Read the Docs build information Build id: 237102 Project: cyverse-doi-request-quickstart Version: latest Commit: 733f6cd6e2bac73178749cceb106cfbb98757779 Date: 2019-08-29T00:58:25.160906Z State: finished Success: True [rtd-command-info] start-time: 2019-08-29T00:58:25.984387Z, end-time: 2019-08-29T00:58:27.923966Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/CyVerse-learning-materials/DOI_request_quickstart.git . Cloning into '.'... [rtd-command-info] start-time: 2019-08-29T00:58:28.146541Z, end-time: 2019-08-29T00:58:28.182446Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 733f6cd include pages for additional information [rtd-command-info] start-time: 2019-08-29T00:58:28.259166Z, end-time: 2019-08-29T00:58:28.267759Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-08-29T00:58:29.238166Z, end-time: 2019-08-29T00:58:32.206810Z, duration: 2, exit-code: 0 python2.7 -mvirtualenv --no-site-packages --no-download New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/latest/bin/python2.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2019-08-29T00:58:32.286236Z, end-time: 2019-08-29T00:58:34.398295Z, duration: 2, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/.cache/pip pip DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. Collecting pip Downloading https://files.pythonhosted.org/packages/30/db/9e38760b32e3e7f40cce46dd5fb107b8c73840df38f0046d8e6514e675a1/pip-19.2.3-py2.py3-none-any.whl (1.4MB) Installing collected packages: pip Found existing installation: pip 19.1.1 Uninstalling pip-19.1.1: Successfully uninstalled pip-19.1.1 Successfully installed pip-19.2.3 [rtd-command-info] start-time: 2019-08-29T00:58:34.472249Z, end-time: 2019-08-29T00:58:45.176741Z, duration: 10, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support Collecting Pygments==2.3.1 Downloading https://files.pythonhosted.org/packages/13/e5/6d710c9cf96c31ac82657bcfb441df328b22df8564d58d0c4cd62612674c/Pygments-2.3.1-py2.py3-none-any.whl (849kB) Requirement already up-to-date: setuptools==41.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/latest/lib/python2.7/site-packages (41.0.1) Collecting docutils==0.14 Downloading https://files.pythonhosted.org/packages/50/09/c53398e0005b11f7ffb27b7aa720c617aba53be4fb4f4f3f06b9b5c60f28/docutils-0.14-py2-none-any.whl (543kB) Collecting mock==1.0.1 Downloading https://files.pythonhosted.org/packages/a2/52/7edcd94f0afb721a2d559a5b9aae8af4f8f2c79bc63fdbe8a8a6c9b23bbe/mock-1.0.1.tar.gz (818kB) Collecting pillow==5.4.1 Downloading https://files.pythonhosted.org/packages/0d/f3/421598450cb9503f4565d936860763b5af413a61009d87a5ab1e34139672/Pillow-5.4.1-cp27-cp27mu-manylinux1_x86_64.whl (2.0MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading https://files.pythonhosted.org/packages/10/ad/00b090d23a222943eb0eda509720a404f531a439e803f6538f35136cae9e/alabaster-0.7.12-py2.py3-none-any.whl Collecting commonmark==0.8.1 Downloading https://files.pythonhosted.org/packages/ab/ca/439c88039583a29564a0043186875258e9a4f041fb5c422cd387b8e10175/commonmark-0.8.1-py2.py3-none-any.whl (47kB) Collecting recommonmark==0.5.0 Downloading https://files.pythonhosted.org/packages/9b/3d/92ea48401622510e57b4bdaa74dc9db2fb9e9e892324b48f9c02d716a93a/recommonmark-0.5.0-py2.py3-none-any.whl Collecting sphinx<2 Downloading https://files.pythonhosted.org/packages/7d/66/a4af242b4348b729b9d46ce5db23943ce9bca7da9bbe2ece60dc27f26420/Sphinx-1.8.5-py2.py3-none-any.whl (3.1MB) Collecting sphinx-rtd-theme<0.5 Downloading https://files.pythonhosted.org/packages/60/b4/4df37087a1d36755e3a3bfd2a30263f358d2dea21938240fa02313d45f51/sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4MB) Collecting readthedocs-sphinx-ext<1.1 Downloading https://files.pythonhosted.org/packages/51/43/a5a98d9aec325b2824bdf504fa446ae876d0909d03e28667018f9eb01bcd/readthedocs_sphinx_ext-1.0.0-py2.py3-none-any.whl Collecting future (from commonmark==0.8.1) Downloading https://files.pythonhosted.org/packages/90/52/e20466b85000a181e1e144fd8305caf2cf475e2f9674e797b222f8105f5f/future-0.17.1.tar.gz (829kB) Collecting snowballstemmer>=1.1 (from sphinx<2) Downloading https://files.pythonhosted.org/packages/a0/5e/d9ead2d57d39b3e1c1868ce84212319e5543a19c4185dce7e42a9dd968b0/snowballstemmer-1.9.0.tar.gz (76kB) Collecting sphinxcontrib-websupport (from sphinx<2) Downloading https://files.pythonhosted.org/packages/2a/59/d64bda9b7480a84a3569be4dde267c0f6675b255ba63b4c8e84469940457/sphinxcontrib_websupport-1.1.2-py2.py3-none-any.whl Collecting packaging (from sphinx<2) Downloading https://files.pythonhosted.org/packages/ec/22/630ac83e8f8a9566c4f88038447ed9e16e6f10582767a01f31c769d9a71e/packaging-19.1-py2.py3-none-any.whl Collecting babel!=2.0,>=1.3 (from sphinx<2) Downloading https://files.pythonhosted.org/packages/2c/60/f2af68eb046c5de5b1fe6dd4743bf42c074f7141fe7b2737d3061533b093/Babel-2.7.0-py2.py3-none-any.whl (8.4MB) Collecting requests>=2.0.0 (from sphinx<2) Downloading https://files.pythonhosted.org/packages/51/bd/23c926cd341ea6b7dd0b2a00aba99ae0f828be89d72b2190f27c11d4b7fb/requests-2.22.0-py2.py3-none-any.whl (57kB) Collecting Jinja2>=2.3 (from sphinx<2) Downloading https://files.pythonhosted.org/packages/1d/e7/fd8b501e7a6dfe492a433deb7b9d833d39ca74916fa8bc63dd1a4947a671/Jinja2-2.10.1-py2.py3-none-any.whl (124kB) Collecting typing; python_version < "3.5" (from sphinx<2) Downloading https://files.pythonhosted.org/packages/22/30/64ca29543375759dc589ade14a6cd36382abf2bec17d67de8481bc9814d7/typing-3.7.4.1-py2-none-any.whl Collecting imagesize (from sphinx<2) Downloading https://files.pythonhosted.org/packages/fc/b6/aef66b4c52a6ad6ac18cf6ebc5731ed06d8c9ae4d3b2d9951f261150be67/imagesize-1.1.0-py2.py3-none-any.whl Collecting six>=1.5 (from sphinx<2) Downloading https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl Collecting pyparsing>=2.0.2 (from packaging->sphinx<2) Downloading https://files.pythonhosted.org/packages/11/fa/0160cd525c62d7abd076a070ff02b2b94de589f1a9789774f17d7c54058e/pyparsing-2.4.2-py2.py3-none-any.whl (65kB) Collecting attrs (from packaging->sphinx<2) Downloading https://files.pythonhosted.org/packages/23/96/d828354fa2dbdf216eaa7b7de0db692f12c234f7ef888cc14980ef40d1d2/attrs-19.1.0-py2.py3-none-any.whl Collecting pytz>=2015.7 (from babel!=2.0,>=1.3->sphinx<2) Downloading https://files.pythonhosted.org/packages/87/76/46d697698a143e05f77bec5a526bf4e56a0be61d63425b68f4ba553b51f2/pytz-2019.2-py2.py3-none-any.whl (508kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 (from requests>=2.0.0->sphinx<2) Downloading https://files.pythonhosted.org/packages/e6/60/247f23a7121ae632d62811ba7f273d0e58972d75e58a94d329d51550a47d/urllib3-1.25.3-py2.py3-none-any.whl (150kB) Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx<2) Downloading https://files.pythonhosted.org/packages/69/1b/b853c7a9d4f6a6d00749e94eb6f3a041e342a885b87340b79c1ef73e3a78/certifi-2019.6.16-py2.py3-none-any.whl (157kB) Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx<2) Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) Collecting idna<2.9,>=2.5 (from requests>=2.0.0->sphinx<2) Downloading https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl (58kB) Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx<2) Downloading https://files.pythonhosted.org/packages/fb/40/f3adb7cf24a8012813c5edb20329eb22d5d8e2a0ecf73d21d6b85865da11/MarkupSafe-1.1.1-cp27-cp27mu-manylinux1_x86_64.whl Building wheels for collected packages: mock, future, snowballstemmer Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-cp27-none-any.whl size=23756 sha256=8d33064c886d1708603a3605a9c09757fd15940e5e4f08465adf65d8315784b3 Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/.cache/pip/wheels/7e/72/92/744b532c779242b57aab4bcba80c312b30c069bbd60025e7e6 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.17.1-cp27-none-any.whl size=500236 sha256=94fe56d5caeb3d931b32d23435bc29c3ef8329ba1f3d180666bbbf853ed869d8 Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/.cache/pip/wheels/0c/61/d2/d6b7317325828fbb39ee6ad559dbe4664d0896da4721bf379e Building wheel for snowballstemmer (setup.py): started Building wheel for snowballstemmer (setup.py): finished with status 'done' Created wheel for snowballstemmer: filename=snowballstemmer-1.9.0-cp27-none-any.whl size=93833 sha256=18b296be999e9222e23f3334ea95a25148fa8b307a88a9ce3936c326257a20d8 Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/.cache/pip/wheels/93/db/97/496f1d6bbcad1fecbc58fe45363540414be519312eded82bab Successfully built mock future snowballstemmer Installing collected packages: Pygments, docutils, mock, pillow, alabaster, future, commonmark, snowballstemmer, sphinxcontrib-websupport, pyparsing, six, attrs, packaging, pytz, babel, urllib3, certifi, chardet, idna, requests, MarkupSafe, Jinja2, typing, imagesize, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Successfully installed Jinja2-2.10.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 attrs-19.1.0 babel-2.7.0 certifi-2019.6.16 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.17.1 idna-2.8 imagesize-1.1.0 mock-1.0.1 packaging-19.1 pillow-5.4.1 pyparsing-2.4.2 pytz-2019.2 readthedocs-sphinx-ext-1.0.0 recommonmark-0.5.0 requests-2.22.0 six-1.12.0 snowballstemmer-1.9.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 typing-3.7.4.1 urllib3-1.25.3 [rtd-command-info] start-time: 2019-08-29T00:58:45.940527Z, end-time: 2019-08-29T00:58:46.251032Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # General information about the project. import sys import os sys.path.insert(0, os.path.dirname(__file__)) from misc.cyverse_sphinx_conf import * # noqa project = 'DOI REQUEST QUICKSTART' copyright = '2018, CyVerse' author = 'Ramona L. Walls' version = '1.0' release = '1.0' epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://media.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://media.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("master", "/en/master/"), ], 'downloads': [ ("html", "//readthedocs.com/projects/cyverse-doi-request-quickstart/downloads/htmlzip/latest/"), ], 'subprojects': [ ], 'slug': 'cyverse-doi-request-quickstart', 'name': u'DOI_request_quickstart', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://learning.cyverse.org/projects/cyverse-doi-request-quickstart/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/', 'api_host': 'https://readthedocs.com', 'github_user': 'CyVerse-learning-materials', 'github_repo': 'DOI_request_quickstart', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '733f6cd6', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2019-08-29T00:58:46.336507Z, end-time: 2019-08-29T00:58:48.414726Z, duration: 2, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 13 source files that are out of date updating environment: 13 added, 0 changed, 0 removed reading sources... [ 7%] Addtional/doi_faq reading sources... [ 15%] Addtional/naming reading sources... [ 23%] Addtional/right4me reading sources... [ 30%] Contributors_maintainers /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/latest/lib/python2.7/site-packages/recommonmark/parser.py:65: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 38%] License reading sources... [ 46%] README reading sources... [ 53%] after reading sources... [ 61%] before reading sources... [ 69%] index reading sources... [ 76%] metadata reading sources... [ 84%] organize reading sources... [ 92%] slides/README reading sources... [100%] submit /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Addtional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:10: WARNING: Title underline too short. DOI Frequently Asked Questions ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:3: WARNING: Undefined substitution referenced: "CyVerse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:5: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:17: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:3: WARNING: Unknown target name: "cyverse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:5: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:17: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Addtional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:10: WARNING: Title underline too short. Data Commons Naming Conventions -------------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:3: WARNING: Undefined substitution referenced: "CyVerse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:5: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:17: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:3: WARNING: Unknown target name: "cyverse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:5: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:17: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Addtional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:10: WARNING: Title underline too short. Is the CyVerse Curated Data Repository right for my data? ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:16: WARNING: Title underline too short. Question 1: Do you have a CyVerse account? ===================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:27: WARNING: Bullet list ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:3: WARNING: Undefined substitution referenced: "CyVerse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:5: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:59: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:3: WARNING: Unknown target name: "cyverse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:5: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:59: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/index.rst:30: WARNING: toctree contains reference to nonexisting document u'Additional/right4me' /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/index.rst:30: WARNING: toctree contains reference to nonexisting document u'Additional/naming' /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/index.rst:144: WARNING: Duplicate substitution definition name: "Github Repo Link". looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Contributors_maintainers.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/License.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/README.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/slides/README.md: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 7%] Addtional/doi_faq writing output... [ 15%] Addtional/naming writing output... [ 23%] Addtional/right4me writing output... [ 30%] Contributors_maintainers writing output... [ 38%] License writing output... [ 46%] README writing output... [ 53%] after writing output... [ 61%] before writing output... [ 69%] index writing output... [ 76%] metadata writing output... [ 84%] organize writing output... [ 92%] slides/README writing output... [100%] submit generating indices... genindex writing additional pages... search copying images... [ 33%] ./img/data_commons/DataCommons_DrkBlue.png copying images... [ 66%] ./img/homeicon.png copying images... [100%] ./img/cyverse_rgb.png copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/_static' does not exist done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 42 warnings. The HTML pages are in _build/html. [rtd-command-info] start-time: 2019-08-29T00:58:48.526112Z, end-time: 2019-08-29T00:58:50.336298Z, duration: 1, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 13 added, 0 changed, 0 removed reading sources... [ 7%] Addtional/doi_faq reading sources... [ 15%] Addtional/naming reading sources... [ 23%] Addtional/right4me reading sources... [ 30%] Contributors_maintainers /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/latest/lib/python2.7/site-packages/recommonmark/parser.py:65: UserWarning: Container node skipped: type=document warn("Container node skipped: type={0}".format(mdnode.t)) reading sources... [ 38%] License reading sources... [ 46%] README reading sources... [ 53%] after reading sources... [ 61%] before reading sources... [ 69%] index reading sources... [ 76%] metadata reading sources... [ 84%] organize reading sources... [ 92%] slides/README reading sources... [100%] submit /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Addtional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:10: WARNING: Title underline too short. DOI Frequently Asked Questions ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:3: WARNING: Undefined substitution referenced: "CyVerse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:5: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:17: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:3: WARNING: Unknown target name: "cyverse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:5: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/doi_faq.rst:17: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Addtional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:10: WARNING: Title underline too short. Data Commons Naming Conventions -------------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:3: WARNING: Undefined substitution referenced: "CyVerse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:5: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:17: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:3: WARNING: Unknown target name: "cyverse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:5: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst:17: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:1: WARNING: Problems with "include" directive path: InputError: [Errno 2] No such file or directory: 'Addtional/cyverse_rst_defined_substitutions.txt'. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:10: WARNING: Title underline too short. Is the CyVerse Curated Data Repository right for my data? ---------------- /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:16: WARNING: Title underline too short. Question 1: Do you have a CyVerse account? ===================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:23: WARNING: Title underline too short. Question 2: Is your data ready for publication? ============================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:27: WARNING: Bullet list ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:35: WARNING: Title underline too short. Question 3: Is your data suitable for reuse in scientific analyses? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:42: WARNING: Title underline too short. Question 4: Is there a canonical repository for your data? ======================================== /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:3: WARNING: Undefined substitution referenced: "CyVerse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:5: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:59: WARNING: Undefined substitution referenced: "Home_Icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:3: WARNING: Unknown target name: "cyverse logo". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:5: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst:59: WARNING: Unknown target name: "home_icon". /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/index.rst:30: WARNING: toctree contains reference to nonexisting document u'Additional/right4me' /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/index.rst:30: WARNING: toctree contains reference to nonexisting document u'Additional/naming' /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/index.rst:144: WARNING: Duplicate substitution definition name: "Github Repo Link". looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/naming.rst: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Addtional/right4me.rst: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/Contributors_maintainers.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/License.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/README.md: WARNING: document isn't included in any toctree /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/slides/README.md: WARNING: document isn't included in any toctree done preparing documents... done assembling single document... before organize metadata submit after Addtional/doi_faq writing... done writing additional files... copying images... [ 33%] ./img/data_commons/DataCommons_DrkBlue.png copying images... [ 66%] ./img/homeicon.png copying images... [100%] ./img/cyverse_rgb.png copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/latest/_static' does not exist done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded, 42 warnings. The HTML page is in _build/localmedia.