================================ /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:3: WARNING: Undefined substitution referenced: "CyVerse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:5: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:3: WARNING: Unknown target name: "cyverse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/doi_faq.rst:5: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:10: WARNING: Title underline too short. Data Commons Naming Conventions ======================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:14: WARNING: Title underline too short. General guidelines ------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:32: WARNING: Bullet list ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:3: WARNING: Undefined substitution referenced: "CyVerse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:5: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:3: WARNING: Unknown target name: "cyverse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/naming.rst:5: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Additional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:10: WARNING: Title underline too short. Is the CyVerse Curated Data Repository right for my data? ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:16: WARNING: Title underline too short. Question 1: Do you have a CyVerse account? ===================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:27: WARNING: Bullet list ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Additional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/index.rst:143: WARNING: Duplicate substitution definition name: "Github Repo Link". looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Contributors_maintainers.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/License.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/README.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/slides/README.md: WARNING: document isn't included in any toctree done preparing documents... done assembling single document... before organize metadata submit after Additional/right4me Additional/naming Additional/doi_faq writing... done writing additional files... copying images... [ 20%] ./img/data_commons/DataCommons_DrkBlue.png copying images... [ 40%] Additional/../img/homeicon.png copying images... [ 60%] Additional/../img/cyverse_rgb.png copying images... [ 80%] ./img/homeicon.png copying images... [100%] ./img/cyverse_rgb.png copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/_static' does not exist done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded, 63 warnings. The HTML page is in _build/localmedia.