Read the Docs build information Build id: 1974284 Project: institute-for-disease-modeling-emod-api Version: latest Commit: 0453262b441f7cbff7de2916f7101056ea11ca18 Date: 2024-01-26T00:09:14.582588Z State: finished Success: True [rtd-command-info] start-time: 2024-01-26T00:09:59.899697Z, end-time: 2024-01-26T00:10:03.515141Z, duration: 3, exit-code: 0 git clone --depth 1 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. [rtd-command-info] start-time: 2024-01-26T00:10:03.590681Z, end-time: 2024-01-26T00:10:05.257479Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. From github.com:InstituteforDiseaseModeling/emod-api * [new tag] 1.1.0 -> 1.1.0 * [new tag] v.1.2.4 -> v.1.2.4 * [new tag] v1.10.2 -> v1.10.2 * [new tag] v1.10.3 -> v1.10.3 * [new tag] v1.10.5 -> v1.10.5 * [new tag] v1.10.6 -> v1.10.6 * [new tag] v1.10.8 -> v1.10.8 * [new tag] v1.11.0 -> v1.11.0 * [new tag] v1.11.4 -> v1.11.4 * [new tag] v1.11.7 -> v1.11.7 * [new tag] v1.12.1 -> v1.12.1 * [new tag] v1.13.1 -> v1.13.1 * [new tag] v1.14.1 -> v1.14.1 * [new tag] v1.14.7 -> v1.14.7 * [new tag] v1.15.1 -> v1.15.1 * [new tag] v1.15.4 -> v1.15.4 * [new tag] v1.15.6 -> v1.15.6 * [new tag] v1.16.10 -> v1.16.10 * [new tag] v1.16.2 -> v1.16.2 * [new tag] v1.16.5 -> v1.16.5 * [new tag] v1.17.2 -> v1.17.2 * [new tag] v1.17.3 -> v1.17.3 * [new tag] v1.17.4 -> v1.17.4 * [new tag] v1.18.1 -> v1.18.1 * [new tag] v1.19.13 -> v1.19.13 * [new tag] v1.19.2 -> v1.19.2 * [new tag] v1.2.0 -> v1.2.0 * [new tag] v1.2.2 -> v1.2.2 * [new tag] v1.2.3 -> v1.2.3 * [new tag] v1.20.1 -> v1.20.1 * [new tag] v1.20.2 -> v1.20.2 * [new tag] v1.21.1 -> v1.21.1 * [new tag] v1.22.1 -> v1.22.1 * [new tag] v1.22.10 -> v1.22.10 * [new tag] v1.22.11 -> v1.22.11 * [new tag] v1.22.9 -> v1.22.9 * [new tag] v1.23.1 -> v1.23.1 * [new tag] v1.23.2 -> v1.23.2 * [new tag] v1.24.1 -> v1.24.1 * [new tag] v1.24.11 -> v1.24.11 * [new tag] v1.24.8 -> v1.24.8 * [new tag] v1.25.1 -> v1.25.1 * [new tag] v1.26.1 -> v1.26.1 * [new tag] v1.27.1 -> v1.27.1 * [new tag] v1.27.4 -> v1.27.4 * [new tag] v1.28.1 -> v1.28.1 * [new tag] v1.28.5 -> v1.28.5 * [new tag] v1.29.6 -> v1.29.6 * [new tag] v1.3.0 -> v1.3.0 * [new tag] v1.30.1 -> v1.30.1 * [new tag] v1.4.0 -> v1.4.0 * [new tag] v1.5.0 -> v1.5.0 * [new tag] v1.5.1 -> v1.5.1 * [new tag] v1.6.3 -> v1.6.3 * [new tag] v1.7.1 -> v1.7.1 * [new tag] v1.7.4 -> v1.7.4 * [new tag] v1.7.5 -> v1.7.5 * [new tag] v1.8.2 -> v1.8.2 * [new tag] v1.8.6 -> v1.8.6 * [new tag] v1.8.8 -> v1.8.8 * [new tag] v1.8.9 -> v1.8.9 * [new tag] v1.9.1 -> v1.9.1 * [new tag] v1.9.2 -> v1.9.2 [rtd-command-info] start-time: 2024-01-26T00:10:05.332515Z, end-time: 2024-01-26T00:10:05.392462Z, duration: 0, exit-code: 0 cat .readthedocs.yml # .readthedocs.yml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Set the version of Python and other tools you might need build: os: ubuntu-20.04 tools: python: "3.9" # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py fail_on_warning: true # Build documentation with MkDocs #mkdocs: # configuration: mkdocs.yml # Optionally build your docs in additional formats such as PDF formats: - htmlzip # Optionally set the version of Python and requirements required to build your docs python: install: - requirements: requirements.txt - requirements: docs/requirements.txt - method: setuptools path: . # Optionally rank topics in search results, between -10 (lower) and 10 (higher). # 0 is normal rank, not no rank # search: # ranking: [rtd-command-info] start-time: 2024-01-26T00:10:11.785642Z, end-time: 2024-01-26T00:10:11.859083Z, duration: 0, exit-code: 0 asdf global python 3.9.18 [rtd-command-info] start-time: 2024-01-26T00:10:12.215420Z, end-time: 2024-01-26T00:10:13.425610Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.9.18.final.0-64 in 856ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2024-01-26T00:10:13.490489Z, end-time: 2024-01-26T00:10:23.139624Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (23.1) Collecting pip Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/15/aa/3f4c7bcee2057a76562a5b33ecbd199be08cdb4443a02e26bd2c3cf6fc39/pip-23.3.2-py3-none-any.whl (2.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 17.5 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (67.6.1) Collecting setuptools Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/55/3a/5121b58b578a598b269537e09a316ad2a94fdd561a2c6eb75cd68578cc6b/setuptools-69.0.3-py3-none-any.whl (819 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 819.5/819.5 kB 20.4 MB/s eta 0:00:00 Installing collected packages: setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 67.6.1 Uninstalling setuptools-67.6.1: Successfully uninstalled setuptools-67.6.1 Attempting uninstall: pip Found existing installation: pip 23.1 Uninstalling pip-23.1: Successfully uninstalled pip-23.1 Successfully installed pip-23.3.2 setuptools-69.0.3 [rtd-command-info] start-time: 2024-01-26T00:10:23.202211Z, end-time: 2024-01-26T00:10:32.608037Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir sphinx readthedocs-sphinx-ext Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Collecting sphinx Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b2/b6/8ed35256aa530a9d3da15d20bdc0ba888d5364441bb50a5a83ee7827affe/sphinx-7.2.6-py3-none-any.whl (3.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.2/3.2 MB 18.5 MB/s eta 0:00:00 Collecting readthedocs-sphinx-ext Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/64/71/c89e7709a0d4f93af1848e9855112299a820b470d84f917b4dd5998bdd07/readthedocs_sphinx_ext-2.2.5-py2.py3-none-any.whl (11 kB) Collecting sphinxcontrib-applehelp (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/56/89/fea3fbf6785b388e6cb8a1beaf62f96e80b37311bdeed6e133388a732426/sphinxcontrib_applehelp-1.0.8-py3-none-any.whl (120 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 120.0/120.0 kB 206.7 MB/s eta 0:00:00 Collecting sphinxcontrib-devhelp (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a0/52/1049d918d1d1c72857d285c3f0c64c1cbe0be394ce1c93a3d2aa4f39fe3b/sphinxcontrib_devhelp-1.0.6-py3-none-any.whl (83 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 83.5/83.5 kB 189.3 MB/s eta 0:00:00 Collecting sphinxcontrib-jsmath (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c2/42/4c8646762ee83602e3fb3fbe774c2fac12f317deb0b5dbeeedd2d3ba4b77/sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c2/e9/74c4cda5b409af3222fda38f0774e616011bc935f639dbc0da5ca2d1be7d/sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl (99 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 99.2/99.2 kB 199.4 MB/s eta 0:00:00 Collecting sphinxcontrib-serializinghtml>=1.1.9 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/38/24/228bb903ea87b9e08ab33470e6102402a644127108c7117ac9c00d849f82/sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl (92 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 92.7/92.7 kB 198.2 MB/s eta 0:00:00 Collecting sphinxcontrib-qthelp (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/80/b3/1beac14a88654d2e5120d0143b49be5ad450b86eb1963523d8dbdcc51eb2/sphinxcontrib_qthelp-1.0.7-py3-none-any.whl (89 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 89.4/89.4 kB 179.2 MB/s eta 0:00:00 Collecting Jinja2>=3.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/30/6d/6de6be2d02603ab56e72997708809e8a5b0fbfee080735109b40a3564843/Jinja2-3.1.3-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.2/133.2 kB 24.6 MB/s eta 0:00:00 Collecting Pygments>=2.14 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/97/9c/372fef8377a6e340b1704768d20daaded98bf13282b5327beb2e2fe2c7ef/pygments-2.17.2-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 19.1 MB/s eta 0:00:00 Collecting docutils<0.21,>=0.18.1 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/26/87/f238c0670b94533ac0353a4e2a1a771a0cc73277b88bff23d3ae35a256c1/docutils-0.20.1-py3-none-any.whl (572 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 572.7/572.7 kB 19.5 MB/s eta 0:00:00 Collecting snowballstemmer>=2.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ed/dc/c02e01294f7265e63a7315fe086dd1df7dacb9f840a804da846b96d01b96/snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 192.5 MB/s eta 0:00:00 Collecting babel>=2.9 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0d/35/4196b21041e29a42dc4f05866d0c94fa26c9da88ce12c38c2265e42c82fb/Babel-2.14.0-py3-none-any.whl (11.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.0/11.0 MB 18.6 MB/s eta 0:00:00 Collecting alabaster<0.8,>=0.7 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/32/34/d4e1c02d3bee589efb5dfa17f88ea08bdb3e3eac12bc475462aec52ed223/alabaster-0.7.16-py3-none-any.whl (13 kB) Collecting imagesize>=1.3 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ff/62/85c4c919272577931d407be5ba5d71c20f0b616d31a0befe0ae45bb79abd/imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting requests>=2.25.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/70/8e/0e2d847013cb52cd35b38c009bb167a1a26b2ce6cd6965bf26b47bc0bf44/requests-2.31.0-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.6/62.6 kB 185.9 MB/s eta 0:00:00 Collecting packaging>=21.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ec/1a/610693ac4ee14fcdf2d9bf3c493370e4f2ef7ae2e19217d7a237ff42367d/packaging-23.2-py3-none-any.whl (53 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 53.0/53.0 kB 167.6 MB/s eta 0:00:00 Collecting importlib-metadata>=4.8 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c0/8b/d8427f023c081a8303e6ac7209c16e6878f2765d5b59667f3903fbcfd365/importlib_metadata-7.0.1-py3-none-any.whl (23 kB) Collecting zipp>=0.5 (from importlib-metadata>=4.8->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d9/66/48866fc6b158c81cc2bfecc04c480f105c6040e8b077bc54c634b4a67926/zipp-3.17.0-py3-none-any.whl (7.4 kB) Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1a/3c/ca3094664ce3126145cc28b61bb37253d9f1614c9d8bbfa358ac7fc472c0/MarkupSafe-2.1.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.25.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/98/69/5d8751b4b670d623aa7a47bef061d69c279e9f922f6705147983aa76c3ce/charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 142.3/142.3 kB 25.8 MB/s eta 0:00:00 Collecting idna<4,>=2.5 (from requests>=2.25.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c2/e7/a82b05cf63a603df6e68d59ae6a68bf5064484a0718ea5033660af4b54a9/idna-3.6-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.6/61.6 kB 168.9 MB/s eta 0:00:00 Collecting urllib3<3,>=1.21.1 (from requests>=2.25.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/96/94/c31f58c7a7f470d5665935262ebd7455c7e4c7782eb525658d3dbf4b9403/urllib3-2.1.0-py3-none-any.whl (104 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 104.6/104.6 kB 206.3 MB/s eta 0:00:00 Collecting certifi>=2017.4.17 (from requests>=2.25.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/64/62/428ef076be88fa93716b576e4a01f919d25968913e817077a386fcbe4f42/certifi-2023.11.17-py3-none-any.whl (162 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 162.5/162.5 kB 20.9 MB/s eta 0:00:00 Installing collected packages: snowballstemmer, zipp, urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, importlib-metadata, sphinx, readthedocs-sphinx-ext Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.4 Pygments-2.17.2 alabaster-0.7.16 babel-2.14.0 certifi-2023.11.17 charset-normalizer-3.3.2 docutils-0.20.1 idna-3.6 imagesize-1.4.1 importlib-metadata-7.0.1 packaging-23.2 readthedocs-sphinx-ext-2.2.5 requests-2.31.0 snowballstemmer-2.2.0 sphinx-7.2.6 sphinxcontrib-applehelp-1.0.8 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.5 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 urllib3-2.1.0 zipp-3.17.0 [rtd-command-info] start-time: 2024-01-26T00:10:32.714546Z, end-time: 2024-01-26T00:11:07.937883Z, duration: 35, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Collecting numpy!=1.19.4 (from -r requirements.txt (line 1)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ea/ee/7a93594b78d7834d14ff49e74ba79e3f26b85604a542a790db81b1dd2326/numpy-1.26.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 18.0 MB/s eta 0:00:00 Collecting pyyaml (from -r requirements.txt (line 2)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7d/39/472f2554a0f1e825bd7c5afc11c817cd7a2f3657460f7159f691fbb37c51/PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 738.9/738.9 kB 21.5 MB/s eta 0:00:00 Collecting pandas (from -r requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/df/bc/663c52528d6b2c796d0f788655e5f0fd65842523715a18f4d4beaca8dcb2/pandas-2.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.0/13.0 MB 18.5 MB/s eta 0:00:00 Collecting scipy (from -r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a6/9d/f864266894b67cdb5731ab531afba68713da3d6d8252f698ccab775d3f68/scipy-1.12.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (38.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 38.5/38.5 MB 18.7 MB/s eta 0:00:00 Collecting shapely (from -r requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0b/45/72b2f6c9c02e02d73edeb3e63cb724e5a67f84d1ecadb06a2309a2c022a9/shapely-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.5/2.5 MB 19.1 MB/s eta 0:00:00 Collecting pyproj (from -r requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/97/0a/b1525be9680369cc06dd288e12c59d24d5798b4afcdcf1b0915836e1caa6/pyproj-3.6.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.3/8.3 MB 18.8 MB/s eta 0:00:00 Collecting geographiclib (from -r requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9f/5a/a26132406f1f40cf51ea349a5f11b0a46cec02a2031ff82e391c2537247a/geographiclib-2.0-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.3/40.3 kB 165.1 MB/s eta 0:00:00 Collecting scikit-learn (from -r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ec/e6/5f9929a0ca90e2726bdd709c4cca67af8d45bce92cefc3c5ef743aa0e9d5/scikit_learn-1.4.0-1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.1/12.1 MB 18.7 MB/s eta 0:00:00 Collecting lz4 (from -r requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/10/39/baa1138796c410449ec1d8942cd8105c1ed41745e2b16f64dbe02ff10ee3/lz4-4.3.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 19.5 MB/s eta 0:00:00 Collecting prodict (from -r requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/5a/0b/594c85ac539dda877198e7d5541982127d0929e3b0e8e6018004cfbd9ac9/prodict-0.8.18.tar.gz (4.2 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting graphviz (from -r requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/de/5e/fcbb22c68208d39edff467809d06c9d81d7d27426460ebc598e55130c1aa/graphviz-0.20.1-py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.0/47.0 kB 156.2 MB/s eta 0:00:00 Collecting parse (from -r requirements.txt (line 12)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/27/da/2c9c45c3cca6ef6ebf8b4974bf211b523ad8064a315448372f3088a2193e/parse-1.20.0-py2.py3-none-any.whl (19 kB) Collecting matplotlib (from -r requirements.txt (line 13)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/53/1f/653d60d2ec81a6095fa3e571cf2de57742bab8a51a5c01de26730ce3dc53/matplotlib-3.8.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.6/11.6 MB 18.7 MB/s eta 0:00:00 Collecting python-dateutil>=2.8.2 (from pandas->-r requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/36/7a/87837f39d0296e723bb9b62bbb257d0355c7f6128853c78955f57342a56d/python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 247.7/247.7 kB 29.4 MB/s eta 0:00:00 Collecting pytz>=2020.1 (from pandas->-r requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/32/4d/aaf7eff5deb402fd9a24a1449a8119f00d74ae9c2efa79f8ef9994261fc2/pytz-2023.3.post1-py2.py3-none-any.whl (502 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 502.5/502.5 kB 22.1 MB/s eta 0:00:00 Collecting tzdata>=2022.7 (from pandas->-r requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a3/fb/52b62131e21b24ee297e4e95ed41eba29647dad0e0051a92bb66b43c70ff/tzdata-2023.4-py2.py3-none-any.whl (346 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 346.6/346.6 kB 22.7 MB/s eta 0:00:00 Requirement already satisfied: certifi in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from pyproj->-r requirements.txt (line 6)) (2023.11.17) Collecting joblib>=1.2.0 (from scikit-learn->-r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/10/40/d551139c85db202f1f384ba8bcf96aca2f329440a844f924c8a0040b6d02/joblib-1.3.2-py3-none-any.whl (302 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 302.2/302.2 kB 20.3 MB/s eta 0:00:00 Collecting threadpoolctl>=2.0.0 (from scikit-learn->-r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/81/12/fd4dea011af9d69e1cad05c75f3f7202cdcbeac9b712eea58ca779a72865/threadpoolctl-3.2.0-py3-none-any.whl (15 kB) Collecting contourpy>=1.0.1 (from matplotlib->-r requirements.txt (line 13)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a9/ba/d8fd1380876f1e9114157606302e3644c85f6d116aeba354c212ee13edc7/contourpy-1.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (310 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 311.0/311.0 kB 20.9 MB/s eta 0:00:00 Collecting cycler>=0.10 (from matplotlib->-r requirements.txt (line 13)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e7/05/c19819d5e3d95294a6f5947fb9b9629efb316b96de511b418c53d245aae6/cycler-0.12.1-py3-none-any.whl (8.3 kB) Collecting fonttools>=4.22.0 (from matplotlib->-r requirements.txt (line 13)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/de/64/dddc0df6a9a958dc76ed75b820de3773a06695af30ffb2f4116fe4640404/fonttools-4.47.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 18.7 MB/s eta 0:00:00 Collecting kiwisolver>=1.3.1 (from matplotlib->-r requirements.txt (line 13)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c0/a8/841594f11d0b88d8aeb26991bc4dac38baa909dc58d0c4262a4f7893bcbf/kiwisolver-1.4.5-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 18.9 MB/s eta 0:00:00 Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from matplotlib->-r requirements.txt (line 13)) (23.2) Collecting pillow>=8 (from matplotlib->-r requirements.txt (line 13)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/87/0d/8f5136a5481731c342a901ff155c587ce7804114db069345e1894ab4978a/pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 18.8 MB/s eta 0:00:00 Collecting pyparsing>=2.3.1 (from matplotlib->-r requirements.txt (line 13)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/39/92/8486ede85fcc088f1b3dba4ce92dd29d126fd96b0008ea213167940a2475/pyparsing-3.1.1-py3-none-any.whl (103 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 103.1/103.1 kB 209.4 MB/s eta 0:00:00 Collecting importlib-resources>=3.2.0 (from matplotlib->-r requirements.txt (line 13)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/93/e8/facde510585869b5ec694e8e0363ffe4eba067cb357a8398a55f6a1f8023/importlib_resources-6.1.1-py3-none-any.whl (33 kB) Requirement already satisfied: zipp>=3.1.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from importlib-resources>=3.2.0->matplotlib->-r requirements.txt (line 13)) (3.17.0) Collecting six>=1.5 (from python-dateutil>=2.8.2->pandas->-r requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d9/5a/e7c31adbe875f2abbb91bd84cf2dc52d792b5a01506781dbcf25c91daf11/six-1.16.0-py2.py3-none-any.whl (11 kB) Building wheels for collected packages: prodict Building wheel for prodict (setup.py): started Building wheel for prodict (setup.py): finished with status 'done' Created wheel for prodict: filename=prodict-0.8.18-py3-none-any.whl size=4203 sha256=ceef00c29c4ed2f40c06fa388480b8dffdf20a993f9de1d3cd43b80f03270163 Stored in directory: /tmp/pip-ephem-wheel-cache-a9vzi8lz/wheels/b0/9c/b9/694dc9fa35b338adf315c91781d2150a3bccd224174d897720 Successfully built prodict Installing collected packages: pytz, prodict, parse, tzdata, threadpoolctl, six, pyyaml, pyproj, pyparsing, pillow, numpy, lz4, kiwisolver, joblib, importlib-resources, graphviz, geographiclib, fonttools, cycler, shapely, scipy, python-dateutil, contourpy, scikit-learn, pandas, matplotlib Successfully installed contourpy-1.2.0 cycler-0.12.1 fonttools-4.47.2 geographiclib-2.0 graphviz-0.20.1 importlib-resources-6.1.1 joblib-1.3.2 kiwisolver-1.4.5 lz4-4.3.3 matplotlib-3.8.2 numpy-1.26.3 pandas-2.2.0 parse-1.20.0 pillow-10.2.0 prodict-0.8.18 pyparsing-3.1.1 pyproj-3.6.1 python-dateutil-2.8.2 pytz-2023.3.post1 pyyaml-6.0.1 scikit-learn-1.4.0 scipy-1.12.0 shapely-2.0.2 six-1.16.0 threadpoolctl-3.2.0 tzdata-2023.4 [rtd-command-info] start-time: 2024-01-26T00:11:08.013685Z, end-time: 2024-01-26T00:11:42.426499Z, duration: 34, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Collecting sphinx~=6.2 (from -r docs/requirements.txt (line 1)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/5f/d8/45ba6097c39ba44d9f0e1462fb232e13ca4ddb5aea93a385dcfa964687da/sphinx-6.2.1-py3-none-any.whl (3.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.0/3.0 MB 18.5 MB/s eta 0:00:00 Collecting sphinx-rtd-theme~=1.3 (from -r docs/requirements.txt (line 2)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/18/01/76f40a18e9209bb098c1c1313c823dbbd001b23a2db71e7fd4eb5a48559c/sphinx_rtd_theme-1.3.0-py2.py3-none-any.whl (2.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 18.1 MB/s eta 0:00:00 Collecting sphinxcontrib-napoleon~=0.7 (from -r docs/requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/75/f2/6b7627dfe7b4e418e295e254bb15c3a6455f11f8c0ad0d43113f678049c3/sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting plantweb~=1.2.1 (from -r docs/requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d6/6f/9ab1a1c3e33aaa0c0931983578c09336b092c75dce777ea666d3032f756e/plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.17 (from -r docs/requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/30/ee/b7be4b3f45f4e36bfa6c444cd234098e0d09880379c67a43e6bb9ab99a86/sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting nbsphinx~=0.9 (from -r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a3/a0/ca4aeb2f7f2608a483459a3bb486da250a7eb23eb76c9a0af154395f0cb2/nbsphinx-0.9.3-py3-none-any.whl (31 kB) Collecting jupyterlab~=4.0 (from -r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3c/e1/824088b7eed57a38bf20c5ef0363a0e4554d2d824571d60f8bc2460b0c94/jupyterlab-4.0.11-py3-none-any.whl (9.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.2/9.2 MB 18.5 MB/s eta 0:00:00 Collecting myst-parser~=2.0 (from -r docs/requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1d/f6/6d61a023d758f488e36638076e8a4ec4447a2cdf86938cf6c60cf1c860e6/myst_parser-2.0.0-py3-none-any.whl (77 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.2/77.2 kB 186.5 MB/s eta 0:00:00 Collecting readthedocs-sphinx-search~=0.3 (from -r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/04/3c/41bc9d7d4d936a73e380423f23996bee1691e17598d8a03c062be6aac640/readthedocs_sphinx_search-0.3.2-py3-none-any.whl (21 kB) Collecting sphinx-copybutton~=0.5 (from -r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9e/48/1ea60e74949eecb12cdd6ac43987f9fd331156388dcc2319b45e2ebb81bf/sphinx_copybutton-0.5.2-py3-none-any.whl (13 kB) Collecting pygithub~=1.57 (from -r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2c/71/aff5465d9e3d448a5d4beab1dc7c8dec72037e3ae7e0d856ee08538dc934/PyGithub-1.59.1-py3-none-any.whl (342 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 342.2/342.2 kB 22.1 MB/s eta 0:00:00 Collecting sphinxext-remoteliteralinclude~=0.3 (from -r docs/requirements.txt (line 12)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/13/0d/7e5009f48c33d5fd533dda80b42c4a79fce8dfdd1b617d0a9df9a9836145/sphinxext_remoteliteralinclude-0.4.0-py3-none-any.whl (6.4 kB) Collecting sphinxcontrib-jquery~=4.1 (from -r docs/requirements.txt (line 13)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/76/85/749bd22d1a68db7291c89e2ebca53f4306c3f205853cf31e9de279034c3c/sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.1/121.1 kB 212.9 MB/s eta 0:00:00 Requirement already satisfied: sphinxcontrib-applehelp in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (1.0.8) Requirement already satisfied: sphinxcontrib-devhelp in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (1.0.6) Requirement already satisfied: sphinxcontrib-jsmath in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (1.0.1) Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (2.0.5) Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (1.1.10) Requirement already satisfied: sphinxcontrib-qthelp in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (1.0.7) Requirement already satisfied: Jinja2>=3.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (3.1.3) Requirement already satisfied: Pygments>=2.13 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (2.17.2) Collecting docutils<0.20,>=0.18.1 (from sphinx~=6.2->-r docs/requirements.txt (line 1)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/93/69/e391bd51bc08ed9141ecd899a0ddb61ab6465309f1eb470905c0c8868081/docutils-0.19-py3-none-any.whl (570 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 570.5/570.5 kB 19.4 MB/s eta 0:00:00 Requirement already satisfied: snowballstemmer>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (2.2.0) Requirement already satisfied: babel>=2.9 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (2.14.0) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (0.7.16) Requirement already satisfied: imagesize>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (1.4.1) Requirement already satisfied: requests>=2.25.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (2.31.0) Requirement already satisfied: packaging>=21.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (23.2) Requirement already satisfied: importlib-metadata>=4.8 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinx~=6.2->-r docs/requirements.txt (line 1)) (7.0.1) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8d/14/69b4bad34e3f250afe29a854da03acb6747711f3df06c359fa053fae4e76/docutils-0.18.1-py2.py3-none-any.whl (570 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 570.0/570.0 kB 19.4 MB/s eta 0:00:00 Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 3)) (1.16.0) Collecting pockets>=0.3 (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e9/2f/a4583c70fbd8cd04910e2884bcc2bdd670e884061f7b4d70bc13e632a993/pockets-0.9.1-py2.py3-none-any.whl (26 kB) Collecting nbconvert!=5.4 (from nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f4/50/275525adbd3dcef9aee708b97f146a094c4f7f24c15c668a6e7cb4120181/nbconvert-7.14.2-py3-none-any.whl (256 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 256.4/256.4 kB 29.7 MB/s eta 0:00:00 Collecting traitlets>=5 (from nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/45/34/5dc77fdc7bb4bd198317eea5679edf9cc0a186438b5b19dbb9062fb0f4d5/traitlets-5.14.1-py3-none-any.whl (85 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 85.4/85.4 kB 177.2 MB/s eta 0:00:00 Collecting nbformat (from nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f4/e7/ef30a90b70eba39e675689b9eaaa92530a71d7435ab8f9cae520814e0caf/nbformat-5.9.2-py3-none-any.whl (77 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.6/77.6 kB 193.6 MB/s eta 0:00:00 Collecting async-lru>=1.0.0 (from jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fa/9f/3c3503693386c4b0f245eaf5ca6198e3b28879ca0a40bde6b0e319793453/async_lru-2.0.4-py3-none-any.whl (6.1 kB) Collecting ipykernel (from jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/5a/65/6eb5e3efc439dd552b6e0bb88feb350b9c3b226c36773d2348b88dccd7f7/ipykernel-6.29.0-py3-none-any.whl (116 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 116.1/116.1 kB 206.0 MB/s eta 0:00:00 Collecting jupyter-core (from jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/86/a1/354cade6907f2fbbd32d89872ec64b62406028e7645ac13acfdb5732829e/jupyter_core-5.7.1-py3-none-any.whl (28 kB) Collecting jupyter-lsp>=2.0.0 (from jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d4/35/8332e7a07f872324e29ae4620a41a21372a8dc710b63b873d80cb2184241/jupyter_lsp-2.2.2-py3-none-any.whl (68 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 68.8/68.8 kB 165.9 MB/s eta 0:00:00 Collecting jupyter-server<3,>=2.4.0 (from jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/25/d6/6ee093c967d11144aeb1b0b4952d30e51da8eb2737837ab612084c783a58/jupyter_server-2.12.5-py3-none-any.whl (380 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 380.3/380.3 kB 24.4 MB/s eta 0:00:00 Collecting jupyterlab-server<3,>=2.19.0 (from jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a2/97/abbbe35fc67b6f9423309988f2e411f7cb117b08321866d3d8b720f4c0d4/jupyterlab_server-2.25.2-py3-none-any.whl (58 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.9/58.9 kB 168.7 MB/s eta 0:00:00 Collecting notebook-shim>=0.2 (from jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f4/79/73250372e5bbab63018b41b02d5cc6b395655ec6c1254e477ef7c913aada/notebook_shim-0.2.3-py3-none-any.whl (13 kB) Collecting tomli (from jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/97/75/10a9ebee3fd790d20926a90a2547f0bf78f371b2f13aa822c759680ca7b9/tomli-2.0.1-py3-none-any.whl (12 kB) Collecting tornado>=6.2.0 (from jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9f/12/11d0a757bb67278d3380d41955ae98527d5ad18330b2edbdc8de222b569b/tornado-6.4-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (435 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 435.4/435.4 kB 19.8 MB/s eta 0:00:00 Collecting markdown-it-py~=3.0 (from myst-parser~=2.0->-r docs/requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/42/d7/1ec15b46af6af88f19b8e5ffea08fa375d433c998b8a7639e76935c14f1f/markdown_it_py-3.0.0-py3-none-any.whl (87 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 87.5/87.5 kB 194.4 MB/s eta 0:00:00 Collecting mdit-py-plugins~=0.4 (from myst-parser~=2.0->-r docs/requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e5/3c/fe85f19699a7b40c8f9ce8ecee7e269b9b3c94099306df6f9891bdefeedd/mdit_py_plugins-0.4.0-py3-none-any.whl (54 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.1/54.1 kB 169.1 MB/s eta 0:00:00 Requirement already satisfied: pyyaml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from myst-parser~=2.0->-r docs/requirements.txt (line 8)) (6.0.1) Collecting deprecated (from pygithub~=1.57->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/20/8d/778b7d51b981a96554f29136cd59ca7880bf58094338085bcf2a979a0e6a/Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->pygithub~=1.57->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2b/4f/e04a8067c7c96c364cef7ef73906504e2f40d690811c021e1a1901473a19/PyJWT-2.8.0-py3-none-any.whl (22 kB) Collecting pynacl>=1.4.0 (from pygithub~=1.57->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ee/87/f1bb6a595f14a327e8285b9eb54d41fef76c585a0edef0a45f6fc95de125/PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 856.7/856.7 kB 19.6 MB/s eta 0:00:00 Collecting typing-extensions>=4.0.0 (from async-lru>=1.0.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b7/f4/6a90020cd2d93349b442bfcb657d0dc91eee65491600b2cb1d388bc98e6b/typing_extensions-4.9.0-py3-none-any.whl (32 kB) Requirement already satisfied: zipp>=0.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from importlib-metadata>=4.8->sphinx~=6.2->-r docs/requirements.txt (line 1)) (3.17.0) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from Jinja2>=3.0->sphinx~=6.2->-r docs/requirements.txt (line 1)) (2.1.4) Collecting anyio>=3.1.0 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/bf/cd/d6d9bb1dadf73e7af02d18225cbd2c93f8552e13130484f1c8dcfece292b/anyio-4.2.0-py3-none-any.whl (85 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 85.5/85.5 kB 171.8 MB/s eta 0:00:00 Collecting argon2-cffi (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a4/6a/e8a041599e78b6b3752da48000b14c8d1e8a04ded09c88c714ba047f34f5/argon2_cffi-23.1.0-py3-none-any.whl (15 kB) Collecting jupyter-client>=7.4.4 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/43/ae/5f4f72980765e2e5e02b260f9c53bcc706cefa7ac9c8d7240225c55788d4/jupyter_client-8.6.0-py3-none-any.whl (105 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 105.9/105.9 kB 200.9 MB/s eta 0:00:00 Collecting jupyter-events>=0.9.0 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e3/55/0c1aa72f4317e826a471dc4adc3036acd11d496ded68c4bbac2a88551519/jupyter_events-0.9.0-py3-none-any.whl (18 kB) Collecting jupyter-server-terminals (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7c/ec/ebb52454525e1d346bfa2ea91b3dcda3b92687bb73b2c25a6d621d9eeaf1/jupyter_server_terminals-0.5.2-py3-none-any.whl (13 kB) Collecting overrides (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ad/c3/f5f590a982ca2cbe29b570de61d6f387a41e7020a8340309901d769066e0/overrides-7.6.0-py3-none-any.whl (17 kB) Collecting prometheus-client (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/bb/9f/ad934418c48d01269fc2af02229ff64bcf793fd5d7f8f82dc5e7ea7ef149/prometheus_client-0.19.0-py3-none-any.whl (54 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.2/54.2 kB 170.9 MB/s eta 0:00:00 Collecting pyzmq>=24 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/76/8b/6fca99e22c6316917de32b17be299dea431544209d619da16b6d9ec85c83/pyzmq-25.1.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 19.2 MB/s eta 0:00:00 Collecting send2trash>=1.8.2 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a9/78/e4df1e080ed790acf3a704edf521006dd96b9841bd2e2a462c0d255e0565/Send2Trash-1.8.2-py3-none-any.whl (18 kB) Collecting terminado>=0.8.3 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/69/df/deebc9fb14a49062a3330f673e80b100e665b54d998163b3f62620b6240c/terminado-0.18.0-py3-none-any.whl (14 kB) Collecting websocket-client (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1e/70/1e88138a9afbed1d37093b85f0bebc3011623c4f47c166431599fe9d6c93/websocket_client-1.7.0-py3-none-any.whl (58 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.5/58.5 kB 147.1 MB/s eta 0:00:00 Collecting platformdirs>=2.5 (from jupyter-core->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/be/53/42fe5eab4a09d251a76d0043e018172db324a23fcdac70f77a551c11f618/platformdirs-4.1.0-py3-none-any.whl (17 kB) Collecting json5>=0.9.0 (from jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/70/ba/fa37123a86ae8287d6678535a944f9c3377d8165e536310ed6f6cb0f0c0e/json5-0.9.14-py2.py3-none-any.whl (19 kB) Collecting jsonschema>=4.18.0 (from jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/39/9d/b035d024c62c85f2e2d4806a59ca7b8520307f34e0932fbc8cc75fe7b2d9/jsonschema-4.21.1-py3-none-any.whl (85 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 85.5/85.5 kB 190.9 MB/s eta 0:00:00 Collecting mdurl~=0.1 (from markdown-it-py~=3.0->myst-parser~=2.0->-r docs/requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b3/38/89ba8ad64ae25be8de66a6d463314cf1eb366222074cfda9ee839c56a4b4/mdurl-0.1.2-py3-none-any.whl (10.0 kB) Collecting beautifulsoup4 (from nbconvert!=5.4->nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b1/fe/e8c672695b37eecc5cbf43e1d0638d88d66ba3a44c4d321c796f4e59167f/beautifulsoup4-4.12.3-py3-none-any.whl (147 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 147.9/147.9 kB 16.3 MB/s eta 0:00:00 Collecting bleach!=5.0.0 (from nbconvert!=5.4->nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ea/63/da7237f805089ecc28a3f36bca6a21c31fcbc2eb380f3b8f1be3312abd14/bleach-6.1.0-py3-none-any.whl (162 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 162.8/162.8 kB 8.1 MB/s eta 0:00:00 Collecting defusedxml (from nbconvert!=5.4->nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/07/6c/aa3f2f849e01cb6a001cd8554a88d4c77c5c1a31c95bdf1cf9301e6d9ef4/defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) Collecting jupyterlab-pygments (from nbconvert!=5.4->nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b1/dd/ead9d8ea85bf202d90cc513b533f9c363121c7792674f78e0d8a854b63b4/jupyterlab_pygments-0.3.0-py3-none-any.whl (15 kB) Collecting mistune<4,>=2.0.3 (from nbconvert!=5.4->nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f0/74/c95adcdf032956d9ef6c89a9b8a5152bf73915f8c633f3e3d88d06bd699c/mistune-3.0.2-py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 48.0/48.0 kB 182.4 MB/s eta 0:00:00 Collecting nbclient>=0.5.0 (from nbconvert!=5.4->nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/6b/3a/607149974149f847125c38a62b9ea2b8267eb74823bbf8d8c54ae0212a00/nbclient-0.9.0-py3-none-any.whl (24 kB) Collecting pandocfilters>=1.4.1 (from nbconvert!=5.4->nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ef/af/4fbc8cab944db5d21b7e2a5b8e9211a03a79852b1157e2c102fcc61ac440/pandocfilters-1.5.1-py2.py3-none-any.whl (8.7 kB) Collecting tinycss2 (from nbconvert!=5.4->nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/da/99/fd23634d6962c2791fb8cb6ccae1f05dcbfc39bce36bba8b1c9a8d92eae8/tinycss2-1.2.1-py3-none-any.whl (21 kB) Collecting fastjsonschema (from nbformat->nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9c/b9/79691036d4a8f9857e74d1728b23f34f583b81350a27492edda58d5604e1/fastjsonschema-2.19.1-py3-none-any.whl (23 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->pygithub~=1.57->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f8/46/2776ca9b602f79633fdf69824b5e18c94f2e0c5f09a94fc69e5b0887c14d/cryptography-42.0.1-cp39-abi3-manylinux_2_28_x86_64.whl (4.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 19.0 MB/s eta 0:00:00 Collecting cffi>=1.4.1 (from pynacl>=1.4.0->pygithub~=1.57->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ea/ac/e9e77bc385729035143e54cc8c4785bd480eaca9df17565963556b0b7a93/cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 443.4/443.4 kB 22.9 MB/s eta 0:00:00 Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from requests>=2.25.0->sphinx~=6.2->-r docs/requirements.txt (line 1)) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from requests>=2.25.0->sphinx~=6.2->-r docs/requirements.txt (line 1)) (3.6) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from requests>=2.25.0->sphinx~=6.2->-r docs/requirements.txt (line 1)) (2.1.0) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from requests>=2.25.0->sphinx~=6.2->-r docs/requirements.txt (line 1)) (2023.11.17) Collecting wrapt<2,>=1.10 (from deprecated->pygithub~=1.57->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b1/e7/459a8a4f40f2fa65eb73cb3f339e6d152957932516d18d0e996c7ae2d7ae/wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 80.1/80.1 kB 186.9 MB/s eta 0:00:00 Collecting comm>=0.1.1 (from ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/6e/c1/e7335bd49aa3fa3bd453e34a4580b0076804f219897ad76d4d5aa4d8f22f/comm-0.2.1-py3-none-any.whl (7.2 kB) Collecting debugpy>=1.6.5 (from ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f7/79/6053a14f60e879b8cb1a42dadbbef8822603eadde79944c61e955309b622/debugpy-1.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.4/3.4 MB 18.8 MB/s eta 0:00:00 Collecting ipython>=7.23.1 (from ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/47/6b/d9fdcdef2eb6a23f391251fde8781c38d42acd82abe84d054cb74f7863b0/ipython-8.18.1-py3-none-any.whl (808 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 808.2/808.2 kB 20.1 MB/s eta 0:00:00 Collecting matplotlib-inline>=0.1 (from ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f2/51/c34d7a1d528efaae3d8ddb18ef45a41f284eacf9e514523b191b7d0872cc/matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB) Collecting nest-asyncio (from ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a0/c4/c2971a3ba4c6103a3d10c4b0f24f461ddc027f0f09763220cf35ca1401b3/nest_asyncio-1.6.0-py3-none-any.whl (5.2 kB) Collecting psutil (from ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c5/4f/0e22aaa246f96d6ac87fe5ebb9c5a693fbe8877f537a1022527c47ca43c5/psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 288.2/288.2 kB 23.5 MB/s eta 0:00:00 Collecting sniffio>=1.1 (from anyio>=3.1.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c3/a0/5dba8ed157b0136607c7f2151db695885606968d1fae123dc3391e0cfdbf/sniffio-1.3.0-py3-none-any.whl (10 kB) Collecting exceptiongroup>=1.0.2 (from anyio>=3.1.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b8/9a/5028fd52db10e600f1c4674441b968cf2ea4959085bfb5b99fb1250e5f68/exceptiongroup-1.2.0-py3-none-any.whl (16 kB) Collecting webencodings (from bleach!=5.0.0->nbconvert!=5.4->nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->pygithub~=1.57->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/62/d5/5f610ebe421e85889f2e55e33b7f9a6795bd982198517d912eb1c76e1a53/pycparser-2.21-py2.py3-none-any.whl (118 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 118.7/118.7 kB 203.3 MB/s eta 0:00:00 Collecting decorator (from ipython>=7.23.1->ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d5/50/83c593b07763e1161326b3b8c6686f0f4b0f24d5526546bee538c89837d6/decorator-5.1.1-py3-none-any.whl (9.1 kB) Collecting jedi>=0.16 (from ipython>=7.23.1->ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/20/9f/bc63f0f0737ad7a60800bfd472a4836661adae21f9c2535f3957b1e54ceb/jedi-0.19.1-py2.py3-none-any.whl (1.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 19.1 MB/s eta 0:00:00 Collecting prompt-toolkit<3.1.0,>=3.0.41 (from ipython>=7.23.1->ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ee/fd/ca7bf3869e7caa7a037e23078539467b433a4e01eebd93f77180ab927766/prompt_toolkit-3.0.43-py3-none-any.whl (386 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 386.1/386.1 kB 28.8 MB/s eta 0:00:00 Collecting stack-data (from ipython>=7.23.1->ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f1/7b/ce1eafaf1a76852e2ec9b22edecf1daa58175c090266e9f6c64afcd81d91/stack_data-0.6.3-py3-none-any.whl (24 kB) Collecting pexpect>4.3 (from ipython>=7.23.1->ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9e/c3/059298687310d527a58bb01f3b1965787ee3b40dce76752eda8b44e9a2c5/pexpect-4.9.0-py2.py3-none-any.whl (63 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 63.8/63.8 kB 175.8 MB/s eta 0:00:00 Collecting attrs>=22.2.0 (from jsonschema>=4.18.0->jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e0/44/827b2a91a5816512fcaf3cc4ebc465ccd5d598c45cefa6703fcf4a79018f/attrs-23.2.0-py3-none-any.whl (60 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.8/60.8 kB 202.6 MB/s eta 0:00:00 Collecting jsonschema-specifications>=2023.03.6 (from jsonschema>=4.18.0->jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ee/07/44bd408781594c4d0a027666ef27fab1e441b109dc3b76b4f836f8fd04fe/jsonschema_specifications-2023.12.1-py3-none-any.whl (18 kB) Collecting referencing>=0.28.4 (from jsonschema>=4.18.0->jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/14/2a/0a9f649354cd2d40f6c4f16eadabd9727377e3b9bc2ccec6cb630d9a6765/referencing-0.32.1-py3-none-any.whl (26 kB) Collecting rpds-py>=0.7.1 (from jsonschema>=4.18.0->jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c2/e9/190521d63b504c12bdcffb27ea6aaac1dbb2521be983c3a2a0ab4a938b8c/rpds_py-0.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 19.4 MB/s eta 0:00:00 Requirement already satisfied: python-dateutil>=2.8.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (from jupyter-client>=7.4.4->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) (2.8.2) Collecting python-json-logger>=2.0.4 (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/35/a6/145655273568ee78a581e734cf35beb9e33a370b29c5d3c8fee3744de29f/python_json_logger-2.0.7-py3-none-any.whl (8.1 kB) Collecting rfc3339-validator (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7b/44/4e421b96b67b2daff264473f7465db72fbdf36a07e05494f50300cc7b0c6/rfc3339_validator-0.1.4-py2.py3-none-any.whl (3.5 kB) Collecting rfc3986-validator>=0.1.1 (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9e/51/17023c0f8f1869d8806b979a2bffa3f861f26a3f1a66b094288323fba52f/rfc3986_validator-0.1.1-py2.py3-none-any.whl (4.2 kB) Collecting ptyprocess (from terminado>=0.8.3->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/22/a6/858897256d0deac81a172289110f31629fc4cee19b6f01283303e18c8db3/ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) Collecting argon2-cffi-bindings (from argon2-cffi->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ec/f7/378254e6dd7ae6f31fe40c8649eea7d4832a42243acaf0f1fff9083b2bed/argon2_cffi_bindings-21.2.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (86 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 86.2/86.2 kB 191.7 MB/s eta 0:00:00 Collecting soupsieve>1.2 (from beautifulsoup4->nbconvert!=5.4->nbsphinx~=0.9->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/4c/f3/038b302fdfbe3be7da016777069f26ceefe11a681055ea1f7817546508e3/soupsieve-2.5-py3-none-any.whl (36 kB) Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython>=7.23.1->ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/05/63/8011bd08a4111858f79d2b09aad86638490d62fbf881c44e434a6dfca87b/parso-0.8.3-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.8/100.8 kB 219.2 MB/s eta 0:00:00 Collecting fqdn (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/cf/58/8acf1b3e91c58313ce5cb67df61001fc9dcd21be4fadb76c1a2d540e09ed/fqdn-1.5.1-py3-none-any.whl (9.1 kB) Collecting isoduration (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7b/55/e5326141505c5d5e34c5e0935d2908a74e4561eca44108fbfb9c13d2911a/isoduration-20.11.0-py3-none-any.whl (11 kB) Collecting jsonpointer>1.13 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/12/f6/0232cc0c617e195f06f810534d00b74d2f348fe71b2118009ad8ad31f878/jsonpointer-2.4-py2.py3-none-any.whl (7.8 kB) Collecting uri-template (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e7/00/3fca040d7cf8a32776d3d81a00c8ee7457e00f80c649f1e4a863c8321ae9/uri_template-1.3.0-py3-none-any.whl (11 kB) Collecting webcolors>=1.11 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d5/e1/3e9013159b4cbb71df9bd7611cbf90dc2c621c8aeeb677fc41dad72f2261/webcolors-1.13-py3-none-any.whl (14 kB) Collecting wcwidth (from prompt-toolkit<3.1.0,>=3.0.41->ipython>=7.23.1->ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fd/84/fd2ba7aafacbad3c4201d395674fc6348826569da3c0937e75505ead3528/wcwidth-0.2.13-py2.py3-none-any.whl (34 kB) Collecting executing>=1.2.0 (from stack-data->ipython>=7.23.1->ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/80/03/6ea8b1b2a5ab40a7a60dc464d3daa7aa546e0a74d74a9f8ff551ea7905db/executing-2.0.1-py2.py3-none-any.whl (24 kB) Collecting asttokens>=2.1.0 (from stack-data->ipython>=7.23.1->ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/45/86/4736ac618d82a20d87d2f92ae19441ebc7ac9e7a581d7e58bbe79233b24a/asttokens-2.4.1-py2.py3-none-any.whl (27 kB) Collecting pure-eval (from stack-data->ipython>=7.23.1->ipykernel->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2b/27/77f9d5684e6bce929f5cfe18d6cfbe5133013c06cb2fbf5933670e60761d/pure_eval-0.2.2-py3-none-any.whl (11 kB) Collecting arrow>=0.15.0 (from isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f8/ed/e97229a566617f2ae958a6b13e7cc0f585470eac730a73e9e82c32a3cdd2/arrow-1.3.0-py3-none-any.whl (66 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 66.4/66.4 kB 177.8 MB/s eta 0:00:00 Collecting types-python-dateutil>=2.8.10 (from arrow>=0.15.0->isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0->-r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/28/50/8ed67814241e2684369f4b8b881c7d31a0816e76c8690ea8518017a35b7e/types_python_dateutil-2.8.19.20240106-py3-none-any.whl (9.7 kB) Installing collected packages: webencodings, wcwidth, pure-eval, ptyprocess, json5, fastjsonschema, wrapt, websocket-client, webcolors, uri-template, typing-extensions, types-python-dateutil, traitlets, tornado, tomli, tinycss2, sphinxext-remoteliteralinclude, soupsieve, sniffio, send2trash, rpds-py, rfc3986-validator, rfc3339-validator, readthedocs-sphinx-search, pyzmq, python-json-logger, pyjwt, pycparser, psutil, prompt-toolkit, prometheus-client, pockets, platformdirs, pexpect, parso, pandocfilters, overrides, nest-asyncio, mistune, mdurl, jupyterlab-pygments, jsonpointer, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, bleach, attrs, asttokens, terminado, stack-data, sphinxcontrib-napoleon, sphinx, referencing, plantweb, matplotlib-inline, markdown-it-py, jupyter-core, jedi, deprecated, comm, cffi, beautifulsoup4, async-lru, arrow, anyio, sphinxcontrib-programoutput, sphinxcontrib-jquery, sphinx-copybutton, pynacl, mdit-py-plugins, jupyter-server-terminals, jupyter-client, jsonschema-specifications, isoduration, ipython, cryptography, argon2-cffi-bindings, sphinx-rtd-theme, myst-parser, jsonschema, ipykernel, argon2-cffi, pygithub, nbformat, nbclient, jupyter-events, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab Attempting uninstall: docutils Found existing installation: docutils 0.20.1 Uninstalling docutils-0.20.1: Successfully uninstalled docutils-0.20.1 Attempting uninstall: sphinx Found existing installation: Sphinx 7.2.6 Uninstalling Sphinx-7.2.6: Successfully uninstalled Sphinx-7.2.6 Successfully installed anyio-4.2.0 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 attrs-23.2.0 beautifulsoup4-4.12.3 bleach-6.1.0 cffi-1.16.0 comm-0.2.1 cryptography-42.0.1 debugpy-1.8.0 decorator-5.1.1 defusedxml-0.7.1 deprecated-1.2.14 docutils-0.18.1 exceptiongroup-1.2.0 executing-2.0.1 fastjsonschema-2.19.1 fqdn-1.5.1 ipykernel-6.29.0 ipython-8.18.1 isoduration-20.11.0 jedi-0.19.1 json5-0.9.14 jsonpointer-2.4 jsonschema-4.21.1 jsonschema-specifications-2023.12.1 jupyter-client-8.6.0 jupyter-core-5.7.1 jupyter-events-0.9.0 jupyter-lsp-2.2.2 jupyter-server-2.12.5 jupyter-server-terminals-0.5.2 jupyterlab-4.0.11 jupyterlab-pygments-0.3.0 jupyterlab-server-2.25.2 markdown-it-py-3.0.0 matplotlib-inline-0.1.6 mdit-py-plugins-0.4.0 mdurl-0.1.2 mistune-3.0.2 myst-parser-2.0.0 nbclient-0.9.0 nbconvert-7.14.2 nbformat-5.9.2 nbsphinx-0.9.3 nest-asyncio-1.6.0 notebook-shim-0.2.3 overrides-7.6.0 pandocfilters-1.5.1 parso-0.8.3 pexpect-4.9.0 plantweb-1.2.1 platformdirs-4.1.0 pockets-0.9.1 prometheus-client-0.19.0 prompt-toolkit-3.0.43 psutil-5.9.8 ptyprocess-0.7.0 pure-eval-0.2.2 pycparser-2.21 pygithub-1.59.1 pyjwt-2.8.0 pynacl-1.5.0 python-json-logger-2.0.7 pyzmq-25.1.2 readthedocs-sphinx-search-0.3.2 referencing-0.32.1 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.17.1 send2trash-1.8.2 sniffio-1.3.0 soupsieve-2.5 sphinx-6.2.1 sphinx-copybutton-0.5.2 sphinx-rtd-theme-1.3.0 sphinxcontrib-jquery-4.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxext-remoteliteralinclude-0.4.0 stack-data-0.6.3 terminado-0.18.0 tinycss2-1.2.1 tomli-2.0.1 tornado-6.4 traitlets-5.14.1 types-python-dateutil-2.8.19.20240106 typing-extensions-4.9.0 uri-template-1.3.0 wcwidth-0.2.13 webcolors-1.13 webencodings-0.5.1 websocket-client-1.7.0 wrapt-1.16.0 [rtd-command-info] start-time: 2024-01-26T00:11:42.524994Z, end-time: 2024-01-26T00:11:43.683138Z, duration: 1, exit-code: 0 python ./setup.py install --force /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: EasyInstallDeprecationWarning: easy_install command is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` and ``easy_install``. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://github.com/pypa/setuptools/issues/917 for details. ******************************************************************************** !! self.initialize_options() running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' adding license file 'LICENSE' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/multidim_plotter.py -> build/lib/emod_api copying emod_api/peek_camp.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api creating build/lib/examples copying examples/property_report_to_csv.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/spatial_report.py -> build/lib/examples creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/plot_spat_means.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/PropertiesAndAttributes.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/PreDefinedDistributions.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/Updateable.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics creating build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather creating build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/plot_icj_means.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/plot_prop_report.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/utils.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/icj_to_csv.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization creating build/lib/emod_api/legacy copying emod_api/legacy/plotAllCharts.py -> build/lib/emod_api/legacy copying emod_api/legacy/__init__.py -> build/lib/emod_api/legacy creating build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config creating build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl_viz.py -> build/lib/emod_api/interventions copying emod_api/interventions/migration.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl.py -> build/lib/emod_api/interventions creating build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/demographics/service copying emod_api/demographics/service/service.py -> build/lib/emod_api/demographics/service copying emod_api/demographics/service/grid_construction.py -> build/lib/emod_api/demographics/service copying emod_api/demographics/service/__init__.py -> build/lib/emod_api/demographics/service creating build/lib/emod_api/migration/client copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests copying tests/unittests/test_properties_and_attributes.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying tests/unittests/test_version.py -> build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/plot_spat_means.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PropertiesAndAttributes.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PreDefinedDistributions.py -> build/bdist.linux-x86_64/egg/emod_api/demographics creating build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/service.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Updateable.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/multidim_plotter.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/plot_icj_means.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/plot_prop_report.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/utils.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/icj_to_csv.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization creating build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/legacy/plotAllCharts.py -> build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/legacy/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/legacy creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl_viz.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/migration.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl.py -> build/bdist.linux-x86_64/egg/emod_api/interventions creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration creating build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/peek_camp.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/property_report_to_csv.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_properties_and_attributes.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/plot_spat_means.py to plot_spat_means.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PropertiesAndAttributes.py to PropertiesAndAttributes.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PreDefinedDistributions.py to PreDefinedDistributions.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/service.py to service.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/grid_construction.py to grid_construction.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Updateable.py to Updateable.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/multidim_plotter.py to multidim_plotter.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_icj_means.py to plot_icj_means.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_prop_report.py to plot_prop_report.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/utils.py to utils.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/icj_to_csv.py to icj_to_csv.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/legacy/plotAllCharts.py to plotAllCharts.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/legacy/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl_viz.py to ccdl_viz.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/migration.py to migration.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl.py to ccdl.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/peek_camp.py to peek_camp.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/property_report_to_csv.py to property_report_to_csv.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_properties_and_attributes.py to test_properties_and_attributes.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-39.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-39: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-39: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-39: module references __file__ emod_api.spatialreports.__pycache__.__main__.cpython-39: module references __file__ examples.__pycache__.insetchart.cpython-39: module references __file__ examples.__pycache__.property_report_to_csv.cpython-39: module references __file__ examples.__pycache__.spatial_report.cpython-39: module references __file__ examples.__pycache__.weather_file.cpython-39: module references __file__ creating dist creating 'dist/emod_api-1.30.8-py3.9.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.30.8-py3.9.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages/emod_api-1.30.8-py3.9.egg Extracting emod_api-1.30.8-py3.9.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Adding emod-api 1.30.8 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages/emod_api-1.30.8-py3.9.egg Processing dependencies for emod-api==1.30.8 Searching for matplotlib==3.8.2 Best match: matplotlib 3.8.2 Adding matplotlib 3.8.2 to easy-install.pth file detected new path './emod_api-1.30.8-py3.9.egg' Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for parse==1.20.0 Best match: parse 1.20.0 Adding parse 1.20.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for graphviz==0.20.1 Best match: graphviz 0.20.1 Adding graphviz 0.20.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for lz4==4.3.3 Best match: lz4 4.3.3 Adding lz4 4.3.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for scikit-learn==1.4.0 Best match: scikit-learn 1.4.0 Adding scikit-learn 1.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for geographiclib==2.0 Best match: geographiclib 2.0 Adding geographiclib 2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for pyproj==3.6.1 Best match: pyproj 3.6.1 Adding pyproj 3.6.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for shapely==2.0.2 Best match: shapely 2.0.2 Adding shapely 2.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for scipy==1.12.0 Best match: scipy 1.12.0 Adding scipy 1.12.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for pandas==2.2.0 Best match: pandas 2.2.0 Adding pandas 2.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for PyYAML==6.0.1 Best match: PyYAML 6.0.1 Adding PyYAML 6.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for numpy==1.26.3 Best match: numpy 1.26.3 Adding numpy 1.26.3 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for importlib-resources==6.1.1 Best match: importlib-resources 6.1.1 Adding importlib-resources 6.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 Adding python-dateutil 2.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for pyparsing==3.1.1 Best match: pyparsing 3.1.1 Adding pyparsing 3.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for pillow==10.2.0 Best match: pillow 10.2.0 Adding pillow 10.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for packaging==23.2 Best match: packaging 23.2 Adding packaging 23.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for kiwisolver==1.4.5 Best match: kiwisolver 1.4.5 Adding kiwisolver 1.4.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for fonttools==4.47.2 Best match: fonttools 4.47.2 Adding fonttools 4.47.2 to easy-install.pth file Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for cycler==0.12.1 Best match: cycler 0.12.1 Adding cycler 0.12.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for contourpy==1.2.0 Best match: contourpy 1.2.0 Adding contourpy 1.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for threadpoolctl==3.2.0 Best match: threadpoolctl 3.2.0 Adding threadpoolctl 3.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for joblib==1.3.2 Best match: joblib 1.3.2 Adding joblib 1.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for certifi==2023.11.17 Best match: certifi 2023.11.17 Adding certifi 2023.11.17 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for tzdata==2023.4 Best match: tzdata 2023.4 Adding tzdata 2023.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for pytz==2023.3.post1 Best match: pytz 2023.3.post1 Adding pytz 2023.3.post1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for zipp==3.17.0 Best match: zipp 3.17.0 Adding zipp 3.17.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Finished processing dependencies for emod-api==1.30.8 [rtd-command-info] start-time: 2024-01-26T00:11:45.319236Z, end-time: 2024-01-26T00:11:45.376055Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "emod-api" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ tags.add('emodapi') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude', 'sphinx.ext.viewcode', 'sphinx_search.extension', # search across multiple docsets in domain 'myst_parser', # source files written in MD or RST ] myst_enable_extensions = [ "amsmath", "attrs_inline", "colon_fence", "deflist", "dollarmath", "fieldlist", "html_admonition", "html_image", "linkify", "replacements", "smartquotes", "strikethrough", "substitution", "tasklist", ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # source_suffix = ['.rst', '.md'] # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emod-api' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = 'en' # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_css_files = ['theme_overrides.css'] html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # -- RTD Sphinx search for searching across the entire domain, default parent ------------- if os.environ.get('READTHEDOCS') == 'True': search_project_parent = "institute-for-disease-modeling-idm" search_project = os.environ["READTHEDOCS_PROJECT"] search_version = os.environ["READTHEDOCS_VERSION"] rtd_sphinx_search_default_filter = f"subprojects:{search_project}/{search_version}" rtd_sphinx_search_filters = { "Search this project": f"project:{search_project}/{search_version}", "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}", } # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Define this variable in case it's not defined by the user. # It defaults to `alabaster` which is the default from Sphinx. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_theme html_theme = globals().get('html_theme', 'alabaster') #Add project information to the template context. context = { 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.30.2", "/en/v1.30.2/"), ("v1.30.1", "/en/v1.30.1/"), ("v1.29.6", "/en/v1.29.6/"), ("v1.28.5", "/en/v1.28.5/"), ("v1.28.1", "/en/v1.28.1/"), ("v1.27.4", "/en/v1.27.4/"), ("v1.27.1", "/en/v1.27.1/"), ("v1.26.1", "/en/v1.26.1/"), ("v1.25.1", "/en/v1.25.1/"), ("v1.24.11", "/en/v1.24.11/"), ("v1.24.8", "/en/v1.24.8/"), ("v1.24.1", "/en/v1.24.1/"), ("v1.23.2", "/en/v1.23.2/"), ("v1.23.1", "/en/v1.23.1/"), ("v1.22.11", "/en/v1.22.11/"), ("v1.22.10", "/en/v1.22.10/"), ("v1.22.9", "/en/v1.22.9/"), ("v1.22.1", "/en/v1.22.1/"), ("v1.22.0", "/en/v1.22.0/"), ("v1.21.1", "/en/v1.21.1/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.20.1", "/en/v1.20.1/"), ("v1.19.13", "/en/v1.19.13/"), ("v1.19.2", "/en/v1.19.2/"), ("v1.18.1", "/en/v1.18.1/"), ("v1.17.4", "/en/v1.17.4/"), ("v1.17.3", "/en/v1.17.3/"), ("v1.17.2", "/en/v1.17.2/"), ("v1.16.10", "/en/v1.16.10/"), ("v1.16.5", "/en/v1.16.5/"), ("v1.16.2", "/en/v1.16.2/"), ("v1.15.6", "/en/v1.15.6/"), ("v1.15.4", "/en/v1.15.4/"), ("v1.15.1", "/en/v1.15.1/"), ("v1.14.7", "/en/v1.14.7/"), ("v1.14.1", "/en/v1.14.1/"), ("v1.13.1", "/en/v1.13.1/"), ("v1.12.1", "/en/v1.12.1/"), ("v1.11.7", "/en/v1.11.7/"), ("v1.11.4", "/en/v1.11.4/"), ("v1.11.0", "/en/v1.11.0/"), ("v1.10.8", "/en/v1.10.8/"), ("v1.10.6", "/en/v1.10.6/"), ("v1.10.5", "/en/v1.10.5/"), ("v1.10.3", "/en/v1.10.3/"), ("v1.10.2", "/en/v1.10.2/"), ("v1.9.2", "/en/v1.9.2/"), ("v1.9.1", "/en/v1.9.1/"), ("v1.8.9", "/en/v1.8.9/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': '', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '0453262b', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): for key in context: if key not in html_context: html_context[key] = context[key] else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/1974284/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2024-01-26T00:11:45.454067Z, end-time: 2024-01-26T00:12:03.969415Z, duration: 18, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v6.2.1 making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'tasklist', 'linkify', 'attrs_inline', 'colon_fence', 'html_admonition', 'smartquotes', 'amsmath', 'deflist', 'replacements', 'dollarmath', 'strikethrough', 'fieldlist', 'html_image', 'substitution'}, disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 72 source files that are out of date updating environment: [new config] 72 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 2%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 5%] emod_api.channelreports.channels reading sources... [ 6%] emod_api.channelreports.icj_to_csv reading sources... [ 8%] emod_api.channelreports.plot_icj_means reading sources... [ 9%] emod_api.channelreports.plot_prop_report reading sources... [ 11%] emod_api.channelreports.utils reading sources... [ 12%] emod_api.config reading sources... [ 13%] emod_api.config.default_from_schema reading sources... [ 15%] emod_api.config.default_from_schema_no_validation reading sources... [ 16%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 19%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 22%] emod_api.config.from_poi_and_binary reading sources... [ 23%] emod_api.config.from_schema reading sources... [ 25%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 26%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 30%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 33%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 38%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 41%] emod_api.demographics.service reading sources... [ 43%] emod_api.demographics.service.grid_construction reading sources... [ 44%] emod_api.demographics.service.service reading sources... [ 45%] emod_api.interventions reading sources... [ 47%] emod_api.interventions.ccdl reading sources... [ 48%] emod_api.interventions.ccdl_viz reading sources... [ 50%] emod_api.interventions.common reading sources... [ 51%] emod_api.interventions.import_pressure reading sources... [ 52%] emod_api.interventions.migration reading sources... [ 54%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 58%] emod_api.interventions.utils reading sources... [ 59%] emod_api.legacy reading sources... [ 61%] emod_api.legacy.plotAllCharts no display found. Using non-interactive Agg backend reading sources... [ 62%] emod_api.migration reading sources... [ 63%] emod_api.migration.client reading sources... [ 65%] emod_api.migration.client.client reading sources... [ 66%] emod_api.migration.migration reading sources... [ 68%] emod_api.multidim_plotter reading sources... [ 69%] emod_api.peek_camp reading sources... [ 70%] emod_api.schema reading sources... [ 72%] emod_api.schema.dtk_post_process_schema reading sources... [ 73%] emod_api.schema.get_schema reading sources... [ 75%] emod_api.schema_to_class reading sources... [ 76%] emod_api.serialization reading sources... [ 77%] emod_api.serialization.CensusAndModPop reading sources... [ 79%] emod_api.serialization.SerializedPopulation reading sources... [ 80%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 83%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.plot_spat_means reading sources... [ 87%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 90%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] faq reading sources... [ 94%] glossary reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [ 98%] modules reading sources... [100%] plotters looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 1%] emod_api writing output... [ 2%] emod_api.campaign writing output... [ 4%] emod_api.channelreports writing output... [ 5%] emod_api.channelreports.channels writing output... [ 6%] emod_api.channelreports.icj_to_csv writing output... [ 8%] emod_api.channelreports.plot_icj_means writing output... [ 9%] emod_api.channelreports.plot_prop_report writing output... [ 11%] emod_api.channelreports.utils writing output... [ 12%] emod_api.config writing output... [ 13%] emod_api.config.default_from_schema writing output... [ 15%] emod_api.config.default_from_schema_no_validation writing output... [ 16%] emod_api.config.dtk_post_process_adhocevents writing output... [ 18%] emod_api.config.dtk_pre_process_adhocevents writing output... [ 19%] emod_api.config.dtk_pre_process_w5ml writing output... [ 20%] emod_api.config.from_overrides writing output... [ 22%] emod_api.config.from_poi_and_binary writing output... [ 23%] emod_api.config.from_schema writing output... [ 25%] emod_api.config.schema_to_config writing output... [ 26%] emod_api.demographics writing output... [ 27%] emod_api.demographics.BaseInputFile writing output... [ 29%] emod_api.demographics.Demographics writing output... [ 30%] emod_api.demographics.DemographicsGenerator writing output... [ 31%] emod_api.demographics.DemographicsInputDataParsers writing output... [ 33%] emod_api.demographics.DemographicsTemplates writing output... [ 34%] emod_api.demographics.Node writing output... [ 36%] emod_api.demographics.PreDefinedDistributions writing output... [ 37%] emod_api.demographics.PropertiesAndAttributes writing output... [ 38%] emod_api.demographics.Updateable writing output... [ 40%] emod_api.demographics.demographics_utils writing output... [ 41%] emod_api.demographics.service writing output... [ 43%] emod_api.demographics.service.grid_construction writing output... [ 44%] emod_api.demographics.service.service writing output... [ 45%] emod_api.interventions writing output... [ 47%] emod_api.interventions.ccdl writing output... [ 48%] emod_api.interventions.ccdl_viz writing output... [ 50%] emod_api.interventions.common writing output... [ 51%] emod_api.interventions.import_pressure writing output... [ 52%] emod_api.interventions.migration writing output... [ 54%] emod_api.interventions.node_multiplier writing output... [ 55%] emod_api.interventions.outbreak writing output... [ 56%] emod_api.interventions.simple_vaccine writing output... [ 58%] emod_api.interventions.utils writing output... [ 59%] emod_api.legacy writing output... [ 61%] emod_api.legacy.plotAllCharts writing output... [ 62%] emod_api.migration writing output... [ 63%] emod_api.migration.client writing output... [ 65%] emod_api.migration.client.client writing output... [ 66%] emod_api.migration.migration writing output... [ 68%] emod_api.multidim_plotter writing output... [ 69%] emod_api.peek_camp writing output... [ 70%] emod_api.schema writing output... [ 72%] emod_api.schema.dtk_post_process_schema writing output... [ 73%] emod_api.schema.get_schema writing output... [ 75%] emod_api.schema_to_class writing output... [ 76%] emod_api.serialization writing output... [ 77%] emod_api.serialization.CensusAndModPop writing output... [ 79%] emod_api.serialization.SerializedPopulation writing output... [ 80%] emod_api.serialization.dtkFileSupport writing output... [ 81%] emod_api.serialization.dtkFileTools writing output... [ 83%] emod_api.serialization.dtkFileUtility writing output... [ 84%] emod_api.spatialreports writing output... [ 86%] emod_api.spatialreports.plot_spat_means writing output... [ 87%] emod_api.spatialreports.spatial writing output... [ 88%] emod_api.tabularoutput writing output... [ 90%] emod_api.weather writing output... [ 91%] emod_api.weather.weather writing output... [ 93%] faq writing output... [ 94%] glossary writing output... [ 95%] index writing output... [ 97%] installation writing output... [ 98%] modules writing output... [100%] plotters generating indices... genindex py-modindex done highlighting module code... [ 2%] emod_api.campaign highlighting module code... [ 4%] emod_api.channelreports.channels highlighting module code... [ 6%] emod_api.channelreports.icj_to_csv highlighting module code... [ 8%] emod_api.channelreports.plot_icj_means highlighting module code... [ 10%] emod_api.channelreports.plot_prop_report highlighting module code... [ 12%] emod_api.channelreports.utils highlighting module code... [ 14%] emod_api.config.default_from_schema highlighting module code... [ 16%] emod_api.config.default_from_schema_no_validation highlighting module code... [ 18%] emod_api.config.dtk_post_process_adhocevents highlighting module code... [ 20%] emod_api.config.dtk_pre_process_adhocevents highlighting module code... [ 22%] emod_api.config.dtk_pre_process_w5ml highlighting module code... [ 24%] emod_api.config.from_overrides highlighting module code... [ 26%] emod_api.config.from_poi_and_binary highlighting module code... [ 28%] emod_api.config.from_schema highlighting module code... [ 30%] emod_api.config.schema_to_config highlighting module code... [ 32%] emod_api.demographics.BaseInputFile highlighting module code... [ 34%] emod_api.demographics.Demographics highlighting module code... [ 36%] emod_api.demographics.DemographicsGenerator highlighting module code... [ 38%] emod_api.demographics.DemographicsInputDataParsers highlighting module code... [ 40%] emod_api.demographics.DemographicsTemplates highlighting module code... [ 42%] emod_api.demographics.Node highlighting module code... [ 44%] emod_api.demographics.PreDefinedDistributions highlighting module code... [ 46%] emod_api.demographics.PropertiesAndAttributes highlighting module code... [ 48%] emod_api.demographics.Updateable highlighting module code... [ 51%] emod_api.demographics.demographics_utils highlighting module code... [ 53%] emod_api.demographics.service.grid_construction highlighting module code... [ 55%] emod_api.interventions.ccdl_viz highlighting module code... [ 57%] emod_api.interventions.common highlighting module code... [ 59%] emod_api.interventions.import_pressure highlighting module code... [ 61%] emod_api.interventions.migration highlighting module code... [ 63%] emod_api.interventions.node_multiplier highlighting module code... [ 65%] emod_api.interventions.outbreak highlighting module code... [ 67%] emod_api.interventions.simple_vaccine highlighting module code... [ 69%] emod_api.interventions.utils highlighting module code... [ 71%] emod_api.legacy.plotAllCharts highlighting module code... [ 73%] emod_api.migration.client.client highlighting module code... [ 75%] emod_api.migration.migration highlighting module code... [ 77%] emod_api.multidim_plotter highlighting module code... [ 79%] emod_api.peek_camp highlighting module code... [ 81%] emod_api.schema.dtk_post_process_schema highlighting module code... [ 83%] emod_api.schema.get_schema highlighting module code... [ 85%] emod_api.schema_to_class highlighting module code... [ 87%] emod_api.serialization.CensusAndModPop highlighting module code... [ 89%] emod_api.serialization.SerializedPopulation highlighting module code... [ 91%] emod_api.serialization.dtkFileSupport highlighting module code... [ 93%] emod_api.serialization.dtkFileTools highlighting module code... [ 95%] emod_api.spatialreports.plot_spat_means highlighting module code... [ 97%] emod_api.spatialreports.spatial highlighting module code... [100%] emod_api.weather.weather writing additional pages... search opensearch done copying images... [ 20%] images/fertility_over_time_doc.png copying images... [ 40%] images/sweep_plot.png copying images... [ 60%] images/spat_plot.png copying images... [ 80%] images/prop_plot.png copying images... [100%] images/colormap_plot.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done Updating searchtools for Read the Docs search... build succeeded. The HTML pages are in ../_readthedocs/html. [rtd-command-info] start-time: 2024-01-26T00:12:04.044703Z, end-time: 2024-01-26T00:12:16.555356Z, duration: 12, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip Running Sphinx v6.2.1 making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'replacements', 'html_image', 'substitution', 'colon_fence', 'tasklist', 'dollarmath', 'deflist', 'html_admonition', 'linkify', 'amsmath', 'fieldlist', 'attrs_inline', 'smartquotes', 'strikethrough'}, disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 72 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 2%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 5%] emod_api.channelreports.channels reading sources... [ 6%] emod_api.channelreports.icj_to_csv reading sources... [ 8%] emod_api.channelreports.plot_icj_means reading sources... [ 9%] emod_api.channelreports.plot_prop_report reading sources... [ 11%] emod_api.channelreports.utils reading sources... [ 12%] emod_api.config reading sources... [ 13%] emod_api.config.default_from_schema reading sources... [ 15%] emod_api.config.default_from_schema_no_validation reading sources... [ 16%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 19%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 22%] emod_api.config.from_poi_and_binary reading sources... [ 23%] emod_api.config.from_schema reading sources... [ 25%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 26%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 30%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 33%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 38%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 41%] emod_api.demographics.service reading sources... [ 43%] emod_api.demographics.service.grid_construction reading sources... [ 44%] emod_api.demographics.service.service reading sources... [ 45%] emod_api.interventions reading sources... [ 47%] emod_api.interventions.ccdl reading sources... [ 48%] emod_api.interventions.ccdl_viz reading sources... [ 50%] emod_api.interventions.common reading sources... [ 51%] emod_api.interventions.import_pressure reading sources... [ 52%] emod_api.interventions.migration reading sources... [ 54%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 58%] emod_api.interventions.utils reading sources... [ 59%] emod_api.legacy reading sources... [ 61%] emod_api.legacy.plotAllCharts no display found. Using non-interactive Agg backend reading sources... [ 62%] emod_api.migration reading sources... [ 63%] emod_api.migration.client reading sources... [ 65%] emod_api.migration.client.client reading sources... [ 66%] emod_api.migration.migration reading sources... [ 68%] emod_api.multidim_plotter reading sources... [ 69%] emod_api.peek_camp reading sources... [ 70%] emod_api.schema reading sources... [ 72%] emod_api.schema.dtk_post_process_schema reading sources... [ 73%] emod_api.schema.get_schema reading sources... [ 75%] emod_api.schema_to_class reading sources... [ 76%] emod_api.serialization reading sources... [ 77%] emod_api.serialization.CensusAndModPop reading sources... [ 79%] emod_api.serialization.SerializedPopulation reading sources... [ 80%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 83%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.plot_spat_means reading sources... [ 87%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 90%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] faq reading sources... [ 94%] glossary reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [ 98%] modules reading sources... [100%] plotters looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.channelreports.icj_to_csv emod_api.channelreports.plot_icj_means emod_api.channelreports.plot_prop_report emod_api.channelreports.utils emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.service emod_api.demographics.service.grid_construction emod_api.demographics.service.service emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.legacy emod_api.legacy.plotAllCharts emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.plot_spat_means emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.multidim_plotter emod_api.peek_camp emod_api.schema_to_class glossary plotters done writing... done writing additional files... opensearchdone copying images... [ 20%] images/fertility_over_time_doc.png copying images... [ 40%] images/sweep_plot.png copying images... [ 60%] images/spat_plot.png copying images... [ 80%] images/prop_plot.png copying images... [100%] images/colormap_plot.png copying static files... done copying extra files... done dumping object inventory... done Updating searchtools for Read the Docs search... build succeeded. The HTML page is in ../_readthedocs/htmlzip.