Read the Docs build information Build id: 2653278 Project: iiasa-energy-program-message-ix Version: latest Commit: 5c0b44f0118c3fcd361d1345d6a7cf1bd61658a0 Date: 2024-12-02T08:38:14.292382Z State: finished Success: True [rtd-command-info] start-time: 2024-12-02T08:38:18.867781Z, end-time: 2024-12-02T08:38:21.284757Z, duration: 2, exit-code: 0 git clone --depth 1 https://github.com/iiasa/message_ix.git . Cloning into '.'... [rtd-command-info] start-time: 2024-12-02T08:38:21.359943Z, end-time: 2024-12-02T08:38:22.252096Z, duration: 0, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 refs/heads/main:refs/remotes/origin/main From https://github.com/iiasa/message_ix * [new tag] v3.9.0 -> v3.9.0 [rtd-command-info] start-time: 2024-12-02T08:38:22.381622Z, end-time: 2024-12-02T08:38:22.527463Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 5c0b44f Bump the all-dependencies group with 2 updates (#895) [rtd-command-info] start-time: 2024-12-02T08:38:22.594239Z, end-time: 2024-12-02T08:38:22.659473Z, duration: 0, exit-code: 0 cat .readthedocs.yaml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Build ePub formats: - epub # Set the version of Python and other tools you might need build: os: ubuntu-22.04 tools: python: "3.11" # Build documentation in the docs/ directory with Sphinx sphinx: configuration: doc/conf.py python: install: - requirements: doc/requirements.txt - requirements: ci/rtd-requirements.txt - method: pip path: . extra_requirements: - docs [rtd-command-info] start-time: 2024-12-02T08:38:28.814103Z, end-time: 2024-12-02T08:38:28.901928Z, duration: 0, exit-code: 0 asdf global python 3.11.10 [rtd-command-info] start-time: 2024-12-02T08:38:29.323392Z, end-time: 2024-12-02T08:38:30.520837Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.11.10.final.0-64 in 829ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2024-12-02T08:38:30.618169Z, end-time: 2024-12-02T08:38:43.424998Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (23.1) Collecting pip Downloading pip-24.3.1-py3-none-any.whl (1.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 10.6 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (67.6.1) Collecting setuptools Downloading setuptools-75.6.0-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 22.0 MB/s eta 0:00:00 Installing collected packages: setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 67.6.1 Uninstalling setuptools-67.6.1: Successfully uninstalled setuptools-67.6.1 Attempting uninstall: pip Found existing installation: pip 23.1 Uninstalling pip-23.1: Successfully uninstalled pip-23.1 Successfully installed pip-24.3.1 setuptools-75.6.0 [rtd-command-info] start-time: 2024-12-02T08:38:43.505706Z, end-time: 2024-12-02T08:38:53.777457Z, duration: 10, exit-code: 0 python -m pip install --upgrade --no-cache-dir sphinx Collecting sphinx Downloading sphinx-8.1.3-py3-none-any.whl.metadata (6.4 kB) Collecting sphinxcontrib-applehelp>=1.0.7 (from sphinx) Downloading sphinxcontrib_applehelp-2.0.0-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-devhelp>=1.0.6 (from sphinx) Downloading sphinxcontrib_devhelp-2.0.0-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-htmlhelp>=2.0.6 (from sphinx) Downloading sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-jsmath>=1.0.1 (from sphinx) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting sphinxcontrib-qthelp>=1.0.6 (from sphinx) Downloading sphinxcontrib_qthelp-2.0.0-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-serializinghtml>=1.1.9 (from sphinx) Downloading sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl.metadata (2.4 kB) Collecting Jinja2>=3.1 (from sphinx) Downloading jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) Collecting Pygments>=2.17 (from sphinx) Downloading pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB) Collecting docutils<0.22,>=0.20 (from sphinx) Downloading docutils-0.21.2-py3-none-any.whl.metadata (2.8 kB) Collecting snowballstemmer>=2.2 (from sphinx) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB) Collecting babel>=2.13 (from sphinx) Downloading babel-2.16.0-py3-none-any.whl.metadata (1.5 kB) Collecting alabaster>=0.7.14 (from sphinx) Downloading alabaster-1.0.0-py3-none-any.whl.metadata (2.8 kB) Collecting imagesize>=1.3 (from sphinx) Downloading imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB) Collecting requests>=2.30.0 (from sphinx) Downloading requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) Collecting packaging>=23.0 (from sphinx) Downloading packaging-24.2-py3-none-any.whl.metadata (3.2 kB) Collecting MarkupSafe>=2.0 (from Jinja2>=3.1->sphinx) Downloading MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.30.0->sphinx) Downloading charset_normalizer-3.4.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB) Collecting idna<4,>=2.5 (from requests>=2.30.0->sphinx) Downloading idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting urllib3<3,>=1.21.1 (from requests>=2.30.0->sphinx) Downloading urllib3-2.2.3-py3-none-any.whl.metadata (6.5 kB) Collecting certifi>=2017.4.17 (from requests>=2.30.0->sphinx) Downloading certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB) Downloading sphinx-8.1.3-py3-none-any.whl (3.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.5/3.5 MB 124.3 MB/s eta 0:00:00 Downloading alabaster-1.0.0-py3-none-any.whl (13 kB) Downloading babel-2.16.0-py3-none-any.whl (9.6 MB) 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sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB) Downloading certifi-2024.8.30-py3-none-any.whl (167 kB) Downloading charset_normalizer-3.4.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) Downloading idna-3.10-py3-none-any.whl (70 kB) Downloading MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) Downloading urllib3-2.2.3-py3-none-any.whl (126 kB) Installing collected packages: snowballstemmer, urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, sphinx Successfully installed Jinja2-3.1.4 MarkupSafe-3.0.2 Pygments-2.18.0 alabaster-1.0.0 babel-2.16.0 certifi-2024.8.30 charset-normalizer-3.4.0 docutils-0.21.2 idna-3.10 imagesize-1.4.1 packaging-24.2 requests-2.32.3 snowballstemmer-2.2.0 sphinx-8.1.3 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.2.3 [rtd-command-info] start-time: 2024-12-02T08:38:53.867066Z, end-time: 2024-12-02T08:38:58.582708Z, duration: 4, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r doc/requirements.txt Collecting alabaster==0.7.16 (from -r doc/requirements.txt (line 7)) Downloading alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB) Requirement already satisfied: babel==2.16.0 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from -r doc/requirements.txt (line 9)) (2.16.0) Collecting certifi==2024.7.4 (from -r doc/requirements.txt (line 11)) Downloading certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB) Collecting charset-normalizer==3.2.0 (from -r doc/requirements.txt (line 13)) Downloading charset_normalizer-3.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (31 kB) Collecting docutils==0.20.1 (from -r doc/requirements.txt (line 15)) Downloading docutils-0.20.1-py3-none-any.whl.metadata (2.8 kB) Collecting gitdb==4.0.10 (from -r doc/requirements.txt (line 21)) Downloading gitdb-4.0.10-py3-none-any.whl.metadata (1.1 kB) Collecting gitpython==3.1.43 (from -r doc/requirements.txt (line 23)) Downloading GitPython-3.1.43-py3-none-any.whl.metadata (13 kB) Collecting idna==3.7 (from -r doc/requirements.txt (line 25)) Downloading idna-3.7-py3-none-any.whl.metadata (9.9 kB) Requirement already satisfied: imagesize==1.4.1 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from -r doc/requirements.txt (line 27)) (1.4.1) Requirement already satisfied: jinja2==3.1.4 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from -r doc/requirements.txt (line 29)) (3.1.4) Collecting latexcodec==2.0.1 (from -r doc/requirements.txt (line 31)) Downloading latexcodec-2.0.1-py2.py3-none-any.whl.metadata (4.7 kB) Collecting markupsafe==2.1.3 (from -r doc/requirements.txt (line 33)) Downloading MarkupSafe-2.1.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Collecting numpydoc==1.8.0 (from -r doc/requirements.txt (line 35)) Downloading numpydoc-1.8.0-py3-none-any.whl.metadata (4.3 kB) Collecting packaging==23.1 (from -r doc/requirements.txt (line 37)) Downloading packaging-23.1-py3-none-any.whl.metadata (3.1 kB) Collecting pybtex==0.24.0 (from -r doc/requirements.txt (line 39)) Downloading pybtex-0.24.0-py2.py3-none-any.whl.metadata (2.0 kB) Collecting pybtex-docutils==1.0.2 (from -r doc/requirements.txt (line 43)) Downloading pybtex_docutils-1.0.2-py3-none-any.whl.metadata (4.2 kB) Requirement already satisfied: pygments==2.18.0 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from -r doc/requirements.txt (line 45)) (2.18.0) Collecting pyyaml==6.0.1 (from -r doc/requirements.txt (line 47)) Downloading PyYAML-6.0.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting requests==2.32.0 (from -r doc/requirements.txt (line 49)) Downloading requests-2.32.0-py3-none-any.whl.metadata (4.6 kB) Collecting six==1.16.0 (from -r doc/requirements.txt (line 51)) Downloading six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting smmap==5.0.0 (from -r doc/requirements.txt (line 55)) Downloading smmap-5.0.0-py3-none-any.whl.metadata (4.2 kB) Requirement already satisfied: snowballstemmer==2.2.0 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from -r doc/requirements.txt (line 57)) (2.2.0) Requirement already satisfied: sphinx==8.1.3 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from -r doc/requirements.txt (line 59)) (8.1.3) Collecting sphinx-rtd-theme==3.0.2 (from -r doc/requirements.txt (line 67)) Downloading sphinx_rtd_theme-3.0.2-py2.py3-none-any.whl.metadata (4.4 kB) Requirement already satisfied: sphinxcontrib-applehelp==2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from -r doc/requirements.txt (line 69)) (2.0.0) Collecting sphinxcontrib-bibtex==2.6.3 (from -r doc/requirements.txt (line 71)) Downloading sphinxcontrib_bibtex-2.6.3-py3-none-any.whl.metadata (6.3 kB) Requirement already satisfied: sphinxcontrib-devhelp==2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from -r doc/requirements.txt (line 73)) (2.0.0) Requirement already satisfied: sphinxcontrib-htmlhelp==2.1.0 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from -r doc/requirements.txt (line 75)) (2.1.0) Collecting sphinxcontrib-jquery==4.1 (from -r doc/requirements.txt (line 77)) Downloading sphinxcontrib_jquery-4.1-py2.py3-none-any.whl.metadata (2.6 kB) Requirement already satisfied: sphinxcontrib-jsmath==1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from -r doc/requirements.txt (line 79)) (1.0.1) Requirement already satisfied: sphinxcontrib-qthelp==2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from -r doc/requirements.txt (line 81)) (2.0.0) Collecting sphinxcontrib-serializinghtml==1.1.9 (from -r doc/requirements.txt (line 83)) Downloading sphinxcontrib_serializinghtml-1.1.9-py3-none-any.whl.metadata (2.3 kB) Collecting tabulate==0.9.0 (from -r doc/requirements.txt (line 85)) Downloading tabulate-0.9.0-py3-none-any.whl.metadata (34 kB) Collecting urllib3==2.2.2 (from -r doc/requirements.txt (line 87)) Downloading urllib3-2.2.2-py3-none-any.whl.metadata (6.4 kB) WARNING: The candidate selected for download or install is a yanked version: 'requests' candidate (version 2.32.0 at https://files.pythonhosted.org/packages/24/e8/09e8d662a9675a4e4f5dd7a8e6127b463a091d2703ed931a64aa66d00065/requests-2.32.0-py3-none-any.whl (from https://pypi.org/simple/requests/) (requires-python:>=3.8)) Reason for being yanked: Yanked due to conflicts with CVE-2024-35195 mitigation Downloading alabaster-0.7.16-py3-none-any.whl (13 kB) Downloading certifi-2024.7.4-py3-none-any.whl (162 kB) Downloading charset_normalizer-3.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (199 kB) Downloading docutils-0.20.1-py3-none-any.whl (572 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 572.7/572.7 kB 45.7 MB/s eta 0:00:00 Downloading gitdb-4.0.10-py3-none-any.whl (62 kB) Downloading GitPython-3.1.43-py3-none-any.whl (207 kB) Downloading idna-3.7-py3-none-any.whl (66 kB) Downloading latexcodec-2.0.1-py2.py3-none-any.whl (18 kB) Downloading MarkupSafe-2.1.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (28 kB) Downloading numpydoc-1.8.0-py3-none-any.whl (64 kB) Downloading packaging-23.1-py3-none-any.whl (48 kB) Downloading pybtex-0.24.0-py2.py3-none-any.whl (561 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 561.4/561.4 kB 492.8 MB/s eta 0:00:00 Downloading pybtex_docutils-1.0.2-py3-none-any.whl (6.3 kB) Downloading PyYAML-6.0.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (757 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 757.7/757.7 kB 532.2 MB/s eta 0:00:00 Downloading requests-2.32.0-py3-none-any.whl (63 kB) Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Downloading smmap-5.0.0-py3-none-any.whl (24 kB) Downloading sphinx_rtd_theme-3.0.2-py2.py3-none-any.whl (7.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.7/7.7 MB 208.1 MB/s eta 0:00:00 Downloading sphinxcontrib_bibtex-2.6.3-py3-none-any.whl (40 kB) Downloading sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB) Downloading sphinxcontrib_serializinghtml-1.1.9-py3-none-any.whl (92 kB) Downloading tabulate-0.9.0-py3-none-any.whl (35 kB) Downloading urllib3-2.2.2-py3-none-any.whl (121 kB) Installing collected packages: urllib3, tabulate, smmap, six, pyyaml, packaging, markupsafe, idna, docutils, charset-normalizer, certifi, alabaster, requests, latexcodec, gitdb, pybtex, gitpython, pybtex-docutils, sphinxcontrib-serializinghtml, sphinxcontrib-jquery, sphinxcontrib-bibtex, sphinx-rtd-theme, numpydoc Attempting uninstall: urllib3 Found existing installation: urllib3 2.2.3 Uninstalling urllib3-2.2.3: Successfully uninstalled urllib3-2.2.3 Attempting uninstall: packaging Found existing installation: packaging 24.2 Uninstalling packaging-24.2: Successfully uninstalled packaging-24.2 Attempting uninstall: markupsafe Found existing installation: MarkupSafe 3.0.2 Uninstalling MarkupSafe-3.0.2: Successfully uninstalled MarkupSafe-3.0.2 Attempting uninstall: idna Found existing installation: idna 3.10 Uninstalling idna-3.10: Successfully uninstalled idna-3.10 Attempting uninstall: docutils Found existing installation: docutils 0.21.2 Uninstalling docutils-0.21.2: Successfully uninstalled docutils-0.21.2 Attempting uninstall: charset-normalizer Found existing installation: charset-normalizer 3.4.0 Uninstalling charset-normalizer-3.4.0: Successfully uninstalled charset-normalizer-3.4.0 Attempting uninstall: certifi Found existing installation: certifi 2024.8.30 Uninstalling certifi-2024.8.30: Successfully uninstalled certifi-2024.8.30 Attempting uninstall: alabaster Found existing installation: alabaster 1.0.0 Uninstalling alabaster-1.0.0: Successfully uninstalled alabaster-1.0.0 Attempting uninstall: requests Found existing installation: requests 2.32.3 Uninstalling requests-2.32.3: Successfully uninstalled requests-2.32.3 Attempting uninstall: sphinxcontrib-serializinghtml Found existing installation: sphinxcontrib-serializinghtml 2.0.0 Uninstalling sphinxcontrib-serializinghtml-2.0.0: Successfully uninstalled sphinxcontrib-serializinghtml-2.0.0 Successfully installed alabaster-0.7.16 certifi-2024.7.4 charset-normalizer-3.2.0 docutils-0.20.1 gitdb-4.0.10 gitpython-3.1.43 idna-3.7 latexcodec-2.0.1 markupsafe-2.1.3 numpydoc-1.8.0 packaging-23.1 pybtex-0.24.0 pybtex-docutils-1.0.2 pyyaml-6.0.1 requests-2.32.0 six-1.16.0 smmap-5.0.0 sphinx-rtd-theme-3.0.2 sphinxcontrib-bibtex-2.6.3 sphinxcontrib-jquery-4.1 sphinxcontrib-serializinghtml-1.1.9 tabulate-0.9.0 urllib3-2.2.2 [rtd-command-info] start-time: 2024-12-02T08:38:58.652660Z, end-time: 2024-12-02T08:39:23.859811Z, duration: 25, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r ci/rtd-requirements.txt Collecting ixmp (from -r ci/rtd-requirements.txt (line 1)) Cloning https://github.com/iiasa/ixmp.git (to revision main) to /tmp/pip-install-j2jqe5d8/ixmp_161e4d46d6d847d68dee393651f60707 Running command git clone --filter=blob:none --quiet https://github.com/iiasa/ixmp.git /tmp/pip-install-j2jqe5d8/ixmp_161e4d46d6d847d68dee393651f60707 Resolved https://github.com/iiasa/ixmp.git to commit 02dadfa4bf78185fa45fd7ab22e45b7ec80709c3 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting click (from ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB) Collecting genno>=1.20 (from ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading genno-1.27.1-py3-none-any.whl.metadata (4.0 kB) Collecting JPype1>=1.2.1 (from ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading jpype1-1.5.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.9 kB) Collecting openpyxl (from ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading openpyxl-3.1.5-py2.py3-none-any.whl.metadata (2.5 kB) Collecting pandas>=1.2 (from ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB) Collecting pint (from ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading Pint-0.24.4-py3-none-any.whl.metadata (8.5 kB) Requirement already satisfied: PyYAML in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from ixmp->-r ci/rtd-requirements.txt (line 1)) (6.0.1) Collecting xarray (from ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading xarray-2024.11.0-py3-none-any.whl.metadata (11 kB) Collecting dask>=2.14 (from dask[array]>=2.14->genno>=1.20->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading dask-2024.11.2-py3-none-any.whl.metadata (3.7 kB) Collecting platformdirs (from genno>=1.20->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading platformdirs-4.3.6-py3-none-any.whl.metadata (11 kB) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from JPype1>=1.2.1->ixmp->-r ci/rtd-requirements.txt (line 1)) (23.1) Collecting numpy>=1.23.2 (from pandas>=1.2->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading numpy-2.1.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB) Collecting python-dateutil>=2.8.2 (from pandas>=1.2->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting pytz>=2020.1 (from pandas>=1.2->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas>=1.2->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB) Collecting packaging (from JPype1>=1.2.1->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading packaging-24.2-py3-none-any.whl.metadata (3.2 kB) Collecting et-xmlfile (from openpyxl->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading et_xmlfile-2.0.0-py3-none-any.whl.metadata (2.7 kB) Collecting typing-extensions>=4.0.0 (from pint->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) Collecting flexcache>=0.3 (from pint->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading flexcache-0.3-py3-none-any.whl.metadata (7.0 kB) Collecting flexparser>=0.4 (from pint->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading flexparser-0.4-py3-none-any.whl.metadata (18 kB) Collecting cloudpickle>=3.0.0 (from dask>=2.14->dask[array]>=2.14->genno>=1.20->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading cloudpickle-3.1.0-py3-none-any.whl.metadata (7.0 kB) Collecting fsspec>=2021.09.0 (from dask>=2.14->dask[array]>=2.14->genno>=1.20->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading fsspec-2024.10.0-py3-none-any.whl.metadata (11 kB) Collecting partd>=1.4.0 (from dask>=2.14->dask[array]>=2.14->genno>=1.20->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) Collecting toolz>=0.10.0 (from dask>=2.14->dask[array]>=2.14->genno>=1.20->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading toolz-1.0.0-py3-none-any.whl.metadata (5.1 kB) Collecting importlib-metadata>=4.13.0 (from dask>=2.14->dask[array]>=2.14->genno>=1.20->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB) Collecting pyarrow>=10.0.1 (from pandas[parquet]>=1.0->genno>=1.20->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading pyarrow-18.1.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from python-dateutil>=2.8.2->pandas>=1.2->ixmp->-r ci/rtd-requirements.txt (line 1)) (1.16.0) Collecting zipp>=3.20 (from importlib-metadata>=4.13.0->dask>=2.14->dask[array]>=2.14->genno>=1.20->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB) Collecting locket (from partd>=1.4.0->dask>=2.14->dask[array]>=2.14->genno>=1.20->ixmp->-r ci/rtd-requirements.txt (line 1)) Downloading locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB) Downloading genno-1.27.1-py3-none-any.whl (212 kB) Downloading jpype1-1.5.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (493 kB) Downloading pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.1/13.1 MB 177.5 MB/s eta 0:00:00 Downloading xarray-2024.11.0-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 500.5 MB/s eta 0:00:00 Downloading click-8.1.7-py3-none-any.whl (97 kB) Downloading openpyxl-3.1.5-py2.py3-none-any.whl (250 kB) Downloading Pint-0.24.4-py3-none-any.whl (302 kB) Downloading dask-2024.11.2-py3-none-any.whl (1.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 576.6 MB/s eta 0:00:00 Downloading flexcache-0.3-py3-none-any.whl (13 kB) Downloading flexparser-0.4-py3-none-any.whl (27 kB) Downloading numpy-2.1.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.3/16.3 MB 185.3 MB/s eta 0:00:00 Downloading packaging-24.2-py3-none-any.whl (65 kB) Downloading platformdirs-4.3.6-py3-none-any.whl (18 kB) Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Downloading pytz-2024.2-py2.py3-none-any.whl (508 kB) Downloading typing_extensions-4.12.2-py3-none-any.whl (37 kB) Downloading tzdata-2024.2-py2.py3-none-any.whl (346 kB) Downloading et_xmlfile-2.0.0-py3-none-any.whl (18 kB) Downloading cloudpickle-3.1.0-py3-none-any.whl (22 kB) Downloading fsspec-2024.10.0-py3-none-any.whl (179 kB) Downloading importlib_metadata-8.5.0-py3-none-any.whl (26 kB) Downloading partd-1.4.2-py3-none-any.whl (18 kB) Downloading pyarrow-18.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (40.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.1/40.1 MB 185.3 MB/s eta 0:00:00 Downloading toolz-1.0.0-py3-none-any.whl (56 kB) Downloading zipp-3.21.0-py3-none-any.whl (9.6 kB) Downloading locket-1.0.0-py2.py3-none-any.whl (4.4 kB) Building wheels for collected packages: ixmp Building wheel for ixmp (pyproject.toml): started Building wheel for ixmp (pyproject.toml): finished with status 'done' Created wheel for ixmp: filename=ixmp-3.9.1.dev60+g02dadfa-py3-none-any.whl size=19228005 sha256=89efc891935ffe079afdc984fb8d0f72e4c65ad662662035e576ac809b4346f2 Stored in directory: /tmp/pip-ephem-wheel-cache-g5j1pcct/wheels/4f/e7/8d/875456bcd70b2a1439c30c342ebf68034264bd77e622ace0da Successfully built ixmp Installing collected packages: pytz, zipp, tzdata, typing-extensions, toolz, python-dateutil, pyarrow, platformdirs, packaging, numpy, locket, fsspec, et-xmlfile, cloudpickle, click, partd, pandas, openpyxl, JPype1, importlib-metadata, flexparser, flexcache, xarray, pint, dask, genno, ixmp Attempting uninstall: packaging Found existing installation: packaging 23.1 Uninstalling packaging-23.1: Successfully uninstalled packaging-23.1 Successfully installed JPype1-1.5.1 click-8.1.7 cloudpickle-3.1.0 dask-2024.11.2 et-xmlfile-2.0.0 flexcache-0.3 flexparser-0.4 fsspec-2024.10.0 genno-1.27.1 importlib-metadata-8.5.0 ixmp-3.9.1.dev60+g02dadfa locket-1.0.0 numpy-2.1.3 openpyxl-3.1.5 packaging-24.2 pandas-2.2.3 partd-1.4.2 pint-0.24.4 platformdirs-4.3.6 pyarrow-18.1.0 python-dateutil-2.9.0.post0 pytz-2024.2 toolz-1.0.0 typing-extensions-4.12.2 tzdata-2024.2 xarray-2024.11.0 zipp-3.21.0 [rtd-command-info] start-time: 2024-12-02T08:39:23.945984Z, end-time: 2024-12-02T08:39:56.627949Z, duration: 32, exit-code: 0 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir .[docs] Processing /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: click in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from message_ix==3.9.1.dev55+g5c0b44f) (8.1.7) Requirement already satisfied: ixmp>=3.9.0 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from message_ix==3.9.1.dev55+g5c0b44f) (3.9.1.dev60+g02dadfa) Requirement already satisfied: genno>=1.20 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from genno[pyam]>=1.20->message_ix==3.9.1.dev55+g5c0b44f) (1.27.1) Requirement already satisfied: numpy in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from message_ix==3.9.1.dev55+g5c0b44f) (2.1.3) Requirement already satisfied: pandas>=1.2 in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from message_ix==3.9.1.dev55+g5c0b44f) (2.2.3) Requirement already satisfied: PyYAML in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from message_ix==3.9.1.dev55+g5c0b44f) (6.0.1) Collecting scipy (from message_ix==3.9.1.dev55+g5c0b44f) Downloading scipy-1.14.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) Requirement already satisfied: GitPython in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from message_ix==3.9.1.dev55+g5c0b44f) (3.1.43) Requirement already satisfied: numpydoc in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages (from message_ix==3.9.1.dev55+g5c0b44f) (1.8.0) Requirement already satisfied: 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sniffio-1.3.1-py3-none-any.whl (10 kB) Downloading statsmodels-0.14.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (10.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.8/10.8 MB 247.8 MB/s eta 0:00:00 Downloading patsy-1.0.1-py2.py3-none-any.whl (232 kB) Building wheels for collected packages: message_ix Building wheel for message_ix (pyproject.toml): started Building wheel for message_ix (pyproject.toml): finished with status 'done' Created wheel for message_ix: filename=message_ix-3.9.1.dev55+g5c0b44f-py3-none-any.whl size=6098465 sha256=278db30ed27156965fedf6fc7f803c7bb6179049e273047fde9325b7102b86af Stored in directory: /tmp/pip-ephem-wheel-cache-30y1rfho/wheels/81/df/d3/60e886159b7c254568df132672f6ab70814a90f7ef8f33fe4a Successfully built message_ix Installing collected packages: XlsxWriter, wrapt, wquantiles, typeguard, toml, sniffio, shellingham, scipy, python-dotenv, pyparsing, PyJWT, pydantic-core, psycopg-binary, psycopg, pillow, patsy, mypy-extensions, multimethod, mdurl, Mako, lxml, kiwisolver, hyperframe, hpack, h11, greenlet, graphviz, fonttools, cycler, contourpy, annotated-types, typing-inspect, SQLAlchemy, pydantic, mypy, matplotlib, markdown-it-py, httpcore, h2, anyio, statsmodels, starlette, SQLAlchemy-Utils, seaborn, sdmx1, rich, pydantic-settings, pandera, mizani, iam-units, httpx, alembic, typer, plotnine, fastapi, ixmp4, pyam-iamc, message_ix Successfully installed Mako-1.3.6 PyJWT-2.10.1 SQLAlchemy-2.0.36 SQLAlchemy-Utils-0.41.2 XlsxWriter-3.2.0 alembic-1.14.0 annotated-types-0.7.0 anyio-4.6.2.post1 contourpy-1.3.1 cycler-0.12.1 fastapi-0.115.5 fonttools-4.55.0 graphviz-0.20.3 greenlet-3.1.1 h11-0.14.0 h2-4.1.0 hpack-4.0.0 httpcore-1.0.7 httpx-0.28.0 hyperframe-6.0.1 iam-units-2023.9.12 ixmp4-0.9.7 kiwisolver-1.4.7 lxml-5.3.0 markdown-it-py-3.0.0 matplotlib-3.9.3 mdurl-0.1.2 message_ix-3.9.1.dev55+g5c0b44f mizani-0.13.0 multimethod-1.12 mypy-1.13.0 mypy-extensions-1.0.0 pandera-0.21.0 patsy-1.0.1 pillow-11.0.0 plotnine-0.14.3 psycopg-3.2.3 psycopg-binary-3.2.3 pyam-iamc-2.3.0 pydantic-2.10.2 pydantic-core-2.27.1 pydantic-settings-2.6.1 pyparsing-3.2.0 python-dotenv-1.0.1 rich-13.9.4 scipy-1.14.1 sdmx1-2.19.1 seaborn-0.13.2 shellingham-1.5.4 sniffio-1.3.1 starlette-0.41.3 statsmodels-0.14.4 toml-0.10.2 typeguard-4.4.1 typer-0.14.0 typing-inspect-0.9.0 wquantiles-0.6 wrapt-1.17.0 [rtd-command-info] start-time: 2024-12-02T08:39:56.830198Z, end-time: 2024-12-02T08:39:56.886843Z, duration: 0, exit-code: 0 cat doc/conf.py # Configuration file for the Sphinx documentation builder. # # This file only contains a selection of the most common options. For a full # list see the documentation: # https://www.sphinx-doc.org/en/master/usage/configuration.html import os from importlib.metadata import version as get_version from pathlib import Path from typing import Optional # -- Project information --------------------------------------------------------------- project = "MESSAGEix" copyright = "2018–2024, IIASA Energy, Climate, and Environment (ECE) Program" author = "MESSAGEix Developers" # The major project version, used as the replacement for |version|. version = get_version("message_ix") # The full project version, used as the replacement for |release| and in HTML templates. release = version # -- General configuration ------------------------------------------------------------- # Add any Sphinx extension module names here, as strings. They can be extensions coming # with Sphinx (named 'sphinx.ext.*') or your custom ones. extensions = [ # First-party "sphinx.ext.autodoc", "sphinx.ext.doctest", "sphinx.ext.extlinks", "sphinx.ext.intersphinx", "sphinx.ext.todo", "sphinx.ext.coverage", "sphinx.ext.mathjax", "sphinxcontrib.bibtex", "sphinx.ext.autosummary", "sphinx.ext.napoleon", # Others "genno.compat.sphinx.rewrite_refs", "ixmp.util.sphinx_linkcode_github", "message_ix.util.sphinx_gams", ] # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] # List of patterns, relative to source directory, that match files and directories to # ignore when looking for source files. This pattern also affects html_static_path and # html_extra_path. exclude_patterns = ["_build", "README.rst"] nitpicky = True # A string of reStructuredText that will be included at the beginning of every source # file that is read. rst_prolog = r""" .. role:: py(code) :language: python .. role:: strike .. role:: underline .. |MESSAGEix| replace:: MESSAGE\ :emphasis:`ix` .. |ixmp| replace:: :emphasis:`ix` modeling platform .. |IIASA| raw:: html IIASA """ # noqa: E501 # -- Options for HTML output ----------------------------------------------------------- # A list of CSS files. html_css_files = ["custom.css"] html_favicon = "_static/messageix-favicon.svg" # The name of an image file (relative to this directory) to place at the top of the # sidebar. html_logo = "_static/combined-logo-white.svg" # Add any paths that contain custom static files (such as style sheets) here, relative # to this directory. They are copied after the builtin static files, so a file named # "default.css" will overwrite the builtin "default.css". html_static_path = ["_static"] # The theme to use for HTML and HTML Help pages. html_theme = "sphinx_rtd_theme" html_theme_options = {"logo_only": True} # Define the canonical URL if you are using a custom domain on Read the Docs html_baseurl = os.environ.get("READTHEDOCS_CANONICAL_URL", "") # Tell Jinja2 templates the build is running on Read the Docs if os.environ.get("READTHEDOCS", "") == "True": if "html_context" not in globals(): html_context = {} html_context["READTHEDOCS"] = True # -- Options for LaTeX output ---------------------------------------------------------- # The LaTeX engine to build the docs. latex_engine = "lualatex" # -- Options for genno.compat.sphinx.rewrite_refs -------------------------------------- # When base classes in upstream (genno, ixmp) packages are inherited in message_ix, # Sphinx will not properly resolve relative references within docstrings of methods of # the former. Some of these aliases are to allow Sphinx to locate the correct targets. reference_aliases = { # genno "AnyQuantity": ":data:`genno.core.quantity.AnyQuantity`", "Computer": "genno.Computer", "Graph": "genno.core.graph.Graph", "Operator": "genno.Operator", "KeyLike": ":data:`genno.core.key.KeyLike`", "iter_keys": "genno.core.key.iter_keys", "single_key": "genno.core.key.single_key", r"(genno\.|)Key(?=Seq|[^\w]|$)": "genno.core.key.Key", r"(genno\.|)Quantity": "genno.core.attrseries.AttrSeries", # ixmp "ItemType": "ixmp.backend.ItemType", "Platform": "ixmp.Platform", "TimeSeries": "ixmp.TimeSeries", # # Many projects (including Sphinx itself!) do not have a py:module target in for the # top-level module in objects.inv. Resolve these using :doc:`index` or similar for # each project. "dask$": ":std:doc:`dask:index`", "plotnine$": ":class:`plotnine.ggplot`", } # -- Options for ixmp.util.sphinx_linkcode_github / sphinx.ext.linkcode ---------------- linkcode_github_repo_slug = "iiasa/message_ix" # -- Options for message_ix.util.sphinx_gams ------------------------------------------- gams_source_dir = Path(__file__).parents[1].joinpath("message_ix", "model") gams_target_dir = "model" # -- Options for sphinx.ext.extlinks --------------------------------------------------- # Link to "main" blob if a non-release version of the docs is being built; otherwise # to the tag for the release gh_ref = "main" if ".dev" in version else f"v{version}" extlinks = { "issue": ("https://github.com/iiasa/message_ix/issue/%s", "#%s"), "pull": ("https://github.com/iiasa/message_ix/pull/%s", "PR #%s"), "tut": (f"https://github.com/iiasa/message_ix/blob/{gh_ref}/tutorial/%s", None), } # -- Options for sphinx.ext.intersphinx ------------------------------------------------ def local_inv(name: str, *parts: str) -> Optional[str]: """Construct the path to a local intersphinx inventory.""" from importlib.util import find_spec spec = find_spec(name) if spec is None: return None if 0 == len(parts): parts = ("doc", "_build", "html") assert spec.origin is not None return str(Path(spec.origin).parents[1].joinpath(*parts, "objects.inv")) intersphinx_mapping = { "dask": ("https://docs.dask.org/en/stable/", None), "genno": ("https://genno.readthedocs.io/en/latest", (local_inv("genno"), None)), "ixmp": ( "https://docs.messageix.org/projects/ixmp/en/latest/", (local_inv("ixmp"), None), ), "message-ix-models": ( "https://docs.messageix.org/projects/models/en/latest/", None, ), "message_doc": ("https://docs.messageix.org/projects/global/en/latest/", None), "pandas": ("https://pandas.pydata.org/pandas-docs/stable/", None), "pint": ("https://pint.readthedocs.io/en/stable/", None), "plotnine": ("https://plotnine.org", None), "pyam": ("https://pyam-iamc.readthedocs.io/en/stable/", None), "python": ("https://docs.python.org/3/", None), "sphinx": ("https://www.sphinx-doc.org/en/master/", None), "xarray": ("https://docs.xarray.dev/en/stable", None), } # -- Options for sphinx.ext.mathjax ---------------------------------------------------- # See https://github.com/iiasa/message_ix/pull/721#pullrequestreview-1497907368: # prefer to write \text{} explicitly # TODO read at least some of these from message_ix.models # TODO complete list # TODO also add these to a LaTeX preamble text_macros = """ACT STORAGE STORAGE_CHARGE duration_time_rel input map_time_commodity_storage storage_initial storage_self_discharge""" mathjax3_config = dict( tex=dict( macros={k.replace("_", ""): r"\text{" + k + "}" for k in text_macros.split()}, ), ) # -- Options for sphinx.ext.napoleon --------------------------------------------------- napoleon_preprocess_types = True napoleon_type_aliases = { # Standard library "callable": ":ref:`callable `", "iterable": ":class:`collections.abc.Iterable`", "mapping": ":class:`collections.abc.Mapping`", "sequence": ":class:`collections.abc.Sequence`", # Upstream "DataFrame": "pandas.DataFrame", "Series": "pandas.Series", "Quantity": "genno.Quantity", } # -- Options for sphinx.ext.todo ------------------------------------------------------- # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True # -- Options for sphinxcontrib.bibtex -------------------------------------------------- bibtex_bibfiles = ["references.bib"] [rtd-command-info] start-time: 2024-12-02T08:39:56.956665Z, end-time: 2024-12-02T08:40:47.219806Z, duration: 50, exit-code: 0 python -m sphinx -T -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v8.1.3 loading translations [en]... done making output directory... done linkcode base URL: https://github.com/iiasa/message_ix/blob/HEAD generating GAMS sources... [ 4%] MESSAGE_master generating GAMS sources... [ 9%] MESSAGE-MACRO_run generating GAMS sources... [ 13%] MACRO_run generating GAMS sources... [ 17%] version generating GAMS sources... [ 22%] MESSAGE_run generating GAMS sources... [ 26%] MESSAGE/reporting_for_MACRO generating GAMS sources... [ 30%] MESSAGE/auxiliary_settings generating GAMS sources... [ 35%] MESSAGE/reporting generating GAMS sources... [ 39%] MESSAGE/model_solve generating GAMS sources... [ 43%] MESSAGE/version_check generating GAMS sources... [ 48%] MESSAGE/model_setup generating GAMS sources... [ 52%] MESSAGE/model_core generating GAMS sources... [ 57%] MESSAGE/scaling_investment_costs generating GAMS sources... [ 61%] MESSAGE/data_load generating GAMS sources... [ 65%] MESSAGE/sets_maps_def generating GAMS sources... [ 70%] MESSAGE/parameter_def generating GAMS sources... [ 74%] includes/period_parameter_assignment generating GAMS sources... [ 78%] includes/aux_computation_time generating GAMS sources... [ 83%] MACRO/macro_reporting generating GAMS sources... [ 87%] MACRO/macro_core generating GAMS sources... [ 91%] MACRO/macro_solve generating GAMS sources... [ 96%] MACRO/macro_data_load generating GAMS sources... [100%] MACRO/macro_calibration checking bibtex cache... out of date parsing bibtex file /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/references.bib... parsed 13 entries loading intersphinx inventory 'dask' from https://docs.dask.org/en/stable/objects.inv ... loading intersphinx inventory 'genno' from /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv ... loading intersphinx inventory 'ixmp' from /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv ... loading intersphinx inventory 'genno' from https://genno.readthedocs.io/en/latest/objects.inv ... loading intersphinx inventory 'message-ix-models' from https://docs.messageix.org/projects/models/en/latest/objects.inv ... loading intersphinx inventory 'ixmp' from https://docs.messageix.org/projects/ixmp/en/latest/objects.inv ... loading intersphinx inventory 'message_doc' from https://docs.messageix.org/projects/global/en/latest/objects.inv ... loading intersphinx inventory 'pandas' from https://pandas.pydata.org/pandas-docs/stable/objects.inv ... encountered some issues with some of the inventories, but they had working alternatives: loading intersphinx inventory 'pint' from https://pint.readthedocs.io/en/stable/objects.inv ... intersphinx inventory '/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv' not fetchable due to : [Errno 2] No such file or directory: '/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv' encountered some issues with some of the inventories, but they had working alternatives: intersphinx inventory '/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv' not fetchable due to : [Errno 2] No such file or directory: '/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv' loading intersphinx inventory 'pyam' from https://pyam-iamc.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'plotnine' from https://plotnine.org/objects.inv ... loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv ... loading intersphinx inventory 'sphinx' from https://www.sphinx-doc.org/en/master/objects.inv ... loading intersphinx inventory 'xarray' from https://docs.xarray.dev/en/stable/objects.inv ... [autosummary] generating autosummary for: api.rst, bibliography.rst, contrib/cla.rst, contrib/release.rst, contrib/tutorial.rst, contrib/version.rst, contrib/video.rst, contrib/video/install.rst, contributing.rst, debugging.rst, ..., prereqs.rst, reporting.rst, rmessageix.rst, sharing.rst, time.rst, tools/add_year.rst, tools/lp_diag.rst, tutorials.rst, usage.rst, whatsnew.rst WARNING: Failed to import message_ix.testing. Possible hints: * AttributeError: module 'message_ix' has no attribute 'testing' * ModuleNotFoundError: No module named 'pytest' WARNING: Failed to import message_ix.testing.nightly. Possible hints: * AttributeError: module 'message_ix' has no attribute 'testing' * ModuleNotFoundError: No module named 'pytest' building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 37 source files that are out of date updating environment: [new config] 37 added, 0 changed, 0 removed reading sources... [ 3%] api Cannot locate code for 'message_ix.models.DEFAULT_CPLEX_OPTIONS' or parent class/module Cannot locate code for 'message_ix.models.DIMS' or parent class/module reading sources... [ 5%] bibliography reading sources... [ 8%] contrib/cla reading sources... [ 11%] contrib/release reading sources... [ 14%] contrib/tutorial reading sources... [ 16%] contrib/version reading sources... [ 19%] contrib/video reading sources... [ 22%] contrib/video/install reading sources... [ 24%] contributing reading sources... [ 27%] debugging reading sources... [ 30%] efficiency reading sources... [ 32%] faq reading sources... [ 35%] framework reading sources... [ 38%] index reading sources... [ 41%] install reading sources... [ 43%] install-adv reading sources... [ 46%] macro reading sources... [ 49%] model/MACRO/macro_core reading sources... [ 51%] model/MESSAGE-MACRO_run reading sources... [ 54%] model/MESSAGE/model_core reading sources... [ 57%] model/MESSAGE/model_solve reading sources... [ 59%] model/MESSAGE/parameter_def reading sources... [ 62%] model/MESSAGE/reporting reading sources... [ 65%] model/MESSAGE/scaling_investment_costs reading sources... [ 68%] model/MESSAGE/sets_maps_def reading sources... [ 70%] model/MESSAGE_run reading sources... [ 73%] notice reading sources... [ 76%] prereqs reading sources... [ 78%] reporting Matplotlib is building the font cache; this may take a moment. reading sources... [ 81%] rmessageix reading sources... [ 84%] sharing reading sources... [ 86%] time reading sources... [ 89%] tools/add_year reading sources... [ 92%] tools/lp_diag reading sources... [ 95%] tutorials reading sources... [ 97%] usage reading sources... [100%] whatsnew /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/api.rst:24: WARNING: autosummary: failed to import ixmp.testing.make_dantzig. Possible hints: * AttributeError: testing * ModuleNotFoundError: No module named 'pytest' WARNING: autodoc: failed to import module 'testing' from module 'message_ix'; the following exception was raised: No module named 'pytest' [autodoc.import_object] WARNING: autodoc: failed to import module 'testing.nightly' from module 'message_ix'; the following exception was raised: No module named 'pytest' [autodoc.import_object] /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/index.rst:129: WARNING: toctree contains reference to nonexisting document 'governance' [toc.not_readable] /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/index.rst:129: WARNING: toctree contains reference to nonexisting document 'security policy' [toc.not_readable] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/_readthedocs/html/_static/basic.css Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/_readthedocs/html/_static/language_data.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/_readthedocs/html/_static/documentation_options.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/_readthedocs/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 3%] api writing output... [ 5%] bibliography writing output... [ 8%] contrib/cla writing output... [ 11%] contrib/release writing output... [ 14%] contrib/tutorial writing output... [ 16%] contrib/version writing output... [ 19%] contrib/video writing output... [ 22%] contrib/video/install writing output... [ 24%] contributing writing output... [ 27%] debugging writing output... [ 30%] efficiency writing output... [ 32%] faq writing output... [ 35%] framework writing output... [ 38%] index writing output... [ 41%] install writing output... [ 43%] install-adv writing output... [ 46%] macro writing output... [ 49%] model/MACRO/macro_core writing output... [ 51%] model/MESSAGE-MACRO_run writing output... [ 54%] model/MESSAGE/model_core writing output... [ 57%] model/MESSAGE/model_solve writing output... [ 59%] model/MESSAGE/parameter_def writing output... [ 62%] model/MESSAGE/reporting writing output... [ 65%] model/MESSAGE/scaling_investment_costs writing output... [ 68%] model/MESSAGE/sets_maps_def writing output... [ 70%] model/MESSAGE_run writing output... [ 73%] notice writing output... [ 76%] prereqs writing output... [ 78%] reporting writing output... [ 81%] rmessageix writing output... [ 84%] sharing writing output... [ 86%] time writing output... [ 89%] tools/add_year writing output... [ 92%] tools/lp_diag writing output... [ 95%] tutorials writing output... [ 97%] usage writing output... [100%] whatsnew /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/message_ix/core.py:docstring of ixmp.core.timeseries.TimeSeries.add_timeseries:14: WARNING: py:meth reference target not found: add_timeslice [ref.meth] /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/message_ix/core.py:docstring of ixmp.core.timeseries.TimeSeries.add_timeseries:14: WARNING: py:meth reference target not found: timeslices [ref.meth] /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/message_ix/core.py:docstring of ixmp.core.scenario.Scenario.check_out:5: WARNING: py:obj reference target not found: util.maybe_check_out [ref.obj] /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/message_ix/core.py:docstring of 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/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/message_ix/models.py:docstring of message_ix.models.Item.expr:1: WARNING: py:class reference target not found: dataclasses.InitVar [ref.class] /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/message_ix/util/__init__.py:docstring of message_ix.util.copy_model:10: WARNING: py:class reference target not found: Path [ref.class] /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/prereqs.rst:84: WARNING: undefined label: 'install-adv' [ref.ref] /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/message_ix/report/__init__.py:docstring of genno.core.computer.Computer.aggregate:28: WARNING: py:meth reference target not found: genno.operator.aggregate [ref.meth] 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[rtd-command-info] start-time: 2024-12-02T08:40:47.313585Z, end-time: 2024-12-02T08:41:03.409854Z, duration: 16, exit-code: 0 python -m sphinx -T -b epub -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/epub Running Sphinx v8.1.3 loading translations [en]... done making output directory... done linkcode base URL: https://github.com/iiasa/message_ix/blob/HEAD generating GAMS sources... [ 4%] MESSAGE_master generating GAMS sources... [ 9%] MESSAGE-MACRO_run generating GAMS sources... [ 13%] MACRO_run generating GAMS sources... [ 17%] version generating GAMS sources... [ 22%] MESSAGE_run generating GAMS sources... [ 26%] MESSAGE/reporting_for_MACRO generating GAMS sources... [ 30%] MESSAGE/auxiliary_settings generating GAMS sources... [ 35%] MESSAGE/reporting generating GAMS sources... [ 39%] MESSAGE/model_solve generating GAMS sources... [ 43%] MESSAGE/version_check generating GAMS sources... [ 48%] MESSAGE/model_setup generating GAMS sources... 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[100%] MACRO/macro_calibration loading pickled environment... checking bibtex cache... up to date The configuration has changed (5 options: 'autodoc_type_aliases', 'html_css_files', 'html_permalinks_icon', 'jquery_use_sri', 'linkcode_resolve') done loading intersphinx inventory 'genno' from /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv ... loading intersphinx inventory 'ixmp' from /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv ... encountered some issues with some of the inventories, but they had working alternatives: encountered some issues with some of the inventories, but they had working alternatives: intersphinx inventory '/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv' not fetchable due to : [Errno 2] No such file or directory: '/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv' intersphinx inventory '/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv' not fetchable due to : [Errno 2] No such file or directory: '/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.11/site-packages/doc/_build/html/objects.inv' [autosummary] generating autosummary for: api.rst, bibliography.rst, contrib/cla.rst, contrib/release.rst, contrib/tutorial.rst, contrib/version.rst, contrib/video.rst, contrib/video/install.rst, contributing.rst, debugging.rst, ..., prereqs.rst, reporting.rst, rmessageix.rst, sharing.rst, time.rst, tools/add_year.rst, tools/lp_diag.rst, tutorials.rst, usage.rst, whatsnew.rst WARNING: Failed to import message_ix.testing. Possible hints: * AttributeError: module 'message_ix' has no attribute 'testing' * ModuleNotFoundError: No module named 'pytest' WARNING: Failed to import message_ix.testing.nightly. Possible hints: * AttributeError: module 'message_ix' has no attribute 'testing' * ModuleNotFoundError: No module named 'pytest' building [mo]: targets for 0 po files that are out of date writing output... building [epub]: targets for 37 source files that are out of date updating environment: [config changed ('autodoc_type_aliases')] 37 added, 1 changed, 0 removed reading sources... [ 3%] api Cannot locate code for 'message_ix.models.DEFAULT_CPLEX_OPTIONS' or parent class/module Cannot locate code for 'message_ix.models.DIMS' or parent class/module reading sources... [ 5%] bibliography reading sources... [ 8%] contrib/cla reading sources... [ 11%] contrib/release reading sources... [ 14%] contrib/tutorial reading sources... [ 16%] contrib/version reading sources... [ 19%] contrib/video reading sources... 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Possible hints: * AttributeError: testing * ModuleNotFoundError: No module named 'pytest' WARNING: autodoc: failed to import module 'testing' from module 'message_ix'; the following exception was raised: No module named 'pytest' [autodoc.import_object] WARNING: autodoc: failed to import module 'testing.nightly' from module 'message_ix'; the following exception was raised: No module named 'pytest' [autodoc.import_object] /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/index.rst:129: WARNING: toctree contains reference to nonexisting document 'governance' [toc.not_readable] /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/doc/index.rst:129: WARNING: toctree contains reference to nonexisting document 'security policy' [toc.not_readable] looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/_readthedocs/epub/_static/basic.css Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/_readthedocs/epub/_static/language_data.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/_readthedocs/epub/_static/documentation_options.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/_readthedocs/epub/_static/epub.css copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 3%] api writing output... [ 5%] bibliography writing output... [ 8%] contrib/cla writing output... [ 11%] contrib/release writing output... 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WARNING: unknown mimetype for _images/10.1016-j.est.2022.104587.JPG, ignoring [epub.unknown_project_files] WARNING: unknown mimetype for _static/usage_figures/10.1016-j.est.2022.104587.JPG, ignoring [epub.unknown_project_files] Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/_readthedocs/epub/content.opf writing nav.xhtml file... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/_readthedocs/epub/nav.xhtml writing toc.ncx file... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/_readthedocs/epub/toc.ncx writing MESSAGEix.epub file... build succeeded, 44 warnings. The ePub file is in ../_readthedocs/epub.