Read the Docs build information Build id: 217319 Project: d-wave-systems-penaltymodel Version: latest Commit: e9075485ec642f608f88a8bbfe061a51c2befbfe Date: 2019-06-18T20:54:00.161309Z State: finished Success: True [rtd-command-info] start-time: 2019-06-18T20:54:00.576600Z, end-time: 2019-06-18T20:54:01.000298Z, duration: 0, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/dwavesystems/penaltymodel.git . Cloning into '.'... [rtd-command-info] start-time: 2019-06-18T20:54:01.277463Z, end-time: 2019-06-18T20:54:01.289565Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at e907548 Merge pull request #94 from arcondello/feature/docs-direct-links [rtd-command-info] start-time: 2019-06-18T20:54:01.368743Z, end-time: 2019-06-18T20:54:01.377108Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-06-18T20:54:02.429221Z, end-time: 2019-06-18T20:54:05.833290Z, duration: 3, exit-code: 0 python3.7 -mvirtualenv --no-site-packages --no-download Using base prefix '/home/docs/.pyenv/versions/3.7.1' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2019-06-18T20:54:05.898710Z, end-time: 2019-06-18T20:54:08.635289Z, duration: 2, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/.cache/pip pip Collecting pip Downloading https://files.pythonhosted.org/packages/5c/e0/be401c003291b56efc55aeba6a80ab790d3d4cece2778288d65323009420/pip-19.1.1-py2.py3-none-any.whl (1.4MB) Installing collected packages: pip Found existing installation: pip 18.1 Uninstalling pip-18.1: Successfully uninstalled pip-18.1 Successfully installed pip-19.1.1 [rtd-command-info] start-time: 2019-06-18T20:54:08.703426Z, end-time: 2019-06-18T20:54:19.568332Z, duration: 10, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/.cache/pip Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<0.6 Collecting Pygments==2.3.1 Downloading https://files.pythonhosted.org/packages/13/e5/6d710c9cf96c31ac82657bcfb441df328b22df8564d58d0c4cd62612674c/Pygments-2.3.1-py2.py3-none-any.whl (849kB) Collecting setuptools==41.0.1 Downloading https://files.pythonhosted.org/packages/ec/51/f45cea425fd5cb0b0380f5b0f048ebc1da5b417e48d304838c02d6288a1e/setuptools-41.0.1-py2.py3-none-any.whl (575kB) Collecting docutils==0.14 Downloading https://files.pythonhosted.org/packages/36/fa/08e9e6e0e3cbd1d362c3bbee8d01d0aedb2155c4ac112b19ef3cae8eed8d/docutils-0.14-py3-none-any.whl (543kB) Collecting mock==1.0.1 Downloading https://files.pythonhosted.org/packages/a2/52/7edcd94f0afb721a2d559a5b9aae8af4f8f2c79bc63fdbe8a8a6c9b23bbe/mock-1.0.1.tar.gz (818kB) Collecting pillow==5.4.1 Downloading https://files.pythonhosted.org/packages/ae/2a/0a0ab2833e5270664fb5fae590717f867ac6319b124160c09f1d3291de28/Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading https://files.pythonhosted.org/packages/10/ad/00b090d23a222943eb0eda509720a404f531a439e803f6538f35136cae9e/alabaster-0.7.12-py2.py3-none-any.whl Collecting commonmark==0.8.1 Downloading https://files.pythonhosted.org/packages/ab/ca/439c88039583a29564a0043186875258e9a4f041fb5c422cd387b8e10175/commonmark-0.8.1-py2.py3-none-any.whl (47kB) Collecting recommonmark==0.5.0 Downloading https://files.pythonhosted.org/packages/9b/3d/92ea48401622510e57b4bdaa74dc9db2fb9e9e892324b48f9c02d716a93a/recommonmark-0.5.0-py2.py3-none-any.whl Collecting sphinx<2 Downloading https://files.pythonhosted.org/packages/7d/66/a4af242b4348b729b9d46ce5db23943ce9bca7da9bbe2ece60dc27f26420/Sphinx-1.8.5-py2.py3-none-any.whl (3.1MB) Collecting sphinx-rtd-theme<0.5 Downloading https://files.pythonhosted.org/packages/60/b4/4df37087a1d36755e3a3bfd2a30263f358d2dea21938240fa02313d45f51/sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4MB) Collecting readthedocs-sphinx-ext<0.6 Downloading https://files.pythonhosted.org/packages/d1/f3/68de6af559ae681921a7b676a86c360454de67f3c8bd5327ae9352897ef4/readthedocs_sphinx_ext-0.5.17-py2.py3-none-any.whl Collecting future (from commonmark==0.8.1) Downloading https://files.pythonhosted.org/packages/90/52/e20466b85000a181e1e144fd8305caf2cf475e2f9674e797b222f8105f5f/future-0.17.1.tar.gz (829kB) Collecting Jinja2>=2.3 (from sphinx<2) Downloading https://files.pythonhosted.org/packages/1d/e7/fd8b501e7a6dfe492a433deb7b9d833d39ca74916fa8bc63dd1a4947a671/Jinja2-2.10.1-py2.py3-none-any.whl (124kB) Collecting imagesize (from sphinx<2) Downloading https://files.pythonhosted.org/packages/fc/b6/aef66b4c52a6ad6ac18cf6ebc5731ed06d8c9ae4d3b2d9951f261150be67/imagesize-1.1.0-py2.py3-none-any.whl Collecting requests>=2.0.0 (from sphinx<2) Downloading https://files.pythonhosted.org/packages/51/bd/23c926cd341ea6b7dd0b2a00aba99ae0f828be89d72b2190f27c11d4b7fb/requests-2.22.0-py2.py3-none-any.whl (57kB) Collecting sphinxcontrib-websupport (from sphinx<2) Downloading https://files.pythonhosted.org/packages/2a/59/d64bda9b7480a84a3569be4dde267c0f6675b255ba63b4c8e84469940457/sphinxcontrib_websupport-1.1.2-py2.py3-none-any.whl Collecting snowballstemmer>=1.1 (from sphinx<2) Downloading https://files.pythonhosted.org/packages/d4/6c/8a935e2c7b54a37714656d753e4187ee0631988184ed50c0cf6476858566/snowballstemmer-1.2.1-py2.py3-none-any.whl (64kB) Collecting six>=1.5 (from sphinx<2) Downloading https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl Collecting babel!=2.0,>=1.3 (from sphinx<2) Downloading https://files.pythonhosted.org/packages/2c/60/f2af68eb046c5de5b1fe6dd4743bf42c074f7141fe7b2737d3061533b093/Babel-2.7.0-py2.py3-none-any.whl (8.4MB) Collecting packaging (from sphinx<2) Downloading https://files.pythonhosted.org/packages/91/32/58bc30e646e55eab8b21abf89e353f59c0cc02c417e42929f4a9546e1b1d/packaging-19.0-py2.py3-none-any.whl Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx<2) Downloading https://files.pythonhosted.org/packages/98/7b/ff284bd8c80654e471b769062a9b43cc5d03e7a615048d96f4619df8d420/MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx<2) Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx<2) Downloading https://files.pythonhosted.org/packages/69/1b/b853c7a9d4f6a6d00749e94eb6f3a041e342a885b87340b79c1ef73e3a78/certifi-2019.6.16-py2.py3-none-any.whl (157kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 (from requests>=2.0.0->sphinx<2) Downloading https://files.pythonhosted.org/packages/e6/60/247f23a7121ae632d62811ba7f273d0e58972d75e58a94d329d51550a47d/urllib3-1.25.3-py2.py3-none-any.whl (150kB) Collecting idna<2.9,>=2.5 (from requests>=2.0.0->sphinx<2) Downloading https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl (58kB) Collecting pytz>=2015.7 (from babel!=2.0,>=1.3->sphinx<2) Downloading https://files.pythonhosted.org/packages/3d/73/fe30c2daaaa0713420d0382b16fbb761409f532c56bdcc514bf7b6262bb6/pytz-2019.1-py2.py3-none-any.whl (510kB) Collecting pyparsing>=2.0.2 (from packaging->sphinx<2) Downloading https://files.pythonhosted.org/packages/dd/d9/3ec19e966301a6e25769976999bd7bbe552016f0d32b577dc9d63d2e0c49/pyparsing-2.4.0-py2.py3-none-any.whl (62kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/.cache/pip/wheels/7e/72/92/744b532c779242b57aab4bcba80c312b30c069bbd60025e7e6 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/.cache/pip/wheels/0c/61/d2/d6b7317325828fbb39ee6ad559dbe4664d0896da4721bf379e Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, imagesize, chardet, certifi, urllib3, idna, requests, sphinxcontrib-websupport, snowballstemmer, six, pytz, babel, pyparsing, packaging, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Found existing installation: setuptools 40.6.3 Uninstalling setuptools-40.6.3: Successfully uninstalled setuptools-40.6.3 Successfully installed Jinja2-2.10.1 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.7.0 certifi-2019.6.16 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.17.1 idna-2.8 imagesize-1.1.0 mock-1.0.1 packaging-19.0 pillow-5.4.1 pyparsing-2.4.0 pytz-2019.1 readthedocs-sphinx-ext-0.5.17 recommonmark-0.5.0 requests-2.22.0 setuptools-41.0.1 six-1.12.0 snowballstemmer-1.2.1 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.2 urllib3-1.25.3 [rtd-command-info] start-time: 2019-06-18T20:54:19.633890Z, end-time: 2019-06-18T20:54:37.775051Z, duration: 18, exit-code: 0 python -m pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/.cache/pip -r requirements.txt Collecting dimod==0.8.1 (from -r penaltymodel_core/requirements.txt (line 1)) Downloading https://files.pythonhosted.org/packages/fd/b7/a170a0bdcf499c70579fc200fa36deec1b850d67da06ec2bfad8a3cf38c6/dimod-0.8.1-cp37-cp37m-manylinux1_x86_64.whl (789kB) Collecting six==1.11.0 (from -r penaltymodel_core/requirements.txt (line 2)) Downloading https://files.pythonhosted.org/packages/67/4b/141a581104b1f6397bfa78ac9d43d8ad29a7ca43ea90a2d863fe3056e86a/six-1.11.0-py2.py3-none-any.whl Collecting networkx==2.0 (from -r penaltymodel_core/requirements.txt (line 3)) Downloading https://files.pythonhosted.org/packages/73/58/0add7d81cf64958f7a062aa287237364eb0a0959bf7a817f708d5c25d043/networkx-2.0.zip (1.5MB) Collecting homebase==1.0.0 (from -r penaltymodel_cache/requirements.txt (line 1)) Downloading https://files.pythonhosted.org/packages/30/2d/67f743b64c78a330f4e0b6cef72c82aa57bf1951a36e304d1293478ae5bc/homebase-1.0.0-py2.py3-none-any.whl Collecting dwave_networkx==0.6.0 (from -r penaltymodel_maxgap/requirements.txt (line 1)) Downloading https://files.pythonhosted.org/packages/d8/38/496fc619f0024d71cf351a9d2ee70ec5dbad2c17aaeb1f4f47120710b6eb/dwave_networkx-0.6.0-py2.py3-none-any.whl Collecting pysmt==0.7.0 (from -r penaltymodel_maxgap/requirements.txt (line 2)) Downloading https://files.pythonhosted.org/packages/a2/5c/26cd1faa0d1f96dc0cddd299646eeff5dd631fd176a0c7bc7ca63e547865/PySMT-0.7.0.tar.gz (217kB) Collecting ortools<7.0.0,>=6.6.4659 (from -r penaltymodel_mip/requirements.txt (line 3)) Downloading https://files.pythonhosted.org/packages/5b/a0/2b5922486ee838436b7da6181d883a4e749193009d623f2c9f44d7c8a7e9/ortools-6.10.6025-cp37-cp37m-manylinux1_x86_64.whl (23.7MB) Collecting dwavebinarycsp==0.0.10 (from -r penaltymodel_lp/requirements.txt (line 2)) Downloading https://files.pythonhosted.org/packages/75/ce/1d3a2db55982db08c6c80f18f4639c2746b7ec5357db9d2506df9da7e98a/dwavebinarycsp-0.0.10-py2.py3-none-any.whl Collecting numpy==1.15.3 (from -r penaltymodel_lp/requirements.txt (line 3)) Downloading https://files.pythonhosted.org/packages/f2/1f/a05544224706463a1c28589db5900247c7e85a077a0d254e7db012fbb008/numpy-1.15.3-cp37-cp37m-manylinux1_x86_64.whl (13.8MB) Collecting scipy==1.1.0 (from -r penaltymodel_lp/requirements.txt (line 4)) Downloading https://files.pythonhosted.org/packages/40/de/0c22c6754370ba6b1fa8e53bd6e514d4a41a181125d405a501c215cbdbd6/scipy-1.1.0-cp37-cp37m-manylinux1_x86_64.whl (31.2MB) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 11)) (1.8.5) Requirement already satisfied: sphinx_rtd_theme in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 12)) (0.4.3) Collecting coverage (from -r requirements.txt (line 14)) Downloading https://files.pythonhosted.org/packages/b4/6a/8e2918c56682739cf177a7358929fed427d3982cc649e859b7a2d5c7daea/coverage-4.5.3-cp37-cp37m-manylinux1_x86_64.whl (204kB) Collecting codecov (from -r requirements.txt (line 15)) Downloading https://files.pythonhosted.org/packages/8b/28/4c1950a61c3c5786f0f34d643d0d28ec832433c9a7c0bd157690d4eb1d5f/codecov-2.0.15-py2.py3-none-any.whl Collecting jsonschema<3.0.0,>=2.6.0 (from dimod==0.8.1->-r penaltymodel_core/requirements.txt (line 1)) Downloading https://files.pythonhosted.org/packages/77/de/47e35a97b2b05c2fadbec67d44cfcdcd09b8086951b331d82de90d2912da/jsonschema-2.6.0-py2.py3-none-any.whl Collecting decorator>=4.1.0 (from networkx==2.0->-r penaltymodel_core/requirements.txt (line 3)) Downloading https://files.pythonhosted.org/packages/5f/88/0075e461560a1e750a0dcbf77f1d9de775028c37a19a346a6c565a257399/decorator-4.4.0-py2.py3-none-any.whl Collecting enum34==1.1.6 (from homebase==1.0.0->-r penaltymodel_cache/requirements.txt (line 1)) Downloading https://files.pythonhosted.org/packages/af/42/cb9355df32c69b553e72a2e28daee25d1611d2c0d9c272aa1d34204205b2/enum34-1.1.6-py3-none-any.whl Collecting protobuf>=3.6.1 (from ortools<7.0.0,>=6.6.4659->-r penaltymodel_mip/requirements.txt (line 3)) Downloading https://files.pythonhosted.org/packages/ce/86/9f6123c4c6f481862f286dbe13aa2e97bdedd7662f5fc3033c1a41f32f88/protobuf-3.8.0-cp37-cp37m-manylinux1_x86_64.whl (1.2MB) Collecting penaltymodel<0.16.0,>=0.15.0 (from dwavebinarycsp==0.0.10->-r penaltymodel_lp/requirements.txt (line 2)) Downloading https://files.pythonhosted.org/packages/7a/2d/fe951555fb3c672e678fd93edbcfb35e74fe2a7bfde2c2c0102b0a36ab79/penaltymodel-0.15.4-py2.py3-none-any.whl Collecting penaltymodel-cache<0.4.0,>=0.3.2 (from dwavebinarycsp==0.0.10->-r penaltymodel_lp/requirements.txt (line 2)) Downloading https://files.pythonhosted.org/packages/76/d8/429377e301c27daa20294b255edbca731d9b703ba57f045f06a838a76703/penaltymodel_cache-0.3.3-py2.py3-none-any.whl Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 11)) (1.1.2) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 11)) (2.3.1) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 11)) (1.2.1) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 11)) (41.0.1) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 11)) (2.7.0) Requirement already satisfied: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 11)) (0.14) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 11)) (19.0) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 11)) (2.10.1) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 11)) (2.22.0) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 11)) (0.7.12) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 11)) (1.1.0) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r requirements.txt (line 11)) (2019.1) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from packaging->sphinx->-r requirements.txt (line 11)) (2.4.0) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx->-r requirements.txt (line 11)) (1.1.1) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 11)) (1.25.3) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 11)) (3.0.4) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 11)) (2019.6.16) Requirement already satisfied: idna<2.9,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 11)) (2.8) Building wheels for collected packages: networkx, pysmt Building wheel for networkx (setup.py): started Building wheel for networkx (setup.py): finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/.cache/pip/wheels/87/09/8b/4bbd744c97888c475862097465876a0f8fd0a5f35fd24fca4a Building wheel for pysmt (setup.py): started Building wheel for pysmt (setup.py): finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/.cache/pip/wheels/eb/ac/9a/d6013815de71254ef06724cd046f5685a156fb84bd8f343c44 Successfully built networkx pysmt Installing collected packages: jsonschema, numpy, six, dimod, decorator, networkx, enum34, homebase, dwave-networkx, pysmt, protobuf, ortools, penaltymodel, penaltymodel-cache, dwavebinarycsp, scipy, coverage, codecov Found existing installation: six 1.12.0 Uninstalling six-1.12.0: Successfully uninstalled six-1.12.0 Successfully installed codecov-2.0.15 coverage-4.5.3 decorator-4.4.0 dimod-0.8.1 dwave-networkx-0.6.0 dwavebinarycsp-0.0.10 enum34-1.1.6 homebase-1.0.0 jsonschema-2.6.0 networkx-2.0 numpy-1.15.3 ortools-6.10.6025 penaltymodel-0.15.4 penaltymodel-cache-0.3.3 protobuf-3.8.0 pysmt-0.7.0 scipy-1.1.0 six-1.11.0 [rtd-command-info] start-time: 2019-06-18T20:54:38.381328Z, end-time: 2019-06-18T20:54:38.700916Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # import os import sys # sys.path.insert(0, os.path.abspath('.')) home_path = os.path.dirname(os.path.dirname(os.path.abspath(__file__))) core_path = os.path.join(home_path, 'penaltymodel_core') cache_path = os.path.join(home_path, 'penaltymodel_cache') maxgap_path = os.path.join(home_path, 'penaltymodel_maxgap') mip_path = os.path.join(home_path, 'penaltymodel_mip') lp_path = os.path.join(home_path, 'penaltymodel_lp') sys.path.insert(0, home_path) sys.path.insert(0, core_path) sys.path.insert(0, cache_path) sys.path.insert(0, maxgap_path) sys.path.insert(0, mip_path) sys.path.insert(0, lp_path) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autosummary', 'sphinx.ext.autodoc', 'sphinx.ext.coverage', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', 'sphinx.ext.mathjax', 'sphinx.ext.napoleon', 'sphinx.ext.todo', 'sphinx.ext.viewcode', ] autosummary_generate = True # Add any paths that contain templates here, relative to this directory. # templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The master toctree document. master_doc = 'index' # General information about the project. project = u'Penalty Model' copyright = u'2018, D-Wave Systems Inc' author = u'D-Wave Systems Inc' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # import penaltymo # # The short X.Y version. # version = PROJECTNAME.package_info.__version__ # # The full version, including alpha/beta/rc tags. # release = PROJECTNAME.package_info.__version__ # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None add_module_names = False # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True modindex_common_prefix = ['penaltymodel.'] doctest_global_setup = \ """ import penaltymodel.core as pm import penaltymodel.cache as pmc import penaltymodel.maxgap as maxgap import penaltymodel.mip as mip import penaltymodel.lp as lp """ # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. htmlhelp_basename = 'penaltymodeldoc' def setup(app): app.add_stylesheet('cookie_notice.css') app.add_javascript('cookie_notice.js') # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'penaltymodel.tex', u'penaltymodel Documentation', u'D-Wave Systems Inc', 'manual'), ] # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'projectname', u'penaltymodel Documentation', [author], 1) ] # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'penaltymodel', u'penaltymodel Documentation', author, 'penaltymodel', 'One line description of project.', 'Miscellaneous'), ] # -- Options for Epub output ---------------------------------------------- # Bibliographic Dublin Core info. epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright # The unique identifier of the text. This can be a ISBN number # or the project homepage. # # epub_identifier = '' # A unique identification for the text. # # epub_uid = '' # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # Configuration for intersphinx. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'dimod': ('https://docs.ocean.dwavesys.com/projects/dimod/en/latest/', None), 'binarycsp': ('https://docs.ocean.dwavesys.com/projects/binarycsp/en/latest/', None), 'cloud-client': ('https://docs.ocean.dwavesys.com/projects/cloud-client/en/latest/', None), 'neal': ('https://docs.ocean.dwavesys.com/projects/neal/en/latest/', None), 'networkx': ('https://docs.ocean.dwavesys.com/projects/dwave-networkx/en/latest/', None), 'system': ('https://docs.ocean.dwavesys.com/projects/system/en/latest/', None), 'penaltymodel': ('https://docs.ocean.dwavesys.com/projects/penaltymodel/en/latest/', None), 'minorminer': ('https://docs.ocean.dwavesys.com/projects/minorminer/en/latest/', None), 'qbsolv': ('https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/', None), 'oceandocs': ('https://docs.ocean.dwavesys.com/en/latest/', None), 'sysdocs_gettingstarted': ('https://docs.dwavesys.com/docs/latest/', None)} ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for mulitple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://media.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://media.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//readthedocs.com/projects/d-wave-systems-penaltymodel/downloads/pdf/latest/"), ("html", "//readthedocs.com/projects/d-wave-systems-penaltymodel/downloads/htmlzip/latest/"), ("epub", "//readthedocs.com/projects/d-wave-systems-penaltymodel/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'd-wave-systems-penaltymodel', 'name': u'penaltymodel', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://docs.ocean.dwavesys.com/projects/penaltymodel/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'dwavesystems', 'github_repo': 'penaltymodel', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': 'e9075485', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' [rtd-command-info] start-time: 2019-06-18T20:54:38.770410Z, end-time: 2019-06-18T20:54:43.774923Z, duration: 5, exit-code: 0 python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... [autosummary] generating autosummary for: index.rst, installation.rst, license.rst, packages/cache/cache.rst, packages/cache/database.rst, packages/cache/database_schema.rst, packages/cache/index.rst, packages/cache/interface.rst, packages/cache/license.rst, packages/core/index.rst, ..., packages/lp/interface.rst, packages/lp/license.rst, packages/maxgap/generation.rst, packages/maxgap/index.rst, packages/maxgap/interface.rst, packages/maxgap/license.rst, packages/mip/generation.rst, packages/mip/index.rst, packages/mip/interface.rst, packages/mip/license.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/dimod/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/binarycsp/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/cloud-client/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/neal/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/dwave-networkx/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/system/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/penaltymodel/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/minorminer/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 26 source files that are out of date updating environment: 26 added, 0 changed, 0 removed reading sources... [ 3%] index reading sources... [ 7%] installation reading sources... [ 11%] license reading sources... [ 15%] packages/cache/cache reading sources... [ 19%] packages/cache/database reading sources... [ 23%] packages/cache/database_schema reading sources... [ 26%] packages/cache/index reading sources... [ 30%] packages/cache/interface reading sources... [ 34%] packages/cache/license reading sources... [ 38%] packages/core/index reading sources... [ 42%] packages/core/license reading sources... [ 46%] packages/core/penaltymodel_code reading sources... [ 50%] packages/core/using_factories reading sources... [ 53%] packages/index reading sources... [ 57%] packages/lp/generation reading sources... [ 61%] packages/lp/index reading sources... [ 65%] packages/lp/interface reading sources... [ 69%] packages/lp/license reading sources... [ 73%] packages/maxgap/generation reading sources... [ 76%] packages/maxgap/index reading sources... [ 80%] packages/maxgap/interface reading sources... [ 84%] packages/maxgap/license reading sources... [ 88%] packages/mip/generation reading sources... [ 92%] packages/mip/index reading sources... [ 96%] packages/mip/interface reading sources... [100%] packages/mip/license looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 3%] index writing output... [ 7%] installation writing output... [ 11%] license writing output... [ 15%] packages/cache/cache writing output... [ 19%] packages/cache/database writing output... [ 23%] packages/cache/database_schema writing output... [ 26%] packages/cache/index writing output... [ 30%] packages/cache/interface writing output... [ 34%] packages/cache/license writing output... [ 38%] packages/core/index writing output... [ 42%] packages/core/license writing output... [ 46%] packages/core/penaltymodel_code writing output... [ 50%] packages/core/using_factories writing output... [ 53%] packages/index writing output... [ 57%] packages/lp/generation writing output... [ 61%] packages/lp/index writing output... [ 65%] packages/lp/interface writing output... [ 69%] packages/lp/license writing output... [ 73%] packages/maxgap/generation writing output... [ 76%] packages/maxgap/index writing output... [ 80%] packages/maxgap/interface writing output... [ 84%] packages/maxgap/license writing output... [ 88%] packages/mip/generation writing output... [ 92%] packages/mip/index writing output... [ 96%] packages/mip/interface writing output... [100%] packages/mip/license generating indices... genindex py-modindex highlighting module code... [ 7%] penaltymodel.cache.cache_manager highlighting module code... [ 15%] penaltymodel.cache.database_manager highlighting module code... [ 23%] penaltymodel.cache.interface highlighting module code... [ 30%] penaltymodel.core.classes.penaltymodel highlighting module code... [ 38%] penaltymodel.core.classes.specification highlighting module code... [ 46%] penaltymodel.core.exceptions highlighting module code... [ 53%] penaltymodel.core.interface highlighting module code... [ 61%] penaltymodel.lp.generation highlighting module code... [ 69%] penaltymodel.lp.interface highlighting module code... [ 76%] penaltymodel.maxgap.generation highlighting module code... [ 84%] penaltymodel.maxgap.interface highlighting module code... [ 92%] penaltymodel.mip.generation highlighting module code... [100%] penaltymodel.mip.interface writing additional pages... search copying static files... done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded. The HTML pages are in _build/html. [rtd-command-info] start-time: 2019-06-18T20:54:43.879902Z, end-time: 2019-06-18T20:54:47.809054Z, duration: 3, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... [autosummary] generating autosummary for: index.rst, installation.rst, license.rst, packages/cache/cache.rst, packages/cache/database.rst, packages/cache/database_schema.rst, packages/cache/index.rst, packages/cache/interface.rst, packages/cache/license.rst, packages/core/index.rst, ..., packages/lp/interface.rst, packages/lp/license.rst, packages/maxgap/generation.rst, packages/maxgap/index.rst, packages/maxgap/interface.rst, packages/maxgap/license.rst, packages/mip/generation.rst, packages/mip/index.rst, packages/mip/interface.rst, packages/mip/license.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/dimod/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/binarycsp/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/cloud-client/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/neal/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/dwave-networkx/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/system/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/penaltymodel/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/minorminer/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 26 added, 0 changed, 0 removed reading sources... [ 3%] index reading sources... [ 7%] installation reading sources... [ 11%] license reading sources... [ 15%] packages/cache/cache reading sources... [ 19%] packages/cache/database reading sources... [ 23%] packages/cache/database_schema reading sources... [ 26%] packages/cache/index reading sources... [ 30%] packages/cache/interface reading sources... [ 34%] packages/cache/license reading sources... [ 38%] packages/core/index reading sources... [ 42%] packages/core/license reading sources... [ 46%] packages/core/penaltymodel_code reading sources... [ 50%] packages/core/using_factories reading sources... [ 53%] packages/index reading sources... [ 57%] packages/lp/generation reading sources... [ 61%] packages/lp/index reading sources... [ 65%] packages/lp/interface reading sources... [ 69%] packages/lp/license reading sources... [ 73%] packages/maxgap/generation reading sources... [ 76%] packages/maxgap/index reading sources... [ 80%] packages/maxgap/interface reading sources... [ 84%] packages/maxgap/license reading sources... [ 88%] packages/mip/generation reading sources... [ 92%] packages/mip/index reading sources... [ 96%] packages/mip/interface reading sources... [100%] packages/mip/license looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... packages/index packages/core/index packages/core/penaltymodel_code packages/core/using_factories packages/core/license packages/cache/index packages/cache/interface packages/cache/database packages/cache/database_schema packages/cache/cache packages/cache/license packages/maxgap/index packages/maxgap/interface packages/maxgap/generation packages/maxgap/license packages/mip/index packages/mip/interface packages/mip/generation packages/mip/license packages/lp/index packages/lp/interface packages/lp/generation packages/lp/license installation license writing... done writing additional files... copying static files... done copying readthedocs static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2019-06-18T20:54:47.906442Z, end-time: 2019-06-18T20:54:51.707890Z, duration: 3, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... [autosummary] generating autosummary for: index.rst, installation.rst, license.rst, packages/cache/cache.rst, packages/cache/database.rst, packages/cache/database_schema.rst, packages/cache/index.rst, packages/cache/interface.rst, packages/cache/license.rst, packages/core/index.rst, ..., packages/lp/interface.rst, packages/lp/license.rst, packages/maxgap/generation.rst, packages/maxgap/index.rst, packages/maxgap/interface.rst, packages/maxgap/license.rst, packages/mip/generation.rst, packages/mip/index.rst, packages/mip/interface.rst, packages/mip/license.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/dimod/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/binarycsp/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/cloud-client/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/neal/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/dwave-networkx/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/system/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/penaltymodel/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/minorminer/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 26 added, 0 changed, 0 removed reading sources... [ 3%] index reading sources... [ 7%] installation reading sources... [ 11%] license reading sources... [ 15%] packages/cache/cache reading sources... [ 19%] packages/cache/database reading sources... [ 23%] packages/cache/database_schema reading sources... [ 26%] packages/cache/index reading sources... [ 30%] packages/cache/interface reading sources... [ 34%] packages/cache/license reading sources... [ 38%] packages/core/index reading sources... [ 42%] packages/core/license reading sources... [ 46%] packages/core/penaltymodel_code reading sources... [ 50%] packages/core/using_factories reading sources... [ 53%] packages/index reading sources... [ 57%] packages/lp/generation reading sources... [ 61%] packages/lp/index reading sources... [ 65%] packages/lp/interface reading sources... [ 69%] packages/lp/license reading sources... [ 73%] packages/maxgap/generation reading sources... [ 76%] packages/maxgap/index reading sources... [ 80%] packages/maxgap/interface reading sources... [ 84%] packages/maxgap/license reading sources... [ 88%] packages/mip/generation reading sources... [ 92%] packages/mip/index reading sources... [ 96%] packages/mip/interface reading sources... [100%] packages/mip/license looking for now-outdated files... none found pickling environment... done checking consistency... done processing penaltymodel.tex...index packages/index packages/core/index packages/core/penaltymodel_code packages/core/using_factories packages/core/license packages/cache/index packages/cache/interface packages/cache/database packages/cache/database_schema packages/cache/cache packages/cache/license packages/maxgap/index packages/maxgap/interface packages/maxgap/generation packages/maxgap/license packages/mip/index packages/mip/interface packages/mip/generation packages/mip/license packages/lp/index packages/lp/interface packages/lp/generation packages/lp/license installation license resolving references... writing... done copying images... [ 50%] https://user-images.githubusercontent.com/8395238/34234533-8da5a364-e5a0-11e7-9d9f-068b4ab3a0fd.png copying images... [100%] https://user-images.githubusercontent.com/8395238/34234545-9c93e5f2-e5a0-11e7-8792-5777a5c4303e.png copying TeX support files... done build succeeded. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2019-06-18T20:54:52.870784Z, end-time: 2019-06-18T20:54:53.178771Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2019-06-18T20:54:53.238951Z, end-time: 2019-06-18T20:54:56.014674Z, duration: 2, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=d-wave-systems-penaltymodel -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="d-wave-systems-penaltymodel" "penaltymodel.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./penaltymodel.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file d-wave-systems-penaltymodel.idx (./d-wave-systems-penaltymodel.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Package tabulary Warning: No suitable columns! on input line 146. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [1] [2 <./73e5633993 1580fb66140286f509f05feec4552d.png> <./39535f6b00820580890b61e6d198b5a8da0c5ed0 .png>] Chapter 1. LaTeX Warning: Hyper reference `packages/core/penaltymodel_code:penaltymodel.co re.classes.specification.Specification' on page 3 undefined on input line 247. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 263--270 []\T1/pcr/b/n/10 feasible_configurations \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 di ct[][][[][]tuple[][][[][]int[][]], number]/ [3] Underfull \hbox (badness 10000) in paragraph at lines 289--297 []\T1/pcr/b/n/10 ising_linear_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dict[] [][node, [number, number]], optional, Underfull \hbox (badness 10000) in paragraph at lines 299--309 []\T1/pcr/b/n/10 ising_quadratic_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dic t[][][node, [][]dict[][][node, [number, [4] LaTeX Warning: Hyper reference `packages/core/penaltymodel_code:penaltymodel.co re.classes.specification.Specification' on page 5 undefined on input line 470. [5] LaTeX Warning: Hyper reference `packages/core/penaltymodel_code:penaltymodel.co re.classes.penaltymodel.PenaltyModel' on page 6 undefined on input line 487. LaTeX Warning: Hyper reference `packages/core/penaltymodel_code:penaltymodel.co re.classes.penaltymodel.PenaltyModel' on page 6 undefined on input line 516. Underfull \hbox (badness 10000) in paragraph at lines 550--550 []\T1/ptm/m/it/10 graph\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-ci-sion_variables\T1 /ptm/m/n/10 , \T1/ptm/m/it/10 fea-si-ble_configurations\T1/ptm/m/n/10 , \T1/ptm /m/it/10 var- Underfull \hbox (badness 10000) in paragraph at lines 550--550 \T1/ptm/m/it/10 type\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ising_linear_ranges=None\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 ising_quadratic_ranges=None\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `packages/core/penaltymodel_code:penaltymodel.co re.classes.penaltymodel.PenaltyModel' on page 6 undefined on input line 553. [6] Underfull \hbox (badness 10000) in paragraph at lines 571--578 []\T1/pcr/b/n/10 feasible_configurations \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 di ct[][][[][]tuple[][][[][]int[][]], number]/ Underfull \hbox (badness 10000) in paragraph at lines 586--594 []\T1/pcr/b/n/10 ising_linear_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dict[] [][node, [number, number]], optional, Underfull \hbox (badness 10000) in paragraph at lines 596--606 []\T1/pcr/b/n/10 ising_quadratic_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dic t[][][node, [][]dict[][][node, [number, [7] LaTeX Warning: Hyper reference `packages/core/penaltymodel_code:penaltymodel.co re.classes.specification.Specification' on page 8 undefined on input line 744. LaTeX Warning: Hyper reference `packages/core/using_factories:penaltymodel.core .interface.FACTORY_ENTRYPOINT' on page 8 undefined on input line 762. LaTeX Warning: Hyper reference `packages/core/using_factories:penaltymodel.core .interface.get_penalty_model' on page 8 undefined on input line 763. [8] LaTeX Warning: Hyper reference `packages/core/penaltymodel_code:penaltymodel.co re.classes.specification.Specification' on page 9 undefined on input line 812. LaTeX Warning: Hyper reference `packages/core/penaltymodel_code:penaltymodel.co re.classes.penaltymodel.PenaltyModel' on page 9 undefined on input line 821. LaTeX Warning: Hyper reference `packages/core/penaltymodel_code:penaltymodel.co re.classes.specification.Specification' on page 9 undefined on input line 864. LaTeX Warning: Hyper reference `packages/core/penaltymodel_code:penaltymodel.co re.classes.penaltymodel.PenaltyModel' on page 9 undefined on input line 865. [9] [10] [11] [12] LaTeX Warning: Hyper reference `packages/cache/cache:penaltymodel.cache.cache_m anager.cache_file' on page 13 undefined on input line 1201. [13] [14] [15] [16] Underfull \vbox (badness 10000) detected at line 1582 Overfull \vbox (2.68169pt too high) detected at line 1582 [17] Underfull \hbox (badness 10000) in paragraph at lines 1589--1589 []\T1/ptm/m/it/10 app_name='dwave-penaltymodel-cache'\T1/ptm/m/n/10 , \T1/ptm/m /it/10 app_author='dwave-systems'\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- LaTeX Warning: Hyper reference `packages/cache/cache:penaltymodel.cache.cache_m anager.APPNAME' on page 18 undefined on input line 1599. LaTeX Warning: Hyper reference `packages/cache/cache:penaltymodel.cache.cache_m anager.APPAUTHOR' on page 18 undefined on input line 1603. LaTeX Warning: Hyper reference `packages/cache/cache:penaltymodel.cache.cache_m anager.DATABASENAME' on page 18 undefined on input line 1607. [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1903--1903 []\T1/ptm/m/it/10 graph\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fea-si-ble_configuratio ns\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-ci-sion_variables\T1/ptm/m/n/10 , \T1/ptm /m/it/10 lin-ear_energy_ranges\T1/ptm/m/n/10 , [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 2231--2231 \T1/ptm/m/it/10 min_classical_gap=2\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pre-ci-sion =7\T1/ptm/m/n/10 , \T1/ptm/m/it/10 max_decision=8\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 max_variables=10\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [25] [26] [27] Underfull \hbox (badness 10000) in paragraph at lines 2557--2557 []\T1/ptm/m/it/10 graph\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ta-ble\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-ci-sion_variables\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lin-ear_en ergy_ranges=None\T1/ptm/m/n/10 , [28] [29] [30] [31] [32] [33] [34] [35] [36] LaTeX Warning: Reference `packages/cache/cache:module-penaltymodel.cache.cache_ manager' on page 37 undefined on input line 3126. LaTeX Warning: Reference `packages/cache/database:module-penaltymodel.cache.dat abase_manager' on page 37 undefined on input line 3127. LaTeX Warning: Reference `packages/cache/interface:module-penaltymodel.cache.in terface' on page 37 undefined on input line 3128. LaTeX Warning: Reference `packages/core/penaltymodel_code:module-penaltymodel.c ore.classes.penaltymodel' on page 37 undefined on input line 3129. Overfull \hbox (0.6225pt too wide) in paragraph at lines 3129--3130 []\T1/pcr/m/n/10 penaltymodel.core.classes.penaltymodel\T1/ptm/m/n/10 , LaTeX Warning: Reference `packages/core/penaltymodel_code:module-penaltymodel.c ore.classes.specification' on page 37 undefined on input line 3130. Overfull \hbox (6.6225pt too wide) in paragraph at lines 3130--3131 []\T1/pcr/m/n/10 penaltymodel.core.classes.specification\T1/ptm/m/n/10 , LaTeX Warning: Reference `packages/core/using_factories:module-penaltymodel.cor e.exceptions' on page 37 undefined on input line 3131. LaTeX Warning: Reference `packages/core/using_factories:module-penaltymodel.cor e.interface' on page 37 undefined on input line 3132. LaTeX Warning: Reference `packages/lp/generation:module-penaltymodel.lp.generat ion' on page 37 undefined on input line 3135. LaTeX Warning: Reference `packages/lp/interface:module-penaltymodel.lp.interfac e' on page 37 undefined on input line 3136. LaTeX Warning: Reference `packages/maxgap/generation:module-penaltymodel.maxgap .generation' on page 37 undefined on input line 3139. LaTeX Warning: Reference `packages/maxgap/interface:module-penaltymodel.maxgap. interface' on page 37 undefined on input line 3140. LaTeX Warning: Reference `packages/mip/generation:module-penaltymodel.mip.gener ation' on page 37 undefined on input line 3141. LaTeX Warning: Reference `packages/mip/interface:module-penaltymodel.mip.interf ace' on page 37 undefined on input line 3142. [37] No file d-wave-systems-penaltymodel.ind. (./d-wave-systems-penaltymodel.aux) Package rerunfilecheck Warning: File `d-wave-systems-penaltymodel.out' has chan ged. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on d-wave-systems-penaltymodel.pdf (41 pages, 273643 bytes). Transcript written on d-wave-systems-penaltymodel.log. Latexmk: Index file 'd-wave-systems-penaltymodel.idx' was written Latexmk: Missing input file: 'd-wave-systems-penaltymodel.ind' from line 'No file d-wave-systems-penaltymodel.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'd-wave-systems-penaltymodel.pdf' Latexmk: List of undefined refs and citations: Reference `packages/cache/cache:module-penaltymodel.cache.cache_manager' on page 37 undefined on input line 3126 Reference `packages/cache/database:module-penaltymodel.cache.database_manager' on page 37 undefined on input line 3127 Reference `packages/cache/interface:module-penaltymodel.cache.interface' on page 37 undefined on input line 3128 Reference `packages/core/penaltymodel_code:module-penaltymodel.core.classes.penaltymodel' on page 37 undefined on input line 3129 Reference `packages/core/penaltymodel_code:module-penaltymodel.core.classes.specification' on page 37 undefined on input line 3130 Reference `packages/core/using_factories:module-penaltymodel.core.exceptions' on page 37 undefined on input line 3131 Reference `packages/core/using_factories:module-penaltymodel.core.interface' on page 37 undefined on input line 3132 Reference `packages/lp/generation:module-penaltymodel.lp.generation' on page 37 undefined on input line 3135 Reference `packages/lp/interface:module-penaltymodel.lp.interface' on page 37 undefined on input line 3136 Reference `packages/maxgap/generation:module-penaltymodel.maxgap.generation' on page 37 undefined on input line 3139 Reference `packages/maxgap/interface:module-penaltymodel.maxgap.interface' on page 37 undefined on input line 3140 Reference `packages/mip/generation:module-penaltymodel.mip.generation' on page 37 undefined on input line 3141 Reference `packages/mip/interface:module-penaltymodel.mip.interface' on page 37 undefined on input line 3142 Latexmk: Summary of warnings: Latex failed to resolve 13 reference(s) Rule 'makeindex d-wave-systems-penaltymodel.idx': File changes, etc: Non-existent destination files: 'd-wave-systems-penaltymodel.ind' ------------ Run number 1 of rule 'makeindex d-wave-systems-penaltymodel.idx' ------------ ------------ Running 'makeindex -s python.ist -o "d-wave-systems-penaltymodel.ind" "d-wave-systems-penaltymodel.idx"' ------------ Latexmk: applying rule 'makeindex d-wave-systems-penaltymodel.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file d-wave-systems-penaltymodel.idx....done (64 entries accepted, 0 rejected). Sorting entries....done (394 comparisons). Generating output file d-wave-systems-penaltymodel.ind....done (125 lines written, 0 warnings). Output written in d-wave-systems-penaltymodel.ind. Transcript written in d-wave-systems-penaltymodel.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'd-wave-systems-penaltymodel.aux' 'd-wave-systems-penaltymodel.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="d-wave-systems-penaltymodel" "penaltymodel.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./penaltymodel.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file d-wave-systems-penaltymodel.idx (./d-wave-systems-penaltymodel.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./d-wave-systems-penaltymodel.out) (./d-wave-systems-penaltymodel.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./d-wave-systems-penaltymodel.toc) [1] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Package tabulary Warning: No suitable columns! on input line 146. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [1] [2 <./73e5633993 1580fb66140286f509f05feec4552d.png> <./39535f6b00820580890b61e6d198b5a8da0c5ed0 .png>] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 263--270 []\T1/pcr/b/n/10 feasible_configurations \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 di ct[][][[][]tuple[][][[][]int[][]], number]/ [3] Underfull \hbox (badness 10000) in paragraph at lines 289--297 []\T1/pcr/b/n/10 ising_linear_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dict[] [][node, [number, number]], optional, Underfull \hbox (badness 10000) in paragraph at lines 299--309 []\T1/pcr/b/n/10 ising_quadratic_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dic t[][][node, [][]dict[][][node, [number, [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 550--550 []\T1/ptm/m/it/10 graph\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-ci-sion_variables\T1 /ptm/m/n/10 , \T1/ptm/m/it/10 fea-si-ble_configurations\T1/ptm/m/n/10 , \T1/ptm /m/it/10 var- Underfull \hbox (badness 10000) in paragraph at lines 550--550 \T1/ptm/m/it/10 type\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ising_linear_ranges=None\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 ising_quadratic_ranges=None\T1/ptm/m/n/10 , [6] Underfull \hbox (badness 10000) in paragraph at lines 571--578 []\T1/pcr/b/n/10 feasible_configurations \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 di ct[][][[][]tuple[][][[][]int[][]], number]/ Underfull \hbox (badness 10000) in paragraph at lines 586--594 []\T1/pcr/b/n/10 ising_linear_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dict[] [][node, [number, number]], optional, Underfull \hbox (badness 10000) in paragraph at lines 596--606 []\T1/pcr/b/n/10 ising_quadratic_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dic t[][][node, [][]dict[][][node, [number, [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Underfull \vbox (badness 10000) detected at line 1582 Overfull \vbox (2.68169pt too high) detected at line 1582 [17] Underfull \hbox (badness 10000) in paragraph at lines 1589--1589 []\T1/ptm/m/it/10 app_name='dwave-penaltymodel-cache'\T1/ptm/m/n/10 , \T1/ptm/m /it/10 app_author='dwave-systems'\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1903--1903 []\T1/ptm/m/it/10 graph\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fea-si-ble_configuratio ns\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-ci-sion_variables\T1/ptm/m/n/10 , \T1/ptm /m/it/10 lin-ear_energy_ranges\T1/ptm/m/n/10 , [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 2231--2231 \T1/ptm/m/it/10 min_classical_gap=2\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pre-ci-sion =7\T1/ptm/m/n/10 , \T1/ptm/m/it/10 max_decision=8\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 max_variables=10\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [25] [26] [27] Underfull \hbox (badness 10000) in paragraph at lines 2557--2557 []\T1/ptm/m/it/10 graph\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ta-ble\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-ci-sion_variables\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lin-ear_en ergy_ranges=None\T1/ptm/m/n/10 , [28] [29] [30] [31] [32] [33] [34] [35] [36] Overfull \hbox (0.6225pt too wide) in paragraph at lines 3129--3130 []\T1/pcr/m/n/10 penaltymodel.core.classes.penaltymodel\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 3130--3131 []\T1/pcr/m/n/10 penaltymodel.core.classes.specification\T1/ptm/m/n/10 , [37] (./d-wave-systems-penaltymodel.ind [38] Underfull \hbox (badness 10000) in paragraph at lines 8--9 []\T1/pcr/m/n/10 APPAUTHOR \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 9--10 []\T1/pcr/m/n/10 APPNAME \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/pcr/m/n/10 cache_connect() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pen al-ty- Underfull \hbox (badness 10000) in paragraph at lines 15--16 []\T1/pcr/m/n/10 CACHE_ENTRYPOINT \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pe nal-ty- Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/pcr/m/n/10 cache_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal- ty- Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/pcr/m/n/10 cache_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/pcr/m/n/10 DATABASENAME \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal- ty- Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/pcr/m/n/10 FACTORY_ENTRYPOINT \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 34--35 []\T1/pcr/m/n/10 feasible_configurations \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Penal- ty-Model at- Underfull \hbox (badness 10000) in paragraph at lines 35--36 []\T1/pcr/m/n/10 feasible_configurations \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Spec-i -fi-ca-tion at- Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/pcr/m/n/10 from_specification() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/ptm/m/it/10 model.core.classes.penaltymodel.PenaltyModel Underfull \hbox (badness 10000) in paragraph at lines 41--42 []\T1/pcr/m/n/10 generate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty - Underfull \hbox (badness 10000) in paragraph at lines 42--43 []\T1/pcr/m/n/10 generate_bqm() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pena l-ty- Underfull \hbox (badness 10000) in paragraph at lines 43--44 []\T1/pcr/m/n/10 generate_bqm() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pena l-ty- Underfull \hbox (badness 10000) in paragraph at lines 45--47 []\T1/pcr/m/n/10 get_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 47--49 []\T1/pcr/m/n/10 get_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 49--51 []\T1/pcr/m/n/10 get_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 51--53 []\T1/pcr/m/n/10 get_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 53--55 []\T1/pcr/m/n/10 get_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 62--64 \T1/ptm/m/it/10 ule penal-ty-model.cache.database_manager\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 insert_graph() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pena l-ty- Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 insert_ising_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e penal-ty- Underfull \hbox (badness 5431) in paragraph at lines 68--70 []\T1/pcr/m/n/10 insert_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 72--73 []\T1/pcr/m/n/10 ising_quadratic_ranges \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Penal-t y-Model at- Underfull \hbox (badness 10000) in paragraph at lines 73--74 []\T1/pcr/m/n/10 ising_quadratic_ranges \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Spec-i- fi-ca-tion at- Underfull \hbox (badness 10000) in paragraph at lines 74--75 []\T1/pcr/m/n/10 iter_caches() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal -ty- Underfull \hbox (badness 10000) in paragraph at lines 75--76 []\T1/pcr/m/n/10 iter_factories() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pe nal-ty- [39] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/pcr/m/n/10 iter_graph() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal- ty- Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/pcr/m/n/10 iter_ising_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Overfull \hbox (4.1225pt too wide) in paragraph at lines 82--84 []\T1/pcr/m/n/10 iter_penalty_model_from_specification() Underfull \hbox (badness 10000) in paragraph at lines 82--84 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 93--95 []\T1/pcr/m/n/10 PenaltyModel \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in penal-ty - Underfull \hbox (badness 10000) in paragraph at lines 95--96 []\T1/pcr/m/n/10 penaltymodel.cache.cache_manager \T1/ptm/m/n/10 (\T1/ptm/m/it/ 10 mod- Underfull \hbox (badness 10000) in paragraph at lines 96--97 []\T1/pcr/m/n/10 penaltymodel.cache.database_manager Underfull \hbox (badness 10000) in paragraph at lines 98--99 []\T1/pcr/m/n/10 penaltymodel.core.classes.penaltymodel Overfull \hbox (4.1225pt too wide) in paragraph at lines 99--100 []\T1/pcr/m/n/10 penaltymodel.core.classes.specification Underfull \hbox (badness 10000) in paragraph at lines 104--105 []\T1/pcr/m/n/10 penaltymodel.maxgap.generation \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mod-ule\T1/ptm/m/n/10 ), Underfull \hbox (badness 5431) in paragraph at lines 108--110 []\T1/pcr/m/n/10 penaltymodel_factory() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/pcr/m/n/10 Specification \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in penal-t y- [40]) (./d-wave-systems-penaltymodel.aux) Package rerunfilecheck Warning: File `d-wave-systems-penaltymodel.out' has chan ged. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on d-wave-systems-penaltymodel.pdf (44 pages, 283418 bytes). Transcript written on d-wave-systems-penaltymodel.log. Latexmk: Index file 'd-wave-systems-penaltymodel.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'd-wave-systems-penaltymodel.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'd-wave-systems-penaltymodel.aux' 'd-wave-systems-penaltymodel.out' 'd-wave-systems-penaltymodel.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="d-wave-systems-penaltymodel" "penaltymodel.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./penaltymodel.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file d-wave-systems-penaltymodel.idx (./d-wave-systems-penaltymodel.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./d-wave-systems-penaltymodel.out) (./d-wave-systems-penaltymodel.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./d-wave-systems-penaltymodel.toc) [1] [2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Package tabulary Warning: No suitable columns! on input line 146. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [1] [2 <./73e5633993 1580fb66140286f509f05feec4552d.png> <./39535f6b00820580890b61e6d198b5a8da0c5ed0 .png>] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 263--270 []\T1/pcr/b/n/10 feasible_configurations \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 di ct[][][[][]tuple[][][[][]int[][]], number]/ [3] Underfull \hbox (badness 10000) in paragraph at lines 289--297 []\T1/pcr/b/n/10 ising_linear_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dict[] [][node, [number, number]], optional, Underfull \hbox (badness 10000) in paragraph at lines 299--309 []\T1/pcr/b/n/10 ising_quadratic_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dic t[][][node, [][]dict[][][node, [number, [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 550--550 []\T1/ptm/m/it/10 graph\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-ci-sion_variables\T1 /ptm/m/n/10 , \T1/ptm/m/it/10 fea-si-ble_configurations\T1/ptm/m/n/10 , \T1/ptm /m/it/10 var- Underfull \hbox (badness 10000) in paragraph at lines 550--550 \T1/ptm/m/it/10 type\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ising_linear_ranges=None\T 1/ptm/m/n/10 , \T1/ptm/m/it/10 ising_quadratic_ranges=None\T1/ptm/m/n/10 , [6] Underfull \hbox (badness 10000) in paragraph at lines 571--578 []\T1/pcr/b/n/10 feasible_configurations \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 di ct[][][[][]tuple[][][[][]int[][]], number]/ Underfull \hbox (badness 10000) in paragraph at lines 586--594 []\T1/pcr/b/n/10 ising_linear_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dict[] [][node, [number, number]], optional, Underfull \hbox (badness 10000) in paragraph at lines 596--606 []\T1/pcr/b/n/10 ising_quadratic_ranges \T1/ptm/m/n/10 ([][]\T1/pcr/m/sl/10 dic t[][][node, [][]dict[][][node, [number, [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Underfull \vbox (badness 10000) detected at line 1582 Overfull \vbox (2.68169pt too high) detected at line 1582 [17] Underfull \hbox (badness 10000) in paragraph at lines 1589--1589 []\T1/ptm/m/it/10 app_name='dwave-penaltymodel-cache'\T1/ptm/m/n/10 , \T1/ptm/m /it/10 app_author='dwave-systems'\T1/ptm/m/n/10 , \T1/ptm/m/it/10 file- [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1903--1903 []\T1/ptm/m/it/10 graph\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fea-si-ble_configuratio ns\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-ci-sion_variables\T1/ptm/m/n/10 , \T1/ptm /m/it/10 lin-ear_energy_ranges\T1/ptm/m/n/10 , [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 2231--2231 \T1/ptm/m/it/10 min_classical_gap=2\T1/ptm/m/n/10 , \T1/ptm/m/it/10 pre-ci-sion =7\T1/ptm/m/n/10 , \T1/ptm/m/it/10 max_decision=8\T1/ptm/m/n/10 , \T1/ptm/m/it/ 10 max_variables=10\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- [25] [26] [27] Underfull \hbox (badness 10000) in paragraph at lines 2557--2557 []\T1/ptm/m/it/10 graph\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ta-ble\T1/ptm/m/n/10 , \T1/ptm/m/it/10 de-ci-sion_variables\T1/ptm/m/n/10 , \T1/ptm/m/it/10 lin-ear_en ergy_ranges=None\T1/ptm/m/n/10 , [28] [29] [30] [31] [32] [33] [34] [35] [36] Overfull \hbox (0.6225pt too wide) in paragraph at lines 3129--3130 []\T1/pcr/m/n/10 penaltymodel.core.classes.penaltymodel\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 3130--3131 []\T1/pcr/m/n/10 penaltymodel.core.classes.specification\T1/ptm/m/n/10 , [37] (./d-wave-systems-penaltymodel.ind [38] Underfull \hbox (badness 10000) in paragraph at lines 8--9 []\T1/pcr/m/n/10 APPAUTHOR \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 9--10 []\T1/pcr/m/n/10 APPNAME \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/pcr/m/n/10 cache_connect() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pen al-ty- Underfull \hbox (badness 10000) in paragraph at lines 15--16 []\T1/pcr/m/n/10 CACHE_ENTRYPOINT \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pe nal-ty- Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/pcr/m/n/10 cache_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal- ty- Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/pcr/m/n/10 cache_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/pcr/m/n/10 DATABASENAME \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal- ty- Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/pcr/m/n/10 FACTORY_ENTRYPOINT \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 34--35 []\T1/pcr/m/n/10 feasible_configurations \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Penal- ty-Model at- Underfull \hbox (badness 10000) in paragraph at lines 35--36 []\T1/pcr/m/n/10 feasible_configurations \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Spec-i -fi-ca-tion at- Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/pcr/m/n/10 from_specification() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/ptm/m/it/10 model.core.classes.penaltymodel.PenaltyModel Underfull \hbox (badness 10000) in paragraph at lines 41--42 []\T1/pcr/m/n/10 generate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty - Underfull \hbox (badness 10000) in paragraph at lines 42--43 []\T1/pcr/m/n/10 generate_bqm() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pena l-ty- Underfull \hbox (badness 10000) in paragraph at lines 43--44 []\T1/pcr/m/n/10 generate_bqm() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pena l-ty- Underfull \hbox (badness 10000) in paragraph at lines 45--47 []\T1/pcr/m/n/10 get_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 47--49 []\T1/pcr/m/n/10 get_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 49--51 []\T1/pcr/m/n/10 get_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 51--53 []\T1/pcr/m/n/10 get_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 53--55 []\T1/pcr/m/n/10 get_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 62--64 \T1/ptm/m/it/10 ule penal-ty-model.cache.database_manager\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 insert_graph() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pena l-ty- Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/pcr/m/n/10 insert_ising_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e penal-ty- Underfull \hbox (badness 5431) in paragraph at lines 68--70 []\T1/pcr/m/n/10 insert_penalty_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 72--73 []\T1/pcr/m/n/10 ising_quadratic_ranges \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Penal-t y-Model at- Underfull \hbox (badness 10000) in paragraph at lines 73--74 []\T1/pcr/m/n/10 ising_quadratic_ranges \T1/ptm/m/n/10 (\T1/ptm/m/it/10 Spec-i- fi-ca-tion at- Underfull \hbox (badness 10000) in paragraph at lines 74--75 []\T1/pcr/m/n/10 iter_caches() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal -ty- Underfull \hbox (badness 10000) in paragraph at lines 75--76 []\T1/pcr/m/n/10 iter_factories() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule pe nal-ty- [39] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/pcr/m/n/10 iter_graph() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal- ty- Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/pcr/m/n/10 iter_ising_model() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Overfull \hbox (4.1225pt too wide) in paragraph at lines 82--84 []\T1/pcr/m/n/10 iter_penalty_model_from_specification() Underfull \hbox (badness 10000) in paragraph at lines 82--84 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 93--95 []\T1/pcr/m/n/10 PenaltyModel \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in penal-ty - Underfull \hbox (badness 10000) in paragraph at lines 95--96 []\T1/pcr/m/n/10 penaltymodel.cache.cache_manager \T1/ptm/m/n/10 (\T1/ptm/m/it/ 10 mod- Underfull \hbox (badness 10000) in paragraph at lines 96--97 []\T1/pcr/m/n/10 penaltymodel.cache.database_manager Underfull \hbox (badness 10000) in paragraph at lines 98--99 []\T1/pcr/m/n/10 penaltymodel.core.classes.penaltymodel Overfull \hbox (4.1225pt too wide) in paragraph at lines 99--100 []\T1/pcr/m/n/10 penaltymodel.core.classes.specification Underfull \hbox (badness 10000) in paragraph at lines 104--105 []\T1/pcr/m/n/10 penaltymodel.maxgap.generation \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mod-ule\T1/ptm/m/n/10 ), Underfull \hbox (badness 5431) in paragraph at lines 108--110 []\T1/pcr/m/n/10 penaltymodel_factory() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod- ule penal-ty- Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/pcr/m/n/10 Specification \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in penal-t y- [40]) (./d-wave-systems-penaltymodel.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on d-wave-systems-penaltymodel.pdf (44 pages, 283723 bytes). Transcript written on d-wave-systems-penaltymodel.log. Latexmk: Index file 'd-wave-systems-penaltymodel.idx' was written Latexmk: Log file says output to 'd-wave-systems-penaltymodel.pdf' Latexmk: All targets (d-wave-systems-penaltymodel.pdf) are up-to-date [rtd-command-info] start-time: 2019-06-18T20:54:56.103881Z, end-time: 2019-06-18T20:54:56.417362Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/checkouts/latest/docs/_build/latex/d-wave-systems-penaltymodel.pdf /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/artifacts/latest/sphinx_pdf/d-wave-systems-penaltymodel.pdf [rtd-command-info] start-time: 2019-06-18T20:54:56.479984Z, end-time: 2019-06-18T20:55:00.969924Z, duration: 4, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done making output directory... [autosummary] generating autosummary for: index.rst, installation.rst, license.rst, packages/cache/cache.rst, packages/cache/database.rst, packages/cache/database_schema.rst, packages/cache/index.rst, packages/cache/interface.rst, packages/cache/license.rst, packages/core/index.rst, ..., packages/lp/interface.rst, packages/lp/license.rst, packages/maxgap/generation.rst, packages/maxgap/index.rst, packages/maxgap/interface.rst, packages/maxgap/license.rst, packages/mip/generation.rst, packages/mip/index.rst, packages/mip/interface.rst, packages/mip/license.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/dimod/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/binarycsp/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/cloud-client/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/neal/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/dwave-networkx/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/system/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/penaltymodel/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/minorminer/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [epub]: targets for 26 source files that are out of date updating environment: 26 added, 0 changed, 0 removed reading sources... [ 3%] index reading sources... [ 7%] installation reading sources... [ 11%] license reading sources... [ 15%] packages/cache/cache reading sources... [ 19%] packages/cache/database reading sources... [ 23%] packages/cache/database_schema reading sources... [ 26%] packages/cache/index reading sources... [ 30%] packages/cache/interface reading sources... [ 34%] packages/cache/license reading sources... [ 38%] packages/core/index reading sources... [ 42%] packages/core/license reading sources... [ 46%] packages/core/penaltymodel_code reading sources... [ 50%] packages/core/using_factories reading sources... [ 53%] packages/index reading sources... [ 57%] packages/lp/generation reading sources... [ 61%] packages/lp/index reading sources... [ 65%] packages/lp/interface reading sources... [ 69%] packages/lp/license reading sources... [ 73%] packages/maxgap/generation reading sources... [ 76%] packages/maxgap/index reading sources... [ 80%] packages/maxgap/interface reading sources... [ 84%] packages/maxgap/license reading sources... [ 88%] packages/mip/generation reading sources... [ 92%] packages/mip/index reading sources... [ 96%] packages/mip/interface reading sources... [100%] packages/mip/license looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 3%] index writing output... [ 7%] installation writing output... [ 11%] license writing output... [ 15%] packages/cache/cache writing output... [ 19%] packages/cache/database writing output... [ 23%] packages/cache/database_schema writing output... [ 26%] packages/cache/index writing output... [ 30%] packages/cache/interface writing output... [ 34%] packages/cache/license writing output... [ 38%] packages/core/index writing output... [ 42%] packages/core/license writing output... [ 46%] packages/core/penaltymodel_code writing output... [ 50%] packages/core/using_factories writing output... [ 53%] packages/index writing output... [ 57%] packages/lp/generation writing output... [ 61%] packages/lp/index writing output... [ 65%] packages/lp/interface writing output... [ 69%] packages/lp/license writing output... [ 73%] packages/maxgap/generation writing output... [ 76%] packages/maxgap/index writing output... [ 80%] packages/maxgap/interface writing output... [ 84%] packages/maxgap/license writing output... [ 88%] packages/mip/generation writing output... [ 92%] packages/mip/index writing output... [ 96%] packages/mip/interface writing output... [100%] packages/mip/license generating indices... genindex py-modindex writing additional pages... copying images... [ 50%] https://user-images.githubusercontent.com/8395238/34234533-8da5a364-e5a0-11e7-9d9f-068b4ab3a0fd.png copying images... [100%] https://user-images.githubusercontent.com/8395238/34234545-9c93e5f2-e5a0-11e7-8792-5777a5c4303e.png copying static files... done copying extra files... done WARNING: conf value "version" should not be empty for EPUB3 writing mimetype file... writing META-INF/container.xml file... writing content.opf file... writing nav.xhtml file... writing toc.ncx file... writing PenaltyModel.epub file... build succeeded, 1 warning. The ePub file is in _build/epub. [rtd-command-info] start-time: 2019-06-18T20:55:01.061035Z, end-time: 2019-06-18T20:55:01.372159Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/checkouts/latest/docs/_build/epub/PenaltyModel.epub /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-penaltymodel/artifacts/latest/sphinx_epub/d-wave-systems-penaltymodel.epub