Read the Docs build information
Build id: 255506
Project: tiledb-inc-tiledb
Version: latest
Commit: fa46641ec633ad35053115668b3e09665b3374e6
Date: 2019-11-01T18:24:12.895967Z
State: finished
Success: True


[rtd-command-info] start-time: 2019-11-01T18:24:14.259718Z, end-time: 2019-11-01T18:24:14.283605Z, duration: 0, exit-code: 0
git remote set-url origin https://github.com/TileDB-Inc/TileDB.git


[rtd-command-info] start-time: 2019-11-01T18:24:14.363907Z, end-time: 2019-11-01T18:24:15.758527Z, duration: 1, exit-code: 0
git fetch origin --force --tags --prune --prune-tags --depth 50
From https://github.com/TileDB-Inc/TileDB
 - [deleted]           (none)     -> origin/ihn/fix_md_gcc48
   25c2c561..fa46641e  dev        -> origin/dev

[rtd-command-info] start-time: 2019-11-01T18:24:16.075429Z, end-time: 2019-11-01T18:24:16.232595Z, duration: 0, exit-code: 0
git checkout --force origin/dev
Previous HEAD position was 25c2c561 Fix metadata bug on GCC 4.8 w/ consecutive same-length keys (#1412)
HEAD is now at fa46641e Doc fixes (#1414)

[rtd-command-info] start-time: 2019-11-01T18:24:16.328879Z, end-time: 2019-11-01T18:24:16.355947Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2019-11-01T18:24:20.177847Z, end-time: 2019-11-01T18:26:55.270774Z, duration: 155, exit-code: 0
conda env create --quiet --name latest --file doc/source/conda-env.yml
Solving environment: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting sphinxcontrib-contentui
  Downloading https://files.pythonhosted.org/packages/d6/38/eee534e66909e2f3d53f5eee0a790bea90b73dcb6e88d5d2c1cfcd90f4e1/sphinxcontrib_contentui-0.2.4-py3-none-any.whl
Requirement already satisfied: Sphinx>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (2.2.1)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (41.6.0.post20191029)
Requirement already satisfied: sphinxcontrib-qthelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (1.0.2)
Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (19.2)
Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (2.7.0)
Requirement already satisfied: sphinxcontrib-applehelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (1.0.1)
Requirement already satisfied: sphinxcontrib-devhelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (1.0.1)
Requirement already satisfied: sphinxcontrib-jsmath in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (1.0.1)
Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (1.1.3)
Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (2.4.2)
Requirement already satisfied: docutils>=0.12 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (0.15.2)
Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (2.10.3)
Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (0.7.12)
Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (1.1.0)
Requirement already satisfied: requests>=2.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (2.22.0)
Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (2.0.0)
Requirement already satisfied: sphinxcontrib-htmlhelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (1.0.2)
Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from packaging->Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (2.4.2)
Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from packaging->Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (1.12.0)
Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from babel!=2.0,>=1.3->Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (2019.3)
Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Jinja2>=2.3->Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (1.1.1)
Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests>=2.5.0->Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (2019.9.11)
Requirement already satisfied: idna<2.9,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests>=2.5.0->Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (2.8)
Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests>=2.5.0->Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (1.25.6)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests>=2.5.0->Sphinx>=2.0->sphinxcontrib-contentui->-r /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/condaenv.bXnOul.requirements.txt (line 1)) (3.0.4)
Installing collected packages: sphinxcontrib-contentui
Successfully installed sphinxcontrib-contentui-0.2.4

[rtd-command-info] start-time: 2019-11-01T18:26:55.376674Z, end-time: 2019-11-01T18:27:19.861868Z, duration: 24, exit-code: 0
conda install --yes --quiet --name latest mock pillow sphinx sphinx_rtd_theme
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest

  added / updated specs: 
    - mock
    - pillow
    - sphinx
    - sphinx_rtd_theme


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    libtiff-4.0.9              |       he85c1e1_2         567 KB
    freetype-2.9.1             |       h8a8886c_1         822 KB
    sphinx_rtd_theme-0.4.3     |             py_0         5.1 MB
    jpeg-9b                    |       h024ee3a_2         248 KB
    mock-3.0.5                 |           py36_0          47 KB
    certifi-2019.9.11          |           py36_0         154 KB
    pillow-5.4.1               |   py36h34e0f95_0         627 KB
    olefile-0.46               |           py36_0          48 KB
    openssl-1.1.1d             |       h7b6447c_3         3.7 MB
    libpng-1.6.37              |       hbc83047_0         364 KB
    sphinx-2.2.1               |             py_0         1.4 MB
    ca-certificates-2019.10.16 |                0         131 KB
    ------------------------------------------------------------
                                           Total:        13.2 MB

The following NEW packages will be INSTALLED:

    freetype:         2.9.1-h8a8886c_1                
    jpeg:             9b-h024ee3a_2                   
    libpng:           1.6.37-hbc83047_0               
    libtiff:          4.0.9-he85c1e1_2                
    mock:             3.0.5-py36_0                    
    olefile:          0.46-py36_0                     
    pillow:           5.4.1-py36h34e0f95_0            
    sphinx_rtd_theme: 0.4.3-py_0                      

The following packages will be UPDATED:

    ca-certificates:  2019.9.11-hecc5488_0 conda-forge --> 2019.10.16-0     
    certifi:          2019.9.11-py36_0     conda-forge --> 2019.9.11-py36_0 
    openssl:          1.1.1c-h516909a_0    conda-forge --> 1.1.1d-h7b6447c_3
    sphinx:           2.2.1-py_0           conda-forge --> 2.2.1-py_0       

Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done

[rtd-command-info] start-time: 2019-11-01T18:27:19.958795Z, end-time: 2019-11-01T18:27:21.536555Z, duration: 1, exit-code: 0
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/bin/python -m pip install -U --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/.cache/pip recommonmark readthedocs-sphinx-ext
Collecting recommonmark
  Using cached https://files.pythonhosted.org/packages/94/de/334aaf73df8c0e77fb07f883d1e274344526196c137ef3479cb5e5aef086/recommonmark-0.6.0-py2.py3-none-any.whl
Collecting readthedocs-sphinx-ext
  Using cached https://files.pythonhosted.org/packages/51/43/a5a98d9aec325b2824bdf504fa446ae876d0909d03e28667018f9eb01bcd/readthedocs_sphinx_ext-1.0.0-py2.py3-none-any.whl
Requirement already satisfied, skipping upgrade: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from recommonmark) (0.15.2)
Collecting commonmark>=0.8.1
  Using cached https://files.pythonhosted.org/packages/b1/92/dfd892312d822f36c55366118b95d914e5f16de11044a27cf10a7d71bbbf/commonmark-0.9.1-py2.py3-none-any.whl
Requirement already satisfied, skipping upgrade: sphinx>=1.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from recommonmark) (2.2.1)
Requirement already satisfied, skipping upgrade: requests in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from readthedocs-sphinx-ext) (2.22.0)
Requirement already satisfied, skipping upgrade: Jinja2>=2.9 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from readthedocs-sphinx-ext) (2.10.3)
Requirement already satisfied, skipping upgrade: packaging in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (19.2)
Requirement already satisfied, skipping upgrade: sphinxcontrib-qthelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.0.2)
Requirement already satisfied, skipping upgrade: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.1.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib-applehelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.0.1)
Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (2.4.2)
Requirement already satisfied, skipping upgrade: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (41.6.0.post20191029)
Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (2.7.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.1.3)
Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (2.0.0)
Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (0.7.12)
Requirement already satisfied, skipping upgrade: sphinxcontrib-htmlhelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.0.2)
Requirement already satisfied, skipping upgrade: sphinxcontrib-devhelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.0.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib-jsmath in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from sphinx>=1.3.1->recommonmark) (1.0.1)
Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests->readthedocs-sphinx-ext) (3.0.4)
Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests->readthedocs-sphinx-ext) (1.25.6)
Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests->readthedocs-sphinx-ext) (2019.9.11)
Requirement already satisfied, skipping upgrade: idna<2.9,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from requests->readthedocs-sphinx-ext) (2.8)
Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from Jinja2>=2.9->readthedocs-sphinx-ext) (1.1.1)
Requirement already satisfied, skipping upgrade: six in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from packaging->sphinx>=1.3.1->recommonmark) (1.12.0)
Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from packaging->sphinx>=1.3.1->recommonmark) (2.4.2)
Requirement already satisfied, skipping upgrade: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages (from babel!=2.0,>=1.3->sphinx>=1.3.1->recommonmark) (2019.3)
Installing collected packages: commonmark, recommonmark, readthedocs-sphinx-ext
Successfully installed commonmark-0.9.1 readthedocs-sphinx-ext-1.0.0 recommonmark-0.6.0

[rtd-command-info] start-time: 2019-11-01T18:27:29.963822Z, end-time: 2019-11-01T18:27:30.311904Z, duration: 0, exit-code: 0
cat doc/source/conf.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# TileDB documentation build configuration file, created by
# sphinx-quickstart on Mon Feb  5 10:08:37 2018.
#

# -- Imports configuration -------------------------------------------------

import os
import subprocess
import sys
from os.path import abspath, join, dirname

sys.path.insert(0, abspath(join(dirname(__file__))))

# -- ReadTheDocs configuration ---------------------------------------------

# Special handling on ReadTheDocs builds.
# Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py
readthedocs = os.environ.get('READTHEDOCS', None) == 'True'
rtd_version = os.environ.get('READTHEDOCS_VERSION', 'latest')
rtd_version = rtd_version if rtd_version in ['stable', 'latest'] else 'stable'

# On RTD, build the Doxygen XML files.
if readthedocs:
    # Build docs
    subprocess.check_call('''
        mkdir ../../build;
        cd ../../build;
        ../bootstrap;
        make doc;
    ''', shell=True)


# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.intersphinx',
    'sphinxcontrib.contentui',
    'breathe'
]

if readthedocs:
    # Mapping for linking between RTD subprojects.
    intersphinx_mapping = {
        'tiledb': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/' % rtd_version, None),
        'tiledb-py': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/' % rtd_version, None)
    }

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
source_suffix = '.rst'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = 'TileDB'
copyright = '2018 TileDB, Inc'
author = 'TileDB, Inc.'

# The short X.Y version.
version = '1.6'
# The full version, including alpha/beta/rc tags.
release = '1.6.0'

# Breathe extension configuration.
tiledb_dir = '../../'
doxygen_xml_dir = tiledb_dir + 'build/xml/'
breathe_projects = {'TileDB-C': doxygen_xml_dir, 'TileDB-C++': doxygen_xml_dir}
breathe_default_project = 'TileDB-C'
breathe_projects_source = {
    'TileDB-C': (tiledb_dir + 'tiledb/sm/c_api/', ['tiledb.h']),
    'TileDB-C++': (tiledb_dir + 'tiledb/sm/cpp_api/', ['tiledb'])
}
breathe_domain_by_file_pattern = {
    '*/c_api/tiledb.h': 'c',
    '*/cpp_api/tiledb': 'cpp'
}

# Allow parsing TILEDB_DEPRECATED in C++ function signatures.
cpp_id_attributes = ['TILEDB_DEPRECATED']

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = []

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'friendly'

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False


# -- Options for HTML output ----------------------------------------------

html_static_path = ['_static']
html_logo = '_static/tileDB_uppercase_600_112.png'
html_favicon = '_static/favicon.ico'

if readthedocs:
    html_theme = 'default'
else:
    import sphinx_rtd_theme
    html_theme = 'sphinx_rtd_theme'
    html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# -- Options for HTMLHelp output ------------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = 'TileDBdoc'


# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'TileDB.tex', 'TileDB Documentation',
     'TileDB, Inc.', 'manual'),
]


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'tiledb', 'TileDB Documentation',
     [author], 1)
]


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'TileDB', 'TileDB Documentation',
     author, 'TileDB', 'One line description of project.',
     'Miscellaneous'),
]

# -- Custom Document processing ----------------------------------------------

# Generate the sidebar automatically so that it is identical across all subprojects.
# This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs
import gensidebar
gensidebar.generate_sidebar({'on_rtd': readthedocs, 'rtd_version': rtd_version}, 'tiledb')

# Replace C/C++ source examples path
def replaceText(app, docname, source):
    result = source[0]
    for key in app.config.text_replacements:
        result = result.replace(key, app.config.text_replacements[key])
    source[0] = result

text_replacements = {
    "{source_examples_path}" : "../../examples",
    "{tiledb_src_root_url}" : "https://github.com/TileDB-Inc/TileDB/blob/dev",
    "{tiledb_py_src_root_url}" : "https://github.com/TileDB-Inc/TileDB-Py/blob/dev",
    "{tiledb_R_src_root_url}" : "https://github.com/TileDB-Inc/TileDB-R/blob/master",
    "{tiledb_go_src_root_url}" : "https://github.com/TileDB-Inc/TileDB-Go/blob/master"
}

# -- Custom setup -----------------------------------------------------------

def add_custom_js(app):
    app.add_javascript('custom.js')

def setup(app):
    app.add_config_value('text_replacements', {}, True)
    app.connect('source-read', replaceText)
    app.add_stylesheet('custom.css')

    # Use this event so that our custom JS gets included *after* the ContentUI
    # extension adds its JS, otherwise we can't override its behavior.
    app.connect('builder-inited', add_custom_js)




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://media.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://media.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("1.6.3", "/en/1.6.3/"),
    ("1.6.2", "/en/1.6.2/"),
    ("1.6.0", "/en/1.6.0/"),
    ("1.5.1", "/en/1.5.1/"),
    ("1.5.0", "/en/1.5.0/"),
    ("1.4.2", "/en/1.4.2/"),
    ("1.4.1", "/en/1.4.1/"),
    ("1.4.0", "/en/1.4.0/"),
    ("1.3.2", "/en/1.3.2/"),
    ("1.3.1", "/en/1.3.1/"),
    ("1.3.0", "/en/1.3.0/"),
    ("sp-52", "/en/sp-52/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
        ("tiledb-inc-tiledb-py", "https://docs.tiledb.io/projects/tiledb-py/en/stable/"),
    ],
    'slug': 'tiledb-inc-tiledb',
    'name': u'TileDB',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://docs.tiledb.io/en/stable/',
    'analytics_code': '',
    'single_version': False,
    'conf_py_path': '/doc/source/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'TileDB-Inc',
    'github_repo': 'TileDB',
    'github_version': 'dev',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'dev',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'dev',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': 'fa46641e',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

[rtd-command-info] start-time: 2019-11-01T18:27:30.423219Z, end-time: 2019-11-01T18:28:03.974614Z, duration: 33, exit-code: 0
python /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v2.2.1
mkdir: cannot create directory ‘../../build’: File exists
-- The C compiler identification is GNU 7.3.0
-- The CXX compiler identification is GNU 7.3.0
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/g++
-- Check for working CXX compiler: /usr/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Starting TileDB superbuild.
-- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) 
-- Adding Spdlog as an external project
-- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so -- OpenSSL crypto: /usr/lib/x86_64-linux-gnu/libcrypto.so -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/build/externals/install;/usr/local/opt/openssl
-- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) 
-- Adding TBB as an external project
-- searching for catch in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/build/externals/src
-- Could NOT find Catch (missing: CATCH_INCLUDE_DIR) 
-- Adding Catch as an external project
-- Not found clang-tidy
-- Not found clang-format
-- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/dist
-- Configuring done
-- Generating done
-- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/build
bootstrap success. Run "make" to build, "make check" to test, or "make -C tiledb install" to install.
[ 50%] Generating API documentation with Doxygen
[100%] Built target doc
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making output directory... done
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/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages/sphinx/util/docutils.py:286: RemovedInSphinx30Warning: function based directive support is now deprecated. Use class based directive instead.
  RemovedInSphinx30Warning)
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intersphinx inventory 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/latest/objects.inv' not fetchable due to <class 'requests.exceptions.HTTPError'>: 404 Client Error: Not Found for url: https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/latest/objects.inv
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/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/checkouts/latest/doc/source/c++-api.rst:123: WARNING: Duplicate declaration, std::vector<std::array<T, N> > tiledb::group_by_cell(const std::vector< T > & buff, uint64_t num_buff)
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The HTML pages are in _build/html.
Copying contentui stylesheet/javascript... done
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/conda/latest/lib/python3.6/site-packages/sphinx_rtd_theme/search.html:20: RemovedInSphinx30Warning: To modify script_files in the theme is deprecated. Please insert a <script> tag directly in your theme instead.
  {{ super() }}