Read the Docs build information
Build id: 224507
Project: tiledb-inc-tiledb-py
Version: stable
Commit: fc159734a33f5acf976405effd079a9f3fd3a36c
Date: 2019-07-17T20:16:24.125727Z
State: finished
Success: True


[rtd-command-info] start-time: 2019-07-17T20:16:24.865512Z, end-time: 2019-07-17T20:16:26.025153Z, duration: 1, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git .
Cloning into '.'...

[rtd-command-info] start-time: 2019-07-17T20:16:26.340059Z, end-time: 2019-07-17T20:16:26.357559Z, duration: 0, exit-code: 0
git checkout --force fc159734a33f5acf976405effd079a9f3fd3a36c
Note: checking out 'fc159734a33f5acf976405effd079a9f3fd3a36c'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at fc15973 Suppress deprecation warnings

[rtd-command-info] start-time: 2019-07-17T20:16:26.438938Z, end-time: 2019-07-17T20:16:26.447952Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2019-07-17T20:16:27.461092Z, end-time: 2019-07-17T20:16:31.013102Z, duration: 3, exit-code: 0
python3.7 -mvirtualenv --no-site-packages --no-download 
Using base prefix '/home/docs/.pyenv/versions/3.7.1'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2019-07-17T20:16:31.093191Z, end-time: 2019-07-17T20:16:34.793880Z, duration: 3, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip pip
Collecting pip
  Using cached https://files.pythonhosted.org/packages/5c/e0/be401c003291b56efc55aeba6a80ab790d3d4cece2778288d65323009420/pip-19.1.1-py2.py3-none-any.whl
Installing collected packages: pip
  Found existing installation: pip 18.1
    Uninstalling pip-18.1:
      Successfully uninstalled pip-18.1
Successfully installed pip-19.1.1

[rtd-command-info] start-time: 2019-07-17T20:16:35.287152Z, end-time: 2019-07-17T20:16:44.192484Z, duration: 8, exit-code: 0
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Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, sphinxcontrib-websupport, imagesize, six, pyparsing, packaging, snowballstemmer, MarkupSafe, Jinja2, chardet, certifi, urllib3, idna, requests, pytz, babel, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext
  Found existing installation: setuptools 40.6.3
    Uninstalling setuptools-40.6.3:
      Successfully uninstalled setuptools-40.6.3
Successfully installed Jinja2-2.10.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.7.0 certifi-2019.6.16 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.17.1 idna-2.8 imagesize-1.1.0 mock-1.0.1 packaging-19.0 pillow-5.4.1 pyparsing-2.4.0 pytz-2019.1 readthedocs-sphinx-ext-0.5.17 recommonmark-0.5.0 requests-2.22.0 setuptools-41.0.1 six-1.12.0 snowballstemmer-1.9.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 urllib3-1.25.3

[rtd-command-info] start-time: 2019-07-17T20:16:44.279034Z, end-time: 2019-07-17T20:16:52.867630Z, duration: 8, exit-code: 0
python -m pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip -r requirements.txt
Collecting cmake>=3.11.0 (from -r requirements.txt (line 1))
  Using cached https://files.pythonhosted.org/packages/ab/b5/d83c2f95d4be1ee9f851e91fedfc943816cfad7940b101791d1b41d00eb3/cmake-3.14.4-py3-none-manylinux2010_x86_64.whl
Collecting cython>=0.27.3 (from -r requirements.txt (line 2))
  Using cached https://files.pythonhosted.org/packages/14/43/8cfcae48235d2553c55f1f8bec21b8f5ae21b617d7d0e59023ab4b0ddfaf/Cython-0.29.12-cp37-cp37m-manylinux1_x86_64.whl
Collecting numpy>=1.7.2 (from -r requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/fc/d1/45be1144b03b6b1e24f9a924f23f66b4ad030d834ad31fb9e5581bd328af/numpy-1.16.4-cp37-cp37m-manylinux1_x86_64.whl
Requirement already satisfied: setuptools>=18.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (41.0.1)
Collecting setuptools-scm>=1.5.4 (from -r requirements.txt (line 5))
  Using cached https://files.pythonhosted.org/packages/1d/70/97966deebaeeda0b81d3cd63ba9f8ec929b838871ed17476de9d8159db3e/setuptools_scm-3.3.3-py2.py3-none-any.whl
Requirement already satisfied: wheel>=0.30.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r requirements.txt (line 6)) (0.32.3)
Collecting psutil (from -r requirements.txt (line 7))
Installing collected packages: cmake, cython, numpy, setuptools-scm, psutil
Successfully installed cmake-3.14.4 cython-0.29.12 numpy-1.16.4 psutil-5.6.3 setuptools-scm-3.3.3

[rtd-command-info] start-time: 2019-07-17T20:16:52.943659Z, end-time: 2019-07-17T20:24:47.720690Z, duration: 474, exit-code: 0
python ./setup.py install --force
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
running install
running bdist_egg
GNU Make 4.1
Built for x86_64-pc-linux-gnu
Copyright (C) 1988-2014 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
-- The C compiler identification is GNU 7.3.0
-- The CXX compiler identification is GNU 7.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Starting TileDB superbuild.
-- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so  
-- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) 
-- Adding LZ4 as an external project
-- Could NOT find Spdlog (missing: SPDLOG_INCLUDE_DIR) 
-- Adding Spdlog as an external project
-- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so
-- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) 
-- Adding Zstd as an external project
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so
-- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) 
-- Adding Curl as an external project
-- Could NOT find AWSSDK
-- Adding AWSSDK as an external project
-- Could NOT find TBB (missing: TBB_LIBRARIES TBB_INCLUDE_DIR) 
-- Adding TBB as an external project
-- Not found clang-tidy
-- Not found clang-format
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components:  doxygen dot 
-- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist
-- Configuring done
-- Generating done
-- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build
Scanning dependencies of target ep_curl
[  1%] Creating directories for 'ep_curl'
Scanning dependencies of target ep_spdlog
[  3%] Creating directories for 'ep_spdlog'
[  5%] Performing download step (download, verify and extract) for 'ep_curl'
[  7%] Performing download step (download, verify and extract) for 'ep_spdlog'
-- ep_curl download command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_curl-stamp/ep_curl-download-*.log
[  8%] No patch step for 'ep_curl'
[ 10%] No update step for 'ep_curl'
[ 12%] Performing configure step for 'ep_curl'
-- ep_spdlog download command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log
[ 14%] No patch step for 'ep_spdlog'
[ 16%] No update step for 'ep_spdlog'
[ 17%] No configure step for 'ep_spdlog'
[ 19%] No build step for 'ep_spdlog'
[ 21%] No install step for 'ep_spdlog'
[ 23%] Completed 'ep_spdlog'
[ 23%] Built target ep_spdlog
Scanning dependencies of target ep_lz4
[ 25%] Creating directories for 'ep_lz4'
[ 26%] Performing download step (download, verify and extract) for 'ep_lz4'
-- ep_lz4 download command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log
[ 28%] No patch step for 'ep_lz4'
[ 30%] No update step for 'ep_lz4'
[ 32%] Performing configure step for 'ep_lz4'
-- ep_lz4 configure command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log
[ 33%] Performing build step for 'ep_lz4'
-- ep_lz4 build command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log
[ 35%] Performing install step for 'ep_lz4'
-- ep_lz4 install command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log
[ 37%] Completed 'ep_lz4'
[ 37%] Built target ep_lz4
Scanning dependencies of target ep_zstd
[ 39%] Creating directories for 'ep_zstd'
[ 41%] Performing download step (download, verify and extract) for 'ep_zstd'
-- ep_zstd download command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log
[ 42%] No patch step for 'ep_zstd'
[ 44%] No update step for 'ep_zstd'
[ 46%] Performing configure step for 'ep_zstd'
-- ep_zstd configure command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log
[ 48%] Performing build step for 'ep_zstd'
-- ep_curl configure command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log
[ 50%] Performing build step for 'ep_curl'
-- ep_zstd build command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log
[ 51%] Performing install step for 'ep_zstd'
-- ep_zstd install command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log
[ 53%] Completed 'ep_zstd'
[ 53%] Built target ep_zstd
Scanning dependencies of target ep_tbb
[ 55%] Creating directories for 'ep_tbb'
[ 57%] Performing download step (download, verify and extract) for 'ep_tbb'
-- ep_tbb download command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_tbb-stamp/ep_tbb-download-*.log
[ 58%] No patch step for 'ep_tbb'
[ 60%] No update step for 'ep_tbb'
[ 62%] No configure step for 'ep_tbb'
[ 64%] No build step for 'ep_tbb'
[ 66%] No install step for 'ep_tbb'
[ 67%] Completed 'ep_tbb'
[ 67%] Built target ep_tbb
-- ep_curl build command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_curl-stamp/ep_curl-build-*.log
[ 69%] Performing install step for 'ep_curl'
-- ep_curl install command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_curl-stamp/ep_curl-install-*.log
[ 71%] Completed 'ep_curl'
[ 71%] Built target ep_curl
Scanning dependencies of target ep_awssdk
[ 73%] Creating directories for 'ep_awssdk'
[ 75%] Performing download step (download, verify and extract) for 'ep_awssdk'
-- ep_awssdk download command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log
[ 78%] No update step for 'ep_awssdk'
[ 78%] No patch step for 'ep_awssdk'
[ 80%] Performing configure step for 'ep_awssdk'
-- ep_awssdk configure command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log
[ 82%] Performing build step for 'ep_awssdk'
-- ep_awssdk build command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_awssdk-stamp/ep_awssdk-build-*.log
[ 83%] Performing install step for 'ep_awssdk'
-- ep_awssdk install command succeeded.  See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_awssdk-stamp/ep_awssdk-install-*.log
[ 85%] Completed 'ep_awssdk'
[ 85%] Built target ep_awssdk
Scanning dependencies of target tiledb
[ 87%] Creating directories for 'tiledb'
[ 89%] No download step for 'tiledb'
[ 91%] No patch step for 'tiledb'
[ 92%] No update step for 'tiledb'
[ 94%] Performing configure step for 'tiledb'
-- The C compiler identification is GNU 7.3.0
-- The CXX compiler identification is GNU 7.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Starting TileDB regular build.
-- TileDB C++ API is not built.
-- The TileDB library is compiled with stats enabled.
-- Found OpenSSL: /usr/lib/x86_64-linux-gnu/libssl.so /usr/lib/x86_64-linux-gnu/libcrypto.so
-- The TileDB library is compiled with S3 support.
-- Found AWS SDK for C++, Version: 1.7.108, Install Root:/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/install, Platform Prefix:, Platform Dependent Libraries: pthread;crypto;ssl;z;curl
-- Found AWS lib: aws-cpp-sdk-s3 (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/install/lib/libaws-cpp-sdk-s3.a)
-- Found AWS lib: aws-cpp-sdk-core (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/install/lib/libaws-cpp-sdk-core.a)
-- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/install/lib/libaws-c-common.a)
-- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/install/lib/libaws-c-event-stream.a)
-- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/install/lib/libaws-checksums.a)
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
-- Found Curl: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/install/lib/libcurl.a
-- The TileDB library is compiled with HDFS support.
-- Building Intel TBB: /usr/bin/make -j2 compiler=gcc tbb_build_dir=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_tbb-build tbb_build_prefix= extra_inc=big_iron.inc
-- Found TBB: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_tbb-build/_release/libtbb.a  
-- Found TBB imported target: TBB::tbb
-- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so  
-- Found LZ4: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/install/lib/liblz4.a  
-- Found Spdlog: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/src/ep_spdlog/include  
-- Found Zlib: /usr/lib/x86_64-linux-gnu/libz.so
-- Found Zstd: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/externals/install/lib/libzstd.a  
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done
-- Generating done
-- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build/tiledb
[ 96%] Performing build step for 'tiledb'
Scanning dependencies of target TILEDB_CORE_OBJECTS
[  0%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array/array.cc.o
[  1%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/array_schema.cc.o
[  3%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/attribute.cc.o
[  3%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/dimension.cc.o
[  4%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/array_schema/domain.cc.o
[  6%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer.cc.o
[  6%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/buffer_list.cc.o
[  8%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/const_buffer.cc.o
[  9%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/buffer/preallocated_buffer.cc.o
[ 11%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/c_api/tiledb.cc.o
[ 11%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/cache/lru_cache.cc.o
[ 12%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/bzip_compressor.cc.o
[ 14%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/dd_compressor.cc.o
[ 14%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/gzip_compressor.cc.o
[ 16%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/lz4_compressor.cc.o
[ 17%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/rle_compressor.cc.o
[ 19%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/compressors/zstd_compressor.cc.o
[ 19%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption.cc.o
[ 20%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_key.cc.o
[ 22%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_key_validation.cc.o
[ 22%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_openssl.cc.o
[ 24%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/encryption/encryption_win32.cc.o
[ 25%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/hdfs_filesystem.cc.o
[ 27%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/posix.cc.o
[ 27%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3.cc.o
[ 29%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/s3_thread_pool_executor.cc.o
[ 30%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs.cc.o
[ 30%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/vfs_file_handle.cc.o
[ 32%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filesystem/win.cc.o
[ 33%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bit_width_reduction_filter.cc.o
[ 33%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/bitshuffle_filter.cc.o
[ 35%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/byteshuffle_filter.cc.o
[ 37%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/compression_filter.cc.o
[ 38%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/encryption_aes256gcm_filter.cc.o
[ 38%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter.cc.o
[ 40%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_buffer.cc.o
[ 41%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_pipeline.cc.o
[ 41%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/filter_storage.cc.o
[ 43%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/noop_filter.cc.o
[ 45%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/filter/positive_delta_filter.cc.o
[ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/fragment/fragment_metadata.cc.o
[ 46%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/global_state.cc.o
[ 48%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/libcurl_state.cc.o
[ 50%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/openssl_state.cc.o
[ 50%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/signal_handlers.cc.o
[ 51%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/tbb_state.cc.o
[ 53%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/global_state/watchdog.cc.o
[ 54%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/kv/kv.cc.o
[ 54%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/kv/kv_item.cc.o
[ 56%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/kv/kv_iter.cc.o
[ 58%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/cancelable_tasks.cc.o
[ 58%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/constants.cc.o
[ 59%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/logger.cc.o
[ 61%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/stats.cc.o
[ 62%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/status.cc.o
[ 62%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/thread_pool.cc.o
[ 64%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uri.cc.o
[ 66%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/utils.cc.o
[ 66%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/uuid.cc.o
[ 67%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/win_constants.cc.o
[ 69%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/misc/work_arounds.cc.o
[ 69%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/query.cc.o
[ 70%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/reader.cc.o
[ 72%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/result_cell_slab_iter.cc.o
[ 74%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/writer.cc.o
[ 74%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/query/dense_cell_range_iter.cc.o
[ 75%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rest/rest_client.cc.o
[ 77%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/rtree/rtree.cc.o
[ 77%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/array_schema.cc.o
[ 79%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/query.cc.o
[ 80%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/context.cc.o
[ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/config.cc.o
[ 82%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/config_iter.cc.o
[ 83%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/consolidator.cc.o
[ 85%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/open_array.cc.o
[ 85%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/storage_manager/storage_manager.cc.o
[ 87%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/cell_slab_iter.cc.o
[ 88%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray.cc.o
[ 90%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/subarray/subarray_partitioner.cc.o
[ 90%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/tile.cc.o
[ 91%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/tile/tile_io.cc.o
[ 93%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/md5/md5.cc.o
[ 93%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/iochain.cc.o
[ 95%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/bitshuffle_core.cc.o
[ 96%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle.cc.o
[ 96%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-avx2.cc.o
[ 98%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-generic.cc.o
[100%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/blosc/shuffle-sse2.cc.o
[100%] Built target TILEDB_CORE_OBJECTS
Scanning dependencies of target tiledb_shared
[100%] Linking CXX shared library libtiledb.so
[100%] Built target tiledb_shared
[ 98%] No install step for 'tiledb'
[100%] Completed 'tiledb'
[100%] Built target tiledb
Scanning dependencies of target install-tiledb
[100%] Built target TILEDB_CORE_OBJECTS
[100%] Built target tiledb_shared
Install the project...
-- Install configuration: "Release"
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/lib/libtiledb.so.1.6.0
-- Set runtime path of "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/lib/libtiledb.so.1.6.0" to "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/lib"
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/lib/libtiledb.so
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/include/tiledb/tiledb.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/include/tiledb/tiledb_enum.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/include/tiledb/tiledb_version.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/include/tiledb/tiledb_export.h
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/lib/cmake/TileDB/TileDBConfig.cmake
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/lib/cmake/TileDB/TileDBTargets.cmake
-- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/lib/cmake/TileDB/TileDBTargets-release.cmake
Built target install-tiledb
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
Downloading TileDB package from dev...
Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/build...
CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=OFF', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=OFF', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev']
Copying file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/lib/libtiledb.so to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/tiledb/native/libtiledb.so
libtiledb_objects:  ['native/libtiledb.so']
running egg_info
creating tiledb.egg-info
writing tiledb.egg-info/PKG-INFO
writing dependency_links to tiledb.egg-info/dependency_links.txt
writing requirements to tiledb.egg-info/requires.txt
writing top-level names to tiledb.egg-info/top_level.txt
writing manifest file 'tiledb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'tiledb.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/tiledb
copying tiledb/__init__.py -> build/lib.linux-x86_64-3.7/tiledb
copying tiledb/version.py -> build/lib.linux-x86_64-3.7/tiledb
copying tiledb/highlevel.py -> build/lib.linux-x86_64-3.7/tiledb
creating build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/__init__.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/all.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_libtiledb.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_util.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/common.py -> build/lib.linux-x86_64-3.7/tiledb/tests
copying tiledb/tests/test_dask.py -> build/lib.linux-x86_64-3.7/tiledb/tests
creating build/lib.linux-x86_64-3.7/tiledb/native
copying tiledb/native/libtiledb.so -> build/lib.linux-x86_64-3.7/tiledb/native
running build_ext
libtiledb_exists checking 'library_dirs': ['/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/lib']
libtiledb_exists found: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/lib/libtiledb.so'
cythoning tiledb/libtiledb.pyx to tiledb/libtiledb.cpp
building 'tiledb.libtiledb' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/tiledb
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.1/include/python3.7m -c tiledb/libtiledb.cpp -o build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -std=c++11 -Wno-deprecated-declarations
In file included from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
                 from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from tiledb/libtiledb.cpp:621:
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
tiledb/libtiledb.cpp: In function ‘int __pyx_pf_6tiledb_9libtiledb_9ReadQuery___init__(__pyx_obj_6tiledb_9libtiledb_ReadQuery*, __pyx_obj_6tiledb_9libtiledb_Array*, PyArrayObject*, PyObject*, tiledb_layout_t)’:
tiledb/libtiledb.cpp:57572:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
                              ~~~~~~~~~~~^~~~~~~~~~~~
tiledb/libtiledb.cpp:57986:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
                              ~~~~~~~~~~~^~~~~~~~~~~~
tiledb/libtiledb.cpp:58324:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (__pyx_t_11 = 0; __pyx_t_11 < __pyx_t_10; __pyx_t_11+=1) {
                              ~~~~~~~~~~~^~~~~~~~~~~~
g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.1/lib -L/home/docs/.pyenv/versions/3.7.1/lib build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-dev/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/__init__.py -> build/bdist.linux-x86_64/egg/tiledb
copying build/lib.linux-x86_64-3.7/tiledb/version.py -> build/bdist.linux-x86_64/egg/tiledb
creating build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/__init__.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/all.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_libtiledb.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_util.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/common.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/tests/test_dask.py -> build/bdist.linux-x86_64/egg/tiledb/tests
copying build/lib.linux-x86_64-3.7/tiledb/highlevel.py -> build/bdist.linux-x86_64/egg/tiledb
creating build/bdist.linux-x86_64/egg/tiledb/native
copying build/lib.linux-x86_64-3.7/tiledb/native/libtiledb.so -> build/bdist.linux-x86_64/egg/tiledb/native
copying build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/tiledb
byte-compiling build/bdist.linux-x86_64/egg/tiledb/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/version.py to version.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/all.py to all.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_libtiledb.py to test_libtiledb.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_util.py to test_util.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/common.py to common.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_dask.py to test_dask.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tiledb/highlevel.py to highlevel.cpython-37.pyc
creating stub loader for tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so
byte-compiling build/bdist.linux-x86_64/egg/tiledb/libtiledb.py to libtiledb.cpython-37.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying tiledb.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable" is shallow and may cause errors
  warnings.warn('"%s" is shallow and may cause errors' % (wd.path,))
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/tiledb/libtiledb.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
zip_safe flag not set; analyzing archive contents...
tiledb.__pycache__.__init__.cpython-37: module references __file__
tiledb.__pycache__.__init__.cpython-37: module references __path__
tiledb.__pycache__.libtiledb.cpython-37: module references __file__
tiledb.tests.__pycache__.all.cpython-37: module references __file__
creating dist
creating 'dist/tiledb-0.4.3-py3.7-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing tiledb-0.4.3-py3.7-linux-x86_64.egg
creating /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.4.3-py3.7-linux-x86_64.egg
Extracting tiledb-0.4.3-py3.7-linux-x86_64.egg to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages
Adding tiledb 0.4.3 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.4.3-py3.7-linux-x86_64.egg
Processing dependencies for tiledb==0.4.3
Searching for wheel==0.32.3
Best match: wheel 0.32.3
Adding wheel 0.32.3 to easy-install.pth file
Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages
Searching for numpy==1.16.4
Best match: numpy 1.16.4
Adding numpy 1.16.4 to easy-install.pth file
Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin
Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin
Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages
Finished processing dependencies for tiledb==0.4.3

[rtd-command-info] start-time: 2019-07-17T20:24:48.844206Z, end-time: 2019-07-17T20:24:49.156104Z, duration: 0, exit-code: 0
cat doc/source/conf.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#

# -- Imports configuration -------------------------------------------------

import os
import sys
from os.path import abspath, join, dirname

sys.path.insert(0, abspath(join(dirname(__file__))))

# -- ReadTheDocs configuration ---------------------------------------------

# Special handling on ReadTheDocs builds.
# Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py
readthedocs = os.environ.get('READTHEDOCS', None) == 'True'
rtd_version = os.environ.get('READTHEDOCS_VERSION', 'latest')
rtd_version = rtd_version if rtd_version in ['stable', 'latest'] else 'stable'

# -- Project information -----------------------------------------------------

project = 'TileDB-Py'
copyright = '2018, TileDB, Inc.'
author = 'TileDB, Inc.'

# The short X.Y version
version = '0.4'
# The full version, including alpha/beta/rc tags
release = '0.4.0'


# -- General configuration ---------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.doctest',
    'sphinx.ext.intersphinx',
]

# Mapping for linking between RTD subprojects.
if readthedocs:
    intersphinx_mapping = {
        'tiledb': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/' % rtd_version, None),
        'tiledb-py': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/' % rtd_version, None),
        'python': ('https://docs.python.org/', None)
    }

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The master toctree document.
master_doc = 'index'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This pattern also affects html_static_path and html_extra_path .
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'friendly'


# -- Options for HTML output -------------------------------------------------

html_static_path = ['_static']
html_logo = '_static/tileDB_uppercase_600_112.png'
html_favicon = '_static/favicon.ico'

if readthedocs:
    html_theme = 'default'
else:
    import sphinx_rtd_theme
    html_theme = 'sphinx_rtd_theme'
    html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# -- Options for HTMLHelp output ---------------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = 'TileDB-Pydoc'


# -- Options for LaTeX output ------------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'TileDB-Py.tex', 'TileDB-Py Documentation',
     'TileDB, Inc.', 'manual'),
]


# -- Options for manual page output ------------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'tiledb-py', 'TileDB-Py Documentation',
     [author], 1)
]


# -- Options for Texinfo output ----------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'TileDB-Py', 'TileDB-Py Documentation',
     author, 'TileDB-Py', 'One line description of project.',
     'Miscellaneous'),
]

# -- Custom Document processing ----------------------------------------------

# Generate the sidebar automatically so that it is identical across all subprojects.
# This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs
import gensidebar
gensidebar.generate_sidebar({'on_rtd': readthedocs, 'rtd_version': rtd_version}, 'tiledb-py')

# -- Custom setup -----------------------------------------------------------

def setup(app):
    app.add_stylesheet('custom.css')




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for mulitple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://media.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "stable",
    'version_slug': "stable",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://media.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("0.4.3", "/en/0.4.3/"),
    ("0.4.2", "/en/0.4.2/"),
    ("0.4.1", "/en/0.4.1/"),
    ("0.4.0", "/en/0.4.0/"),
    ("0.3.1", "/en/0.3.1/"),
    ("0.3.0", "/en/0.3.0/"),
    ("0.2.1", "/en/0.2.1/"),
    ("0.2.0", "/en/0.2.0/"),
    ("release-0.4.1", "/en/release-0.4.1/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
    ],
    'slug': 'tiledb-inc-tiledb-py',
    'name': u'TileDB-Py',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://docs.tiledb.io/projects/tiledb-py/en/stable/',
    'analytics_code': '',
    'single_version': False,
    'conf_py_path': '/doc/source/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'TileDB-Inc',
    'github_repo': 'TileDB-Py',
    'github_version': 'fc159734a33f5acf976405effd079a9f3fd3a36c',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'fc159734a33f5acf976405effd079a9f3fd3a36c',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'fc159734a33f5acf976405effd079a9f3fd3a36c',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': 'fc159734',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

[rtd-command-info] start-time: 2019-07-17T20:24:49.241387Z, end-time: 2019-07-17T20:24:54.973968Z, duration: 5, exit-code: 0
python sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.8.5
loading translations [en]... done
making output directory...
loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/en/stable/objects.inv...
loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv' not fetchable due to <class 'requests.exceptions.HTTPError'>: 404 Client Error: Not Found for url: https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv
loading intersphinx inventory from https://docs.python.org/objects.inv...
intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 2 source files that are out of date
updating environment: 2 added, 0 changed, 0 removed
reading sources... [ 50%] index
reading sources... [100%] python-api

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 50%] index
writing output... [100%] python-api

generating indices... genindex
writing additional pages... search
copying static files... done
copying readthedocs static files... done
copying searchtools... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 1 warning.

The HTML pages are in _build/html.