Read the Docs build information Build id: 2536388 Project: tiledb-inc-tiledb-py Version: 2002 Commit: dd67a3b12b7d266673bbd2aaf9716be3794fe9c0 Date: 2024-10-09T13:20:12.817006Z State: finished Success: False [rtd-command-info] start-time: 2024-10-09T13:20:14.236171Z, end-time: 2024-10-09T13:20:14.758944Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2024-10-09T13:20:14.878082Z, end-time: 2024-10-09T13:20:15.885536Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/2002/head:external-2002 From https://github.com/TileDB-Inc/TileDB-Py * [new ref] refs/pull/2002/head -> external-2002 * [new tag] 0.30.0 -> 0.30.0 * [new tag] 0.30.1 -> 0.30.1 * [new tag] 0.30.2 -> 0.30.2 * [new tag] 0.31.0 -> 0.31.0 * [new tag] 0.31.1 -> 0.31.1 * [new tag] 0.32.0 -> 0.32.0 * [new tag] 0.32.1 -> 0.32.1 * [new tag] 0.32.2 -> 0.32.2 [rtd-command-info] start-time: 2024-10-09T13:20:16.041536Z, end-time: 2024-10-09T13:20:16.122378Z, duration: 0, exit-code: 0 git checkout --force dd67a3b12b7d266673bbd2aaf9716be3794fe9c0 Note: switching to 'dd67a3b12b7d266673bbd2aaf9716be3794fe9c0'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at dd67a3b Merge branch 'dev' into agis/sc-25572/add-datetime64-days-support-pyarrow [rtd-command-info] start-time: 2024-10-09T13:20:16.219703Z, end-time: 2024-10-09T13:20:16.283829Z, duration: 0, exit-code: 0 cat .readthedocs.yml # Don't build any extra formats formats: [] # Use RTD config version 2 # https://docs.readthedocs.io/en/stable/config-file/v2.html version: 2 # Set build OS to avoid build failures with old compiler build: os: "ubuntu-22.04" tools: python: "3.12" sphinx: configuration: doc/source/conf.py python: install: - method: pip path: . extra_requirements: - doc [rtd-command-info] start-time: 2024-10-09T13:20:22.663963Z, end-time: 2024-10-09T13:20:22.746682Z, duration: 0, exit-code: 0 asdf global python 3.12.3 [rtd-command-info] start-time: 2024-10-09T13:20:23.196898Z, end-time: 2024-10-09T13:20:24.415774Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.12.3.final.0-64 in 855ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2024-10-09T13:20:24.513153Z, end-time: 2024-10-09T13:20:37.082491Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (23.1) Collecting pip Downloading pip-24.2-py3-none-any.whl (1.8 MB) 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sphinx-8.0.2-py3-none-any.whl.metadata (6.2 kB) Collecting sphinxcontrib-applehelp (from sphinx) Downloading sphinxcontrib_applehelp-2.0.0-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-devhelp (from sphinx) Downloading sphinxcontrib_devhelp-2.0.0-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-jsmath (from sphinx) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx) Downloading sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-serializinghtml>=1.1.9 (from sphinx) Downloading sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl.metadata (2.4 kB) Collecting sphinxcontrib-qthelp (from sphinx) Downloading sphinxcontrib_qthelp-2.0.0-py3-none-any.whl.metadata (2.3 kB) Collecting Jinja2>=3.1 (from sphinx) Downloading jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) Collecting Pygments>=2.17 (from sphinx) Downloading pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB) Collecting docutils<0.22,>=0.20 (from sphinx) Downloading docutils-0.21.2-py3-none-any.whl.metadata (2.8 kB) Collecting snowballstemmer>=2.2 (from sphinx) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB) Collecting babel>=2.13 (from sphinx) Downloading babel-2.16.0-py3-none-any.whl.metadata (1.5 kB) Collecting alabaster>=0.7.14 (from sphinx) Downloading alabaster-1.0.0-py3-none-any.whl.metadata (2.8 kB) Collecting imagesize>=1.3 (from sphinx) Downloading imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB) Collecting requests>=2.30.0 (from sphinx) Downloading requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) Collecting packaging>=23.0 (from sphinx) Downloading packaging-24.1-py3-none-any.whl.metadata (3.2 kB) Collecting MarkupSafe>=2.0 (from Jinja2>=3.1->sphinx) Downloading MarkupSafe-3.0.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) Collecting charset-normalizer<4,>=2 (from 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Downloading jinja2-3.1.4-py3-none-any.whl (133 kB) Downloading packaging-24.1-py3-none-any.whl (53 kB) Downloading pygments-2.18.0-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 344.0 MB/s eta 0:00:00 Downloading requests-2.32.3-py3-none-any.whl (64 kB) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) Downloading sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB) Downloading sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB) Downloading sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB) Downloading sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Downloading sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB) Downloading certifi-2024.8.30-py3-none-any.whl (167 kB) Downloading charset_normalizer-3.4.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB) Downloading idna-3.10-py3-none-any.whl (70 kB) Downloading MarkupSafe-3.0.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) Downloading urllib3-2.2.3-py3-none-any.whl (126 kB) Installing collected packages: snowballstemmer, urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, sphinx Successfully installed Jinja2-3.1.4 MarkupSafe-3.0.1 Pygments-2.18.0 alabaster-1.0.0 babel-2.16.0 certifi-2024.8.30 charset-normalizer-3.4.0 docutils-0.21.2 idna-3.10 imagesize-1.4.1 packaging-24.1 requests-2.32.3 snowballstemmer-2.2.0 sphinx-8.0.2 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.2.3 [rtd-command-info] start-time: 2024-10-09T13:20:46.784167Z, end-time: 2024-10-09T13:21:21.102567Z, duration: 34, exit-code: 1 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir .[doc] Processing /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2002 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting numpy>=1.25 (from tiledb==0.32.3.dev15+gdd67a3b) Downloading numpy-2.1.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from 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sphinx-rtd-theme==2.0.0->tiledb==0.32.3.dev15+gdd67a3b) Downloading docutils-0.20.1-py3-none-any.whl.metadata (2.8 kB) Collecting sphinxcontrib-jquery<5,>=4 (from sphinx-rtd-theme==2.0.0->tiledb==0.32.3.dev15+gdd67a3b) Downloading sphinxcontrib_jquery-4.1-py2.py3-none-any.whl.metadata (2.6 kB) Requirement already satisfied: sphinxcontrib-applehelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (2.0.0) Requirement already satisfied: sphinxcontrib-devhelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (2.0.0) Requirement already satisfied: sphinxcontrib-jsmath in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (1.0.1) Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (2.1.0) Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (2.0.0) Requirement already satisfied: sphinxcontrib-qthelp in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (2.0.0) INFO: pip is looking at multiple versions of sphinx to determine which version is compatible with other requirements. This could take a while. Collecting Sphinx (from tiledb==0.32.3.dev15+gdd67a3b) Downloading sphinx-7.4.6-py3-none-any.whl.metadata (6.1 kB) Downloading sphinx-7.4.5-py3-none-any.whl.metadata (6.1 kB) Downloading sphinx-7.4.4-py3-none-any.whl.metadata (6.1 kB) Downloading sphinx-7.4.3-py3-none-any.whl.metadata (6.1 kB) Downloading sphinx-7.4.2-py3-none-any.whl.metadata (6.1 kB) Downloading sphinx-7.4.1-py3-none-any.whl.metadata (6.1 kB) Downloading sphinx-7.4.0-py3-none-any.whl.metadata (6.1 kB) INFO: pip is still looking at multiple versions of sphinx to determine which version is compatible with other requirements. This could take a while. Downloading sphinx-7.3.7-py3-none-any.whl.metadata (6.0 kB) Requirement already satisfied: Pygments>=2.14 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (2.18.0) Requirement already satisfied: snowballstemmer>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (2.2.0) Requirement already satisfied: babel>=2.9 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (2.16.0) Collecting alabaster~=0.7.14 (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) Downloading alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB) Requirement already satisfied: imagesize>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (1.4.1) Requirement already satisfied: requests>=2.25.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (2.32.3) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from requests>=2.25.0->Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (3.4.0) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from requests>=2.25.0->Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (3.10) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from requests>=2.25.0->Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (2.2.3) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/lib/python3.12/site-packages (from requests>=2.25.0->Sphinx->tiledb==0.32.3.dev15+gdd67a3b) (2024.8.30) Downloading Jinja2-3.0.0-py3-none-any.whl (133 kB) Downloading sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl (2.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 146.8 MB/s eta 0:00:00 Downloading numpy-2.1.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.0/16.0 MB 219.5 MB/s eta 0:00:00 Downloading sphinx-7.3.7-py3-none-any.whl (3.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.3/3.3 MB 252.1 MB/s eta 0:00:00 Downloading breathe-4.35.0-py3-none-any.whl (92 kB) Downloading alabaster-0.7.16-py3-none-any.whl (13 kB) Downloading docutils-0.20.1-py3-none-any.whl (572 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 572.7/572.7 kB 495.2 MB/s eta 0:00:00 Downloading sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB) Building wheels for collected packages: tiledb Building wheel for tiledb (pyproject.toml): started Building wheel for tiledb (pyproject.toml): finished with status 'error' error: subprocess-exited-with-error × Building wheel for tiledb (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [51 lines of output] /tmp/pip-build-env-ln3l7q3v/normal/lib/python3.12/site-packages/setuptools_scm/git.py:167: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2002" is shallow and may cause errors warnings.warn(f'"{wd.path}" is shallow and may cause errors') *** scikit-build-core 0.10.7 using CMake 3.30.4 (wheel) *** Configuring CMake... loading initial cache file /tmp/tmpomc_0fhz/build/CMakeInit.txt -- The C compiler identification is GNU 11.4.0 -- The CXX compiler identification is GNU 11.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/2002/bin/python (found version "3.12.3") found components: Interpreter Development.Module NumPy -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /tmp/pip-build-env-ln3l7q3v/overlay/lib/python3.12/site-packages/pybind11/include (found version "2.13.6") -- Downloading TileDB default version ... -- [download 100% complete] -- Using libtiledb path: /tmp/tmpomc_0fhz/build/_deps/tiledb-src/lib/cmake/TileDB -- Adding "libtiledb" into install group -- Configuring done (2.5s) -- Generating done (0.0s) -- Build files have been written to: /tmp/tmpomc_0fhz/build *** Building project with Ninja... [1/34] Building CXX object tiledb/CMakeFiles/main.dir/main.cc.o [2/34] Building CXX object tiledb/CMakeFiles/main.dir/npbuffer.cc.o [3/34] Building CXX object tiledb/CMakeFiles/main.dir/core.cc.o FAILED: tiledb/CMakeFiles/main.dir/core.cc.o /usr/bin/g++ -Dmain_EXPORTS -isystem /home/docs/.asdf/installs/python/3.12.3/include/python3.12 -isystem /tmp/pip-build-env-ln3l7q3v/overlay/lib/python3.12/site-packages/pybind11/include -isystem /tmp/tmpomc_0fhz/build/_deps/tiledb-src/include -O3 -DNDEBUG -std=gnu++20 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT tiledb/CMakeFiles/main.dir/core.cc.o -MF tiledb/CMakeFiles/main.dir/core.cc.o.d -o tiledb/CMakeFiles/main.dir/core.cc.o -c /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2002/tiledb/core.cc In file included from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2002/tiledb/py_arrowio:94, from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2002/tiledb/core.cc:26: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2002/tiledb/py_arrow_io_impl.h: In member function ‘void tiledb::arrow::ArrowExporter::export_(const string&, ArrowArray*, ArrowSchema*, tiledb::arrow::ArrowAdapter::release_cb, void*)’: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2002/tiledb/py_arrow_io_impl.h:800:1: error: version control conflict marker in file 800 | <<<<<<< Updated upstream | ^~~~~~~ /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2002/tiledb/py_arrow_io_impl.h:803:1: error: version control conflict marker in file 803 | ======= | ^~~~~~~ /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/2002/tiledb/py_arrow_io_impl.h:806:1: error: version control conflict marker in file 806 | >>>>>>> Stashed changes | ^~~~~~~ [4/34] Building CXX object tiledb/CMakeFiles/main.dir/fragment.cc.o [5/34] Building CXX object tiledb/CMakeFiles/main.dir/schema_evolution.cc.o ninja: build stopped: subcommand failed. *** CMake build failed [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for tiledb Failed to build tiledb ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (tiledb)