Read the Docs build information Build id: 2113571 Project: institute-for-disease-modeling-emodpy-hiv Version: 200 Commit: 5c0e1cfff98533e3246d473ccbfff8b648298341 Date: 2024-03-27T00:05:14.839067Z State: finished Success: False [rtd-command-info] start-time: 2024-03-27T00:07:44.556489Z, end-time: 2024-03-27T00:07:45.894998Z, duration: 1, exit-code: 0 git clone --depth 1 git@github.com:InstituteforDiseaseModeling/emodpy-hiv.git . Cloning into '.'... Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. [rtd-command-info] start-time: 2024-03-27T00:07:45.973281Z, end-time: 2024-03-27T00:07:47.938453Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/200/head:external-200 Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. From github.com:InstituteforDiseaseModeling/emodpy-hiv * [new ref] refs/pull/200/head -> external-200 [rtd-command-info] start-time: 2024-03-27T00:07:48.085224Z, end-time: 2024-03-27T00:07:48.218731Z, duration: 0, exit-code: 0 git checkout --force 5c0e1cfff98533e3246d473ccbfff8b648298341 Note: switching to '5c0e1cfff98533e3246d473ccbfff8b648298341'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 5c0e1cf Add regreesion json files that are breakdown to states, part 1 [rtd-command-info] start-time: 2024-03-27T00:07:48.291164Z, end-time: 2024-03-27T00:07:48.352371Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2024-03-27T00:07:48.418138Z, end-time: 2024-03-27T00:07:48.479424Z, duration: 0, exit-code: 0 cat .readthedocs.yml # .readthedocs.yml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Set the version of Python and other tools you might need build: os: ubuntu-20.04 tools: python: "3.9" # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py fail_on_warning: true # Build documentation with MkDocs #mkdocs: # configuration: mkdocs.yml # Optionally build your docs in additional formats such as PDF formats: - htmlzip # Optionally set the version of Python and requirements required to build your docs python: install: - requirements: requirements.txt - requirements: docs/requirements.txt - method: setuptools path: . # Optionally rank topics in search results, between -10 (lower) and 10 (higher). # 0 is normal rank, not no rank # search: # ranking: [rtd-command-info] start-time: 2024-03-27T00:07:54.153584Z, end-time: 2024-03-27T00:07:54.239933Z, duration: 0, exit-code: 0 asdf global python 3.9.18 [rtd-command-info] start-time: 2024-03-27T00:07:54.652896Z, end-time: 2024-03-27T00:07:55.892025Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.9.18.final.0-64 in 920ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/200, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2024-03-27T00:07:55.961906Z, end-time: 2024-03-27T00:08:09.417920Z, duration: 13, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/200/lib/python3.9/site-packages (23.1) Collecting pip Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8a/6a/19e9fe04fca059ccf770861c7d5721ab4c2aebc539889e97c7977528a53b/pip-24.0-py3-none-any.whl (2.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 6.5 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-hiv/envs/200/lib/python3.9/site-packages (67.6.1) Collecting setuptools Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/92/e1/1c8bb3420105e70bdf357d57dd5567202b4ef8d27f810e98bb962d950834/setuptools-69.2.0-py3-none-any.whl (821 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 821.5/821.5 kB 6.6 MB/s eta 0:00:00 Installing collected packages: setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 67.6.1 Uninstalling setuptools-67.6.1: Successfully uninstalled setuptools-67.6.1 Attempting uninstall: pip Found existing installation: pip 23.1 Uninstalling pip-23.1: Successfully uninstalled pip-23.1 Successfully installed pip-24.0 setuptools-69.2.0 [rtd-command-info] start-time: 2024-03-27T00:08:09.478488Z, end-time: 2024-03-27T00:08:17.601298Z, duration: 8, exit-code: 1 python -m pip install --upgrade --no-cache-dir sphinx readthedocs-sphinx-ext Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Collecting sphinx Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b2/b6/8ed35256aa530a9d3da15d20bdc0ba888d5364441bb50a5a83ee7827affe/sphinx-7.2.6-py3-none-any.whl (3.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.2/3.2 MB 4.5 MB/s eta 0:00:00 Collecting readthedocs-sphinx-ext Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/64/71/c89e7709a0d4f93af1848e9855112299a820b470d84f917b4dd5998bdd07/readthedocs_sphinx_ext-2.2.5-py2.py3-none-any.whl (11 kB) Collecting sphinxcontrib-applehelp (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/56/89/fea3fbf6785b388e6cb8a1beaf62f96e80b37311bdeed6e133388a732426/sphinxcontrib_applehelp-1.0.8-py3-none-any.whl (120 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 120.0/120.0 kB 1.8 MB/s eta 0:00:00 Collecting sphinxcontrib-devhelp (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a0/52/1049d918d1d1c72857d285c3f0c64c1cbe0be394ce1c93a3d2aa4f39fe3b/sphinxcontrib_devhelp-1.0.6-py3-none-any.whl (83 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 83.5/83.5 kB 996.5 kB/s eta 0:00:00 Collecting sphinxcontrib-jsmath (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c2/42/4c8646762ee83602e3fb3fbe774c2fac12f317deb0b5dbeeedd2d3ba4b77/sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c2/e9/74c4cda5b409af3222fda38f0774e616011bc935f639dbc0da5ca2d1be7d/sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl (99 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 99.2/99.2 kB 1.3 MB/s eta 0:00:00 Collecting sphinxcontrib-serializinghtml>=1.1.9 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/38/24/228bb903ea87b9e08ab33470e6102402a644127108c7117ac9c00d849f82/sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl (92 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 92.7/92.7 kB 1.2 MB/s eta 0:00:00 Collecting sphinxcontrib-qthelp (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/80/b3/1beac14a88654d2e5120d0143b49be5ad450b86eb1963523d8dbdcc51eb2/sphinxcontrib_qthelp-1.0.7-py3-none-any.whl (89 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 89.4/89.4 kB 912.1 kB/s eta 0:00:00 Collecting Jinja2>=3.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/30/6d/6de6be2d02603ab56e72997708809e8a5b0fbfee080735109b40a3564843/Jinja2-3.1.3-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.2/133.2 kB 1.2 MB/s eta 0:00:00 Collecting Pygments>=2.14 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/97/9c/372fef8377a6e340b1704768d20daaded98bf13282b5327beb2e2fe2c7ef/pygments-2.17.2-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 1.3 MB/s eta 0:00:00 Collecting docutils<0.21,>=0.18.1 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/26/87/f238c0670b94533ac0353a4e2a1a771a0cc73277b88bff23d3ae35a256c1/docutils-0.20.1-py3-none-any.whl (572 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 572.7/572.7 kB 1.3 MB/s eta 0:00:00 Collecting snowballstemmer>=2.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ed/dc/c02e01294f7265e63a7315fe086dd1df7dacb9f840a804da846b96d01b96/snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 1.6 MB/s eta 0:00:00 Collecting babel>=2.9 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0d/35/4196b21041e29a42dc4f05866d0c94fa26c9da88ce12c38c2265e42c82fb/Babel-2.14.0-py3-none-any.whl (11.0 MB) ━━╸ 0.8/11.0 MB 1.3 MB/s eta 0:00:08 ERROR: THESE PACKAGES DO NOT MATCH THE HASHES FROM THE REQUIREMENTS FILE. If you have updated the package versions, please update the hashes. Otherwise, examine the package contents carefully; someone may have tampered with them. babel>=2.9 from https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0d/35/4196b21041e29a42dc4f05866d0c94fa26c9da88ce12c38c2265e42c82fb/Babel-2.14.0-py3-none-any.whl#sha256=efb1a25b7118e67ce3a259bed20545c29cb68be8ad2c784c83689981b7a57287 (from sphinx): Expected sha256 efb1a25b7118e67ce3a259bed20545c29cb68be8ad2c784c83689981b7a57287 Got 784216cd88659755208c7d6d41527b8c5f7da35e731af5040e7b8b1369caba6b