Read the Docs build information
Build id: 268568
Project: tiledb-inc-tiledb-py
Version: latest
Commit: 124404c10d75f5d03b998b8472e7ed1c5e6f5cd5
Date: 2019-12-12T20:47:49.963253Z
State: finished
Success: True


[rtd-command-info] start-time: 2019-12-12T20:53:44.325281Z, end-time: 2019-12-12T20:53:44.365515Z, duration: 0, exit-code: 0
git remote set-url origin https://github.com/TileDB-Inc/TileDB-Py.git


[rtd-command-info] start-time: 2019-12-12T20:53:44.447672Z, end-time: 2019-12-12T20:53:45.144963Z, duration: 0, exit-code: 0
git fetch origin --force --tags --prune --prune-tags --depth 50
From https://github.com/TileDB-Inc/TileDB-Py
   3237df5..124404c  dev                   -> origin/dev
 + 98156c0...4a5ade8 ihn/multi_range_query -> origin/ihn/multi_range_query  (forced update)

[rtd-command-info] start-time: 2019-12-12T20:53:45.533136Z, end-time: 2019-12-12T20:53:45.582519Z, duration: 0, exit-code: 0
git checkout --force origin/dev
Previous HEAD position was 3237df5 Eliminate reference cycles to improve Ctx cleanup
HEAD is now at 124404c Add missing test; clean-up debug output

[rtd-command-info] start-time: 2019-12-12T20:53:45.660257Z, end-time: 2019-12-12T20:53:45.699594Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2019-12-12T20:53:47.261332Z, end-time: 2019-12-12T20:53:52.333361Z, duration: 5, exit-code: 0
python3.7 -mvirtualenv --no-site-packages --no-download 
Using base prefix '/home/docs/.pyenv/versions/3.7.3'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2019-12-12T20:53:52.424476Z, end-time: 2019-12-12T20:53:54.928903Z, duration: 2, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip pip
Collecting pip
  Using cached https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl
Installing collected packages: pip
  Found existing installation: pip 19.1.1
    Uninstalling pip-19.1.1:
      Successfully uninstalled pip-19.1.1
Successfully installed pip-19.3.1

[rtd-command-info] start-time: 2019-12-12T20:53:55.082640Z, end-time: 2019-12-12T20:54:05.098981Z, duration: 10, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Collecting Pygments==2.3.1
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Requirement already up-to-date: setuptools==41.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (41.0.1)
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Processing /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip/wheels/7e/72/92/744b532c779242b57aab4bcba80c312b30c069bbd60025e7e6/mock-1.0.1-cp37-none-any.whl
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Collecting sphinx-rtd-theme<0.5
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Processing /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip/wheels/8b/99/a0/81daf51dcd359a9377b110a8a886b3895921802d2fc1b2397e/future-0.18.2-cp37-none-any.whl
Collecting imagesize
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Collecting Jinja2>=2.3
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Collecting requests>=2.0.0
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Collecting six>=1.5
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  Using cached https://files.pythonhosted.org/packages/2c/60/f2af68eb046c5de5b1fe6dd4743bf42c074f7141fe7b2737d3061533b093/Babel-2.7.0-py2.py3-none-any.whl
Collecting packaging
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Collecting MarkupSafe>=0.23
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Collecting idna<2.9,>=2.5
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Installing collected packages: Pygments, docutils, mock, pillow, alabaster, future, commonmark, imagesize, MarkupSafe, Jinja2, sphinxcontrib-websupport, idna, certifi, chardet, urllib3, requests, six, pytz, babel, pyparsing, packaging, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext
Successfully installed Jinja2-2.10.3 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.7.0 certifi-2019.11.28 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.8 imagesize-1.1.0 mock-1.0.1 packaging-19.2 pillow-5.4.1 pyparsing-2.4.5 pytz-2019.3 readthedocs-sphinx-ext-1.0.1 recommonmark-0.5.0 requests-2.22.0 six-1.13.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 urllib3-1.25.7

[rtd-command-info] start-time: 2019-12-12T20:54:05.187469Z, end-time: 2019-12-12T20:54:15.272958Z, duration: 10, exit-code: 0
python -m pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip -r requirements.txt
Collecting cmake>=3.11.0
  Using cached https://files.pythonhosted.org/packages/ff/34/0a311fedffcc7a153bbc0390ef4c378dbc7f09f9865247137f82d62f8e7a/cmake-3.15.3-py3-none-manylinux2010_x86_64.whl
Collecting cython>=0.27.3
  Using cached https://files.pythonhosted.org/packages/d8/58/2deb24de3c10cc4c0f09639b46f4f4b50059f0fdc785128a57dd9fdce026/Cython-0.29.14-cp37-cp37m-manylinux1_x86_64.whl
Collecting numpy==1.16.*
  Using cached https://files.pythonhosted.org/packages/98/5b/e1bf225ed4614b6a482ea783f75ce571b0d440ba247f6f52c0b7347d6e18/numpy-1.16.5-cp37-cp37m-manylinux1_x86_64.whl
Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1)
Collecting setuptools-scm>=1.5.4
  Using cached https://files.pythonhosted.org/packages/1d/70/97966deebaeeda0b81d3cd63ba9f8ec929b838871ed17476de9d8159db3e/setuptools_scm-3.3.3-py2.py3-none-any.whl
Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.33.4)
Processing /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip/wheels/52/41/b0/bf50409fe2b1d3b79afa3eed71b54b3e30fe5b695db2c7ba2e/psutil-5.6.7-cp37-cp37m-linux_x86_64.whl
Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil
Successfully installed cmake-3.15.3 cython-0.29.14 numpy-1.16.5 psutil-5.6.7 setuptools-scm-3.3.3

[rtd-command-info] start-time: 2019-12-12T20:54:15.358219Z, end-time: 2019-12-12T20:55:05.030168Z, duration: 49, exit-code: 0
python ./setup.py install --force
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
running install
running bdist_egg
GNU Make 4.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2014 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
-- Starting TileDB superbuild.
-- Found LZ4: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/liblz4.a  
-- Found Spdlog: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_spdlog/include  
-- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so
-- Found Zstd: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libzstd.a  
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install;/usr/local/opt/openssl
-- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) 
-- Found Curl: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libcurl.a  
-- Found CURL: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libcurl.a' (found version "")
-- Found AWS SDK for C++, Version: 1.7.108, Install Root:/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install, Platform Prefix:, Platform Dependent Libraries: pthread;crypto;ssl;z;curl
-- Found AWS lib: aws-cpp-sdk-s3 (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-cpp-sdk-s3.a)
-- Found AWS lib: aws-cpp-sdk-core (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-cpp-sdk-core.a)
-- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-c-common.a)
-- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-c-event-stream.a)
-- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-checksums.a)
-- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) 
-- Adding TBB as an external project
-- Not found clang-tidy
-- Not found clang-format
-- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist
-- Configuring done
-- Generating done
-- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build
[ 50%] Built target ep_tbb
[ 56%] Performing configure step for 'tiledb'
-- Starting TileDB regular build.
-- TileDB C++ API is not built.
-- The TileDB library is compiled with stats enabled.
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install;/usr/local/opt/openssl
-- The TileDB library is compiled with S3 support.
-- Found AWS SDK for C++, Version: 1.7.108, Install Root:/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install, Platform Prefix:, Platform Dependent Libraries: pthread;crypto;ssl;z;curl
-- Found AWS lib: aws-cpp-sdk-s3 (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-cpp-sdk-s3.a)
-- Found AWS lib: aws-cpp-sdk-core (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-cpp-sdk-core.a)
-- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-c-common.a)
-- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-c-event-stream.a)
-- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libaws-checksums.a)
-- Found CURL: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libcurl.a' (found version "")
-- The TileDB library is compiled with HDFS support.
-- Building Intel TBB: /usr/bin/make -j2 compiler=gcc tbb_build_dir=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/src/ep_tbb-build tbb_build_prefix= extra_inc=big_iron.inc
-- Found TBB imported target: TBB::tbb
-- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so
-- Found curl-config: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/bin/curl-config'
-- Adding transitive Curl library links to TileDB targets: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/externals/install/lib/libcurl.a;-lssl;-lcrypto;-lssl;-lcrypto;-lz'
-- Configuring done
-- Generating done
-- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build/tiledb
[ 62%] Performing build step for 'tiledb'
[ 98%] Built target TILEDB_CORE_OBJECTS
[100%] Built target tiledb_shared
[ 68%] No install step for 'tiledb'
[ 75%] Completed 'tiledb'
[100%] Built target tiledb
[ 98%] Built target TILEDB_CORE_OBJECTS
[100%] Built target tiledb_shared
Install the project...
-- Install configuration: "Release"
-- Up-to-date: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/libtiledb.so.1.7
-- Up-to-date: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/libtiledb.so
-- Up-to-date: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/tiledb.h
-- Up-to-date: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/tiledb_enum.h
-- Up-to-date: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/tiledb_version.h
-- Up-to-date: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include/tiledb/tiledb_export.h
-- Up-to-date: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/cmake/TileDB/TileDBConfig.cmake
-- Up-to-date: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/cmake/TileDB/TileDBTargets.cmake
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/cmake/TileDB/TileDBTargets-release.cmake
Built target install-tiledb
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build...
CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=OFF', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev']
Copying file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/libtiledb.so to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/tiledb/native/libtiledb.so
libtiledb_objects:  ['native/libtiledb.so']
running egg_info
writing tiledb.egg-info/PKG-INFO
writing dependency_links to tiledb.egg-info/dependency_links.txt
writing requirements to tiledb.egg-info/requires.txt
writing top-level names to tiledb.egg-info/top_level.txt
reading manifest template 'MANIFEST.in'
writing manifest file 'tiledb.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
copying tiledb/version.py -> build/lib.linux-x86_64-3.7/tiledb
copying tiledb/multirange_indexing.py -> build/lib.linux-x86_64-3.7/tiledb
copying tiledb/tests/test_libtiledb.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_multi_index.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/native/libtiledb.so -> build/lib.linux-x86_64-3.7/tiledb/native
running build_ext
libtiledb_exists checking 'library_dirs': ['/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib']
libtiledb_exists found: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib/libtiledb.so'
cythoning tiledb/libtiledb.pyx to tiledb/libtiledb.cpp
building 'tiledb.libtiledb' extension
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.3/include/python3.7m -c tiledb/libtiledb.cpp -o build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -std=c++11 -Wno-deprecated-declarations
In file included from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
                 from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from tiledb/libtiledb.cpp:621:
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
tiledb/indexing.pyx: In function ‘PyObject* __pyx_f_6tiledb_9libtiledb_execute_multi_index(tiledb_ctx_t*, tiledb_query_t*, __pyx_obj_6tiledb_9libtiledb_Array*, PyObject*, PyObject*)’:
tiledb/indexing.pyx:176:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for attr_idx in range(nattr):
                          ~~~~~~~~~~~^           
tiledb/indexing.pyx:228:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for attr_idx in range(nattr):
                          ~~~~~~~~~~~^           
tiledb/indexing.pyx:253:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for attr_idx in range(nattr):
                        ~~~~~~~~~~ ^           
tiledb/indexing.pyx: In function ‘PyObject* __pyx_f_6tiledb_9libtiledb_multi_index(__pyx_obj_6tiledb_9libtiledb_Array*, PyObject*, PyObject*, int, __pyx_opt_args_6tiledb_9libtiledb_multi_index*)’:
tiledb/indexing.pyx:312:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for dim_idx in range(len(ranges)):
                        ~~~~~~~~~~~^~~~        
tiledb/indexing.pyx:320:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for range_idx in range(len(dim_ranges)):
                          ~~~~~~~~~~~^~~~~~~~~~~~
tiledb/libtiledb.pyx: In function ‘PyObject* __pyx_f_6tiledb_9libtiledb_get_query_fragment_info(tiledb_ctx_t*, tiledb_query_t*)’:
tiledb/libtiledb.pyx:207:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for fragment_idx in range(0, num_fragments):
                       ~~~~~~~~~~^~~~~~~~~~~
tiledb/libtiledb.pyx: In function ‘int __pyx_pf_6tiledb_9libtiledb_9ReadQuery___init__(__pyx_obj_6tiledb_9libtiledb_ReadQuery*, __pyx_obj_6tiledb_9libtiledb_Array*, PyArrayObject*, PyObject*, tiledb_layout_t)’:
tiledb/libtiledb.pyx:3495:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for i in range(nattr):
                              ~~~~~      ^          
tiledb/libtiledb.pyx:3542:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for i in range(nattr):
                              ~~~~~      ^          
tiledb/libtiledb.pyx:3568:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for i in range(nattr):
                              ~~~~~      ^          
tiledb/metadata.pyx: At global scope:
tiledb/metadata.pyx:238:18: warning: ‘PyObject* __pyx_f_6tiledb_9libtiledb_put_metadata_dict(__pyx_obj_6tiledb_9libtiledb_Array*, PyObject*)’ defined but not used [-Wunused-function]
 cdef put_metadata_dict(Array array, kv):
                  ^~~~~~~~~~~~~~~~~~~~~~~                     
tiledb/np2buf.pyx:22:18: warning: ‘PyObject* __pyx_f_6tiledb_9libtiledb__varlen_type_compat(PyObject*, PyObject*)’ defined but not used [-Wunused-function]
 cdef _varlen_type_compat(object reftype, object val):
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~          
g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.3/lib -L/home/docs/.pyenv/versions/3.7.3/lib build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/__init__.py -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/array.py -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/version.py -> build/bdist.linux-x86_64/egg/tiledb
creating build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/__init__.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/all.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_libtiledb.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_util.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_examples.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/common.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_domain_index.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_multi_index.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_pandas_dataframe.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_dask.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_metadata.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/highlevel.py -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/multirange_indexing.py -> build/bdist.linux-x86_64/egg/tiledb
creating build/bdist.linux-x86_64/egg/tiledb/native
copying build/lib.linux-x86_64-3.7/tiledb/native/libtiledb.so -> build/bdist.linux-x86_64/egg/tiledb/native
copying build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/tiledb
byte-compiling build/bdist.linux-x86_64/egg/tiledb/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/array.py to array.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/version.py to version.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/all.py to all.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_libtiledb.py to test_libtiledb.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_util.py to test_util.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_examples.py to test_examples.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/common.py to common.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_domain_index.py to test_domain_index.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_multi_index.py to test_multi_index.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_pandas_dataframe.py to test_pandas_dataframe.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_dask.py to test_dask.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_metadata.py to test_metadata.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/highlevel.py to highlevel.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/multirange_indexing.py to multirange_indexing.cpython-37.pyc
creating stub loader for tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so
byte-compiling build/bdist.linux-x86_64/egg/tiledb/libtiledb.py to libtiledb.cpython-37.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt
creating 'dist/tiledb-0.1.dev52-py3.7-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing tiledb-0.1.dev52-py3.7-linux-x86_64.egg
creating /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/tiledb-0.1.dev52-py3.7-linux-x86_64.egg
Extracting tiledb-0.1.dev52-py3.7-linux-x86_64.egg to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages
Adding tiledb 0.1.dev52 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/tiledb-0.1.dev52-py3.7-linux-x86_64.egg
Processing dependencies for tiledb==0.1.dev52
Searching for wheel==0.33.4
Best match: wheel 0.33.4
Adding wheel 0.33.4 to easy-install.pth file
Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages
Searching for numpy==1.16.5
Best match: numpy 1.16.5
Adding numpy 1.16.5 to easy-install.pth file
Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin
Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin
Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages
Finished processing dependencies for tiledb==0.1.dev52
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors
  warnings.warn('"%s" is shallow and may cause errors' % (wd.path,))
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/tiledb/libtiledb.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
warning: tiledb/libtiledb.pyx:4588:0: Overriding cdef method with def method.

[rtd-command-info] start-time: 2019-12-12T20:55:06.386447Z, end-time: 2019-12-12T20:55:06.707190Z, duration: 0, exit-code: 0
cat doc/source/conf.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#

# -- Imports configuration -------------------------------------------------

import os
import sys
from os.path import abspath, join, dirname

sys.path.insert(0, abspath(join(dirname(__file__))))

# -- ReadTheDocs configuration ---------------------------------------------

# Special handling on ReadTheDocs builds.
# Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py
readthedocs = os.environ.get('READTHEDOCS', None) == 'True'
rtd_version = os.environ.get('READTHEDOCS_VERSION', 'latest')
rtd_version = rtd_version if rtd_version in ['stable', 'latest'] else 'stable'

# -- Project information -----------------------------------------------------

project = 'TileDB-Py'
copyright = '2019, TileDB, Inc.'
author = 'TileDB, Inc.'

# The short X.Y version
version = '0.4'
# The full version, including alpha/beta/rc tags
release = '0.4.0'


# -- General configuration ---------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.doctest',
    'sphinx.ext.intersphinx',
]

# Mapping for linking between RTD subprojects.
if readthedocs:
    intersphinx_mapping = {
        'tiledb': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/' % rtd_version, None),
        'tiledb-py': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/' % rtd_version, None),
        'python': ('https://docs.python.org/', None)
    }

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The master toctree document.
master_doc = 'index'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This pattern also affects html_static_path and html_extra_path .
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'friendly'


# -- Options for HTML output -------------------------------------------------

html_static_path = ['_static']
html_logo = '_static/tileDB_uppercase_600_112.png'
html_favicon = '_static/favicon.ico'

if readthedocs:
    html_theme = 'default'
else:
    import sphinx_rtd_theme
    html_theme = 'sphinx_rtd_theme'
    html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# -- Options for HTMLHelp output ---------------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = 'TileDB-Pydoc'


# -- Options for LaTeX output ------------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'TileDB-Py.tex', 'TileDB-Py Documentation',
     'TileDB, Inc.', 'manual'),
]


# -- Options for manual page output ------------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'tiledb-py', 'TileDB-Py Documentation',
     [author], 1)
]


# -- Options for Texinfo output ----------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'TileDB-Py', 'TileDB-Py Documentation',
     author, 'TileDB-Py', 'One line description of project.',
     'Miscellaneous'),
]

# -- Custom Document processing ----------------------------------------------

# Generate the sidebar automatically so that it is identical across all subprojects.
# This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs
import gensidebar
gensidebar.generate_sidebar({'on_rtd': readthedocs, 'rtd_version': rtd_version}, 'tiledb-py')

# -- Custom setup -----------------------------------------------------------

def setup(app):
    app.add_stylesheet('custom.css')




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://media.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://media.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("0.5.1", "/en/0.5.1/"),
    ("0.5.0", "/en/0.5.0/"),
    ("0.4.4", "/en/0.4.4/"),
    ("0.4.3", "/en/0.4.3/"),
    ("0.4.2", "/en/0.4.2/"),
    ("0.4.1", "/en/0.4.1/"),
    ("0.4.0", "/en/0.4.0/"),
    ("0.3.1", "/en/0.3.1/"),
    ("0.3.0", "/en/0.3.0/"),
    ("0.2.1", "/en/0.2.1/"),
    ("0.2.0", "/en/0.2.0/"),
    ("release-0.4.1", "/en/release-0.4.1/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
    ],
    'slug': 'tiledb-inc-tiledb-py',
    'name': u'TileDB-Py',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/tiledb-py/en/stable/',
    'analytics_code': '',
    'single_version': False,
    'conf_py_path': '/doc/source/',
    'api_host': 'https://readthedocs.com',
    'proxied_api_host': 'https://readthedocs.com',
    'github_user': 'TileDB-Inc',
    'github_repo': 'TileDB-Py',
    'github_version': 'dev',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'dev',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'dev',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '124404c1',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

[rtd-command-info] start-time: 2019-12-12T20:55:06.800170Z, end-time: 2019-12-12T20:55:10.035847Z, duration: 3, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.8.5
loading translations [en]... done
making output directory...
loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/en/latest/objects.inv...
loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/latest/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/latest/objects.inv' not fetchable due to <class 'requests.exceptions.HTTPError'>: 404 Client Error: Not Found for url: https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/latest/objects.inv
loading intersphinx inventory from https://docs.python.org/objects.inv...
intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 2 source files that are out of date
updating environment: 2 added, 0 changed, 0 removed
reading sources... [ 50%] index
reading sources... [100%] python-api

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 50%] index
writing output... [100%] python-api

generating indices... genindex
writing additional pages... search
copying static files... done
copying readthedocs static files... done
copying searchtools... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 1 warning.

The HTML pages are in _build/html.