Read the Docs build information Build id: 226339 Project: tiledb-inc-tiledb-py Version: latest Commit: d381a224521ef320c499c2eb2295e0193fe782ce Date: 2019-07-24T19:56:36.314566Z State: finished Success: True [rtd-command-info] start-time: 2019-07-24T19:56:36.838642Z, end-time: 2019-07-24T19:56:36.847471Z, duration: 0, exit-code: 0 git remote set-url origin https://github.com/TileDB-Inc/TileDB-Py.git [rtd-command-info] start-time: 2019-07-24T19:56:36.926386Z, end-time: 2019-07-24T19:56:37.244256Z, duration: 0, exit-code: 0 git fetch --tags --prune --prune-tags --depth 50 From https://github.com/TileDB-Inc/TileDB-Py c622467..d381a22 dev -> origin/dev + d64e705...98f7d11 ihn/win_rtlibdirs -> origin/ihn/win_rtlibdirs (forced update) [rtd-command-info] start-time: 2019-07-24T19:56:37.543114Z, end-time: 2019-07-24T19:56:37.553501Z, duration: 0, exit-code: 0 git checkout --force origin/dev Previous HEAD position was c622467 More Docker notes improvements HEAD is now at d381a22 Enable cython emit_linenums for debugger source-mapping [rtd-command-info] start-time: 2019-07-24T19:56:37.648286Z, end-time: 2019-07-24T19:56:37.661377Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-07-24T19:56:38.734465Z, end-time: 2019-07-24T19:56:42.277217Z, duration: 3, exit-code: 0 python3.7 -mvirtualenv --no-site-packages --no-download Using base prefix '/home/docs/.pyenv/versions/3.7.1' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2019-07-24T19:56:42.367060Z, end-time: 2019-07-24T19:56:45.081038Z, duration: 2, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip pip Collecting pip Downloading https://files.pythonhosted.org/packages/62/ca/94d32a6516ed197a491d17d46595ce58a83cbb2fca280414e57cd86b84dc/pip-19.2.1-py2.py3-none-any.whl (1.4MB) Installing collected packages: pip Found existing installation: pip 18.1 Uninstalling pip-18.1: Successfully uninstalled pip-18.1 Successfully installed pip-19.2.1 [rtd-command-info] start-time: 2019-07-24T19:56:45.292256Z, end-time: 2019-07-24T19:56:56.795718Z, duration: 11, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 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https://files.pythonhosted.org/packages/e6/60/247f23a7121ae632d62811ba7f273d0e58972d75e58a94d329d51550a47d/urllib3-1.25.3-py2.py3-none-any.whl (150kB) Collecting idna<2.9,>=2.5 (from requests>=2.0.0->sphinx<2) Downloading https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl (58kB) Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx<2) Downloading https://files.pythonhosted.org/packages/69/1b/b853c7a9d4f6a6d00749e94eb6f3a041e342a885b87340b79c1ef73e3a78/certifi-2019.6.16-py2.py3-none-any.whl (157kB) Building wheels for collected packages: mock, future, snowballstemmer Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-cp37-none-any.whl size=23755 sha256=eddebede162ae0f35e99c24f8c372b962f0896f77578ebd77b31003b9a016311 Stored in directory: 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(435kB) Building wheels for collected packages: psutil Building wheel for psutil (setup.py): started Building wheel for psutil (setup.py): finished with status 'done' Created wheel for psutil: filename=psutil-5.6.3-cp37-cp37m-linux_x86_64.whl size=277689 sha256=4948297d4e7136940c126397435ad6cce045eeefae6459ca4e4856615b484725 Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip/wheels/90/7e/74/bb640d77775e6b6a78bcc3120f9fea4d2a28b2706de1cff37d Successfully built psutil Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil Successfully installed cmake-3.14.4 cython-0.29.12 numpy-1.16.4 psutil-5.6.3 setuptools-scm-3.3.3 [rtd-command-info] start-time: 2019-07-24T19:57:07.188990Z, end-time: 2019-07-24T20:06:59.019236Z, duration: 591, exit-code: 0 python ./setup.py install --force libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) -- Adding Spdlog as an external project -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) -- Adding TBB as an external project -- Not found clang-tidy -- Not found clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build Scanning dependencies of target ep_spdlog Scanning dependencies of target ep_curl [ 1%] Creating directories for 'ep_spdlog' [ 3%] Creating directories for 'ep_curl' [ 5%] Performing download step (download, verify and extract) for 'ep_curl' [ 7%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 8%] No patch step for 'ep_spdlog' [ 10%] No update step for 'ep_spdlog' [ 12%] No configure step for 'ep_spdlog' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 14%] No build step for 'ep_spdlog' [ 16%] No patch step for 'ep_curl' [ 17%] No install step for 'ep_spdlog' [ 19%] No update step for 'ep_curl' [ 21%] Performing configure step for 'ep_curl' [ 23%] Completed 'ep_spdlog' [ 23%] Built target ep_spdlog Scanning dependencies of target ep_lz4 [ 25%] Creating directories for 'ep_lz4' [ 26%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 28%] No patch step for 'ep_lz4' [ 30%] No update step for 'ep_lz4' [ 32%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 33%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 35%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 37%] Completed 'ep_lz4' [ 37%] Built target ep_lz4 Scanning dependencies of target ep_zstd [ 39%] Creating directories for 'ep_zstd' [ 41%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 42%] No patch step for 'ep_zstd' [ 44%] No update step for 'ep_zstd' [ 46%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 48%] Performing build step for 'ep_zstd' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 50%] Performing build step for 'ep_curl' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 51%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 53%] Completed 'ep_zstd' [ 53%] Built target ep_zstd Scanning dependencies of target ep_tbb [ 55%] Creating directories for 'ep_tbb' [ 57%] Performing download step (download, verify and extract) for 'ep_tbb' -- ep_tbb download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log [ 58%] No patch step for 'ep_tbb' [ 60%] No update step for 'ep_tbb' [ 62%] No configure step for 'ep_tbb' [ 64%] No build step for 'ep_tbb' [ 66%] No install step for 'ep_tbb' [ 67%] Completed 'ep_tbb' [ 67%] Built target ep_tbb -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 69%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 71%] Completed 'ep_curl' [ 71%] Built target ep_curl Scanning dependencies of target ep_awssdk [ 73%] Creating directories for 'ep_awssdk' [ 75%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 76%] No update step for 'ep_awssdk' [ 78%] No patch step for 'ep_awssdk' [ 80%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 82%] Performing build step for 'ep_awssdk' -- ep_awssdk build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_awssdk-stamp/ep_awssdk-build-*.log [ 83%] Performing install step for 'ep_awssdk' -- ep_awssdk install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_awssdk-stamp/ep_awssdk-install-*.log [ 85%] Completed 'ep_awssdk' [ 85%] Built target ep_awssdk Scanning dependencies of target tiledb [ 87%] Creating directories for 'tiledb' [ 89%] No download step for 'tiledb' [ 91%] No patch step for 'tiledb' [ 92%] No update step for 'tiledb' [ 94%] Performing configure step for 'tiledb' -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB regular build. -- TileDB C++ API is not built. -- The TileDB library is compiled with stats enabled. -- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so -- The TileDB library is compiled with S3 support. -- Found AWS SDK for C++, Version: 1.7.108, Install Root:/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/install, Platform Prefix:, Platform Dependent Libraries: pthread;crypto;ssl;z;curl -- Found AWS lib: aws-cpp-sdk-s3 (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/install/lib/libaws-cpp-sdk-s3.a) -- Found AWS lib: aws-cpp-sdk-core (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/install/lib/libaws-cpp-sdk-core.a) -- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/install/lib/libaws-c-common.a) -- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/install/lib/libaws-c-event-stream.a) -- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/install/lib/libaws-checksums.a) Package libcurl was not found in the pkg-config search path. Perhaps you should add the directory containing `libcurl.pc' to the PKG_CONFIG_PATH environment variable No package 'libcurl' found Package libcurl was not found in the pkg-config search path. Perhaps you should add the directory containing `libcurl.pc' to the PKG_CONFIG_PATH environment variable No package 'libcurl' found -- Found Curl: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/install/lib/libcurl.a -- The TileDB library is compiled with HDFS support. -- Building Intel TBB: /usr/bin/make -j2 compiler=gcc tbb_build_dir=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_tbb-build tbb_build_prefix= extra_inc=big_iron.inc -- Found TBB: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_tbb-build/_release/libtbb.a -- Found TBB imported target: TBB::tbb -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Found LZ4: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/install/lib/liblz4.a -- Found Spdlog: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/src/ep_spdlog/include -- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so -- Found Zstd: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/externals/install/lib/libzstd.a -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build/tiledb [ 96%] Performing build step for 'tiledb' Scanning dependencies of target TILEDB_CORE_OBJECTS [ 1%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/array_schema.cc.o [ 1%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array/array.cc.o [ 3%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/attribute.cc.o [ 3%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/dimension.cc.o [ 4%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/domain.cc.o [ 6%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer.cc.o [ 6%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer_list.cc.o [ 8%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/const_buffer.cc.o [ 9%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/preallocated_buffer.cc.o [ 11%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/c_api/tiledb.cc.o [ 11%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/cache/lru_cache.cc.o [ 12%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/bzip_compressor.cc.o [ 14%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/dd_compressor.cc.o [ 14%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/gzip_compressor.cc.o [ 16%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/lz4_compressor.cc.o [ 17%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/rle_compressor.cc.o [ 19%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/zstd_compressor.cc.o [ 19%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption.cc.o [ 20%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_key.cc.o [ 22%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_key_validation.cc.o [ 22%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_openssl.cc.o [ 24%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_win32.cc.o [ 25%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/hdfs_filesystem.cc.o [ 27%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/posix.cc.o [ 27%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3.cc.o [ 29%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3_thread_pool_executor.cc.o [ 30%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs.cc.o [ 30%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs_file_handle.cc.o [ 32%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/win.cc.o [ 33%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bit_width_reduction_filter.cc.o [ 33%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bitshuffle_filter.cc.o [ 35%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/byteshuffle_filter.cc.o [ 37%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/compression_filter.cc.o [ 38%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/encryption_aes256gcm_filter.cc.o [ 38%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter.cc.o [ 40%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_buffer.cc.o [ 41%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_pipeline.cc.o [ 41%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_storage.cc.o [ 43%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/noop_filter.cc.o [ 45%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/positive_delta_filter.cc.o [ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/fragment/fragment_metadata.cc.o [ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/global_state.cc.o [ 48%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/libcurl_state.cc.o [ 50%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/openssl_state.cc.o [ 50%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/signal_handlers.cc.o [ 51%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/tbb_state.cc.o [ 53%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/watchdog.cc.o [ 54%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/kv/kv.cc.o [ 54%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/kv/kv_item.cc.o [ 56%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/kv/kv_iter.cc.o [ 58%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/cancelable_tasks.cc.o [ 58%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/constants.cc.o [ 59%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/logger.cc.o [ 61%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/stats.cc.o [ 62%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/status.cc.o [ 62%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/thread_pool.cc.o [ 64%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uri.cc.o [ 66%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/utils.cc.o [ 66%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uuid.cc.o [ 67%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/win_constants.cc.o [ 69%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/work_arounds.cc.o [ 69%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/query.cc.o [ 70%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/reader.cc.o [ 72%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/result_cell_slab_iter.cc.o [ 74%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/writer.cc.o [ 74%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/dense_cell_range_iter.cc.o [ 75%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rest/rest_client.cc.o [ 77%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rtree/rtree.cc.o [ 77%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/array_schema.cc.o [ 79%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/query.cc.o [ 80%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/context.cc.o [ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/config.cc.o [ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/config_iter.cc.o [ 83%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/consolidator.cc.o [ 85%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/open_array.cc.o [ 85%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/storage_manager.cc.o [ 87%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/cell_slab_iter.cc.o [ 88%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray.cc.o [ 90%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray_partitioner.cc.o [ 90%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/tile.cc.o [ 91%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/tile_io.cc.o [ 93%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/md5/md5.cc.o [ 93%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/iochain.cc.o [ 95%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/bitshuffle_core.cc.o [ 96%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle.cc.o [ 96%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-avx2.cc.o [ 98%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-generic.cc.o [100%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-sse2.cc.o [100%] Built target TILEDB_CORE_OBJECTS Scanning dependencies of target tiledb_shared [100%] Linking CXX shared library libtiledb.so [100%] Built target tiledb_shared [ 98%] No install step for 'tiledb' [100%] Completed 'tiledb' [100%] Built target tiledb Scanning dependencies of target install-tiledb [100%] Built target TILEDB_CORE_OBJECTS [100%] Built target tiledb_shared Install the project... -- Install configuration: "Release" -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/lib/libtiledb.so.1.6.0 -- Set runtime path of "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/lib/libtiledb.so.1.6.0" to "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/lib" -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/lib/libtiledb.so -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/include/tiledb/tiledb.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/include/tiledb/tiledb_enum.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/include/tiledb/tiledb_version.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/include/tiledb/tiledb_export.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/lib/cmake/TileDB/TileDBConfig.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/lib/cmake/TileDB/TileDBTargets.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/lib/cmake/TileDB/TileDBTargets-release.cmake Built target install-tiledb libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' Downloading TileDB package from 1.6.0... Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/build... CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=OFF', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0'] Copying file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/lib/libtiledb.so to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/tiledb/native/libtiledb.so libtiledb_objects: ['native/libtiledb.so'] running egg_info creating tiledb.egg-info writing tiledb.egg-info/PKG-INFO writing dependency_links to tiledb.egg-info/dependency_links.txt writing requirements to tiledb.egg-info/requires.txt writing top-level names to tiledb.egg-info/top_level.txt writing manifest file 'tiledb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'tiledb.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build/lib.linux-x86_64-3.7 creating build/lib.linux-x86_64-3.7/tiledb copying tiledb/__init__.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/version.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/highlevel.py -> build/lib.linux-x86_64-3.7/tiledb creating build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/__init__.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/all.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_libtiledb.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_util.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/common.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_dask.py -> build/lib.linux-x86_64-3.7/tiledb/tests creating build/lib.linux-x86_64-3.7/tiledb/native copying tiledb/native/libtiledb.so -> build/lib.linux-x86_64-3.7/tiledb/native running build_ext libtiledb_exists checking 'library_dirs': ['/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/lib'] libtiledb_exists found: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/lib/libtiledb.so' cythoning tiledb/libtiledb.pyx to tiledb/libtiledb.cpp building 'tiledb.libtiledb' extension creating build/temp.linux-x86_64-3.7 creating build/temp.linux-x86_64-3.7/tiledb gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.1/include/python3.7m -c tiledb/libtiledb.cpp -o build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -std=c++11 -Wno-deprecated-declarations In file included from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0, from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tiledb/libtiledb.cpp:621: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ tiledb/libtiledb.pyx: In function ‘int __pyx_pf_6tiledb_9libtiledb_9ReadQuery___init__(__pyx_obj_6tiledb_9libtiledb_ReadQuery*, __pyx_obj_6tiledb_9libtiledb_Array*, PyArrayObject*, PyObject*, tiledb_layout_t)’: tiledb/libtiledb.pyx:3920:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for i in range(nattr): ~~~~~ ^ tiledb/libtiledb.pyx:3967:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for i in range(nattr): ~~~~~ ^ tiledb/libtiledb.pyx:3993:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for i in range(nattr): ~~~~~ ^ g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.1/lib -L/home/docs/.pyenv/versions/3.7.1/lib build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-1.6.0/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/__init__.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/version.py -> build/bdist.linux-x86_64/egg/tiledb creating build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/__init__.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/all.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_libtiledb.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_util.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/common.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_dask.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/highlevel.py -> build/bdist.linux-x86_64/egg/tiledb creating build/bdist.linux-x86_64/egg/tiledb/native copying build/lib.linux-x86_64-3.7/tiledb/native/libtiledb.so -> build/bdist.linux-x86_64/egg/tiledb/native copying build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/tiledb byte-compiling build/bdist.linux-x86_64/egg/tiledb/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/version.py to version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/all.py to all.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_libtiledb.py to test_libtiledb.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_util.py to test_util.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_dask.py to test_dask.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/highlevel.py to highlevel.cpython-37.pyc creating stub loader for tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so byte-compiling build/bdist.linux-x86_64/egg/tiledb/libtiledb.py to libtiledb.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors warnings.warn('"%s" is shallow and may cause errors' % (wd.path,)) /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/tiledb/libtiledb.pxd tree = Parsing.p_module(s, pxd, full_module_name) zip_safe flag not set; analyzing archive contents... tiledb.__pycache__.__init__.cpython-37: module references __file__ tiledb.__pycache__.__init__.cpython-37: module references __path__ tiledb.__pycache__.libtiledb.cpython-37: module references __file__ tiledb.tests.__pycache__.all.cpython-37: module references __file__ creating dist creating 'dist/tiledb-0.4.4.dev3-py3.7-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing tiledb-0.4.4.dev3-py3.7-linux-x86_64.egg creating /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/tiledb-0.4.4.dev3-py3.7-linux-x86_64.egg Extracting tiledb-0.4.4.dev3-py3.7-linux-x86_64.egg to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages Adding tiledb 0.4.4.dev3 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/tiledb-0.4.4.dev3-py3.7-linux-x86_64.egg Processing dependencies for tiledb==0.4.4.dev3 Searching for wheel==0.32.3 Best match: wheel 0.32.3 Adding wheel 0.32.3 to easy-install.pth file Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages Searching for numpy==1.16.4 Best match: numpy 1.16.4 Adding numpy 1.16.4 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages Finished processing dependencies for tiledb==0.4.4.dev3 [rtd-command-info] start-time: 2019-07-24T20:07:00.226823Z, end-time: 2019-07-24T20:07:00.539682Z, duration: 0, exit-code: 0 cat doc/source/conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # -- Imports configuration ------------------------------------------------- import os import sys from os.path import abspath, join, dirname sys.path.insert(0, abspath(join(dirname(__file__)))) # -- ReadTheDocs configuration --------------------------------------------- # Special handling on ReadTheDocs builds. # Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py readthedocs = os.environ.get('READTHEDOCS', None) == 'True' rtd_version = os.environ.get('READTHEDOCS_VERSION', 'latest') rtd_version = rtd_version if rtd_version in ['stable', 'latest'] else 'stable' # -- Project information ----------------------------------------------------- project = 'TileDB-Py' copyright = '2018, TileDB, Inc.' author = 'TileDB, Inc.' # The short X.Y version version = '0.4' # The full version, including alpha/beta/rc tags release = '0.4.0' # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', ] # Mapping for linking between RTD subprojects. if readthedocs: intersphinx_mapping = { 'tiledb': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/' % rtd_version, None), 'tiledb-py': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/' % rtd_version, None), 'python': ('https://docs.python.org/', None) } # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The master toctree document. master_doc = 'index' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path . exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'friendly' # -- Options for HTML output ------------------------------------------------- html_static_path = ['_static'] html_logo = '_static/tileDB_uppercase_600_112.png' html_favicon = '_static/favicon.ico' if readthedocs: html_theme = 'default' else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # -- Options for HTMLHelp output --------------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = 'TileDB-Pydoc' # -- Options for LaTeX output ------------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'TileDB-Py.tex', 'TileDB-Py Documentation', 'TileDB, Inc.', 'manual'), ] # -- Options for manual page output ------------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'tiledb-py', 'TileDB-Py Documentation', [author], 1) ] # -- Options for Texinfo output ---------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'TileDB-Py', 'TileDB-Py Documentation', author, 'TileDB-Py', 'One line description of project.', 'Miscellaneous'), ] # -- Custom Document processing ---------------------------------------------- # Generate the sidebar automatically so that it is identical across all subprojects. # This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs import gensidebar gensidebar.generate_sidebar({'on_rtd': readthedocs, 'rtd_version': rtd_version}, 'tiledb-py') # -- Custom setup ----------------------------------------------------------- def setup(app): app.add_stylesheet('custom.css') ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for mulitple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://media.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://media.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("0.4.3", "/en/0.4.3/"), ("0.4.2", "/en/0.4.2/"), ("0.4.1", "/en/0.4.1/"), ("0.4.0", "/en/0.4.0/"), ("0.3.1", "/en/0.3.1/"), ("0.3.0", "/en/0.3.0/"), ("0.2.1", "/en/0.2.1/"), ("0.2.0", "/en/0.2.0/"), ("release-0.4.1", "/en/release-0.4.1/"), ], 'downloads': [ ], 'subprojects': [ ], 'slug': 'tiledb-inc-tiledb-py', 'name': u'TileDB-Py', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://docs.tiledb.io/projects/tiledb-py/en/stable/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/doc/source/', 'api_host': 'https://readthedocs.com', 'github_user': 'TileDB-Inc', 'github_repo': 'TileDB-Py', 'github_version': 'dev', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'dev', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'dev', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': 'd381a224', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2019-07-24T20:07:00.623349Z, end-time: 2019-07-24T20:07:06.869128Z, duration: 6, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/latest/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/latest/objects.inv' not fetchable due to : 404 Client Error: Not Found for url: https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/latest/objects.inv loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 2 source files that are out of date updating environment: 2 added, 0 changed, 0 removed reading sources... [ 50%] index reading sources... [100%] python-api looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 50%] index writing output... [100%] python-api generating indices... genindex writing additional pages... search copying static files... done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in _build/html.