Read the Docs build information
Build id: 2069307
Project: institute-for-disease-modeling-emod-generic
Version: latest
Commit: 7d7143fe732cf4599173d134b47d7843ceb3aa26
Date: 2024-03-07T20:06:14.078836Z
State: finished
Success: False


[rtd-command-info] start-time: 2024-03-07T20:06:15.242151Z, end-time: 2024-03-07T20:06:18.716242Z, duration: 3, exit-code: 0
git clone --depth 1 git@github.com:InstituteforDiseaseModeling/EMOD-docs.git .
Cloning into '.'...
Warning: Permanently added 'github.com' (ED25519) to the list of known hosts.

[rtd-command-info] start-time: 2024-03-07T20:06:18.784488Z, end-time: 2024-03-07T20:06:24.878732Z, duration: 6, exit-code: 0
git fetch origin --force --prune --prune-tags --depth 50 refs/heads/generic-ongoing:refs/remotes/origin/generic-ongoing
Warning: Permanently added 'github.com' (ED25519) to the list of known hosts.
From github.com:InstituteforDiseaseModeling/EMOD-docs
 * [new branch]      generic-ongoing -> origin/generic-ongoing
Warning: Permanently added 'github.com' (ED25519) to the list of known hosts.
 * [new tag]         2.21            -> 2.21

[rtd-command-info] start-time: 2024-03-07T20:06:25.014711Z, end-time: 2024-03-07T20:06:25.457800Z, duration: 0, exit-code: 0
git checkout --force origin/generic-ongoing
Note: switching to 'origin/generic-ongoing'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 7d7143f Merge pull request #1890 from InstituteforDiseaseModeling/MIzzo-IDM-patch-2

[rtd-command-info] start-time: 2024-03-07T20:06:25.523998Z, end-time: 2024-03-07T20:06:25.588942Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2024-03-07T20:06:25.656838Z, end-time: 2024-03-07T20:06:25.717413Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# .readthedocs.yml
# Read the Docs configuration file
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details

# Required
version: 2

# Set the version of Python and other tools you might need
build:
  os: ubuntu-20.04
  tools:
    python: "3.9"

# Build documentation in the docs/ directory with Sphinx
sphinx:
  fail_on_warning: true

# Build documentation with MkDocs
#mkdocs:
#  configuration: mkdocs.yml

# Optionally build your docs in additional formats such as PDF
formats:
  - htmlzip

# Optionally set the version of Python and requirements required to build your docs
python:
  
  install:
    - requirements: requirements.txt
        
# Optionally rank topics in search results, between -10 (lower) and 10 (higher).
# 0 is normal rank, not no rank

search:
  ranking:
    install-overview.html: 3
    model-overview.html: 3
    faq.html: 2
    parameter-overview.html: 2
    dev*: -5

[rtd-command-info] start-time: 2024-03-07T20:06:31.641369Z, end-time: 2024-03-07T20:06:31.725799Z, duration: 0, exit-code: 0
asdf global python 3.9.18


[rtd-command-info] start-time: 2024-03-07T20:06:32.123943Z, end-time: 2024-03-07T20:06:33.239055Z, duration: 1, exit-code: 0
python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.9.18.final.0-64 in 796ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-generic/envs/latest, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0
  activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2024-03-07T20:06:33.302995Z, end-time: 2024-03-07T20:06:43.894982Z, duration: 10, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-generic/envs/latest/lib/python3.9/site-packages (23.1)
Collecting pip
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Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 67.6.1
    Uninstalling setuptools-67.6.1:
      Successfully uninstalled setuptools-67.6.1
  Attempting uninstall: pip
    Found existing installation: pip 23.1
    Uninstalling pip-23.1:
      Successfully uninstalled pip-23.1
Successfully installed pip-24.0 setuptools-69.1.1

[rtd-command-info] start-time: 2024-03-07T20:06:43.980690Z, end-time: 2024-03-07T20:06:51.605232Z, duration: 7, exit-code: 0
python -m pip install --upgrade --no-cache-dir sphinx readthedocs-sphinx-ext
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Installing collected packages: snowballstemmer, zipp, urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, importlib-metadata, sphinx, readthedocs-sphinx-ext
Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.5 Pygments-2.17.2 alabaster-0.7.16 babel-2.14.0 certifi-2024.2.2 charset-normalizer-3.3.2 docutils-0.20.1 idna-3.6 imagesize-1.4.1 importlib-metadata-7.0.2 packaging-23.2 readthedocs-sphinx-ext-2.2.5 requests-2.31.0 snowballstemmer-2.2.0 sphinx-7.2.6 sphinxcontrib-applehelp-1.0.8 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.5 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 urllib3-2.2.1 zipp-3.17.0

[rtd-command-info] start-time: 2024-03-07T20:06:51.689479Z, end-time: 2024-03-07T20:07:12.982051Z, duration: 21, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements.txt
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Downloading types_python_dateutil-2.8.19.20240106-py3-none-any.whl (9.7 kB)
Installing collected packages: webencodings, wcwidth, pure-eval, ptyprocess, fastjsonschema, wrapt, websocket-client, webcolors, uri-template, typing-extensions, types-python-dateutil, traitlets, tornado, tomli, tinycss2, soupsieve, sniffio, six, send2trash, rpds-py, rfc3986-validator, readthedocs-sphinx-search, pyzmq, pyyaml, python-json-logger, pyjwt, pycparser, psutil, prompt-toolkit, prometheus-client, platformdirs, pexpect, parso, pandocfilters, overrides, nest-asyncio, mistune, mdurl, jupyterlab-pygments, jsonpointer, json5, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, attrs, terminado, sphinx, rfc3339-validator, referencing, python-dateutil, pockets, plantweb, matplotlib-inline, markdown-it-py, jupyter-core, jedi, deprecated, comm, cffi, bleach, beautifulsoup4, async-lru, asttokens, anyio, stack-data, sphinxcontrib-programoutput, sphinxcontrib-napoleon, sphinxcontrib-jquery, sphinx-copybutton, pynacl, mdit-py-plugins, jupyter-server-terminals, jupyter-client, jsonschema-specifications, cryptography, arrow, argon2-cffi-bindings, sphinx-rtd-theme, myst-parser, jsonschema, isoduration, ipython, argon2-cffi, pygithub, nbformat, ipykernel, nbclient, jupyter-events, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab
  Attempting uninstall: docutils
    Found existing installation: docutils 0.20.1
    Uninstalling docutils-0.20.1:
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  Attempting uninstall: sphinx
    Found existing installation: Sphinx 7.2.6
    Uninstalling Sphinx-7.2.6:
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Successfully installed anyio-4.3.0 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 attrs-23.2.0 beautifulsoup4-4.12.3 bleach-6.1.0 cffi-1.16.0 comm-0.2.1 cryptography-42.0.5 debugpy-1.8.1 decorator-5.1.1 defusedxml-0.7.1 deprecated-1.2.14 docutils-0.18.1 exceptiongroup-1.2.0 executing-2.0.1 fastjsonschema-2.19.1 fqdn-1.5.1 ipykernel-6.29.3 ipython-8.18.1 isoduration-20.11.0 jedi-0.19.1 json5-0.9.22 jsonpointer-2.4 jsonschema-4.21.1 jsonschema-specifications-2023.12.1 jupyter-client-8.6.0 jupyter-core-5.7.1 jupyter-events-0.9.0 jupyter-lsp-2.2.4 jupyter-server-2.13.0 jupyter-server-terminals-0.5.2 jupyterlab-4.0.13 jupyterlab-pygments-0.3.0 jupyterlab-server-2.25.3 markdown-it-py-3.0.0 matplotlib-inline-0.1.6 mdit-py-plugins-0.4.0 mdurl-0.1.2 mistune-3.0.2 myst-parser-2.0.0 nbclient-0.9.0 nbconvert-7.16.2 nbformat-5.9.2 nbsphinx-0.9.3 nest-asyncio-1.6.0 notebook-shim-0.2.4 overrides-7.7.0 pandocfilters-1.5.1 parso-0.8.3 pexpect-4.9.0 plantweb-1.2.1 platformdirs-4.2.0 pockets-0.9.1 prometheus-client-0.20.0 prompt-toolkit-3.0.43 psutil-5.9.8 ptyprocess-0.7.0 pure-eval-0.2.2 pycparser-2.21 pygithub-1.59.1 pyjwt-2.8.0 pynacl-1.5.0 python-dateutil-2.9.0.post0 python-json-logger-2.0.7 pyyaml-6.0.1 pyzmq-25.1.2 readthedocs-sphinx-search-0.3.2 referencing-0.33.0 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.18.0 send2trash-1.8.2 six-1.16.0 sniffio-1.3.1 soupsieve-2.5 sphinx-6.2.1 sphinx-copybutton-0.5.2 sphinx-rtd-theme-1.2.2 sphinxcontrib-jquery-4.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 stack-data-0.6.3 terminado-0.18.0 tinycss2-1.2.1 tomli-2.0.1 tornado-6.4 traitlets-5.14.1 types-python-dateutil-2.8.19.20240106 typing-extensions-4.10.0 uri-template-1.3.0 wcwidth-0.2.13 webcolors-1.13 webencodings-0.5.1 websocket-client-1.7.0 wrapt-1.16.0