Read the Docs build information Build id: 2450870 Project: icb-anndata Version: 1626 Commit: 466655f7e8d034bf764fde91033cd16538640070 Date: 2024-08-30T12:09:52.663506Z State: cancelled Success: False [rtd-command-info] start-time: 2024-08-30T12:09:54.409839Z, end-time: 2024-08-30T12:09:55.008322Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/scverse/anndata.git . Cloning into '.'... [rtd-command-info] start-time: 2024-08-30T12:09:55.080140Z, end-time: 2024-08-30T12:09:55.648103Z, duration: 0, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/1626/head:external-1626 From https://github.com/scverse/anndata * [new ref] refs/pull/1626/head -> external-1626 [rtd-command-info] start-time: 2024-08-30T12:09:55.804582Z, end-time: 2024-08-30T12:09:55.874786Z, duration: 0, exit-code: 0 git checkout --force 466655f7e8d034bf764fde91033cd16538640070 Note: switching to '466655f7e8d034bf764fde91033cd16538640070'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 466655f CLI types [rtd-command-info] start-time: 2024-08-30T12:09:55.946627Z, end-time: 2024-08-30T12:09:56.020385Z, duration: 0, exit-code: 0 cat .readthedocs.yml version: 2 build: os: ubuntu-20.04 tools: python: "3.12" jobs: post_checkout: # unshallow so version can be derived from tag - git fetch --unshallow || true pre_build: # run towncrier to preview the next version’s release notes - ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && towncrier build --keep || true sphinx: configuration: docs/conf.py fail_on_warning: true # do not change or you will be fired python: install: - method: pip path: . extra_requirements: - doc submodules: include: - "docs/tutorials/notebooks" recursive: true [rtd-command-info] start-time: 2024-08-30T12:09:56.180299Z, end-time: 2024-08-30T12:09:56.304909Z, duration: 0, exit-code: 0 git submodule sync [rtd-command-info] start-time: 2024-08-30T12:09:56.373860Z, end-time: 2024-08-30T12:09:57.053009Z, duration: 0, exit-code: 0 git submodule update --init --force --recursive -- docs/tutorials/notebooks Submodule 'docs/tutorials/notebooks' (https://github.com/scverse/anndata-tutorials) registered for path 'docs/tutorials/notebooks' Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/1626/docs/tutorials/notebooks'... Submodule path 'docs/tutorials/notebooks': checked out '9e186c5c694793bb04ea1397721d154d6e0b7069' [rtd-command-info] start-time: 2024-08-30T12:09:57.121343Z, end-time: 2024-08-30T12:09:59.025867Z, duration: 1, exit-code: 0 git fetch --unshallow || true From https://github.com/scverse/anndata * [new tag] 0.10.0 -> 0.10.0 * [new tag] 0.10.0.dev0 -> 0.10.0.dev0 * [new tag] 0.10.0rc1 -> 0.10.0rc1 * [new tag] 0.11.0.dev0 -> 0.11.0.dev0 * [new tag] 0.3 -> 0.3 * [new tag] 0.3.0.1 -> 0.3.0.1 * [new tag] 0.3.0.3 -> 0.3.0.3 * [new tag] 0.3.1 -> 0.3.1 * [new tag] 0.3.2 -> 0.3.2 * [new tag] 0.3.3 -> 0.3.3 * [new tag] 0.3.4 -> 0.3.4 * [new tag] 0.4.1 -> 0.4.1 * [new tag] 0.4.2 -> 0.4.2 * [new tag] 0.4.3 -> 0.4.3 * [new tag] 0.4.4 -> 0.4.4 * [new tag] 0.5 -> 0.5 * [new tag] 0.5.1 -> 0.5.1 * [new tag] 0.5.10 -> 0.5.10 * [new tag] 0.5.2 -> 0.5.2 * [new tag] 0.5.3 -> 0.5.3 * [new tag] 0.5.4 -> 0.5.4 * [new tag] 0.5.5 -> 0.5.5 * [new tag] 0.5.6 -> 0.5.6 * [new tag] 0.5.7 -> 0.5.7 * [new tag] 0.5.8 -> 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snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) Downloading sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB) Downloading sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB) Downloading sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB) Downloading sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Downloading sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB) Downloading certifi-2024.8.30-py3-none-any.whl (167 kB) Downloading charset_normalizer-3.3.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (141 kB) Downloading idna-3.8-py3-none-any.whl (66 kB) Downloading MarkupSafe-2.1.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (28 kB) Downloading urllib3-2.2.2-py3-none-any.whl (121 kB) Installing collected packages: snowballstemmer, urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, sphinx, readthedocs-sphinx-ext Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 Pygments-2.18.0 alabaster-1.0.0 babel-2.16.0 certifi-2024.8.30 charset-normalizer-3.3.2 docutils-0.21.2 idna-3.8 imagesize-1.4.1 packaging-24.1 readthedocs-sphinx-ext-2.2.5 requests-2.32.3 snowballstemmer-2.2.0 sphinx-8.0.2 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.2.2 [rtd-command-info] start-time: 2024-08-30T12:10:38.947627Z, end-time: 2024-08-30T12:11:23.173386Z, duration: 44, exit-code: 0 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir .[doc] Processing /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/1626 Installing build dependencies: started Installing 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kB) Downloading wcwidth-0.2.13-py2.py3-none-any.whl (34 kB) Downloading attrs-24.2.0-py3-none-any.whl (63 kB) Downloading jsonschema_specifications-2023.12.1-py3-none-any.whl (18 kB) Downloading jupyter_client-8.6.2-py3-none-any.whl (105 kB) Downloading referencing-0.35.1-py3-none-any.whl (26 kB) Downloading rpds_py-0.20.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (357 kB) Downloading more_itertools-10.4.0-py3-none-any.whl (60 kB) Downloading pyzmq-26.2.0-cp312-cp312-manylinux_2_28_x86_64.whl (860 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 860.6/860.6 kB 482.8 MB/s eta 0:00:00 Downloading tornado-6.4.1-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (436 kB) Building wheels for collected packages: anndata, asciitree Building wheel for anndata (pyproject.toml): started Building wheel for anndata (pyproject.toml): finished with status 'done' Created wheel for anndata: filename=anndata-0.11.0.dev199+g466655f-py3-none-any.whl size=138163 sha256=c0a737f9084f1370c71c2f5f7271e9969e188d6050a32a8bf9d88c7a20df9e7a Stored in directory: /tmp/pip-ephem-wheel-cache-fd0r1kob/wheels/87/1b/8c/c134ee8f4062690d593621a4afdb4d424ef51a5c373c157ccc Building wheel for asciitree (setup.py): started Building wheel for asciitree (setup.py): finished with status 'done' Created wheel for asciitree: filename=asciitree-0.3.3-py3-none-any.whl size=5033 sha256=7dc37e5cd80a7173029bd418b589dc6b8b06e067e2c3ada5f76fb01effd9273a Stored in directory: /tmp/pip-ephem-wheel-cache-fd0r1kob/wheels/a5/d7/98/f56ae733748cd0fa577172bda0e73e0b1f1793c98e09b9e458 Successfully built anndata asciitree Installing collected packages: webencodings, wcwidth, pytz, pure-eval, ptyprocess, fastjsonschema, asciitree, array-api-compat, tzdata, typing-extensions, traitlets, tornado, tinycss2, tabulate, soupsieve, six, ruamel.yaml.clib, rpds-py, readthedocs-sphinx-search, pyzmq, pyyaml, prompt-toolkit, platformdirs, pexpect, parso, pandocfilters, numpy, natsort, msgpack, more-itertools, mistune, mdurl, jupyterlab-pygments, fsspec, filelock, fasteners, executing, defusedxml, decorator, click, attrs, accessible-pygments, towncrier, sphinx-jinja2-compat, scipy, ruamel.yaml, referencing, python-dateutil, numcodecs, matplotlib-inline, markdown-it-py, jupyter-core, jedi, html5lib, h5py, domdf-python-tools, cssutils, cachecontrol, bleach, beautifulsoup4, awkward-cpp, asttokens, zarr, stack-data, sphinxext-opengraph, sphinx-tabs, sphinx-prompt, sphinx-issues, sphinx-design, sphinx-copybutton, sphinx-autodoc-typehints, scanpydoc, pydata-sphinx-theme, pandas, mdit-py-plugins, jupyter-client, jsonschema-specifications, dict2css, awkward, autodocsumm, apeye-core, sphinx-book-theme, myst-parser, jsonschema, ipython, apeye, anndata, sphinx-toolbox, nbformat, nbclient, nbconvert, nbsphinx Successfully installed accessible-pygments-0.0.5 anndata-0.11.0.dev199+g466655f apeye-1.4.1 apeye-core-1.1.5 array-api-compat-1.8 asciitree-0.3.3 asttokens-2.4.1 attrs-24.2.0 autodocsumm-0.2.13 awkward-2.6.7 awkward-cpp-37 beautifulsoup4-4.12.3 bleach-6.1.0 cachecontrol-0.14.0 click-8.1.7 cssutils-2.11.1 decorator-5.1.1 defusedxml-0.7.1 dict2css-0.3.0.post1 domdf-python-tools-3.9.0 executing-2.0.1 fasteners-0.19 fastjsonschema-2.20.0 filelock-3.15.4 fsspec-2024.6.1 h5py-3.11.0 html5lib-1.1 ipython-8.27.0 jedi-0.19.1 jsonschema-4.23.0 jsonschema-specifications-2023.12.1 jupyter-client-8.6.2 jupyter-core-5.7.2 jupyterlab-pygments-0.3.0 markdown-it-py-3.0.0 matplotlib-inline-0.1.7 mdit-py-plugins-0.4.1 mdurl-0.1.2 mistune-3.0.2 more-itertools-10.4.0 msgpack-1.0.8 myst-parser-4.0.0 natsort-8.4.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.5 numcodecs-0.13.0 numpy-2.1.0 pandas-2.2.2 pandocfilters-1.5.1 parso-0.8.4 pexpect-4.9.0 platformdirs-4.2.2 prompt-toolkit-3.0.47 ptyprocess-0.7.0 pure-eval-0.2.3 pydata-sphinx-theme-0.15.4 python-dateutil-2.9.0.post0 pytz-2024.1 pyyaml-6.0.2 pyzmq-26.2.0 readthedocs-sphinx-search-0.3.2 referencing-0.35.1 rpds-py-0.20.0 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 scanpydoc-0.13.6 scipy-1.14.1 six-1.16.0 soupsieve-2.6 sphinx-autodoc-typehints-2.3.0 sphinx-book-theme-1.1.3 sphinx-copybutton-0.5.2 sphinx-design-0.6.1 sphinx-issues-4.1.0 sphinx-jinja2-compat-0.3.0 sphinx-prompt-1.9.0 sphinx-tabs-3.4.5 sphinx-toolbox-3.8.0 sphinxext-opengraph-0.9.1 stack-data-0.6.3 tabulate-0.9.0 tinycss2-1.3.0 tornado-6.4.1 towncrier-24.8.0 traitlets-5.14.3 typing-extensions-4.12.2 tzdata-2024.1 wcwidth-0.2.13 webencodings-0.5.1 zarr-2.18.2