Read the Docs build information Build id: 2435523 Project: icb-anndata Version: 1605 Commit: dad4418069e089b0c0e84d9544b7e080169602be Date: 2024-08-23T08:06:48.354168Z State: cancelled Success: False [rtd-command-info] start-time: 2024-08-23T08:06:49.707537Z, end-time: 2024-08-23T08:06:50.233487Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/scverse/anndata.git . Cloning into '.'... [rtd-command-info] start-time: 2024-08-23T08:06:50.303422Z, end-time: 2024-08-23T08:06:50.824221Z, duration: 0, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/1605/head:external-1605 From https://github.com/scverse/anndata * [new ref] refs/pull/1605/head -> external-1605 [rtd-command-info] start-time: 2024-08-23T08:06:50.962632Z, end-time: 2024-08-23T08:06:51.049490Z, duration: 0, exit-code: 0 git checkout --force dad4418069e089b0c0e84d9544b7e080169602be Note: switching to 'dad4418069e089b0c0e84d9544b7e080169602be'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at dad4418 constraints [rtd-command-info] start-time: 2024-08-23T08:06:51.139092Z, end-time: 2024-08-23T08:06:51.199135Z, duration: 0, exit-code: 0 cat .readthedocs.yml version: 2 build: os: ubuntu-20.04 tools: python: "3.12" sphinx: configuration: docs/conf.py fail_on_warning: true # do not change or you will be fired python: install: - method: pip path: . extra_requirements: - doc submodules: include: - "docs/tutorials/notebooks" recursive: true [rtd-command-info] start-time: 2024-08-23T08:06:51.332081Z, end-time: 2024-08-23T08:06:51.414940Z, duration: 0, exit-code: 0 git submodule sync [rtd-command-info] start-time: 2024-08-23T08:06:51.490700Z, end-time: 2024-08-23T08:06:52.125780Z, duration: 0, exit-code: 0 git submodule update --init --force --recursive -- docs/tutorials/notebooks Submodule 'docs/tutorials/notebooks' (https://github.com/scverse/anndata-tutorials) registered for path 'docs/tutorials/notebooks' Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/1605/docs/tutorials/notebooks'... Submodule path 'docs/tutorials/notebooks': checked out '9e186c5c694793bb04ea1397721d154d6e0b7069' [rtd-command-info] start-time: 2024-08-23T08:06:58.952563Z, end-time: 2024-08-23T08:06:59.035797Z, duration: 0, exit-code: 0 asdf global python 3.12.3 [rtd-command-info] start-time: 2024-08-23T08:06:59.467525Z, end-time: 2024-08-23T08:07:00.645743Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.12.3.final.0-64 in 781ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1605, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2024-08-23T08:07:00.718181Z, end-time: 2024-08-23T08:07:20.469164Z, duration: 19, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1605/lib/python3.12/site-packages (23.1) Collecting pip Downloading pip-24.2-py3-none-any.whl (1.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 35.0 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1605/lib/python3.12/site-packages (67.6.1) Collecting setuptools Downloading setuptools-73.0.1-py3-none-any.whl (2.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.3/2.3 MB 151.3 MB/s eta 0:00:00 Installing collected packages: setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 67.6.1 Uninstalling setuptools-67.6.1: Successfully uninstalled setuptools-67.6.1 Attempting uninstall: pip Found existing 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requests, Jinja2, sphinx, readthedocs-sphinx-ext Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 Pygments-2.18.0 alabaster-1.0.0 babel-2.16.0 certifi-2024.7.4 charset-normalizer-3.3.2 docutils-0.21.2 idna-3.7 imagesize-1.4.1 packaging-24.1 readthedocs-sphinx-ext-2.2.5 requests-2.32.3 snowballstemmer-2.2.0 sphinx-8.0.2 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.2.2