Read the Docs build information Build id: 253969 Project: cyverse-data-store-quickstart Version: latest Commit: e7db17861ec28676f9669de03c2749a64419c8c3 Date: 2019-10-28T17:55:14.159196Z State: finished Success: True [rtd-command-info] start-time: 2019-10-28T18:02:15.758697Z, end-time: 2019-10-28T18:02:16.503779Z, duration: 0, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/CyVerse-learning-materials/Data-store-quickstart.git . Cloning into '.'... [rtd-command-info] start-time: 2019-10-28T18:02:16.756934Z, end-time: 2019-10-28T18:02:16.803476Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at e7db178 initial import [rtd-command-info] start-time: 2019-10-28T18:02:16.884587Z, end-time: 2019-10-28T18:02:16.909566Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-10-28T18:02:18.270260Z, end-time: 2019-10-28T18:02:21.539657Z, duration: 3, exit-code: 0 python3.7 -mvirtualenv --no-site-packages --no-download Using base prefix '/home/docs/.pyenv/versions/3.7.1' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2019-10-28T18:02:21.629979Z, end-time: 2019-10-28T18:02:24.481287Z, duration: 2, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/.cache/pip pip Collecting pip Downloading https://files.pythonhosted.org/packages/00/b6/9cfa56b4081ad13874b0c6f96af8ce16cfbc1cb06bedf8e9164ce5551ec1/pip-19.3.1-py2.py3-none-any.whl (1.4MB) Installing collected packages: pip Found existing installation: pip 18.1 Uninstalling pip-18.1: Successfully uninstalled pip-18.1 Successfully installed pip-19.3.1 [rtd-command-info] start-time: 2019-10-28T18:02:24.566316Z, end-time: 2019-10-28T18:02:38.127686Z, duration: 13, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 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/home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/.cache/pip/wheels/7e/72/92/744b532c779242b57aab4bcba80c312b30c069bbd60025e7e6 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.1-cp37-none-any.whl size=490417 sha256=6580902f41ceb7db732d92f80692f96cb1d09992bd8500ec37d54af13cf7d5c9 Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/.cache/pip/wheels/74/bc/50/ae030267a192919b289f84661cfeb5573cf383841c543e8696 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, imagesize, sphinxcontrib-websupport, chardet, idna, certifi, urllib3, requests, MarkupSafe, Jinja2, pytz, babel, six, pyparsing, packaging, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Found existing installation: setuptools 40.6.3 Uninstalling setuptools-40.6.3: Successfully uninstalled setuptools-40.6.3 Successfully installed Jinja2-2.10.3 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.7.0 certifi-2019.9.11 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.1 idna-2.8 imagesize-1.1.0 mock-1.0.1 packaging-19.2 pillow-5.4.1 pyparsing-2.4.2 pytz-2019.3 readthedocs-sphinx-ext-1.0.0 recommonmark-0.5.0 requests-2.22.0 setuptools-41.0.1 six-1.12.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 urllib3-1.25.6 [rtd-command-info] start-time: 2019-10-28T18:02:38.725696Z, end-time: 2019-10-28T18:02:39.042019Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # General information about the project. import sys import os sys.path.insert(0, os.path.dirname(__file__)) from misc.cyverse_sphinx_conf import * # noqa project = 'YOUR QUICKSTART NAME HERE as topic_quick_start' copyright = '2018, CyVerse' author = 'Your Name' version = '1.0' release = '1.0' epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://media.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://media.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//readthedocs.com/projects/cyverse-data-store-quickstart/downloads/pdf/latest/"), ("html", "//readthedocs.com/projects/cyverse-data-store-quickstart/downloads/htmlzip/latest/"), ("epub", "//readthedocs.com/projects/cyverse-data-store-quickstart/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'cyverse-data-store-quickstart', 'name': u'Data-store-quickstart', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://cyverse-data-store-quickstart.readthedocs-hosted.com/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/', 'api_host': 'https://readthedocs.com', 'github_user': 'CyVerse-learning-materials', 'github_repo': 'Data-store-quickstart', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': 'e7db1786', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2019-10-28T18:02:39.124421Z, end-time: 2019-10-28T18:02:40.898402Z, duration: 1, exit-code: 0 python sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 7 source files that are out of date updating environment: 7 added, 0 changed, 0 removed reading sources... 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[100%] step2 /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/envs/latest/lib/python3.7/site-packages/recommonmark/parser.py:65: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/index.rst:9: WARNING: Title underline too short. **Data Store Quickstart** =================== looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/Contributors_maintainers.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/License.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/README.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/slides/README.md: WARNING: document isn't included in any toctree done preparing documents... done writing output... 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[rtd-command-info] start-time: 2019-10-28T18:02:41.016599Z, end-time: 2019-10-28T18:02:42.681522Z, duration: 1, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 7 added, 0 changed, 0 removed reading sources... [ 14%] Contributors_maintainers reading sources... [ 28%] License reading sources... [ 42%] README reading sources... [ 57%] example_directives_delete reading sources... [ 71%] index reading sources... [ 85%] slides/README reading sources... [100%] step2 /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/envs/latest/lib/python3.7/site-packages/recommonmark/parser.py:65: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/index.rst:9: WARNING: Title underline too short. **Data Store Quickstart** =================== looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/Contributors_maintainers.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/License.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/README.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/slides/README.md: WARNING: document isn't included in any toctree done preparing documents... done assembling single document... step2 example_directives_delete writing... done writing additional files... copying images... [ 25%] ./img/cyverse_rgb.png copying images... [ 50%] ./img/homeicon.png copying images... [ 75%] ./img/kitten_no_border.png copying images... [100%] ./img/kitten_w_border.png copying static files... WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/_static' does not exist done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded, 6 warnings. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2019-10-28T18:02:42.798066Z, end-time: 2019-10-28T18:02:44.291459Z, duration: 1, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 7 added, 0 changed, 0 removed reading sources... 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[3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [4] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [5] [6 <./kitten_no_b order.png (PNG copy)>] [7 <./kitten_w_border.png (PNG copy)>] [8] Chapter 2. Overfull \hbox (2.90338pt too wide) in paragraph at lines 457--457 []\T1/phv/m/n/10 Link| Underfull \hbox (badness 10000) in paragraph at lines 457--457 []\T1/ptm/m/n/10 (See Live [9] [10] Chapter 3. (./cyverse-data-store-quickstart.ind) [11] (./cyverse-data-store-quickstart.aux ) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on cyverse-data-store-quickstart.pdf (15 pages, 653573 bytes). Transcript written on cyverse-data-store-quickstart.log. Latexmk: Index file 'cyverse-data-store-quickstart.idx' was written Latexmk: Log file says output to 'cyverse-data-store-quickstart.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'cyverse-data-store-quickstart.out' 'cyverse-data-store-quickstart.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="cyverse-data-store-quickstart" "CyVerseDocumentation.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./CyVerseDocumentation.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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[3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [4] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [5] [6 <./kitten_no_b order.png (PNG copy)>] [7 <./kitten_w_border.png (PNG copy)>] [8] Chapter 2. Overfull \hbox (2.90338pt too wide) in paragraph at lines 457--457 []\T1/phv/m/n/10 Link| Underfull \hbox (badness 10000) in paragraph at lines 457--457 []\T1/ptm/m/n/10 (See Live [9] [10] Chapter 3. (./cyverse-data-store-quickstart.ind) [11] (./cyverse-data-store-quickstart.aux ) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on cyverse-data-store-quickstart.pdf (15 pages, 653573 bytes). Transcript written on cyverse-data-store-quickstart.log. Latexmk: Index file 'cyverse-data-store-quickstart.idx' was written Latexmk: Log file says output to 'cyverse-data-store-quickstart.pdf' Latexmk: All targets (cyverse-data-store-quickstart.pdf) are up-to-date [rtd-command-info] start-time: 2019-10-28T18:02:48.959131Z, end-time: 2019-10-28T18:02:49.276900Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/checkouts/latest/./_build/latex/cyverse-data-store-quickstart.pdf /home/docs/checkouts/readthedocs.org/user_builds/cyverse-data-store-quickstart/artifacts/latest/sphinx_pdf/cyverse-data-store-quickstart.pdf [rtd-command-info] start-time: 2019-10-28T18:02:49.351921Z, end-time: 2019-10-28T18:02:51.020558Z, duration: 1, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [epub]: targets for 7 source files that are out of date updating environment: 7 added, 0 changed, 0 removed reading sources... 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