Read the Docs build information Build id: 198698 Project: tiledb-inc-tiledb-py Version: stable Commit: 63fd834597f2b3b406b0c75fee7cf1038d2079e0 Date: 2019-04-05T13:12:33.947431Z State: finished Success: False [rtd-command-info] start-time: 2019-04-05T13:13:21.520057Z, end-time: 2019-04-05T13:13:21.944399Z, duration: 0, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2019-04-05T13:13:22.154339Z, end-time: 2019-04-05T13:13:22.170352Z, duration: 0, exit-code: 0 git checkout --force 63fd834597f2b3b406b0c75fee7cf1038d2079e0 Note: checking out '63fd834597f2b3b406b0c75fee7cf1038d2079e0'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 63fd834 Release 0.4 against TileDB 1.5 [rtd-command-info] start-time: 2019-04-05T13:13:22.253153Z, end-time: 2019-04-05T13:13:22.260994Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-04-05T13:13:22.951671Z, end-time: 2019-04-05T13:14:48.881803Z, duration: 85, exit-code: 0 conda env create --quiet --name stable --file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/doc/source/conda-env.yml Solving environment: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [rtd-command-info] start-time: 2019-04-05T13:14:48.987010Z, end-time: 2019-04-05T13:15:08.086653Z, duration: 19, exit-code: 0 conda install --yes --quiet --name stable mock pillow sphinx sphinx_rtd_theme Solving environment: ...working... done ## Package Plan ## environment location: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable added / updated specs: - mock - pillow - sphinx - sphinx_rtd_theme The following packages will be downloaded: package | build ---------------------------|----------------- pyopenssl-18.0.0 | py35_0 82 KB imagesize-1.1.0 | py35_0 9 KB babel-2.6.0 | py35_0 5.7 MB sphinxcontrib-1.0 | py35_1 3 KB zstd-1.3.7 | h0b5b093_0 887 KB cffi-1.11.5 | py35he75722e_1 213 KB libpng-1.6.36 | hbc83047_0 346 KB cryptography-2.3.1 | py35hc365091_0 585 KB idna-2.7 | py35_0 133 KB libtiff-4.0.10 | h2733197_2 604 KB sphinxcontrib-websupport-1.1.0| py35_1 36 KB jpeg-9b | h024ee3a_2 248 KB snowballstemmer-1.2.1 | py35h5435977_0 84 KB asn1crypto-0.24.0 | py35_0 156 KB pbr-5.1.3 | py_0 74 KB chardet-3.0.4 | py35_1 191 KB pygments-2.2.0 | py35h0f41973_0 1.3 MB sphinx-1.7.9 | py35_0 1.6 MB pycparser-2.19 | py35_0 175 KB markupsafe-1.0 | py35h14c3975_1 25 KB ca-certificates-2019.1.23 | 0 126 KB certifi-2018.8.24 | py35_1 139 KB pysocks-1.6.8 | py35_0 22 KB openssl-1.0.2r | h7b6447c_0 3.2 MB freetype-2.9.1 | h8a8886c_1 822 KB pytz-2018.5 | py35_0 231 KB requests-2.19.1 | py35_0 97 KB pillow-5.2.0 | py35heded4f4_0 589 KB jinja2-2.10 | py35_0 181 KB docutils-0.14 | py35hd11081d_0 702 KB mock-2.0.0 | py35h70ca42c_0 105 KB urllib3-1.23 | py35_0 153 KB alabaster-0.7.11 | py35_0 16 KB sphinx_rtd_theme-0.4.3 | py_0 5.1 MB olefile-0.46 | py35_0 48 KB ------------------------------------------------------------ Total: 23.8 MB The following NEW packages will be INSTALLED: alabaster: 0.7.11-py35_0 asn1crypto: 0.24.0-py35_0 babel: 2.6.0-py35_0 cffi: 1.11.5-py35he75722e_1 chardet: 3.0.4-py35_1 cryptography: 2.3.1-py35hc365091_0 docutils: 0.14-py35hd11081d_0 freetype: 2.9.1-h8a8886c_1 idna: 2.7-py35_0 imagesize: 1.1.0-py35_0 jinja2: 2.10-py35_0 jpeg: 9b-h024ee3a_2 libpng: 1.6.36-hbc83047_0 libtiff: 4.0.10-h2733197_2 markupsafe: 1.0-py35h14c3975_1 mock: 2.0.0-py35h70ca42c_0 olefile: 0.46-py35_0 pbr: 5.1.3-py_0 pillow: 5.2.0-py35heded4f4_0 pycparser: 2.19-py35_0 pygments: 2.2.0-py35h0f41973_0 pyopenssl: 18.0.0-py35_0 pysocks: 1.6.8-py35_0 pytz: 2018.5-py35_0 requests: 2.19.1-py35_0 snowballstemmer: 1.2.1-py35h5435977_0 sphinx: 1.7.9-py35_0 sphinx_rtd_theme: 0.4.3-py_0 sphinxcontrib: 1.0-py35_1 sphinxcontrib-websupport: 1.1.0-py35_1 urllib3: 1.23-py35_0 zstd: 1.3.7-h0b5b093_0 The following packages will be UPDATED: openssl: 1.0.2r-h14c3975_0 conda-forge --> 1.0.2r-h7b6447c_0 The following packages will be DOWNGRADED: ca-certificates: 2019.3.9-hecc5488_0 conda-forge --> 2019.1.23-0 certifi: 2018.8.24-py35_1001 conda-forge --> 2018.8.24-py35_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [rtd-command-info] start-time: 2019-04-05T13:15:08.148163Z, end-time: 2019-04-05T13:15:11.177096Z, duration: 3, exit-code: 0 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/bin/python -m pip install -U --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip recommonmark readthedocs-sphinx-ext Collecting recommonmark Downloading https://files.pythonhosted.org/packages/9b/3d/92ea48401622510e57b4bdaa74dc9db2fb9e9e892324b48f9c02d716a93a/recommonmark-0.5.0-py2.py3-none-any.whl Collecting readthedocs-sphinx-ext Downloading https://files.pythonhosted.org/packages/d1/f3/68de6af559ae681921a7b676a86c360454de67f3c8bd5327ae9352897ef4/readthedocs_sphinx_ext-0.5.17-py2.py3-none-any.whl Collecting commonmark>=0.7.3 (from recommonmark) Downloading https://files.pythonhosted.org/packages/ab/ca/439c88039583a29564a0043186875258e9a4f041fb5c422cd387b8e10175/commonmark-0.8.1-py2.py3-none-any.whl (47kB) Requirement already satisfied, skipping upgrade: sphinx>=1.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from recommonmark) (1.7.9) Requirement already satisfied, skipping upgrade: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from recommonmark) (0.14) Requirement already satisfied, skipping upgrade: requests in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from readthedocs-sphinx-ext) (2.19.1) Collecting future (from commonmark>=0.7.3->recommonmark) Downloading https://files.pythonhosted.org/packages/90/52/e20466b85000a181e1e144fd8305caf2cf475e2f9674e797b222f8105f5f/future-0.17.1.tar.gz (829kB) Requirement already satisfied, skipping upgrade: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.11.0) Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (2.10) Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (2.2.0) Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.2.1) Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (2.6.0) Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (0.7.11) Requirement already satisfied, skipping upgrade: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.1.0) Requirement already satisfied, skipping upgrade: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (40.4.3) Requirement already satisfied, skipping upgrade: packaging in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (19.0) Requirement already satisfied, skipping upgrade: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.1.0) Requirement already satisfied, skipping upgrade: urllib3<1.24,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (1.23) Requirement already satisfied, skipping upgrade: idna<2.8,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (2.7) Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (2018.8.24) Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (3.0.4) Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from Jinja2>=2.3->sphinx>=1.3.1->recommonmark) (1.0) Requirement already satisfied, skipping upgrade: pytz>=0a in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from babel!=2.0,>=1.3->sphinx>=1.3.1->recommonmark) (2018.5) Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages (from packaging->sphinx>=1.3.1->recommonmark) (2.3.1) Building wheels for collected packages: future Running setup.py bdist_wheel for future: started Running setup.py bdist_wheel for future: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip/wheels/0c/61/d2/d6b7317325828fbb39ee6ad559dbe4664d0896da4721bf379e Successfully built future Installing collected packages: future, commonmark, recommonmark, readthedocs-sphinx-ext Successfully installed commonmark-0.8.1 future-0.17.1 readthedocs-sphinx-ext-0.5.17 recommonmark-0.5.0 [rtd-command-info] start-time: 2019-04-05T13:15:11.239395Z, end-time: 2019-04-05T13:15:20.867598Z, duration: 9, exit-code: 1 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/bin/python ./setup.py install --force cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/bin/../lib/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by cmake) libtiledb_exists checking 'library_dirs': [] running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/bin/../lib/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by cmake) libtiledb_exists checking 'library_dirs': [] Downloading TileDB package from 1.5.0... Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.5.0/build... CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.5.0/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.5.0'] /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/.eggs/setuptools_scm-3.2.0-py3.5.egg/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable" is shallow and may cause errors warnings.warn('"%s" is shallow and may cause errors' % (wd.path,)) Traceback (most recent call last): File "./setup.py", line 482, in 'Programming Language :: Python :: 3.6', File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages/setuptools/__init__.py", line 140, in setup return distutils.core.setup(**attrs) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/distutils/core.py", line 148, in setup dist.run_commands() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/distutils/dist.py", line 955, in run_commands self.run_command(cmd) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages/setuptools/command/install.py", line 67, in run self.do_egg_install() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/site-packages/setuptools/command/install.py", line 109, in do_egg_install self.run_command('bdist_egg') File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/distutils/dist.py", line 974, in run_command cmd_obj.run() File "./setup.py", line 343, in run find_or_install_libtiledb(self) File "./setup.py", line 208, in find_or_install_libtiledb install_dir = build_libtiledb(src_dir) File "./setup.py", line 182, in build_libtiledb subprocess.check_call(cmake_cmd, cwd=libtiledb_build_dir) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/stable/lib/python3.5/subprocess.py", line 271, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.5.0/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-1.5.0']' returned non-zero exit status 1