Read the Docs build information Build id: 198928 Project: tiledb-inc-tiledb-py Version: latest Commit: 655533797a989a1045c40da58f200c876ca724e2 Date: 2019-04-06T20:27:57.056079Z State: finished Success: False [rtd-command-info] start-time: 2019-04-06T20:27:57.678268Z, end-time: 2019-04-06T20:27:57.685565Z, duration: 0, exit-code: 0 git remote set-url origin https://github.com/TileDB-Inc/TileDB-Py.git [rtd-command-info] start-time: 2019-04-06T20:27:57.744774Z, end-time: 2019-04-06T20:27:58.127262Z, duration: 0, exit-code: 0 git fetch --tags --prune --prune-tags --depth 50 From https://github.com/TileDB-Inc/TileDB-Py fa7dc75..6555337 dev -> origin/dev * [new branch] ihn/pypi_linux -> origin/ihn/pypi_linux [rtd-command-info] start-time: 2019-04-06T20:27:58.389291Z, end-time: 2019-04-06T20:27:58.399949Z, duration: 0, exit-code: 0 git checkout --force origin/dev Previous HEAD position was fa7dc75 Try bumping RTD conda-env python version HEAD is now at 6555337 Allow native libtiledb to be imported from linkage [rtd-command-info] start-time: 2019-04-06T20:27:58.479602Z, end-time: 2019-04-06T20:27:58.488331Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-04-06T20:27:59.573844Z, end-time: 2019-04-06T20:29:23.975460Z, duration: 84, exit-code: 0 conda env create --quiet --name latest --file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/doc/source/conda-env.yml Solving environment: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [rtd-command-info] start-time: 2019-04-06T20:29:24.872789Z, end-time: 2019-04-06T20:29:42.517677Z, duration: 17, exit-code: 0 conda install --yes --quiet --name latest mock pillow sphinx sphinx_rtd_theme Solving environment: ...working... done ## Package Plan ## environment location: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest added / updated specs: - mock - pillow - sphinx - sphinx_rtd_theme The following packages will be downloaded: package | build ---------------------------|----------------- pillow-5.4.1 | py37h34e0f95_0 616 KB alabaster-0.7.12 | py37_0 17 KB pysocks-1.6.8 | py37_0 22 KB idna-2.8 | py37_0 101 KB libpng-1.6.36 | hbc83047_0 346 KB libtiff-4.0.10 | h2733197_2 604 KB babel-2.6.0 | py37_0 5.7 MB jpeg-9b | h024ee3a_2 248 KB pycparser-2.19 | py37_0 172 KB openssl-1.1.1b | h7b6447c_1 4.0 MB chardet-3.0.4 | py37_1 164 KB markupsafe-1.1.1 | py37h7b6447c_0 29 KB pbr-5.1.3 | py_0 74 KB asn1crypto-0.24.0 | py37_0 154 KB sphinx-1.8.5 | py37_0 1.9 MB cffi-1.12.2 | py37h2e261b9_1 222 KB urllib3-1.24.1 | py37_0 149 KB olefile-0.46 | py37_0 48 KB ca-certificates-2019.1.23 | 0 126 KB zstd-1.3.7 | h0b5b093_0 887 KB mock-2.0.0 | py37_0 104 KB sphinxcontrib-websupport-1.1.0| py37_1 36 KB pygments-2.3.1 | py37_0 1.3 MB pytz-2018.9 | py37_0 258 KB freetype-2.9.1 | h8a8886c_1 822 KB sphinxcontrib-1.0 | py37_1 3 KB pyopenssl-19.0.0 | py37_0 82 KB imagesize-1.1.0 | py37_0 9 KB certifi-2019.3.9 | py37_0 155 KB docutils-0.14 | py37_0 688 KB jinja2-2.10 | py37_0 183 KB requests-2.21.0 | py37_0 85 KB sphinx_rtd_theme-0.4.3 | py_0 5.1 MB cryptography-2.6.1 | py37h1ba5d50_0 616 KB snowballstemmer-1.2.1 | py37_0 82 KB ------------------------------------------------------------ Total: 24.9 MB The following NEW packages will be INSTALLED: alabaster: 0.7.12-py37_0 asn1crypto: 0.24.0-py37_0 babel: 2.6.0-py37_0 cffi: 1.12.2-py37h2e261b9_1 chardet: 3.0.4-py37_1 cryptography: 2.6.1-py37h1ba5d50_0 docutils: 0.14-py37_0 freetype: 2.9.1-h8a8886c_1 idna: 2.8-py37_0 imagesize: 1.1.0-py37_0 jinja2: 2.10-py37_0 jpeg: 9b-h024ee3a_2 libpng: 1.6.36-hbc83047_0 libtiff: 4.0.10-h2733197_2 markupsafe: 1.1.1-py37h7b6447c_0 mock: 2.0.0-py37_0 olefile: 0.46-py37_0 pbr: 5.1.3-py_0 pillow: 5.4.1-py37h34e0f95_0 pycparser: 2.19-py37_0 pygments: 2.3.1-py37_0 pyopenssl: 19.0.0-py37_0 pysocks: 1.6.8-py37_0 pytz: 2018.9-py37_0 requests: 2.21.0-py37_0 snowballstemmer: 1.2.1-py37_0 sphinx: 1.8.5-py37_0 sphinx_rtd_theme: 0.4.3-py_0 sphinxcontrib: 1.0-py37_1 sphinxcontrib-websupport: 1.1.0-py37_1 urllib3: 1.24.1-py37_0 zstd: 1.3.7-h0b5b093_0 The following packages will be UPDATED: certifi: 2019.3.9-py37_0 conda-forge --> 2019.3.9-py37_0 openssl: 1.1.1b-h14c3975_1 conda-forge --> 1.1.1b-h7b6447c_1 The following packages will be DOWNGRADED: ca-certificates: 2019.3.9-hecc5488_0 conda-forge --> 2019.1.23-0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [rtd-command-info] start-time: 2019-04-06T20:29:42.577423Z, end-time: 2019-04-06T20:29:44.290486Z, duration: 1, exit-code: 0 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/python -m pip install -U --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip recommonmark readthedocs-sphinx-ext Collecting recommonmark Using cached https://files.pythonhosted.org/packages/9b/3d/92ea48401622510e57b4bdaa74dc9db2fb9e9e892324b48f9c02d716a93a/recommonmark-0.5.0-py2.py3-none-any.whl Collecting readthedocs-sphinx-ext Using cached https://files.pythonhosted.org/packages/d1/f3/68de6af559ae681921a7b676a86c360454de67f3c8bd5327ae9352897ef4/readthedocs_sphinx_ext-0.5.17-py2.py3-none-any.whl Requirement already satisfied, skipping upgrade: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from recommonmark) (0.14) Requirement already satisfied, skipping upgrade: sphinx>=1.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from recommonmark) (1.8.5) Collecting commonmark>=0.7.3 (from recommonmark) Using cached https://files.pythonhosted.org/packages/ab/ca/439c88039583a29564a0043186875258e9a4f041fb5c422cd387b8e10175/commonmark-0.8.1-py2.py3-none-any.whl Requirement already satisfied, skipping upgrade: requests in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from readthedocs-sphinx-ext) (2.21.0) Requirement already satisfied, skipping upgrade: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from sphinx>=1.3.1->recommonmark) (1.12.0) Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from sphinx>=1.3.1->recommonmark) (2.10) Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from sphinx>=1.3.1->recommonmark) (2.3.1) Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from sphinx>=1.3.1->recommonmark) (1.2.1) Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from sphinx>=1.3.1->recommonmark) (2.6.0) Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from sphinx>=1.3.1->recommonmark) (0.7.12) Requirement already satisfied, skipping upgrade: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from sphinx>=1.3.1->recommonmark) (1.1.0) Requirement already satisfied, skipping upgrade: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from sphinx>=1.3.1->recommonmark) (40.9.0) Requirement already satisfied, skipping upgrade: packaging in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from sphinx>=1.3.1->recommonmark) (19.0) Requirement already satisfied, skipping upgrade: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from sphinx>=1.3.1->recommonmark) (1.1.0) Collecting future (from commonmark>=0.7.3->recommonmark) Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from requests->readthedocs-sphinx-ext) (3.0.4) Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from requests->readthedocs-sphinx-ext) (2019.3.9) Requirement already satisfied, skipping upgrade: urllib3<1.25,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from requests->readthedocs-sphinx-ext) (1.24.1) Requirement already satisfied, skipping upgrade: idna<2.9,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from requests->readthedocs-sphinx-ext) (2.8) Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx>=1.3.1->recommonmark) (1.1.1) Requirement already satisfied, skipping upgrade: pytz>=0a in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx>=1.3.1->recommonmark) (2018.9) Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages (from packaging->sphinx>=1.3.1->recommonmark) (2.3.1) Installing collected packages: future, commonmark, recommonmark, readthedocs-sphinx-ext Successfully installed commonmark-0.8.1 future-0.17.1 readthedocs-sphinx-ext-0.5.17 recommonmark-0.5.0 [rtd-command-info] start-time: 2019-04-06T20:29:44.348975Z, end-time: 2019-04-06T20:29:45.088242Z, duration: 0, exit-code: 1 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/python ./setup.py install --force cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by cmake) libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by cmake) libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/build... CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev'] /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/.eggs/setuptools_scm-3.2.0-py3.7.egg/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors warnings.warn('"%s" is shallow and may cause errors' % (wd.path,)) Traceback (most recent call last): File "./setup.py", line 503, in 'Programming Language :: Python :: 3.6', File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages/setuptools/__init__.py", line 145, in setup return distutils.core.setup(**attrs) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/distutils/core.py", line 148, in setup dist.run_commands() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages/setuptools/command/install.py", line 67, in run self.do_egg_install() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/site-packages/setuptools/command/install.py", line 109, in do_egg_install self.run_command('bdist_egg') File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "./setup.py", line 362, in run find_or_install_libtiledb(self) File "./setup.py", line 227, in find_or_install_libtiledb install_dir = build_libtiledb(src_dir) File "./setup.py", line 201, in build_libtiledb subprocess.check_call(cmake_cmd, cwd=libtiledb_build_dir) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.7/subprocess.py", line 347, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-dev']' returned non-zero exit status 1.