Read the Docs build information Build id: 2022267 Project: icb-anndata Version: 1247 Commit: 118d6024017b9141ff0c452f4d347d7400247da2 Date: 2024-02-16T12:47:06.045409Z State: finished Success: False [rtd-command-info] start-time: 2024-02-16T12:47:07.135227Z, end-time: 2024-02-16T12:47:07.698477Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/scverse/anndata.git . Cloning into '.'... [rtd-command-info] start-time: 2024-02-16T12:47:07.765082Z, end-time: 2024-02-16T12:47:08.922330Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/1247/head:external-1247 From https://github.com/scverse/anndata * [new ref] refs/pull/1247/head -> external-1247 * [new tag] 0.10.0 -> 0.10.0 * [new tag] 0.11.0.dev0 -> 0.11.0.dev0 [rtd-command-info] start-time: 2024-02-16T12:47:09.064000Z, end-time: 2024-02-16T12:47:09.140840Z, duration: 0, exit-code: 0 git checkout --force 118d6024017b9141ff0c452f4d347d7400247da2 Note: switching to '118d6024017b9141ff0c452f4d347d7400247da2'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 118d602 (fix): zarr anndata now passing. [rtd-command-info] start-time: 2024-02-16T12:47:09.215261Z, end-time: 2024-02-16T12:47:09.271022Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2024-02-16T12:47:09.455187Z, end-time: 2024-02-16T12:47:09.538482Z, duration: 0, exit-code: 0 git submodule sync [rtd-command-info] start-time: 2024-02-16T12:47:09.601366Z, end-time: 2024-02-16T12:47:10.318917Z, duration: 0, exit-code: 0 git submodule update --init --force --recursive -- docs/tutorials/notebooks Submodule 'docs/tutorials/notebooks' (https://github.com/scverse/anndata-tutorials) registered for path 'docs/tutorials/notebooks' Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/1247/docs/tutorials/notebooks'... Submodule path 'docs/tutorials/notebooks': checked out '9e186c5c694793bb04ea1397721d154d6e0b7069' [rtd-command-info] start-time: 2024-02-16T12:47:10.391357Z, end-time: 2024-02-16T12:47:10.458786Z, duration: 0, exit-code: 0 cat .readthedocs.yml version: 2 build: os: ubuntu-20.04 tools: python: "3.11" sphinx: configuration: docs/conf.py fail_on_warning: true # do not change or you will be fired python: install: - method: pip path: . extra_requirements: - doc submodules: include: - "docs/tutorials/notebooks" recursive: true [rtd-command-info] start-time: 2024-02-16T12:47:16.572583Z, end-time: 2024-02-16T12:47:16.649590Z, duration: 0, exit-code: 0 asdf global python 3.11.6 [rtd-command-info] start-time: 2024-02-16T12:47:17.051033Z, end-time: 2024-02-16T12:47:18.108185Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.11.6.final.0-64 in 746ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2024-02-16T12:47:18.175734Z, end-time: 2024-02-16T12:47:30.178380Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages (23.1) Collecting pip Downloading pip-24.0-py3-none-any.whl (2.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 37.7 MB/s eta 0:00:00 Requirement already satisfied: setuptools in 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2024-02-16T12:48:09.780171Z, duration: 33, exit-code: 0 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir .[doc] Processing /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/1247 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting array-api-compat (from anndata==0.11.0.dev85+g118d602) Downloading array_api_compat-1.4.1-py3-none-any.whl.metadata (13 kB) Collecting h5py>=3 (from anndata==0.11.0.dev85+g118d602) Downloading h5py-3.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Collecting natsort (from anndata==0.11.0.dev85+g118d602) Downloading natsort-8.4.0-py3-none-any.whl.metadata (21 kB) Collecting numpy>=1.16.5 (from 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filename=anndata-0.11.0.dev85+g118d602-py3-none-any.whl size=128631 sha256=fae93f45fa65b5bc8e4db30efc065683882c933c47e28fa57e40406cf2861923 Stored in directory: /tmp/pip-ephem-wheel-cache-dy7ynq22/wheels/66/31/ed/37ad301916c9439f593bee06756e7d64a31c7f2a6f4106ad99 Building wheel for asciitree (setup.py): started Building wheel for asciitree (setup.py): finished with status 'done' Created wheel for asciitree: filename=asciitree-0.3.3-py3-none-any.whl size=5034 sha256=fac7f04a5cfbdf9a41002fde1fc13c6b2d1c77ea467a918b7c0bb88a0515d40f Stored in directory: /tmp/pip-ephem-wheel-cache-dy7ynq22/wheels/71/c1/da/23077eb3b87d24d6f3852ed1ed1a1ac2d3c885ad6ebd2b4a07 Successfully built anndata asciitree Installing collected packages: webencodings, wcwidth, pytz, pure-eval, ptyprocess, fastjsonschema, asciitree, zipp, tzdata, typing-extensions, traitlets, tornado, tinycss2, soupsieve, six, rpds-py, readthedocs-sphinx-search, pyzmq, pyyaml, prompt-toolkit, platformdirs, pexpect, parso, pandocfilters, numpy, natsort, mistune, mdurl, jupyterlab-pygments, fsspec, fasteners, executing, defusedxml, decorator, attrs, array-api-compat, accessible-pygments, scipy, referencing, python-dateutil, numcodecs, matplotlib-inline, markdown-it-py, jupyter-core, jedi, importlib-metadata, h5py, bleach, beautifulsoup4, awkward-cpp, asttokens, zarr, stack-data, sphinxext-opengraph, sphinx-issues, sphinx-design, sphinx-copybutton, sphinx-autodoc-typehints, scanpydoc, pydata-sphinx-theme, pandas, mdit-py-plugins, jupyter-client, jsonschema-specifications, awkward, sphinx-book-theme, myst-parser, jsonschema, ipython, anndata, nbformat, nbclient, nbconvert, nbsphinx Successfully installed accessible-pygments-0.0.4 anndata-0.11.0.dev85+g118d602 array-api-compat-1.4.1 asciitree-0.3.3 asttokens-2.4.1 attrs-23.2.0 awkward-2.6.1 awkward-cpp-29 beautifulsoup4-4.12.3 bleach-6.1.0 decorator-5.1.1 defusedxml-0.7.1 executing-2.0.1 fasteners-0.19 fastjsonschema-2.19.1 fsspec-2024.2.0 h5py-3.10.0 importlib-metadata-7.0.1 ipython-8.21.0 jedi-0.19.1 jsonschema-4.21.1 jsonschema-specifications-2023.12.1 jupyter-client-8.6.0 jupyter-core-5.7.1 jupyterlab-pygments-0.3.0 markdown-it-py-3.0.0 matplotlib-inline-0.1.6 mdit-py-plugins-0.4.0 mdurl-0.1.2 mistune-3.0.2 myst-parser-2.0.0 natsort-8.4.0 nbclient-0.9.0 nbconvert-7.16.0 nbformat-5.9.2 nbsphinx-0.9.3 numcodecs-0.12.1 numpy-1.26.4 pandas-2.2.0 pandocfilters-1.5.1 parso-0.8.3 pexpect-4.9.0 platformdirs-4.2.0 prompt-toolkit-3.0.43 ptyprocess-0.7.0 pure-eval-0.2.2 pydata-sphinx-theme-0.15.2 python-dateutil-2.8.2 pytz-2024.1 pyyaml-6.0.1 pyzmq-25.1.2 readthedocs-sphinx-search-0.3.2 referencing-0.33.0 rpds-py-0.18.0 scanpydoc-0.13.4 scipy-1.12.0 six-1.16.0 soupsieve-2.5 sphinx-autodoc-typehints-2.0.0 sphinx-book-theme-1.1.2 sphinx-copybutton-0.5.2 sphinx-design-0.5.0 sphinx-issues-4.0.0 sphinxext-opengraph-0.9.1 stack-data-0.6.3 tinycss2-1.2.1 tornado-6.4 traitlets-5.14.1 typing-extensions-4.9.0 tzdata-2024.1 wcwidth-0.2.13 webencodings-0.5.1 zarr-2.17.0 zipp-3.17.0 [rtd-command-info] start-time: 2024-02-16T12:48:10.336708Z, end-time: 2024-02-16T12:48:10.394474Z, duration: 0, exit-code: 0 cat docs/conf.py from __future__ import annotations import sys from datetime import datetime from importlib import metadata from pathlib import Path from typing import TYPE_CHECKING if TYPE_CHECKING: from sphinx.application import Sphinx HERE = Path(__file__).parent sys.path[:0] = [str(HERE / "extensions")] # -- General configuration ------------------------------------------------ # General information project = "anndata" author = f"{project} developers" copyright = f"{datetime.now():%Y}, {author}" release = version = metadata.version("anndata") # default settings templates_path = ["_templates"] html_static_path = ["_static"] source_suffix = [".rst", ".md"] master_doc = "index" default_role = "literal" exclude_patterns = [ "_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints", "tutorials/notebooks/*.rst", ] pygments_style = "sphinx" extensions = [ "myst_parser", "sphinx_copybutton", "sphinx.ext.autodoc", "sphinx.ext.intersphinx", "sphinx.ext.doctest", "sphinx.ext.coverage", "sphinx.ext.mathjax", "sphinx.ext.napoleon", "sphinx.ext.autosummary", "sphinx_autodoc_typehints", # needs to be after napoleon "sphinx_issues", "sphinx_design", "sphinx_search.extension", "sphinxext.opengraph", "scanpydoc", # needs to be before linkcode "sphinx.ext.linkcode", "nbsphinx", "IPython.sphinxext.ipython_console_highlighting", ] myst_enable_extensions = [ "html_image", # So README.md can be used on github and sphinx docs ] # Generate the API documentation when building autosummary_generate = True autodoc_member_order = "bysource" issues_github_path = "scverse/anndata" # autodoc_default_flags = ['members'] napoleon_google_docstring = False napoleon_numpy_docstring = True napoleon_include_init_with_doc = False napoleon_use_rtype = True # having a separate entry generally helps readability napoleon_use_param = True napoleon_custom_sections = [("Params", "Parameters")] typehints_defaults = "braces" todo_include_todos = False nitpicky = True # Report broken links nitpick_ignore = [ ("py:class", "scipy.sparse.base.spmatrix"), ("py:meth", "pandas.DataFrame.iloc"), ("py:meth", "pandas.DataFrame.loc"), ("py:class", "anndata._core.views.ArrayView"), ("py:class", "anndata._core.raw.Raw"), *[ ("py:class", f"anndata._core.aligned_mapping.{cls}{kind}") for cls in "Layers AxisArrays PairwiseArrays".split() for kind in ["", "View"] ], ] suppress_warnings = [ "ref.citation", "myst.header", # https://github.com/executablebooks/MyST-Parser/issues/262 ] def setup(app: Sphinx): # Don’t allow broken links. DO NOT CHANGE THIS LINE, fix problems instead. app.warningiserror = True intersphinx_mapping = dict( h5py=("https://docs.h5py.org/en/latest/", None), hdf5plugin=("https://hdf5plugin.readthedocs.io/en/latest/", None), loompy=("https://linnarssonlab.org/loompy/", None), numpy=("https://numpy.org/doc/stable/", None), pandas=("https://pandas.pydata.org/pandas-docs/stable/", None), python=("https://docs.python.org/3", None), scipy=("https://docs.scipy.org/doc/scipy/", None), sklearn=("https://scikit-learn.org/stable/", None), zarr=("https://zarr.readthedocs.io/en/stable/", None), xarray=("https://xarray.pydata.org/en/stable/", None), ) qualname_overrides = { "h5py._hl.group.Group": "h5py.Group", "h5py._hl.files.File": "h5py.File", "h5py._hl.dataset.Dataset": "h5py.Dataset", "anndata._core.anndata.AnnData": "anndata.AnnData", } # -- Social cards --------------------------------------------------------- ogp_site_url = "https://anndata.readthedocs.io/" ogp_image = "https://anndata.readthedocs.io/en/latest/_static/img/anndata_schema.svg" # -- Options for HTML output ---------------------------------------------- # The theme is sphinx-book-theme, with patches for readthedocs-sphinx-search html_theme = "scanpydoc" html_theme_options = dict( use_repository_button=True, repository_url="https://github.com/scverse/anndata", repository_branch="main", navigation_with_keys=False, # https://github.com/pydata/pydata-sphinx-theme/issues/1492 ) html_logo = "_static/img/anndata_schema.svg" issues_github_path = "scverse/anndata" html_show_sphinx = False # -- Options for other output formats ------------------------------------------ htmlhelp_basename = f"{project}doc" doc_title = f"{project} Documentation" latex_documents = [(master_doc, f"{project}.tex", doc_title, author, "manual")] man_pages = [(master_doc, project, doc_title, [author], 1)] texinfo_documents = [ ( master_doc, project, doc_title, author, project, "One line description of project.", "Miscellaneous", ) ] ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Define this variable in case it's not defined by the user. # It defaults to `alabaster` which is the default from Sphinx. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_theme html_theme = globals().get('html_theme', 'alabaster') #Add project information to the template context. context = { 'html_theme': html_theme, 'current_version': "1247", 'version_slug': "1247", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("0.10.x", "/en/0.10.x/"), ("0.9.x", "/en/0.9.x/"), ("0.8.x", "/en/0.8.x/"), ("0.7.x", "/en/0.7.x/"), ], 'downloads': [ ], 'subprojects': [ ], 'slug': 'icb-anndata', 'name': u'anndata', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': '', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'scverse', 'proxied_api_host': '/_', 'github_repo': 'anndata', 'github_version': '118d6024017b9141ff0c452f4d347d7400247da2', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': '118d6024017b9141ff0c452f4d347d7400247da2', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': '118d6024017b9141ff0c452f4d347d7400247da2', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '118d6024', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): for key in context: if key not in html_context: html_context[key] = context[key] else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'external' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'https://github.com/scverse/anndata/pull/1247' readthedocs_build_url = 'https://readthedocs.com/projects/icb-anndata/builds/2022267/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2024-02-16T12:48:10.466848Z, end-time: 2024-02-16T12:48:14.406521Z, duration: 3, exit-code: 2 python -m sphinx -T -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v7.2.6 matplotlib is not installed, social cards will not be generated making output directory... done myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'html_image'}, disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) loading intersphinx inventory from https://docs.h5py.org/en/latest/objects.inv... loading intersphinx inventory from https://hdf5plugin.readthedocs.io/en/latest/objects.inv... loading intersphinx inventory from https://linnarssonlab.org/loompy/objects.inv... loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... loading intersphinx inventory from https://pandas.pydata.org/pandas-docs/stable/objects.inv... loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.scipy.org/doc/scipy/objects.inv... loading intersphinx inventory from https://scikit-learn.org/stable/objects.inv... loading intersphinx inventory from https://zarr.readthedocs.io/en/stable/objects.inv... loading intersphinx inventory from https://xarray.pydata.org/en/stable/objects.inv... intersphinx inventory has moved: https://xarray.pydata.org/en/stable/objects.inv -> https://docs.xarray.dev/en/stable/objects.inv [autosummary] generating autosummary for: _key_contributors.rst, api.md, benchmark-read-write.ipynb, benchmarks.md, concatenation.rst, contributing.md, fileformat-prose.md, index.md, interoperability.md, news.md, ..., release-notes/index.md, release-notes/release-latest.md, tutorials/index.md, tutorials/notebooks/anncollection-annloader.ipynb, tutorials/notebooks/anncollection.ipynb, tutorials/notebooks/anndata_dask_array.ipynb, tutorials/notebooks/annloader.ipynb, tutorials/notebooks/awkward-arrays.ipynb, tutorials/notebooks/getting-started.ipynb, tutorials/notebooks/{read,write}_dispatched.ipynb Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages/sphinx/ext/autosummary/generate.py", line 503, in generate_autosummary_docs name, obj, parent, modname = import_by_name(entry.name) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages/sphinx/ext/autosummary/__init__.py", line 655, in import_by_name raise ImportExceptionGroup('no module named %s' % ' or '.join(tried), exceptions) sphinx.ext.autosummary.ImportExceptionGroup: no module named anndata.AnnData During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages/sphinx/events.py", line 97, in emit results.append(listener.handler(self.app, *args)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages/sphinx/ext/autosummary/__init__.py", line 814, in process_generate_options generate_autosummary_docs(genfiles, suffix=suffix, base_path=app.srcdir, File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages/sphinx/ext/autosummary/generate.py", line 508, in generate_autosummary_docs name, obj, parent, modname = import_ivar_by_name(entry.name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages/sphinx/ext/autosummary/__init__.py", line 712, in import_ivar_by_name real_name, obj, parent, modname = import_by_name(name, prefixes) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages/sphinx/ext/autosummary/__init__.py", line 655, in import_by_name raise ImportExceptionGroup('no module named %s' % ' or '.join(tried), exceptions) sphinx.ext.autosummary.ImportExceptionGroup: no module named anndata The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages/sphinx/cmd/build.py", line 293, in build_main app = Sphinx(args.sourcedir, args.confdir, args.outputdir, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages/sphinx/application.py", line 272, in __init__ self._init_builder() File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages/sphinx/application.py", line 343, in _init_builder self.events.emit('builder-inited') File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/1247/lib/python3.11/site-packages/sphinx/events.py", line 108, in emit raise ExtensionError(__("Handler %r for event %r threw an exception") % sphinx.errors.ExtensionError: Handler for event 'builder-inited' threw an exception (exception: no module named anndata) Extension error (sphinx.ext.autosummary): Handler for event 'builder-inited' threw an exception (exception: no module named anndata)