Read the Docs build information
Build id: 235006
Project: life-epigenetics-methylprep
Version: latest
Commit: ec640cca9ea9d7774b8f20fe347dbc85e6904e0c
Date: 2019-08-22T19:42:26.035263Z
State: finished
Success: False


[rtd-command-info] start-time: 2019-08-22T19:42:26.506379Z, end-time: 2019-08-22T19:42:26.522330Z, duration: 0, exit-code: 0
git remote set-url origin https://github.com/LifeEGX/methylprep.git


[rtd-command-info] start-time: 2019-08-22T19:42:26.604267Z, end-time: 2019-08-22T19:42:26.902536Z, duration: 0, exit-code: 0
git fetch origin --tags --prune --prune-tags --depth 50
From https://github.com/LifeEGX/methylprep
   3815bf3..ec640cc  master     -> origin/master

[rtd-command-info] start-time: 2019-08-22T19:42:27.199853Z, end-time: 2019-08-22T19:42:27.218304Z, duration: 0, exit-code: 0
git checkout --force origin/master
Previous HEAD position was 3815bf3 Renamed repo and all internal references (#14)
HEAD is now at ec640cc Update README.md

[rtd-command-info] start-time: 2019-08-22T19:42:27.300963Z, end-time: 2019-08-22T19:42:27.327083Z, duration: 0, exit-code: 0
git clean -d -f -f
Removing _build/doctrees-epub/
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[rtd-command-info] start-time: 2019-08-22T19:42:28.619549Z, end-time: 2019-08-22T19:42:34.001669Z, duration: 5, exit-code: 0
python3.7 -mvirtualenv --no-site-packages --no-download 
Using base prefix '/home/docs/.pyenv/versions/3.7.1'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/bin/python3.7
Not overwriting existing python script /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/bin/python (you must use /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/bin/python3.7)
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2019-08-22T19:42:34.083480Z, end-time: 2019-08-22T19:42:35.259635Z, duration: 1, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/.cache/pip pip
Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (19.2.2)

[rtd-command-info] start-time: 2019-08-22T19:42:35.338236Z, end-time: 2019-08-22T19:42:37.503575Z, duration: 2, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Requirement already up-to-date: Pygments==2.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (2.3.1)
Requirement already up-to-date: setuptools==41.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (41.0.1)
Requirement already up-to-date: docutils==0.14 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (0.14)
Requirement already up-to-date: mock==1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (1.0.1)
Requirement already up-to-date: pillow==5.4.1 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (5.4.1)
Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (0.7.12)
Requirement already up-to-date: commonmark==0.8.1 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (0.8.1)
Requirement already up-to-date: recommonmark==0.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (0.5.0)
Requirement already up-to-date: sphinx<2 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (1.8.5)
Requirement already up-to-date: sphinx-rtd-theme<0.5 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (0.4.3)
Requirement already up-to-date: readthedocs-sphinx-ext<1.1 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (1.0.0)
Requirement already satisfied, skipping upgrade: future in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from commonmark==0.8.1) (0.17.1)
Requirement already satisfied, skipping upgrade: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from sphinx<2) (1.1.2)
Requirement already satisfied, skipping upgrade: packaging in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from sphinx<2) (19.1)
Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from sphinx<2) (2.10.1)
Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from sphinx<2) (2.7.0)
Requirement already satisfied, skipping upgrade: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from sphinx<2) (1.1.0)
Requirement already satisfied, skipping upgrade: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from sphinx<2) (2.22.0)
Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from sphinx<2) (1.9.0)
Requirement already satisfied, skipping upgrade: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from sphinx<2) (1.12.0)
Requirement already satisfied, skipping upgrade: attrs in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from packaging->sphinx<2) (19.1.0)
Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from packaging->sphinx<2) (2.4.2)
Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx<2) (1.1.1)
Requirement already satisfied, skipping upgrade: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx<2) (2019.2)
Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx<2) (2019.6.16)
Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx<2) (3.0.4)
Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx<2) (1.25.3)
Requirement already satisfied, skipping upgrade: idna<2.9,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx<2) (2.8)

[rtd-command-info] start-time: 2019-08-22T19:42:37.584368Z, end-time: 2019-08-22T19:42:38.768188Z, duration: 1, exit-code: 0
python -m pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/.cache/pip -r requirements.txt
Requirement already satisfied: numpy in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.17.0)
Requirement already satisfied: pandas in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 2)) (0.25.0)
Requirement already satisfied: scipy in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 3)) (1.3.1)
Requirement already satisfied: statsmodels in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (0.10.1)
Requirement already satisfied: pytest in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 5)) (5.1.1)
Requirement already satisfied: coverage in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (4.5.4)
Requirement already satisfied: coveralls-python in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 7)) (0.0.1)
Requirement already satisfied: sphinxcontrib-apidoc in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 8)) (0.3.0)
Requirement already satisfied: m2r in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 9)) (0.2.1)
Requirement already satisfied: nbsphinx in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 10)) (0.4.2)
Requirement already satisfied: tqdm in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 11)) (4.34.0)
Requirement already satisfied: pytz>=2017.2 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 2)) (2019.2)
Requirement already satisfied: python-dateutil>=2.6.1 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 2)) (2.8.0)
Requirement already satisfied: patsy>=0.4.0 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from statsmodels->-r requirements.txt (line 4)) (0.5.1)
Requirement already satisfied: wcwidth in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from pytest->-r requirements.txt (line 5)) (0.1.7)
Requirement already satisfied: more-itertools>=4.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from pytest->-r requirements.txt (line 5)) (7.2.0)
Requirement already satisfied: attrs>=17.4.0 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from pytest->-r requirements.txt (line 5)) (19.1.0)
Requirement already satisfied: py>=1.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from pytest->-r requirements.txt (line 5)) (1.8.0)
Requirement already satisfied: importlib-metadata>=0.12; python_version < "3.8" in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from pytest->-r requirements.txt (line 5)) (0.19)
Requirement already satisfied: pluggy<1.0,>=0.12 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from pytest->-r requirements.txt (line 5)) (0.12.0)
Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from pytest->-r requirements.txt (line 5)) (19.1)
Requirement already satisfied: atomicwrites>=1.0 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from pytest->-r requirements.txt (line 5)) (1.3.0)
Requirement already satisfied: pbr in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-apidoc->-r requirements.txt (line 8)) (5.4.2)
Requirement already satisfied: Sphinx>=1.6.0 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-apidoc->-r requirements.txt (line 8)) (1.8.5)
Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from m2r->-r requirements.txt (line 9)) (0.14)
Requirement already satisfied: mistune in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from m2r->-r requirements.txt (line 9)) (0.8.4)
Requirement already satisfied: nbformat in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from nbsphinx->-r requirements.txt (line 10)) (4.4.0)
Requirement already satisfied: traitlets in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from nbsphinx->-r requirements.txt (line 10)) (4.3.2)
Requirement already satisfied: jinja2 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from nbsphinx->-r requirements.txt (line 10)) (2.10.1)
Requirement already satisfied: nbconvert!=5.4 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from nbsphinx->-r requirements.txt (line 10)) (5.6.0)
Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from python-dateutil>=2.6.1->pandas->-r requirements.txt (line 2)) (1.12.0)
Requirement already satisfied: zipp>=0.5 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from importlib-metadata>=0.12; python_version < "3.8"->pytest->-r requirements.txt (line 5)) (0.5.2)
Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from packaging->pytest->-r requirements.txt (line 5)) (2.4.2)
Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from Sphinx>=1.6.0->sphinxcontrib-apidoc->-r requirements.txt (line 8)) (0.7.12)
Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from Sphinx>=1.6.0->sphinxcontrib-apidoc->-r requirements.txt (line 8)) (1.9.0)
Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from Sphinx>=1.6.0->sphinxcontrib-apidoc->-r requirements.txt (line 8)) (2.7.0)
Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from Sphinx>=1.6.0->sphinxcontrib-apidoc->-r requirements.txt (line 8)) (2.22.0)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from Sphinx>=1.6.0->sphinxcontrib-apidoc->-r requirements.txt (line 8)) (41.0.1)
Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from Sphinx>=1.6.0->sphinxcontrib-apidoc->-r requirements.txt (line 8)) (1.1.2)
Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from Sphinx>=1.6.0->sphinxcontrib-apidoc->-r requirements.txt (line 8)) (2.3.1)
Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from Sphinx>=1.6.0->sphinxcontrib-apidoc->-r requirements.txt (line 8)) (1.1.0)
Requirement already satisfied: jupyter-core in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from nbformat->nbsphinx->-r requirements.txt (line 10)) (4.5.0)
Requirement already satisfied: ipython-genutils in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from nbformat->nbsphinx->-r requirements.txt (line 10)) (0.2.0)
Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from nbformat->nbsphinx->-r requirements.txt (line 10)) (3.0.2)
Requirement already satisfied: decorator in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from traitlets->nbsphinx->-r requirements.txt (line 10)) (4.4.0)
Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from jinja2->nbsphinx->-r requirements.txt (line 10)) (1.1.1)
Requirement already satisfied: testpath in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from nbconvert!=5.4->nbsphinx->-r requirements.txt (line 10)) (0.4.2)
Requirement already satisfied: bleach in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from nbconvert!=5.4->nbsphinx->-r requirements.txt (line 10)) (3.1.0)
Requirement already satisfied: entrypoints>=0.2.2 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from nbconvert!=5.4->nbsphinx->-r requirements.txt (line 10)) (0.3)
Requirement already satisfied: pandocfilters>=1.4.1 in /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/envs/latest/lib/python3.7/site-packages (from nbconvert!=5.4->nbsphinx->-r requirements.txt (line 10)) (1.4.2)
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[rtd-command-info] start-time: 2019-08-22T19:42:41.252867Z, end-time: 2019-08-22T19:42:41.567500Z, duration: 0, exit-code: 0
cat conf.py
# -*- coding: utf-8 -*-
#
# Configuration file for the Sphinx documentation builder.
#
# This file does only contain a selection of the most common options. For a
# full list see the documentation:
# http://www.sphinx-doc.org/en/master/config

# -- Path setup --------------------------------------------------------------

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
import os
import sys
sys.path.insert(0, os.path.abspath('.'))


# -- Project information -----------------------------------------------------

project = 'methylprep'
copyright = '2019, Life Epigenetics'
author = 'Life Epigenetics'

# The short X.Y version
version = ''
# The full version, including alpha/beta/rc tags
release = '1.0'


# -- General configuration ---------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinxcontrib.apidoc',
    'm2r',
    'nbsphinx'
]

# instead of CLI "sphinx-autodoc . _build/html" you write this
apidoc_module_dir = '.'
apidoc_output_dir = '_sphinx_build'
apidoc_excluded_paths = ['tests']
apidoc_separate_modules = False

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_sphinx_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
source_suffix = ['.rst', '.md']
# source_suffix = '.rst'

# The master toctree document.
master_doc = 'index'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This pattern also affects html_static_path and html_extra_path .
exclude_patterns = ['_sphinx_build', 'Thumbs.db', '.DS_Store']

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'


# -- Options for HTML output -------------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
html_theme =  'sphinx_rtd_theme' #'alabaster'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_sphinx_static']

# Custom sidebar templates, must be a dictionary that maps document names
# to template names.
#
# The default sidebars (for documents that don't match any pattern) are
# defined by theme itself.  Builtin themes are using these templates by
# default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
# 'searchbox.html']``.
#
# html_sidebars = {}


# -- Options for HTMLHelp output ---------------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = 'methylpredoc'


# -- Options for LaTeX output ------------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'methylprep.tex', 'methylprep Documentation',
     'Life Epigenetics', 'manual'),
]


# -- Options for manual page output ------------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'methylprep', 'methylprep Documentation',
     [author], 1)
]


# -- Options for Texinfo output ----------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'methylprep', 'methylprep Documentation',
     author, 'methylprep', 'One line description of project.',
     'Miscellaneous'),
]


# -- Extension configuration -------------------------------------------------




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://media.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://media.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ],
    'downloads': [ 
    ("html", "//readthedocs.com/projects/life-epigenetics-methylprep/downloads/htmlzip/latest/"),
    ("epub", "//readthedocs.com/projects/life-epigenetics-methylprep/downloads/epub/latest/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'life-epigenetics-methylprep',
    'name': u'methylprep',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://life-epigenetics-methylprep.readthedocs-hosted.com/en/latest/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'LifeEGX',
    'github_repo': 'methylprep',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': 'ec640cca',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

[rtd-command-info] start-time: 2019-08-22T19:42:41.650117Z, end-time: 2019-08-22T19:42:54.512285Z, duration: 12, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.8.5
loading translations [en]... done
making output directory...
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/conf.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/setup.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/methylprep.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/methylprep.files.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/methylprep.models.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/methylprep.processing.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/methylprep.utils.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/modules.rst.
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 13 source files that are out of date
updating environment: 13 added, 0 changed, 0 removed
reading sources... [  7%] README
reading sources... [ 15%] docs/README
reading sources... [ 23%] docs/cli
reading sources... [ 30%] docs/installation
reading sources... [ 38%] docs/methylprep_tutorial
reading sources... [ 46%] docs/package
reading sources... [ 53%] docs/source/methpype
reading sources... [ 61%] docs/source/methpype.arrays
reading sources... [ 69%] docs/source/methpype.preprocess
reading sources... [ 76%] docs/source/methpype.samples
reading sources... [ 84%] docs/source/methpype.utils
reading sources... [ 92%] docs/source/modules
reading sources... [100%] index

/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/README.md:188: WARNING: Title level inconsistent:

``get_sample_sheet``
~~~~~~~~~~~~~~~~~~~~~~~~
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/README.md:218: WARNING: Title level inconsistent:

``get_manifest``
~~~~~~~~~~~~~~~~~~~~
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/README.md:252: WARNING: Title level inconsistent:

``get_raw_datasets``
~~~~~~~~~~~~~~~~~~~~~~~~
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/methylprep_tutorial.md:6: WARNING: Duplicate explicit target name: "methylprep".
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/methylprep_tutorial.md:6: WARNING: Duplicate explicit target name: "methqc".
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/methylprep_tutorial.md:362: WARNING: Title level inconsistent:

Filtering by Probes
~~~~~~~~~~~~~~~~~~~
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/methylprep_tutorial.md:433: WARNING: Title level inconsistent:

Visual Filtering Functions
~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.rst:2: WARNING: Title underline too short.

methylprep package
================
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.rst:7: WARNING: toctree contains reference to nonexisting document 'docs/source/methylprep.arrays'
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.rst:7: WARNING: toctree contains reference to nonexisting document 'docs/source/methylprep.preprocess'
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.rst:7: WARNING: toctree contains reference to nonexisting document 'docs/source/methylprep.samples'
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.rst:7: WARNING: toctree contains reference to nonexisting document 'docs/source/methylprep.utils'
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.rst:18: WARNING: Title underline too short.

methylprep.cli module
-------------------
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.rst:18: WARNING: Title underline too short.

methylprep.cli module
-------------------
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.arrays.rst:2: WARNING: Title underline too short.

methylprep.arrays package
=======================
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.arrays.rst:8: WARNING: Title underline too short.

methylprep.arrays.arrays module
-----------------------------
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.arrays.rst:8: WARNING: Title underline too short.

methylprep.arrays.arrays module
-----------------------------
WARNING: autodoc: failed to import module 'arrays.arrays' from module 'methylprep'; the following exception was raised:
No module named 'methylprep.arrays'
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.arrays.rst:16: WARNING: Title underline too short.

methylprep.arrays.controls module
-------------------------------
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.arrays.rst:16: WARNING: Title underline too short.

methylprep.arrays.controls module
-------------------------------
WARNING: autodoc: failed to import module 'arrays.controls' from module 'methylprep'; the following exception was raised:
No module named 'methylprep.arrays'
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.arrays.rst:24: WARNING: Title underline too short.

methylprep.arrays.manifest module
-------------------------------
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.arrays.rst:24: WARNING: Title underline too short.

methylprep.arrays.manifest module
-------------------------------
WARNING: autodoc: failed to import module 'arrays.manifest' from module 'methylprep'; the following exception was raised:
No module named 'methylprep.arrays'
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.arrays.rst:32: WARNING: Title underline too short.

methylprep.arrays.probes module
-----------------------------
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.arrays.rst:32: WARNING: Title underline too short.

methylprep.arrays.probes module
-----------------------------
WARNING: autodoc: failed to import module 'arrays.probes' from module 'methylprep'; the following exception was raised:
No module named 'methylprep.arrays'
WARNING: autodoc: failed to import module 'arrays' from module 'methylprep'; the following exception was raised:
No module named 'methylprep.arrays'
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.preprocess.rst:2: WARNING: Title underline too short.

methylprep.preprocess package
===========================
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.preprocess.rst:8: WARNING: Title underline too short.

methylprep.preprocess.idat module
-------------------------------
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.preprocess.rst:8: WARNING: Title underline too short.

methylprep.preprocess.idat module
-------------------------------
WARNING: autodoc: failed to import module 'preprocess.idat' from module 'methylprep'; the following exception was raised:
No module named 'methylprep.preprocess'
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.preprocess.rst:16: WARNING: Title underline too short.

methylprep.preprocess.meth\_dataset module
----------------------------------------
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.preprocess.rst:16: WARNING: Title underline too short.

methylprep.preprocess.meth\_dataset module
----------------------------------------
WARNING: autodoc: failed to import module 'preprocess.meth_dataset' from module 'methylprep'; the following exception was raised:
No module named 'methylprep.preprocess'
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.preprocess.rst:24: WARNING: Title underline too short.

methylprep.preprocess.noob module
-------------------------------
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.preprocess.rst:24: WARNING: Title underline too short.

methylprep.preprocess.noob module
-------------------------------
WARNING: autodoc: failed to import module 'preprocess.noob' from module 'methylprep'; the following exception was raised:
No module named 'methylprep.preprocess'
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.preprocess.rst:32: WARNING: Title underline too short.

methylprep.preprocess.pipeline module
-----------------------------------
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/docs/source/methpype.preprocess.rst:32: WARNING: Title underline too short.

methylprep.preprocess.pipeline module
-----------------------------------
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methylprep.preprocess.raw\_dataset module
---------------------------------------
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methylprep.preprocess.raw\_dataset module
---------------------------------------
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methylprep.preprocess.utils module
--------------------------------
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methylprep.preprocess.utils module
--------------------------------
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methylprep.samples package
========================
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methylprep.samples.sample module
------------------------------
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methylprep.samples.sample module
------------------------------
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methylprep.samples.sample\_sheet module
-------------------------------------
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methylprep.samples.sample\_sheet module
-------------------------------------
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methylprep.utils package
======================
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methylprep.utils.data module
--------------------------
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methylprep.utils.data module
--------------------------
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methylprep.utils.decorators module
--------------------------------
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methylprep.utils.decorators module
--------------------------------
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methylprep.utils.files module
---------------------------
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methylprep.utils.files module
---------------------------
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Examples:
--------
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Examples:
--------
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Examples:
--------
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Examples:
--------
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methylprep
========
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Welcome to methylprep's documentation!
====================================
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~~~~~~~~~~~~~~~~~~~~~~~~
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``get_raw_datasets``
~~~~~~~~~~~~~~~~~~~~~~~~
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``get_sample_sheet``
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Filtering by Probes
~~~~~~~~~~~~~~~~~~~
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Visual Filtering Functions
~~~~~~~~~~~~~~~~~~~~~~~~~~
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methylprep package
================
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methylprep.cli module
-------------------
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methylprep.cli module
-------------------
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methylprep.arrays package
=======================
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methylprep.arrays.arrays module
-----------------------------
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methylprep.arrays.arrays module
-----------------------------
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methylprep.arrays.controls module
-------------------------------
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methylprep.arrays.controls module
-------------------------------
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methylprep.arrays.manifest module
-------------------------------
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methylprep.arrays.manifest module
-------------------------------
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methylprep.arrays.probes module
-----------------------------
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methylprep.arrays.probes module
-----------------------------
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methylprep.preprocess package
===========================
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methylprep.preprocess.idat module
-------------------------------
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methylprep.preprocess.idat module
-------------------------------
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methylprep.preprocess.meth\_dataset module
----------------------------------------
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methylprep.preprocess.meth\_dataset module
----------------------------------------
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methylprep.preprocess.noob module
-------------------------------
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methylprep.preprocess.noob module
-------------------------------
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methylprep.preprocess.pipeline module
-----------------------------------
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methylprep.preprocess.pipeline module
-----------------------------------
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methylprep.preprocess.raw\_dataset module
---------------------------------------
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methylprep.preprocess.raw\_dataset module
---------------------------------------
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methylprep.preprocess.utils module
--------------------------------
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methylprep.preprocess.utils module
--------------------------------
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methylprep.samples package
========================
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methylprep.samples.sample module
------------------------------
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methylprep.samples.sample module
------------------------------
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methylprep.samples.sample\_sheet module
-------------------------------------
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methylprep.samples.sample\_sheet module
-------------------------------------
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methylprep.utils package
======================
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methylprep.utils.data module
--------------------------
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methylprep.utils.data module
--------------------------
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methylprep.utils.decorators module
--------------------------------
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methylprep.utils.decorators module
--------------------------------
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methylprep.utils.files module
---------------------------
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methylprep.utils.files module
---------------------------
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Examples:
--------
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Examples:
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Examples:
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methylprep
========
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Welcome to methylprep's documentation!
====================================
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``get_raw_datasets``
~~~~~~~~~~~~~~~~~~~~~~~~
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``get_sample_sheet``
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Filtering by Probes
~~~~~~~~~~~~~~~~~~~
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Visual Filtering Functions
~~~~~~~~~~~~~~~~~~~~~~~~~~
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methylprep package
================
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methylprep.cli module
-------------------
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methylprep.cli module
-------------------
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methylprep.arrays package
=======================
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methylprep.arrays.arrays module
-----------------------------
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methylprep.arrays.arrays module
-----------------------------
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methylprep.arrays.controls module
-------------------------------
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methylprep.arrays.controls module
-------------------------------
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methylprep.arrays.manifest module
-------------------------------
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methylprep.arrays.manifest module
-------------------------------
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methylprep.arrays.probes module
-----------------------------
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methylprep.arrays.probes module
-----------------------------
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methylprep.preprocess package
===========================
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methylprep.preprocess.idat module
-------------------------------
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methylprep.preprocess.idat module
-------------------------------
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methylprep.preprocess.meth\_dataset module
----------------------------------------
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methylprep.preprocess.meth\_dataset module
----------------------------------------
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methylprep.preprocess.noob module
-------------------------------
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methylprep.preprocess.noob module
-------------------------------
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methylprep.preprocess.pipeline module
-----------------------------------
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methylprep.preprocess.pipeline module
-----------------------------------
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methylprep.preprocess.raw\_dataset module
---------------------------------------
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methylprep.preprocess.raw\_dataset module
---------------------------------------
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methylprep.preprocess.utils module
--------------------------------
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methylprep.preprocess.utils module
--------------------------------
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methylprep.samples package
========================
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methylprep.samples.sample module
------------------------------
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methylprep.samples.sample module
------------------------------
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methylprep.samples.sample\_sheet module
-------------------------------------
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methylprep.samples.sample\_sheet module
-------------------------------------
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methylprep.utils package
======================
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methylprep.utils.data module
--------------------------
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methylprep.utils.data module
--------------------------
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methylprep.utils.decorators module
--------------------------------
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methylprep.utils.decorators module
--------------------------------
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methylprep.utils.files module
---------------------------
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methylprep.utils.files module
---------------------------
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Examples:
--------
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Examples:
--------
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Examples:
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Examples:
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methylprep
========
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Welcome to methylprep's documentation!
====================================
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The LaTeX files are in _build/latex.
Run 'make' in that directory to run these through (pdf)latex
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cat latexmkrc
$latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S';
$pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S';
$lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S';
$xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S';
$makeindex = 'makeindex -s python.ist %O -o %D %S';
add_cus_dep( "glo", "gls", 0, "makeglo" );
sub makeglo {
 return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" );
}

[rtd-command-info] start-time: 2019-08-22T19:43:12.373025Z, end-time: 2019-08-22T19:43:14.275140Z, duration: 1, exit-code: 12
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! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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(That makes 100 errors; please try again.)
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[1] [2]
Chapter 1.
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(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
(inputenc)                not set up for use with LaTeX.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  
(That makes 100 errors; please try again.)
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on life-epigenetics-methylprep.log.
Latexmk: Index file 'life-epigenetics-methylprep.idx' was written
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'life-epigenetics-methylprep.out'
      'life-epigenetics-methylprep.toc'
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[1] [2]
Chapter 1.
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! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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! Package inputenc Error: Unicode char █ (U+2588)
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
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l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  

! Package inputenc Error: Unicode char █ (U+2588)
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See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.680 ...m}{00}:00, \PYG{l+m}{18}.08s/it\PYG{o}{]}
                                                  
(That makes 100 errors; please try again.)
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on life-epigenetics-methylprep.log.
Latexmk: Index file 'life-epigenetics-methylprep.idx' was written
Failure to make 'life-epigenetics-methylprep.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 256
Latexmk: Errors, in force_mode: so I tried finishing targets

[rtd-command-info] start-time: 2019-08-22T19:43:14.390941Z, end-time: 2019-08-22T19:43:28.901956Z, duration: 14, exit-code: 0
python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub
Running Sphinx v1.8.5
loading translations [en]... done
making output directory...
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/conf.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/setup.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/methylprep.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/methylprep.files.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/methylprep.models.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/methylprep.processing.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/methylprep.utils.rst.
Creating file /home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/_sphinx_build/modules.rst.
building [mo]: targets for 0 po files that are out of date
building [epub]: targets for 13 source files that are out of date
updating environment: 13 added, 0 changed, 0 removed
reading sources... [  7%] README
reading sources... [ 15%] docs/README
reading sources... [ 23%] docs/cli
reading sources... [ 30%] docs/installation
reading sources... [ 38%] docs/methylprep_tutorial
reading sources... [ 46%] docs/package
reading sources... [ 53%] docs/source/methpype
reading sources... [ 61%] docs/source/methpype.arrays
reading sources... [ 69%] docs/source/methpype.preprocess
reading sources... [ 76%] docs/source/methpype.samples
reading sources... [ 84%] docs/source/methpype.utils
reading sources... [ 92%] docs/source/modules
reading sources... [100%] index

/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/README.md:188: WARNING: Title level inconsistent:

``get_sample_sheet``
~~~~~~~~~~~~~~~~~~~~~~~~
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/README.md:218: WARNING: Title level inconsistent:

``get_manifest``
~~~~~~~~~~~~~~~~~~~~
/home/docs/checkouts/readthedocs.org/user_builds/life-epigenetics-methylprep/checkouts/latest/README.md:252: WARNING: Title level inconsistent:

``get_raw_datasets``
~~~~~~~~~~~~~~~~~~~~~~~~
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Filtering by Probes
~~~~~~~~~~~~~~~~~~~
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Visual Filtering Functions
~~~~~~~~~~~~~~~~~~~~~~~~~~
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methylprep package
================
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methylprep.cli module
-------------------
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methylprep.cli module
-------------------
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methylprep.arrays package
=======================
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methylprep.arrays.arrays module
-----------------------------
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methylprep.arrays.arrays module
-----------------------------
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methylprep.arrays.controls module
-------------------------------
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methylprep.arrays.controls module
-------------------------------
WARNING: autodoc: failed to import module 'arrays.controls' from module 'methylprep'; the following exception was raised:
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methylprep.arrays.manifest module
-------------------------------
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methylprep.arrays.manifest module
-------------------------------
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No module named 'methylprep.arrays'
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methylprep.arrays.probes module
-----------------------------
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methylprep.arrays.probes module
-----------------------------
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methylprep.preprocess package
===========================
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methylprep.preprocess.idat module
-------------------------------
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methylprep.preprocess.idat module
-------------------------------
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methylprep.preprocess.meth\_dataset module
----------------------------------------
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methylprep.preprocess.meth\_dataset module
----------------------------------------
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methylprep.preprocess.noob module
-------------------------------
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methylprep.preprocess.noob module
-------------------------------
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methylprep.preprocess.pipeline module
-----------------------------------
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methylprep.preprocess.pipeline module
-----------------------------------
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methylprep.preprocess.raw\_dataset module
---------------------------------------
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methylprep.preprocess.raw\_dataset module
---------------------------------------
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methylprep.preprocess.utils module
--------------------------------
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methylprep.preprocess.utils module
--------------------------------
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methylprep.samples package
========================
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methylprep.samples.sample module
------------------------------
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methylprep.samples.sample module
------------------------------
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methylprep.samples.sample\_sheet module
-------------------------------------
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methylprep.samples.sample\_sheet module
-------------------------------------
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methylprep.utils package
======================
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methylprep.utils.data module
--------------------------
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methylprep.utils.data module
--------------------------
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methylprep.utils.decorators module
--------------------------------
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methylprep.utils.decorators module
--------------------------------
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methylprep.utils.files module
---------------------------
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methylprep.utils.files module
---------------------------
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Examples:
--------
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Examples:
--------
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Examples:
--------
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Examples:
--------
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methylprep
========
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Welcome to methylprep's documentation!
====================================
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``get_sample_sheet``
~~~~~~~~~~~~~~~~~~~~~~~~
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``get_manifest``
~~~~~~~~~~~~~~~~~~~~
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``get_raw_datasets``
~~~~~~~~~~~~~~~~~~~~~~~~
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