Read the Docs build information
Build id: 254826
Project: cyverse-learning-materials-home
Version: latest
Commit: 46e2b39c7ba1cfde92fe71dca83fd3b9c6519dfd
Date: 2019-10-30T20:31:30.068819Z
State: finished
Success: True
[rtd-command-info] start-time: 2019-10-30T20:31:30.840762Z, end-time: 2019-10-30T20:31:30.851946Z, duration: 0, exit-code: 0
git remote set-url origin https://github.com/CyVerse-learning-materials/learning-materials-home.git
[rtd-command-info] start-time: 2019-10-30T20:31:30.928644Z, end-time: 2019-10-30T20:31:31.457726Z, duration: 0, exit-code: 0
git fetch origin --force --tags --prune --prune-tags --depth 50
From https://github.com/CyVerse-learning-materials/learning-materials-home
7767190..46e2b39 master -> origin/master
[rtd-command-info] start-time: 2019-10-30T20:31:31.676581Z, end-time: 2019-10-30T20:31:31.701111Z, duration: 0, exit-code: 0
git checkout --force origin/master
Previous HEAD position was 7767190 Update tools_and_apps.rst
HEAD is now at 46e2b39 Update README.rst
[rtd-command-info] start-time: 2019-10-30T20:31:31.783496Z, end-time: 2019-10-30T20:31:31.804061Z, duration: 0, exit-code: 0
git clean -d -f -f
Removing _build/
Removing misc/__init__.pyc
Removing misc/cyverse_sphinx_conf.pyc
[rtd-command-info] start-time: 2019-10-30T20:31:32.862245Z, end-time: 2019-10-30T20:31:36.370665Z, duration: 3, exit-code: 0
python2.7 -mvirtualenv --no-site-packages --no-download
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/bin/python2.7
Not overwriting existing python script /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/bin/python (you must use /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/bin/python2.7)
Installing setuptools, pip, wheel...
done.
[rtd-command-info] start-time: 2019-10-30T20:31:36.463953Z, end-time: 2019-10-30T20:31:37.336906Z, duration: 0, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/.cache/pip pip
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (19.3.1)
[rtd-command-info] start-time: 2019-10-30T20:31:38.100673Z, end-time: 2019-10-30T20:31:40.579391Z, duration: 2, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
Requirement already up-to-date: Pygments==2.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (2.3.1)
Requirement already up-to-date: setuptools==41.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (41.0.1)
Requirement already up-to-date: docutils==0.14 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (0.14)
Requirement already up-to-date: mock==1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (1.0.1)
Requirement already up-to-date: pillow==5.4.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (5.4.1)
Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (0.7.12)
Requirement already up-to-date: commonmark==0.8.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (0.8.1)
Requirement already up-to-date: recommonmark==0.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (0.5.0)
Requirement already up-to-date: sphinx<2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (1.8.5)
Requirement already up-to-date: sphinx-rtd-theme<0.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (0.4.3)
Requirement already up-to-date: readthedocs-sphinx-ext<1.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (1.0.0)
Requirement already satisfied, skipping upgrade: future in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from commonmark==0.8.1) (0.18.1)
Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from sphinx<2) (2.0.0)
Requirement already satisfied, skipping upgrade: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from sphinx<2) (1.1.2)
Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from sphinx<2) (2.7.0)
Requirement already satisfied, skipping upgrade: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from sphinx<2) (2.22.0)
Requirement already satisfied, skipping upgrade: packaging in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from sphinx<2) (19.2)
Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from sphinx<2) (2.10.3)
Requirement already satisfied, skipping upgrade: typing; python_version < "3.5" in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from sphinx<2) (3.7.4.1)
Requirement already satisfied, skipping upgrade: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from sphinx<2) (1.1.0)
Requirement already satisfied, skipping upgrade: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from sphinx<2) (1.12.0)
Requirement already satisfied, skipping upgrade: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from babel!=2.0,>=1.3->sphinx<2) (2019.3)
Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx<2) (1.25.6)
Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx<2) (2019.9.11)
Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx<2) (3.0.4)
Requirement already satisfied, skipping upgrade: idna<2.9,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx<2) (2.8)
Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from packaging->sphinx<2) (2.4.2)
Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/envs/latest/lib/python2.7/site-packages (from Jinja2>=2.3->sphinx<2) (1.1.1)
[rtd-command-info] start-time: 2019-10-30T20:31:42.985505Z, end-time: 2019-10-30T20:31:43.295989Z, duration: 0, exit-code: 0
cat conf.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# General information about the project.
import sys
import os
sys.path.insert(0, os.path.dirname(__file__))
from misc.cyverse_sphinx_conf import * # noqa
project = 'CyVerse Learning Center Home'
copyright = '2019, CyVerse'
author = 'CyVerse'
version = '0.1b.0'
release = '0.1b.0'
epub_title = project
epub_author = author
epub_publisher = author
epub_copyright = copyright
# html theme configuration -- see https://sphinx-rtd-theme.readthedocs.io/en/stable/configuring.html
html_theme_options = {
# Table of Content options
'collapse_navigation': True,
'sticky_navigation': True,
'navigation_depth': 4,
'includehidden': True,
'titles_only': False
}
###########################################################################
# auto-created readthedocs.org specific configuration #
###########################################################################
#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#
import importlib
import sys
import os.path
from six import string_types
from sphinx import version_info
# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
if isinstance(source_suffix, string_types):
SUFFIX = source_suffix
elif isinstance(source_suffix, (list, tuple)):
# Sphinx >= 1.3 supports list/tuple to define multiple suffixes
SUFFIX = source_suffix[0]
elif isinstance(source_suffix, dict):
# Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility
else:
# default to .rst
SUFFIX = '.rst'
else:
SUFFIX = '.rst'
# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
html_static_path = []
if os.path.exists('_static'):
html_static_path.append('_static')
# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
(
'html_theme' in globals() and
html_theme in ['default'] and
# Allow people to bail with a hack of having an html_style
'html_style' not in globals()
) or 'html_theme' not in globals()
)
if using_rtd_theme:
theme = importlib.import_module('sphinx_rtd_theme')
html_theme = 'sphinx_rtd_theme'
html_style = None
html_theme_options = {}
if 'html_theme_path' in globals():
html_theme_path.append(theme.get_html_theme_path())
else:
html_theme_path = [theme.get_html_theme_path()]
if globals().get('websupport2_base_url', False):
websupport2_base_url = 'https://readthedocs.com/websupport'
websupport2_static_url = 'https://media.readthedocs.com/'
#Add project information to the template context.
context = {
'using_theme': using_rtd_theme,
'html_theme': html_theme,
'current_version': "latest",
'version_slug': "latest",
'MEDIA_URL': "https://media.readthedocs.com/media/",
'STATIC_URL': "https://media.readthedocs.com/",
'PRODUCTION_DOMAIN': "readthedocs.com",
'versions': [
("latest", "/en/latest/"),
],
'downloads': [
("html", "//readthedocs.com/projects/cyverse-learning-materials-home/downloads/htmlzip/latest/"),
],
'subprojects': [
("cyverse-discovery-environment-guide", "https://learning.cyverse.org/projects/discovery-environment-guide/en/latest/"),
("cyverse-atmosphere-guide", "https://learning.cyverse.org/projects/atmosphere-guide/en/latest/"),
("cyverse-account-creation-quickstart", "https://learning.cyverse.org/projects/cyverse-account-creation-quickstart/en/latest/"),
("cyverse-importing-sradata-quickstart", "https://learning.cyverse.org/projects/cyverse-importing-sradata-quickstart/en/latest/"),
("cyverse-dnasubway-guide", "https://learning.cyverse.org/projects/dnasubway_guide/en/latest/"),
("cyverse-trimmomatic-quickstart", "https://learning.cyverse.org/projects/trimmomatic_quickstart/en/latest/"),
("cyverse-data-store-guide", "https://learning.cyverse.org/projects/data_store_guide/en/latest/"),
("cyverse-fastqc-quickstart", "https://learning.cyverse.org/projects/fastqc_quickstart/en/latest/"),
("cyverse-kallisto-tutorial", "https://learning.cyverse.org/projects/kallisto_tutorial/en/latest/"),
("cyverse-sra-submission-quickstart", "https://learning.cyverse.org/projects/sra_submission_quickstart/en/latest/"),
("cyverse-sciapps-guide", "https://learning.cyverse.org/projects/SciApps Guide/en/latest/"),
("cyverse-documentation-quickstart", "https://learning.cyverse.org/projects/Documentation-Quickstart/en/latest/"),
("cyverse-group-project-quickstart", "https://learning.cyverse.org/projects/cyverse-group-project-quickstart/en/latest/"),
("cyverse-container-camp-workshop-2019", "https://learning.cyverse.org/projects/container_camp_workshop_2019/en/latest/"),
("cyverse-creating-docker-containers-quickstart", "https://learning.cyverse.org/projects/cyverse-creating-docker-containers-quickstart/en/latest/"),
("cyverse-learning-center-faq", "https://learning.cyverse.org/projects/faq/en/latest/"),
("cyverse-240-minute-r-tutorial", "https://learning.cyverse.org/projects/cyverse-240-minute-r-tutorial/en/latest/"),
("cyverse-git-for-mere-mortals", "https://learning.cyverse.org/projects/cyverse-git-for-mere-mortals/en/latest/"),
("cyverse-cyverse-tools-and-services-workshop", "https://learning.cyverse.org/projects/cyverse-cyverse-tools-and-services-workshop/en/latest/"),
("cyverse-visual-interactive-computing-environment", "https://learning.cyverse.org/projects/vice/en/latest/"),
("cyverse-doi-request-quickstart", "https://learning.cyverse.org/projects/cyverse-doi-request-quickstart/en/latest/"),
("cyverse-foundational-open-science-skills-2020", "https://learning.cyverse.org/projects/foss-2020/en/latest/"),
],
'slug': 'cyverse-learning-materials-home',
'name': u'learning-materials-home',
'rtd_language': u'en',
'programming_language': u'words',
'canonical_url': 'https://learning.cyverse.org/en/latest/',
'analytics_code': '',
'single_version': False,
'conf_py_path': '/',
'api_host': 'https://readthedocs.com',
'github_user': 'CyVerse-learning-materials',
'github_repo': 'learning-materials-home',
'github_version': 'master',
'display_github': True,
'bitbucket_user': 'None',
'bitbucket_repo': 'None',
'bitbucket_version': 'master',
'display_bitbucket': False,
'gitlab_user': 'None',
'gitlab_repo': 'None',
'gitlab_version': 'master',
'display_gitlab': False,
'READTHEDOCS': True,
'using_theme': (html_theme == "default"),
'new_theme': (html_theme == "sphinx_rtd_theme"),
'source_suffix': SUFFIX,
'ad_free': False,
'user_analytics_code': '',
'global_analytics_code': 'UA-17997319-2',
'commit': '46e2b39c',
}
if 'html_context' in globals():
html_context.update(context)
else:
html_context = context
# Add custom RTD extension
if 'extensions' in globals():
# Insert at the beginning because it can interfere
# with other extensions.
# See https://github.com/rtfd/readthedocs.org/pull/4054
extensions.insert(0, "readthedocs_ext.readthedocs")
else:
extensions = ["readthedocs_ext.readthedocs"]
# Add External version warning banner to the external version documentation
if 'branch' == 'external':
extensions.insert(1, "readthedocs_ext.external_version_warning")
project_language = 'en'
# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)
# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False
chinese = any([
language_user in ('zh_CN', 'zh_TW'),
project_language in ('zh_CN', 'zh_TW'),
])
japanese = any([
language_user == 'ja',
project_language == 'ja',
])
if chinese:
latex_engine = latex_engine_user or 'xelatex'
latex_elements_rtd = {
'preamble': '\\usepackage[UTF8]{ctex}\n',
}
latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
latex_engine = latex_engine_user or 'platex'
[rtd-command-info] start-time: 2019-10-30T20:31:43.389239Z, end-time: 2019-10-30T20:31:47.947122Z, duration: 4, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.8.5
loading translations [en]... done
making output directory...
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 8 source files that are out of date
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] README
reading sources... [ 25%] contributing
reading sources... [ 37%] index
reading sources... [ 50%] platform_guides
reading sources... [ 62%] quick_starts
reading sources... [ 75%] tools_and_apps
reading sources... [ 87%] tutorials
reading sources... [100%] workshops
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:17: WARNING: Duplicate explicit target name: "tutorials@cyverse.org".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:45: WARNING: Error in "image" directive:
no content permitted.
image:: ./img/cyverse_cmyk.png
:width: 500
:height: 100
CyVerse logo
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:45: WARNING: Substitution definition "CyVerse logo" empty or invalid.
.. |CyVerse logo| image:: ./img/cyverse_cmyk.png
:width: 500
:height: 100
CyVerse logo
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:172: WARNING: Duplicate substitution definition name: "Powered by CyVerse".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:7: WARNING: Undefined substitution referenced: "Github".
cyverse_rst_defined_substitutions.txt:106: WARNING: image file not readable: ./img/cyverse_cymk.png
README.rst:17: WARNING: Duplicate explicit target name: "tutorials@cyverse.org".
README.rst:45: WARNING: Error in "image" directive:
no content permitted.
image:: ./img/cyverse_cmyk.png
:width: 500
:height: 100
CyVerse logo
README.rst:45: WARNING: Substitution definition "CyVerse logo" empty or invalid.
.. |CyVerse logo| image:: ./img/cyverse_cmyk.png
:width: 500
:height: 100
CyVerse logo
README.rst:172: WARNING: Duplicate substitution definition name: "Powered by CyVerse".
README.rst:7: WARNING: Undefined substitution referenced: "Github".
cyverse_rst_defined_substitutions.txt:106: WARNING: image file not readable: ./img/cyverse_cymk.png
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/platform_guides.rst:96: WARNING: Duplicate substitution definition name: "CyVerse logo".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/platform_guides.rst:99: WARNING: Duplicate substitution definition name: "Home_Icon".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/quick_starts.rst:125: WARNING: Duplicate substitution definition name: "Data Store".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/quick_starts.rst:57: WARNING: Undefined substitution referenced: "Github Repo Link".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/tools_and_apps.rst:11: WARNING: Title underline too short.
Tool and App Integration
-----------
cyverse_rst_defined_substitutions.txt:32: WARNING: Document may not end with a transition.
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/tutorials.rst:65: WARNING: Duplicate substitution definition name: "CyVerse logo".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/tutorials.rst:69: WARNING: Duplicate substitution definition name: "Home_Icon".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/workshops.rst:50: WARNING: Duplicate substitution definition name: "CyVerse logo".
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 12%] README
writing output... [ 25%] contributing
writing output... [ 37%] index
writing output... [ 50%] platform_guides
writing output... [ 62%] quick_starts
writing output... [ 75%] tools_and_apps
writing output... [ 87%] tutorials
writing output... [100%] workshops
generating indices... genindex
writing additional pages... search
copying images... [ 50%] ./img/homeicon.png
copying images... [100%] ./img/cyverse_cmyk.png
copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/_static' does not exist
done
copying readthedocs static files... done
copying searchtools... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 22 warnings.
The HTML pages are in _build/html.
[rtd-command-info] start-time: 2019-10-30T20:31:48.072505Z, end-time: 2019-10-30T20:31:49.945121Z, duration: 1, exit-code: 0
python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia
Running Sphinx v1.8.5
loading translations [en]... done
making output directory...
building [mo]: targets for 0 po files that are out of date
building [readthedocssinglehtmllocalmedia]: all documents
updating environment: 8 added, 0 changed, 0 removed
reading sources... [ 12%] README
reading sources... [ 25%] contributing
reading sources... [ 37%] index
reading sources... [ 50%] platform_guides
reading sources... [ 62%] quick_starts
reading sources... [ 75%] tools_and_apps
reading sources... [ 87%] tutorials
reading sources... [100%] workshops
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:17: WARNING: Duplicate explicit target name: "tutorials@cyverse.org".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:45: WARNING: Error in "image" directive:
no content permitted.
image:: ./img/cyverse_cmyk.png
:width: 500
:height: 100
CyVerse logo
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:45: WARNING: Substitution definition "CyVerse logo" empty or invalid.
.. |CyVerse logo| image:: ./img/cyverse_cmyk.png
:width: 500
:height: 100
CyVerse logo
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:172: WARNING: Duplicate substitution definition name: "Powered by CyVerse".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/README.rst:7: WARNING: Undefined substitution referenced: "Github".
cyverse_rst_defined_substitutions.txt:106: WARNING: image file not readable: ./img/cyverse_cymk.png
README.rst:17: WARNING: Duplicate explicit target name: "tutorials@cyverse.org".
README.rst:45: WARNING: Error in "image" directive:
no content permitted.
image:: ./img/cyverse_cmyk.png
:width: 500
:height: 100
CyVerse logo
README.rst:45: WARNING: Substitution definition "CyVerse logo" empty or invalid.
.. |CyVerse logo| image:: ./img/cyverse_cmyk.png
:width: 500
:height: 100
CyVerse logo
README.rst:172: WARNING: Duplicate substitution definition name: "Powered by CyVerse".
README.rst:7: WARNING: Undefined substitution referenced: "Github".
cyverse_rst_defined_substitutions.txt:106: WARNING: image file not readable: ./img/cyverse_cymk.png
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/platform_guides.rst:96: WARNING: Duplicate substitution definition name: "CyVerse logo".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/platform_guides.rst:99: WARNING: Duplicate substitution definition name: "Home_Icon".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/quick_starts.rst:125: WARNING: Duplicate substitution definition name: "Data Store".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/quick_starts.rst:57: WARNING: Undefined substitution referenced: "Github Repo Link".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/tools_and_apps.rst:11: WARNING: Title underline too short.
Tool and App Integration
-----------
cyverse_rst_defined_substitutions.txt:32: WARNING: Document may not end with a transition.
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/tutorials.rst:65: WARNING: Duplicate substitution definition name: "CyVerse logo".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/tutorials.rst:69: WARNING: Duplicate substitution definition name: "Home_Icon".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/workshops.rst:50: WARNING: Duplicate substitution definition name: "CyVerse logo".
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
assembling single document... README platform_guides tools_and_apps quick_starts tutorials workshops contributing
writing... done
writing additional files...
copying images... [ 50%] ./img/homeicon.png
copying images... [100%] ./img/cyverse_cmyk.png
copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-learning-materials-home/checkouts/latest/_static' does not exist
done
copying readthedocs static files... done
copying extra files... done
dumping object inventory... done
build succeeded, 22 warnings.
The HTML page is in _build/localmedia.