Read the Docs build information Build id: 244388 Project: iiasa-energy-program-message-ix Version: latest Commit: 1a74e6cb900f66a3a311b7b144fa875fe3227d2c Date: 2019-09-24T14:22:00.938952Z State: finished Success: True [rtd-command-info] start-time: 2019-09-24T14:22:26.822417Z, end-time: 2019-09-24T14:22:26.830652Z, duration: 0, exit-code: 0 git remote set-url origin https://github.com/iiasa/message_ix.git [rtd-command-info] start-time: 2019-09-24T14:22:26.926770Z, end-time: 2019-09-24T14:22:27.288122Z, duration: 0, exit-code: 0 git fetch origin --tags --prune --prune-tags --depth 50 From https://github.com/iiasa/message_ix - [deleted] (none) -> origin/issue/233 a14493b..1a74e6c master -> origin/master [rtd-command-info] start-time: 2019-09-24T14:22:27.568424Z, end-time: 2019-09-24T14:22:28.366047Z, duration: 0, exit-code: 0 git checkout --force origin/master Previous HEAD position was a14493b Update contributor guidelines (#230) HEAD is now at 1a74e6c Use bleeding-edge pyam in RTD build (#234) [rtd-command-info] start-time: 2019-09-24T14:22:28.485343Z, end-time: 2019-09-24T14:22:28.494228Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-09-24T14:22:29.541171Z, end-time: 2019-09-24T14:22:34.539523Z, duration: 4, exit-code: 0 python3.6 -mvirtualenv --no-site-packages --no-download Using base prefix '/home/docs/.pyenv/versions/3.6.8' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin/python3.6 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2019-09-24T14:22:34.631214Z, end-time: 2019-09-24T14:22:37.321417Z, duration: 2, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/.cache/pip pip Collecting pip Using cached https://files.pythonhosted.org/packages/30/db/9e38760b32e3e7f40cce46dd5fb107b8c73840df38f0046d8e6514e675a1/pip-19.2.3-py2.py3-none-any.whl Installing collected packages: pip Found existing installation: pip 19.1.1 Uninstalling pip-19.1.1: Successfully uninstalled pip-19.1.1 Successfully installed pip-19.2.3 [rtd-command-info] start-time: 2019-09-24T14:22:37.406667Z, end-time: 2019-09-24T14:22:47.264647Z, duration: 9, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 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cached https://files.pythonhosted.org/packages/87/76/46d697698a143e05f77bec5a526bf4e56a0be61d63425b68f4ba553b51f2/pytz-2019.2-py2.py3-none-any.whl Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx<2) Using cached https://files.pythonhosted.org/packages/b2/5f/23e0023be6bb885d00ffbefad2942bc51a620328ee910f64abe5a8d18dd1/MarkupSafe-1.1.1-cp36-cp36m-manylinux1_x86_64.whl Collecting pyparsing>=2.0.2 (from packaging->sphinx<2) Using cached https://files.pythonhosted.org/packages/11/fa/0160cd525c62d7abd076a070ff02b2b94de589f1a9789774f17d7c54058e/pyparsing-2.4.2-py2.py3-none-any.whl Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx<2) Using cached https://files.pythonhosted.org/packages/18/b0/8146a4f8dd402f60744fa380bc73ca47303cccf8b9190fd16a827281eac2/certifi-2019.9.11-py2.py3-none-any.whl Collecting idna<2.9,>=2.5 (from requests>=2.0.0->sphinx<2) Using cached 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/home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/.cache/pip/wheels/ae/9b/66/6b8f275ec6dfa2138a56faaf2b4314ca44a4746286560d5578 Successfully built snowballstemmer Installing collected packages: Pygments, docutils, mock, pillow, alabaster, future, commonmark, six, sphinxcontrib-websupport, pytz, babel, imagesize, snowballstemmer, MarkupSafe, Jinja2, pyparsing, packaging, certifi, idna, chardet, urllib3, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Successfully installed Jinja2-2.10.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.7.0 certifi-2019.9.11 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.17.1 idna-2.8 imagesize-1.1.0 mock-1.0.1 packaging-19.2 pillow-5.4.1 pyparsing-2.4.2 pytz-2019.2 readthedocs-sphinx-ext-1.0.0 recommonmark-0.5.0 requests-2.22.0 six-1.12.0 snowballstemmer-1.9.1 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 urllib3-1.25.5 [rtd-command-info] start-time: 2019-09-24T14:22:47.345196Z, end-time: 2019-09-24T14:23:24.182266Z, duration: 36, exit-code: 0 python -m pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/.cache/pip -r doc/requirements.txt Obtaining ixmp from git+git://github.com/iiasa/ixmp.git#egg=ixmp (from -r doc/requirements.txt (line 1)) Cloning git://github.com/iiasa/ixmp.git to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/src/ixmp Running command git clone -q git://github.com/iiasa/ixmp.git /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/src/ixmp Collecting jupyter (from -r doc/requirements.txt (line 2)) Using cached https://files.pythonhosted.org/packages/83/df/0f5dd132200728a86190397e1ea87cd76244e42d39ec5e88efd25b2abd7e/jupyter-1.0.0-py2.py3-none-any.whl Collecting nbformat (from -r doc/requirements.txt (line 3)) Using cached 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Installing collected packages: JPype1, click, numpy, toolz, dask, graphviz, python-dateutil, pandas, pint, PyYAML, xarray, xlsxwriter, xlrd, ixmp, ipython-genutils, decorator, traitlets, tornado, pyzmq, jupyter-core, jupyter-client, pickleshare, parso, jedi, wcwidth, prompt-toolkit, ptyprocess, pexpect, backcall, ipython, ipykernel, qtconsole, entrypoints, testpath, pandocfilters, defusedxml, attrs, pyrsistent, jsonschema, nbformat, mistune, webencodings, bleach, nbconvert, jupyter-console, Send2Trash, prometheus-client, terminado, notebook, widgetsnbextension, ipywidgets, jupyter, numpydoc, argparse, cycler, kiwisolver, matplotlib, scipy, seaborn, pyam-iamc, py, atomicwrites, more-itertools, zipp, importlib-metadata, pluggy, pytest, oset, latexcodec, pybtex, pybtex-docutils, sphinxcontrib-bibtex Running setup.py develop for ixmp Running setup.py develop for pyam-iamc Successfully installed JPype1-0.7.0 PyYAML-5.1.2 Send2Trash-1.5.0 argparse-1.4.0 atomicwrites-1.3.0 attrs-19.1.0 backcall-0.1.0 bleach-3.1.0 click-7.0 cycler-0.10.0 dask-2.4.0 decorator-4.4.0 defusedxml-0.6.0 entrypoints-0.3 graphviz-0.13 importlib-metadata-0.23 ipykernel-5.1.2 ipython-7.8.0 ipython-genutils-0.2.0 ipywidgets-7.5.1 ixmp jedi-0.15.1 jsonschema-3.0.2 jupyter-1.0.0 jupyter-client-5.3.3 jupyter-console-6.0.0 jupyter-core-4.5.0 kiwisolver-1.1.0 latexcodec-1.0.7 matplotlib-3.1.1 mistune-0.8.4 more-itertools-7.2.0 nbconvert-5.6.0 nbformat-4.4.0 notebook-6.0.1 numpy-1.17.2 numpydoc-0.9.1 oset-0.1.3 pandas-0.25.1 pandocfilters-1.4.2 parso-0.5.1 pexpect-4.7.0 pickleshare-0.7.5 pint-0.9 pluggy-0.13.0 prometheus-client-0.7.1 prompt-toolkit-2.0.9 ptyprocess-0.6.0 py-1.8.0 pyam-iamc pybtex-0.22.2 pybtex-docutils-0.2.1 pyrsistent-0.15.4 pytest-5.1.3 python-dateutil-2.8.0 pyzmq-18.1.0 qtconsole-4.5.5 scipy-1.3.1 seaborn-0.9.0 sphinxcontrib-bibtex-1.0.0 terminado-0.8.2 testpath-0.4.2 toolz-0.10.0 tornado-6.0.3 traitlets-4.3.2 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.5.1 xarray-0.11.3 xlrd-1.2.0 xlsxwriter-1.2.1 zipp-0.6.0 [rtd-command-info] start-time: 2019-09-24T14:23:24.264793Z, end-time: 2019-09-24T14:23:25.244155Z, duration: 0, exit-code: 0 python /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/checkouts/latest/setup.py install --force running install running bdist_egg running egg_info creating message_ix.egg-info writing message_ix.egg-info/PKG-INFO writing dependency_links to message_ix.egg-info/dependency_links.txt writing entry points to message_ix.egg-info/entry_points.txt writing requirements to message_ix.egg-info/requires.txt writing top-level names to message_ix.egg-info/top_level.txt writing manifest file 'message_ix.egg-info/SOURCES.txt' reading manifest file 'message_ix.egg-info/SOURCES.txt' writing manifest file 'message_ix.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/message_ix copying message_ix/__init__.py -> build/lib/message_ix copying message_ix/cli.py -> build/lib/message_ix copying message_ix/testing.py -> build/lib/message_ix copying message_ix/postprocess.py -> build/lib/message_ix copying message_ix/default_path_constants.py -> build/lib/message_ix copying message_ix/core.py -> build/lib/message_ix copying message_ix/macro.py -> build/lib/message_ix copying message_ix/utils.py -> build/lib/message_ix copying message_ix/default_paths.py -> build/lib/message_ix creating build/lib/message_ix/reporting copying message_ix/reporting/__init__.py -> build/lib/message_ix/reporting copying message_ix/reporting/pyam.py -> build/lib/message_ix/reporting copying message_ix/reporting/computations.py -> build/lib/message_ix/reporting creating build/lib/message_ix/tools copying message_ix/tools/__init__.py -> build/lib/message_ix/tools creating build/lib/message_ix/tools/add_year copying message_ix/tools/add_year/__init__.py -> build/lib/message_ix/tools/add_year copying message_ix/tools/add_year/__main__.py -> build/lib/message_ix/tools/add_year creating build/lib/message_ix/model copying message_ix/model/MACRO_run.gms -> build/lib/message_ix/model copying message_ix/model/version.gms -> build/lib/message_ix/model copying message_ix/model/conopt.opt -> build/lib/message_ix/model copying message_ix/model/MESSAGE-MACRO_run.gms -> build/lib/message_ix/model copying message_ix/model/MESSAGE_run.gms -> build/lib/message_ix/model creating build/lib/message_ix/model/output copying message_ix/model/output/README.md -> build/lib/message_ix/model/output creating build/lib/message_ix/model/templates copying message_ix/model/templates/MESSAGE_master_template.gms -> build/lib/message_ix/model/templates creating build/lib/message_ix/model/MACRO copying message_ix/model/MACRO/macro_solve.gms -> build/lib/message_ix/model/MACRO copying message_ix/model/MACRO/macro_data_load.gms -> build/lib/message_ix/model/MACRO copying message_ix/model/MACRO/macro_reporting.gms -> build/lib/message_ix/model/MACRO copying message_ix/model/MACRO/macro_calibration.gms -> build/lib/message_ix/model/MACRO copying message_ix/model/MACRO/macro_core.gms -> build/lib/message_ix/model/MACRO creating build/lib/message_ix/model/data copying message_ix/model/data/README.md -> build/lib/message_ix/model/data creating build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/data_load.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/parameter_def.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/reporting_for_MACRO.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/scaling_investment_costs.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/sets_maps_def.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/model_setup.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/auxiliary_settings.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/model_solve.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/reporting.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/version_check.gms -> build/lib/message_ix/model/MESSAGE copying message_ix/model/MESSAGE/model_core.gms -> build/lib/message_ix/model/MESSAGE creating build/lib/message_ix/model/includes copying message_ix/model/includes/aux_computation_time.gms -> build/lib/message_ix/model/includes copying message_ix/model/includes/period_parameter_assignment.gms -> build/lib/message_ix/model/includes creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/message_ix copying build/lib/message_ix/__init__.py -> build/bdist.linux-x86_64/egg/message_ix copying build/lib/message_ix/cli.py -> build/bdist.linux-x86_64/egg/message_ix creating build/bdist.linux-x86_64/egg/message_ix/reporting copying build/lib/message_ix/reporting/__init__.py -> build/bdist.linux-x86_64/egg/message_ix/reporting copying build/lib/message_ix/reporting/pyam.py -> build/bdist.linux-x86_64/egg/message_ix/reporting copying build/lib/message_ix/reporting/computations.py -> build/bdist.linux-x86_64/egg/message_ix/reporting copying build/lib/message_ix/testing.py -> build/bdist.linux-x86_64/egg/message_ix creating build/bdist.linux-x86_64/egg/message_ix/model copying build/lib/message_ix/model/MACRO_run.gms -> build/bdist.linux-x86_64/egg/message_ix/model copying build/lib/message_ix/model/version.gms -> build/bdist.linux-x86_64/egg/message_ix/model copying build/lib/message_ix/model/conopt.opt -> build/bdist.linux-x86_64/egg/message_ix/model copying build/lib/message_ix/model/MESSAGE-MACRO_run.gms -> build/bdist.linux-x86_64/egg/message_ix/model creating build/bdist.linux-x86_64/egg/message_ix/model/output copying build/lib/message_ix/model/output/README.md -> build/bdist.linux-x86_64/egg/message_ix/model/output creating build/bdist.linux-x86_64/egg/message_ix/model/templates copying build/lib/message_ix/model/templates/MESSAGE_master_template.gms -> build/bdist.linux-x86_64/egg/message_ix/model/templates copying build/lib/message_ix/model/MESSAGE_run.gms -> build/bdist.linux-x86_64/egg/message_ix/model creating build/bdist.linux-x86_64/egg/message_ix/model/MACRO copying build/lib/message_ix/model/MACRO/macro_solve.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MACRO copying build/lib/message_ix/model/MACRO/macro_data_load.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MACRO copying build/lib/message_ix/model/MACRO/macro_reporting.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MACRO copying build/lib/message_ix/model/MACRO/macro_calibration.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MACRO copying build/lib/message_ix/model/MACRO/macro_core.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MACRO creating build/bdist.linux-x86_64/egg/message_ix/model/data copying build/lib/message_ix/model/data/README.md -> build/bdist.linux-x86_64/egg/message_ix/model/data creating build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/data_load.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/parameter_def.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/reporting_for_MACRO.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/scaling_investment_costs.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/sets_maps_def.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/model_setup.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/auxiliary_settings.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/model_solve.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/reporting.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/version_check.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE copying build/lib/message_ix/model/MESSAGE/model_core.gms -> build/bdist.linux-x86_64/egg/message_ix/model/MESSAGE creating build/bdist.linux-x86_64/egg/message_ix/model/includes copying build/lib/message_ix/model/includes/aux_computation_time.gms -> build/bdist.linux-x86_64/egg/message_ix/model/includes copying build/lib/message_ix/model/includes/period_parameter_assignment.gms -> build/bdist.linux-x86_64/egg/message_ix/model/includes copying build/lib/message_ix/postprocess.py -> build/bdist.linux-x86_64/egg/message_ix copying build/lib/message_ix/default_path_constants.py -> build/bdist.linux-x86_64/egg/message_ix copying build/lib/message_ix/core.py -> build/bdist.linux-x86_64/egg/message_ix copying build/lib/message_ix/macro.py -> build/bdist.linux-x86_64/egg/message_ix copying build/lib/message_ix/utils.py -> build/bdist.linux-x86_64/egg/message_ix copying build/lib/message_ix/default_paths.py -> build/bdist.linux-x86_64/egg/message_ix creating build/bdist.linux-x86_64/egg/message_ix/tools copying build/lib/message_ix/tools/__init__.py -> build/bdist.linux-x86_64/egg/message_ix/tools creating build/bdist.linux-x86_64/egg/message_ix/tools/add_year copying build/lib/message_ix/tools/add_year/__init__.py -> build/bdist.linux-x86_64/egg/message_ix/tools/add_year copying build/lib/message_ix/tools/add_year/__main__.py -> build/bdist.linux-x86_64/egg/message_ix/tools/add_year byte-compiling build/bdist.linux-x86_64/egg/message_ix/__init__.py to __init__.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/cli.py to cli.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/reporting/__init__.py to __init__.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/reporting/pyam.py to pyam.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/reporting/computations.py to computations.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/testing.py to testing.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/postprocess.py to postprocess.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/default_path_constants.py to default_path_constants.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/core.py to core.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/macro.py to macro.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/utils.py to utils.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/default_paths.py to default_paths.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/tools/__init__.py to __init__.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/tools/add_year/__init__.py to __init__.cpython-36.pyc byte-compiling build/bdist.linux-x86_64/egg/message_ix/tools/add_year/__main__.py to __main__.cpython-36.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/entry_points.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying message_ix.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... message_ix.__pycache__.__init__.cpython-36: module references __file__ message_ix.__pycache__.default_path_constants.cpython-36: module references __file__ creating dist creating 'dist/message_ix-1.2.0-py3.6.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing message_ix-1.2.0-py3.6.egg creating /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages/message_ix-1.2.0-py3.6.egg Extracting message_ix-1.2.0-py3.6.egg to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Adding message-ix 1.2.0 to easy-install.pth file Installing messageix-config script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Installing messageix-dl script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages/message_ix-1.2.0-py3.6.egg Processing dependencies for message-ix==1.2.0 Searching for XlsxWriter==1.2.1 Best match: XlsxWriter 1.2.1 Adding XlsxWriter 1.2.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for xlrd==1.2.0 Best match: xlrd 1.2.0 Adding xlrd 1.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for pandas==0.25.1 Best match: pandas 0.25.1 Adding pandas 0.25.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for ixmp==0.2.0.post0.dev13 Best match: ixmp 0.2.0.post0.dev13 ixmp 0.2.0.post0.dev13 is already the active version in easy-install.pth Installing import-timeseries script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Installing ixmp script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Installing ixmp-config script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/src/ixmp Searching for python-dateutil==2.8.0 Best match: python-dateutil 2.8.0 Adding python-dateutil 2.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for numpy==1.17.2 Best match: numpy 1.17.2 Adding numpy 1.17.2 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Installing f2py3.6 script to /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for pytz==2019.2 Best match: pytz 2019.2 Adding pytz 2019.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for xarray==0.11.3 Best match: xarray 0.11.3 Adding xarray 0.11.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for PyYAML==5.1.2 Best match: PyYAML 5.1.2 Adding PyYAML 5.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for Pint==0.9 Best match: Pint 0.9 Adding Pint 0.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for graphviz==0.13 Best match: graphviz 0.13 Adding graphviz 0.13 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for dask==2.4.0 Best match: dask 2.4.0 Adding dask 2.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for Click==7.0 Best match: Click 7.0 Adding Click 7.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for JPype1==0.7.0 Best match: JPype1 0.7.0 Adding JPype1 0.7.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for six==1.12.0 Best match: six 1.12.0 Adding six 1.12.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Searching for toolz==0.10.0 Best match: toolz 0.10.0 Adding toolz 0.10.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/iiasa-energy-program-message-ix/envs/latest/lib/python3.6/site-packages Finished processing dependencies for message-ix==1.2.0 [rtd-command-info] start-time: 2019-09-24T14:23:26.598113Z, end-time: 2019-09-24T14:23:26.911231Z, duration: 0, exit-code: 0 cat doc/source/conf.py # -*- coding: utf-8 -*- # # message documentation build configuration file, created by # sphinx-quickstart on Mon Feb 8 16:15:24 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. import sys import os try: from pathlib import Path except ImportError: pass import message_ix # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. #needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. sys.path.append('.') extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', 'sphinx.ext.todo', 'sphinx.ext.coverage', 'sphinx.ext.mathjax', 'sphinxcontrib.bibtex', 'sphinx.ext.autosummary', 'sphinx.ext.napoleon', ] # Extension only works for Python 3 if sys.version_info[0] == 3: sys.path.insert(0, os.path.abspath('..')) extensions.append('grab_gams_doc') # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'MESSAGEix' copyright = u'2018, IIASA, Energy Program' author = u'IIASA, Energy Program' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. # version = as determined from function above # The full version, including alpha/beta/rc tags. version = message_ix.__version__ release = message_ix.__version__ # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: #today = '' # Else, today_fmt is used as the format for a strftime call. #today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. exclude_patterns = ['_themes/*'] # The reST default role (used for this markup: `text`) to use for all # documents. #default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. #add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). #add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. #show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. #modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. #keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. #html_theme_path = [] # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". #html_title = None # A shorter title for the navigation bar. Default is the same as html_title. #html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. html_logo = '_static/logo_white.png' # The name of an image file (within the static path) to use as favicon of the # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. #html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] def setup(app): app.add_stylesheet('custom.css') # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. #html_extra_path = [] # If not '', a 'Last updated on:' timestamp is inserted at every page bottom, # using the given strftime format. #html_last_updated_fmt = '%b %d, %Y' # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. #html_use_smartypants = True # Custom sidebar templates, maps document names to template names. #html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. #html_additional_pages = {} # If false, no module index is generated. #html_domain_indices = True # If false, no index is generated. #html_use_index = True # If true, the index is split into individual pages for each letter. #html_split_index = False # If true, links to the reST sources are added to the pages. #html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. #html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. #html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. #html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). #html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr' #html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # Now only 'ja' uses this config value #html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. #html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'MESSAGEix_doc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). #'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). #'pointsize': '10pt', # Additional stuff for the LaTeX preamble. #'preamble': '', # Latex figure (float) alignment #'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'message.tex', u'message Documentation', u'IIASA Energy Program', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. #latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. #latex_use_parts = False # If true, show page references after internal links. #latex_show_pagerefs = False # If true, show URL addresses after external links. #latex_show_urls = False # Documents to append as an appendix to all manuals. #latex_appendices = [] # If false, no module index is generated. #latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'message', u'message Documentation', [author], 1) ] # If true, show URL addresses after external links. #man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'message', u'message Documentation', author, 'message', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. #texinfo_appendices = [] # If false, no module index is generated. #texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. #texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. #texinfo_no_detailmenu = False intersphinx_mapping = { 'dask': ('http://docs.dask.org/en/stable/', None), 'python': ('https://docs.python.org/3/', None), 'pandas': ('https://pandas.pydata.org/pandas-docs/stable/', None), 'pyam': ('https://pyam-iamc.readthedocs.io/en/stable/', None) } # prolog for all rst files rst_prolog = """ .. |MESSAGEix| replace:: MESSAGE\ :emphasis:`ix` .. |ixmp| replace:: :emphasis:`ix modeling platform` .. |version| replace:: {} .. role:: strike .. role:: underline """.format(version) # Configuration for grab_gams_doc extension if sys.version_info[0] == 3: gams_source_dir = Path(__file__).parents[2] / 'message_ix' / 'model' gams_target_dir = 'model' ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://media.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://media.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("v1.2.0", "/en/v1.2.0/"), ("1.2.x", "/en/1.2.x/"), ("v1.1.0", "/en/v1.1.0/"), ("master", "/en/master/"), ("issue-233", "/en/issue-233/"), ], 'downloads': [ ("pdf", "//readthedocs.com/projects/iiasa-energy-program-message-ix/downloads/pdf/latest/"), ("html", "//readthedocs.com/projects/iiasa-energy-program-message-ix/downloads/htmlzip/latest/"), ("epub", "//readthedocs.com/projects/iiasa-energy-program-message-ix/downloads/epub/latest/"), ], 'subprojects': [ ("iiasa-energy-program-message-transport", "https://message.iiasa.ac.at/projects/transport/en/latest/"), ("iiasa-energy-program-ixmp", "https://message.iiasa.ac.at/projects/ixmp/en/stable/"), ("iiasa-energy-program-message-doc", "https://message.iiasa.ac.at/projects/global/en/latest/"), ], 'slug': 'iiasa-energy-program-message-ix', 'name': u'message_ix', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://message.iiasa.ac.at/en/stable/', 'analytics_code': 'UA-134631150-1', 'single_version': False, 'conf_py_path': '/doc/source/', 'api_host': 'https://readthedocs.com', 'github_user': 'iiasa', 'github_repo': 'message_ix', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': 'UA-134631150-1', 'global_analytics_code': 'UA-17997319-2', 'commit': '1a74e6cb', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2019-09-24T14:23:26.993274Z, end-time: 2019-09-24T14:23:43.932565Z, duration: 16, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... generating GAMS sources... [ 4%] MACRO_run generating GAMS sources... [ 8%] version generating GAMS sources... [ 13%] MESSAGE-MACRO_run generating GAMS sources... [ 17%] MESSAGE_run generating GAMS sources... [ 21%] templates/MESSAGE_master_template generating GAMS sources... [ 26%] MACRO/macro_solve generating GAMS sources... [ 30%] MACRO/macro_data_load generating GAMS sources... [ 34%] MACRO/macro_reporting generating GAMS sources... [ 39%] MACRO/macro_calibration generating GAMS sources... [ 43%] MACRO/macro_core generating GAMS sources... [ 47%] MESSAGE/data_load generating GAMS sources... [ 52%] MESSAGE/parameter_def generating GAMS sources... [ 56%] MESSAGE/reporting_for_MACRO generating GAMS sources... [ 60%] MESSAGE/scaling_investment_costs generating GAMS sources... [ 65%] MESSAGE/sets_maps_def generating GAMS sources... [ 69%] MESSAGE/model_setup generating GAMS sources... [ 73%] MESSAGE/auxiliary_settings generating GAMS sources... [ 78%] MESSAGE/model_solve generating GAMS sources... [ 82%] MESSAGE/reporting generating GAMS sources... [ 86%] MESSAGE/version_check generating GAMS sources... [ 91%] MESSAGE/model_core generating GAMS sources... [ 95%] includes/aux_computation_time generating GAMS sources... [100%] includes/period_parameter_assignment loading intersphinx inventory from http://docs.dask.org/en/stable/objects.inv... loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://pandas.pydata.org/pandas-docs/stable/objects.inv... loading intersphinx inventory from https://pyam-iamc.readthedocs.io/en/stable/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 26 source files that are out of date updating environment: 26 added, 0 changed, 0 removed reading sources... [ 3%] api reading sources... [ 7%] api/ixmp reading sources... [ 11%] api/message_ix reading sources... 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[100%] _static/ix_features.png copying static files... done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in _build/html. [rtd-command-info] start-time: 2019-09-24T14:23:44.081049Z, end-time: 2019-09-24T14:23:54.406165Z, duration: 10, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... generating GAMS sources... [ 4%] MACRO_run generating GAMS sources... [ 8%] version generating GAMS sources... [ 13%] MESSAGE-MACRO_run generating GAMS sources... [ 17%] MESSAGE_run generating GAMS sources... [ 21%] templates/MESSAGE_master_template generating GAMS sources... [ 26%] MACRO/macro_solve generating GAMS sources... 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[ 50%] _static/ix_features.png copying images... [100%] _static/ix_components.png copying static files... done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded, 1 warning. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2019-09-24T14:23:54.553412Z, end-time: 2019-09-24T14:24:04.848062Z, duration: 10, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... generating GAMS sources... [ 4%] MACRO_run generating GAMS sources... [ 8%] version generating GAMS sources... [ 13%] MESSAGE-MACRO_run generating GAMS sources... [ 17%] MESSAGE_run generating GAMS sources... [ 21%] templates/MESSAGE_master_template generating GAMS sources... [ 26%] MACRO/macro_solve generating GAMS sources... [ 30%] MACRO/macro_data_load generating GAMS sources... 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[ 50%] _static/ix_features.png copying images... [100%] _static/ix_components.png copying TeX support files... done build succeeded, 1 warning. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2019-09-24T14:24:06.038720Z, end-time: 2019-09-24T14:24:06.362749Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2019-09-24T14:24:06.442064Z, end-time: 2019-09-24T14:24:12.718178Z, duration: 6, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=iiasa-energy-program-message-ix -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="iiasa-energy-program-message-ix" "message.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on iiasa-energy-program-message-ix.pdf (97 pages, 957114 bytes). Transcript written on iiasa-energy-program-message-ix.log. Latexmk: Index file 'iiasa-energy-program-message-ix.idx' was written Latexmk: Missing input file: 'iiasa-energy-program-message-ix.ind' from line 'No file iiasa-energy-program-message-ix.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'iiasa-energy-program-message-ix.pdf' Latexmk: Log file says output to 'iiasa-energy-program-message-ix.pdf' Latexmk: List of undefined refs and citations: Citation `bibliography:huppmann-messageix-2018' on page 1 undefined on input line 86 Citation `bibliography:huppmann-messageix-2018' on page 3 undefined on input line 103 Citation `bibliography:huppmann-messageix-2018' on page 9 undefined on input line 407 Citation `bibliography:johnson-vre-2016' on page 9 undefined on input line 439 Citation `bibliography:keppo-short-2010' on page 35 undefined on input line 3698 Citation `bibliography:keppo-short-2010' on page 51 undefined on input line 5037 Citation `bibliography:keppo-short-2010' on page 52 undefined on input line 5062 Citation `bibliography:keppo-short-2010' on page 9 undefined on input line 443 Citation `bibliography:manne-buying-1992' on page 61 undefined on input line 5717 Citation `bibliography:manne-buying-1992' on page 62 undefined on input line 5792 Citation `bibliography:messner-users-1995' on page 3 undefined on input line 104 Citation `bibliography:sullivan-vre-2013' on page 33 undefined on input line 3376 Citation `bibliography:sullivan-vre-2013' on page 46 undefined on input line 4758 Citation `bibliography:sullivan-vre-2013' on page 47 undefined on input line 4835 Citation `bibliography:sullivan-vre-2013' on page 9 undefined on input line 438 Reference `api/ixmp:module-ixmp' on page 93 undefined on input line 8213 Reference `api/ixmp:module-ixmp.config' on page 93 undefined on input line 8214 Reference `api/ixmp:module-ixmp.model_settings' on page 93 undefined on input line 8215 Reference `api/ixmp:module-ixmp.testing' on page 93 undefined on input line 8218 Reference `api/message_ix:module-message_ix' on page 93 undefined on input line 8221 Reference `api/message_ix:module-message_ix.testing' on page 93 undefined on input line 8224 Reference `api/message_ix:module-message_ix.utils' on page 93 undefined on input line 8226 Reference `reporting:module-ixmp.reporting.computations' on page 93 undefined on input line 8216 Reference `reporting:module-ixmp.reporting.utils' on page 93 undefined on input line 8217 Reference `reporting:module-message_ix.reporting.computations' on page 93 undefined on input line 8222 Reference `reporting:module-message_ix.reporting.pyam' on page 93 undefined on input line 8223 Reference `tools/add_year:module-message_ix.tools.add_year' on page 93 undefined on input line 8225 Latexmk: Summary of warnings: Latex failed to resolve 12 reference(s) Latex failed to resolve 16 citation(s) Rule 'makeindex iiasa-energy-program-message-ix.idx': File changes, etc: Non-existent destination files: 'iiasa-energy-program-message-ix.ind' ------------ Run number 1 of rule 'makeindex iiasa-energy-program-message-ix.idx' ------------ ------------ Running 'makeindex -s python.ist -o "iiasa-energy-program-message-ix.ind" "iiasa-energy-program-message-ix.idx"' ------------ Latexmk: applying rule 'makeindex iiasa-energy-program-message-ix.idx'... 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on iiasa-energy-program-message-ix.pdf (101 pages, 984204 bytes) . Transcript written on iiasa-energy-program-message-ix.log. Latexmk: Index file 'iiasa-energy-program-message-ix.idx' was written Latexmk: References changed. 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firstmodelyear\T1/ptm/m/n/10 , \T1/pcr /m/n/10 lastmodelyear\T1/ptm/m/n/10 , \T1/pcr/m/n/10 baseyear_macro\T1/ptm/m/n/ 10 , and Underfull \hbox (badness 10000) in paragraph at lines 7305--7305 []\T1/ptm/m/it/10 sc_ref\T1/ptm/m/n/10 , \T1/ptm/m/it/10 sc_new\T1/ptm/m/n/10 , \T1/ptm/m/it/10 years_new\T1/ptm/m/n/10 , \T1/ptm/m/it/10 firstyear_new=None\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7305--7305 \T1/ptm/m/it/10 lastyear_new=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 macro=False\T 1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7305--7305 \T1/ptm/m/it/10 rewrite=True\T1/ptm/m/n/10 , \T1/ptm/m/it/10 unit_check=True\T1 /ptm/m/n/10 , \T1/ptm/m/it/10 ex-trapol_neg=None\T1/ptm/m/n/10 , [76] Underfull \hbox (badness 10000) in paragraph at lines 7369--7369 \T1/ptm/m/it/10 firstyear_new\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-trap-o-late=Fa lse\T1/ptm/m/n/10 , \T1/ptm/m/it/10 rewrite=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7369--7369 \T1/ptm/m/it/10 unit_check=True\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-trapol_neg=N one\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7397--7397 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 yrs_new\T1/ptm/m/n/10 , \T 1/ptm/m/it/10 hori-zon\T1/ptm/m/n/10 , \T1/ptm/m/it/10 year_col\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7397--7397 \T1/ptm/m/it/10 value_col='value'\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex-trap-o-lat e=False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ex- [77] Underfull \hbox (badness 10000) in paragraph at lines 7438--7438 []\T1/ptm/m/it/10 df\T1/ptm/m/n/10 , \T1/ptm/m/it/10 yrs_new\T1/ptm/m/n/10 , \T 1/ptm/m/it/10 hori-zon\T1/ptm/m/n/10 , \T1/ptm/m/it/10 year_ref\T1/ptm/m/n/10 , \T1/ptm/m/it/10 year_col\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7464--7465 []\T1/pcr/b/n/10 tec_list \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 list of str\T1/ptm/m/ n/10 ) ^^U List of tech-nolo-gies in the pa-ram-e-ter 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[81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] (./iiasa-energy-program-message-ix.ind [94] Underfull \hbox (badness 10000) in paragraph at lines 19--20 []\T1/pcr/m/n/10 add_spatial_sets() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes-sage_ix .Scenario Underfull \hbox (badness 10000) in paragraph at lines 23--24 []\T1/pcr/m/n/10 add_year_par() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes- Underfull \hbox (badness 10000) in paragraph at lines 24--25 []\T1/pcr/m/n/10 add_year_set() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes- Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/pcr/m/n/10 aggregate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/pcr/m/n/10 collapse_message_cols() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod -ule mes- Underfull \hbox (badness 10000) in paragraph at lines 56--57 []\T1/pcr/m/n/10 data_for_quantity() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 58--59 []\T1/pcr/m/n/10 DEFAULT_SOLVE_OPTIONS \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes-sage _ix.core at- Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/pcr/m/n/10 disaggregate_shares() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 76--77 []\T1/pcr/m/n/10 from_scenario() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ixmp.reporting .Reporter class [95] Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/pcr/m/n/10 from_scenario() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes-sage_ix.re porting.Reporter Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/pcr/m/n/10 interpolate_1d() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule me s- Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/pcr/m/n/10 interpolate_2d() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule me s- Underfull \hbox (badness 10000) in paragraph at lines 125--126 []\T1/pcr/m/n/10 keys_for_quantity() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 130--131 []\T1/pcr/m/n/10 load_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 137--139 []\T1/pcr/m/n/10 make_dataframe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 177--178 []\T1/pcr/m/n/10 register_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule [96] Underfull \hbox (badness 10000) in paragraph at lines 219--220 []\T1/pcr/m/n/10 unit_uniform() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes- Underfull \hbox (badness 10000) in paragraph at lines 227--229 []\T1/pcr/m/n/10 vintage_and_active_years() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mes - Underfull \hbox (badness 10000) in paragraph at lines 235--236 []\T1/pcr/m/n/10 write_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 236--238 []\T1/pcr/m/n/10 write_report() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule mes- [97]) (./iiasa-energy-program-message-ix.aux) LaTeX Warning: There were undefined references. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on iiasa-energy-program-message-ix.pdf (101 pages, 984313 bytes) . 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