Read the Docs build information Build id: 1948340 Project: institute-for-disease-modeling-idmtools-calibra Version: v1.0.12 Commit: b1356122a734b3898b99d6734f39609c418e64e3 Date: 2024-01-12T23:16:32.256403Z State: finished Success: True [rtd-command-info] start-time: 2024-01-12T23:16:33.443846Z, end-time: 2024-01-12T23:16:35.126013Z, duration: 1, exit-code: 0 git clone --depth 1 git@github.com:InstituteforDiseaseModeling/idmtools_calibra.git . Cloning into '.'... Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. [rtd-command-info] start-time: 2024-01-12T23:16:35.203673Z, end-time: 2024-01-12T23:16:37.147163Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 refs/tags/v1.0.12:refs/tags/v1.0.12 Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. From github.com:InstituteforDiseaseModeling/idmtools_calibra * [new tag] v1.0.12 -> v1.0.12 [rtd-command-info] start-time: 2024-01-12T23:16:37.280230Z, end-time: 2024-01-12T23:16:37.357953Z, duration: 0, exit-code: 0 git checkout --force b1356122a734b3898b99d6734f39609c418e64e3 Note: switching to 'b1356122a734b3898b99d6734f39609c418e64e3'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b135612 Bump patch version 1.0.12 via Jenkins [rtd-command-info] start-time: 2024-01-12T23:16:37.436749Z, end-time: 2024-01-12T23:16:37.491599Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2024-01-12T23:16:37.557622Z, end-time: 2024-01-12T23:16:37.606089Z, duration: 0, exit-code: 0 cat .readthedocs.yml # .readthedocs.yml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Set the version of Python and other tools you might need build: os: ubuntu-20.04 tools: python: "3.9" # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py fail_on_warning: true # Build documentation with MkDocs #mkdocs: # configuration: mkdocs.yml # Optionally build your docs in additional formats such as PDF formats: - htmlzip # Optionally set the version of Python and requirements required to build your docs python: install: - requirements: requirements.txt - requirements: dev_requirements.txt - requirements: docs/requirements.txt - method: setuptools path: . # Optionally rank topics in search results, between -10 (lower) and 10 (higher). # 0 is normal rank, not no rank # search: # ranking: [rtd-command-info] start-time: 2024-01-12T23:16:43.691824Z, end-time: 2024-01-12T23:16:43.761712Z, duration: 0, exit-code: 0 asdf global python 3.9.18 [rtd-command-info] start-time: 2024-01-12T23:16:44.130603Z, end-time: 2024-01-12T23:16:45.269197Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.9.18.final.0-64 in 849ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2024-01-12T23:16:45.337454Z, end-time: 2024-01-12T23:16:58.332183Z, duration: 12, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (23.1) Collecting pip Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/15/aa/3f4c7bcee2057a76562a5b33ecbd199be08cdb4443a02e26bd2c3cf6fc39/pip-23.3.2-py3-none-any.whl (2.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 17.1 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (67.6.1) Collecting setuptools Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/55/3a/5121b58b578a598b269537e09a316ad2a94fdd561a2c6eb75cd68578cc6b/setuptools-69.0.3-py3-none-any.whl (819 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 819.5/819.5 kB 25.9 MB/s eta 0:00:00 Installing collected packages: setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 67.6.1 Uninstalling setuptools-67.6.1: Successfully uninstalled setuptools-67.6.1 Attempting uninstall: pip Found existing installation: pip 23.1 Uninstalling pip-23.1: Successfully uninstalled pip-23.1 Successfully installed pip-23.3.2 setuptools-69.0.3 [rtd-command-info] start-time: 2024-01-12T23:16:58.402590Z, end-time: 2024-01-12T23:17:07.566797Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir sphinx readthedocs-sphinx-ext Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Collecting sphinx Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b2/b6/8ed35256aa530a9d3da15d20bdc0ba888d5364441bb50a5a83ee7827affe/sphinx-7.2.6-py3-none-any.whl (3.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.2/3.2 MB 16.2 MB/s eta 0:00:00 Collecting readthedocs-sphinx-ext Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/64/71/c89e7709a0d4f93af1848e9855112299a820b470d84f917b4dd5998bdd07/readthedocs_sphinx_ext-2.2.5-py2.py3-none-any.whl (11 kB) Collecting sphinxcontrib-applehelp (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c0/0c/261c0949083c0ac635853528bb0070c89e927841d4e533ba0b5563365c06/sphinxcontrib_applehelp-1.0.7-py3-none-any.whl (120 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 120.0/120.0 kB 205.3 MB/s eta 0:00:00 Collecting sphinxcontrib-devhelp (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c0/03/010ac733ec7b7f71c1dc88e7115743ee466560d6d85373b56fb9916e4586/sphinxcontrib_devhelp-1.0.5-py3-none-any.whl (83 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 83.5/83.5 kB 180.4 MB/s eta 0:00:00 Collecting sphinxcontrib-jsmath (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c2/42/4c8646762ee83602e3fb3fbe774c2fac12f317deb0b5dbeeedd2d3ba4b77/sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/28/7a/958f8e3e6abe8219d0d1f1224886de847ab227b218f4a07b61bc337f64be/sphinxcontrib_htmlhelp-2.0.4-py3-none-any.whl (99 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 99.2/99.2 kB 196.9 MB/s eta 0:00:00 Collecting sphinxcontrib-serializinghtml>=1.1.9 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/95/d6/2e0bda62b2a808070ac922d21a950aa2cb5e4fcfb87e5ff5f86bc43a2201/sphinxcontrib_serializinghtml-1.1.9-py3-none-any.whl (92 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 92.7/92.7 kB 184.3 MB/s eta 0:00:00 Collecting sphinxcontrib-qthelp (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1f/e5/1850f3f118e95581c1e30b57028ac979badee1eb29e70ee72b0241f5a185/sphinxcontrib_qthelp-1.0.6-py3-none-any.whl (89 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 89.4/89.4 kB 195.5 MB/s eta 0:00:00 Collecting Jinja2>=3.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/30/6d/6de6be2d02603ab56e72997708809e8a5b0fbfee080735109b40a3564843/Jinja2-3.1.3-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.2/133.2 kB 21.9 MB/s eta 0:00:00 Collecting Pygments>=2.14 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/97/9c/372fef8377a6e340b1704768d20daaded98bf13282b5327beb2e2fe2c7ef/pygments-2.17.2-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 16.3 MB/s eta 0:00:00 Collecting docutils<0.21,>=0.18.1 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/26/87/f238c0670b94533ac0353a4e2a1a771a0cc73277b88bff23d3ae35a256c1/docutils-0.20.1-py3-none-any.whl (572 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 572.7/572.7 kB 17.1 MB/s eta 0:00:00 Collecting snowballstemmer>=2.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ed/dc/c02e01294f7265e63a7315fe086dd1df7dacb9f840a804da846b96d01b96/snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 179.3 MB/s eta 0:00:00 Collecting babel>=2.9 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0d/35/4196b21041e29a42dc4f05866d0c94fa26c9da88ce12c38c2265e42c82fb/Babel-2.14.0-py3-none-any.whl (11.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.0/11.0 MB 16.2 MB/s eta 0:00:00 Collecting alabaster<0.8,>=0.7 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/32/34/d4e1c02d3bee589efb5dfa17f88ea08bdb3e3eac12bc475462aec52ed223/alabaster-0.7.16-py3-none-any.whl (13 kB) Collecting imagesize>=1.3 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ff/62/85c4c919272577931d407be5ba5d71c20f0b616d31a0befe0ae45bb79abd/imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting requests>=2.25.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/70/8e/0e2d847013cb52cd35b38c009bb167a1a26b2ce6cd6965bf26b47bc0bf44/requests-2.31.0-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.6/62.6 kB 176.7 MB/s eta 0:00:00 Collecting packaging>=21.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ec/1a/610693ac4ee14fcdf2d9bf3c493370e4f2ef7ae2e19217d7a237ff42367d/packaging-23.2-py3-none-any.whl (53 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 53.0/53.0 kB 171.3 MB/s eta 0:00:00 Collecting importlib-metadata>=4.8 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c0/8b/d8427f023c081a8303e6ac7209c16e6878f2765d5b59667f3903fbcfd365/importlib_metadata-7.0.1-py3-none-any.whl (23 kB) Collecting zipp>=0.5 (from importlib-metadata>=4.8->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d9/66/48866fc6b158c81cc2bfecc04c480f105c6040e8b077bc54c634b4a67926/zipp-3.17.0-py3-none-any.whl (7.4 kB) Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/de/63/cb7e71984e9159ec5f45b5e81e896c8bdd0e45fe3fc6ce02ab497f0d790e/MarkupSafe-2.1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.25.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/98/69/5d8751b4b670d623aa7a47bef061d69c279e9f922f6705147983aa76c3ce/charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 142.3/142.3 kB 23.6 MB/s eta 0:00:00 Collecting idna<4,>=2.5 (from requests>=2.25.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c2/e7/a82b05cf63a603df6e68d59ae6a68bf5064484a0718ea5033660af4b54a9/idna-3.6-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.6/61.6 kB 171.0 MB/s eta 0:00:00 Collecting urllib3<3,>=1.21.1 (from requests>=2.25.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/96/94/c31f58c7a7f470d5665935262ebd7455c7e4c7782eb525658d3dbf4b9403/urllib3-2.1.0-py3-none-any.whl (104 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 104.6/104.6 kB 206.0 MB/s eta 0:00:00 Collecting certifi>=2017.4.17 (from requests>=2.25.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/64/62/428ef076be88fa93716b576e4a01f919d25968913e817077a386fcbe4f42/certifi-2023.11.17-py3-none-any.whl (162 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 162.5/162.5 kB 18.5 MB/s eta 0:00:00 Installing collected packages: snowballstemmer, zipp, urllib3, sphinxcontrib-jsmath, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, importlib-metadata, readthedocs-sphinx-ext, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, sphinx Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.3 Pygments-2.17.2 alabaster-0.7.16 babel-2.14.0 certifi-2023.11.17 charset-normalizer-3.3.2 docutils-0.20.1 idna-3.6 imagesize-1.4.1 importlib-metadata-7.0.1 packaging-23.2 readthedocs-sphinx-ext-2.2.5 requests-2.31.0 snowballstemmer-2.2.0 sphinx-7.2.6 sphinxcontrib-applehelp-1.0.7 sphinxcontrib-devhelp-1.0.5 sphinxcontrib-htmlhelp-2.0.4 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.6 sphinxcontrib-serializinghtml-1.1.9 urllib3-2.1.0 zipp-3.17.0 [rtd-command-info] start-time: 2024-01-12T23:17:07.650455Z, end-time: 2024-01-12T23:17:45.815384Z, duration: 38, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://packages.idmod.org/api/pypi/pypi-production/simple Collecting fasteners~=0.15 (from -r requirements.txt (line 2)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/61/bf/fd60001b3abc5222d8eaa4a204cd8c0ae78e75adc688f33ce4bf25b7fafa/fasteners-0.19-py3-none-any.whl (18 kB) Collecting geopy~=2.0 (from -r requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e5/15/cf2a69ade4b194aa524ac75112d5caac37414b20a3a03e6865dfe0bd1539/geopy-2.4.1-py3-none-any.whl (125 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.4/125.4 kB 15.8 MB/s eta 0:00:00 Collecting idmtools~=1.7 (from -r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/idmtools/1.7.9/idmtools-1.7.9-py3-none-any.whl (168 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 168.6/168.6 kB 28.6 MB/s eta 0:00:00 Collecting idmtools_platform_comps~=1.7 (from -r requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/idmtools-platform-comps/1.7.9/idmtools_platform_comps-1.7.9-py3-none-any.whl (188 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 188.5/188.5 kB 33.5 MB/s eta 0:00:00 Collecting idmtools-models~=1.7 (from -r requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/idmtools-models/1.7.9/idmtools_models-1.7.9-py3-none-any.whl (24 kB) Collecting scipy~=1.5 (from -r requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/db/86/bf3f01f003224c00dd94d9443d676023ed65d63ea2e34356888dc7fa8f48/scipy-1.11.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (36.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 36.6/36.6 MB 18.6 MB/s eta 0:00:00 Collecting seaborn~=0.11 (from -r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2d/46/cf3fce41ffc543b6e94dadbe6b647559d591df446ec716e72c3b4ce71b34/seaborn-0.13.1-py3-none-any.whl (294 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 294.8/294.8 kB 22.7 MB/s eta 0:00:00 Collecting scikit-learn (from -r requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/25/89/dce01a35d354159dcc901e3c7e7eb3fe98de5cb3639c6cd39518d8830caa/scikit_learn-1.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (10.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.9/10.9 MB 18.7 MB/s eta 0:00:00 Collecting numpy!=1.19.4 (from -r requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ea/ee/7a93594b78d7834d14ff49e74ba79e3f26b85604a542a790db81b1dd2326/numpy-1.26.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 18.8 MB/s eta 0:00:00 Collecting statsmodels~=0.12 (from -r requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a9/70/ead31bc6c1592a5237190994cc7023c7a2b79be287d0b3eb883a48019db0/statsmodels-0.14.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (10.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.8/10.8 MB 18.7 MB/s eta 0:00:00 Collecting geographiclib<3,>=1.52 (from geopy~=2.0->-r requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9f/5a/a26132406f1f40cf51ea349a5f11b0a46cec02a2031ff82e391c2537247a/geographiclib-2.0-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.3/40.3 kB 210.0 MB/s eta 0:00:00 Collecting backoff<2.3,>=1.10.0 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/df/73/b6e24bd22e6720ca8ee9a85a0c4a2971af8497d8f3193fa05390cbd46e09/backoff-2.2.1-py3-none-any.whl (15 kB) Collecting coloredlogs~=15.0 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a7/06/3d6badcf13db419e25b07041d9c7b4a2c331d3f4e7134445ec5df57714cd/coloredlogs-15.0.1-py2.py3-none-any.whl (46 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 46.0/46.0 kB 184.1 MB/s eta 0:00:00 Collecting diskcache~=5.4.0 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a1/c4/80d38cf6852ba87f8b506a91f18b3a485c668f452700689add960d7e2ecc/diskcache-5.4.0-py3-none-any.whl (44 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.0/45.0 kB 207.7 MB/s eta 0:00:00 Collecting filelock (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/81/54/84d42a0bee35edba99dee7b59a8d4970eccdd44b99fe728ed912106fc781/filelock-3.13.1-py3-none-any.whl (11 kB) Collecting more-itertools~=9.1.0 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/85/01/e2678ee4e0d7eed4fd6be9e5b043fff9d22d245d06c8c91def8ced664189/more_itertools-9.1.0-py3-none-any.whl (54 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.2/54.2 kB 212.9 MB/s eta 0:00:00 Collecting pandas>=1.1.4 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/bc/f8/2aa75ae200bdb9dc6967712f26628a06bf45d3ad94cbbf6fb4962ada15a3/pandas-2.1.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.3/12.3 MB 18.7 MB/s eta 0:00:00 Collecting pipreqs<0.5,>=0.4.10 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d9/ea/74c89d786cf3403bfbf8fb70142fdf501af9517d0bb8c1acce3ee5ab613e/pipreqs-0.4.13-py2.py3-none-any.whl (33 kB) Collecting pluggy~=1.2.0 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/51/32/4a79112b8b87b21450b066e102d6608907f4c885ed7b04c3fdb085d4d6ae/pluggy-1.2.0-py3-none-any.whl (17 kB) Collecting PyYaml<6.1,>=5.3.0 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7d/39/472f2554a0f1e825bd7c5afc11c817cd7a2f3657460f7159f691fbb37c51/PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 738.9/738.9 kB 21.3 MB/s eta 0:00:00 Collecting tabulate<0.10,>=0.8.9 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/40/44/4a5f08c96eb108af5cb50b41f76142f0afa346dfa99d5296fe7202a11854/tabulate-0.9.0-py3-none-any.whl (35 kB) Collecting tqdm<5,>=4.52.0 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/00/e5/f12a80907d0884e6dff9c16d0c0114d81b8cd07dc3ae54c5e962cc83037e/tqdm-4.66.1-py3-none-any.whl (78 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.3/78.3 kB 230.8 MB/s eta 0:00:00 Requirement already satisfied: jinja2~=3.1.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7->-r requirements.txt (line 4)) (3.1.3) Collecting packaging<22.0,>=20.4 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/05/8e/8de486cbd03baba4deef4142bd643a3e7bbe954a784dc1bb17142572d127/packaging-21.3-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.8/40.8 kB 208.9 MB/s eta 0:00:00 Collecting pygit2<=1.10.1,>=1.4.0 (from idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1b/4a/06d4b23dfb374e5de0f5fc3ec1d469a68e13d942ced6b978fa6d5826f35e/pygit2-1.10.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 18.3 MB/s eta 0:00:00 Collecting pyCOMPS~=2.10 (from idmtools_platform_comps~=1.7->-r requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/pyCOMPS/2.10.0/pyCOMPS-2.10.0-py2.py3-none-any.whl (74 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 74.5/74.5 kB 224.3 MB/s eta 0:00:00 Collecting natsort~=8.4.0 (from idmtools_platform_comps~=1.7->-r requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ef/82/7a9d0550484a62c6da82858ee9419f3dd1ccc9aa1c26a1e43da3ecd20b0d/natsort-8.4.0-py3-none-any.whl (38 kB) Collecting matplotlib!=3.6.1,>=3.4 (from seaborn~=0.11->-r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/53/1f/653d60d2ec81a6095fa3e571cf2de57742bab8a51a5c01de26730ce3dc53/matplotlib-3.8.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.6/11.6 MB 18.7 MB/s eta 0:00:00 Collecting joblib>=1.1.1 (from scikit-learn->-r requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/10/40/d551139c85db202f1f384ba8bcf96aca2f329440a844f924c8a0040b6d02/joblib-1.3.2-py3-none-any.whl (302 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 302.2/302.2 kB 23.3 MB/s eta 0:00:00 Collecting threadpoolctl>=2.0.0 (from scikit-learn->-r requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/81/12/fd4dea011af9d69e1cad05c75f3f7202cdcbeac9b712eea58ca779a72865/threadpoolctl-3.2.0-py3-none-any.whl (15 kB) Collecting patsy>=0.5.4 (from statsmodels~=0.12->-r requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/43/f3/1d311a09c34f14f5973bb0bb0dc3a6e007e1eda90b5492d082689936ca51/patsy-0.5.6-py2.py3-none-any.whl (233 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 233.9/233.9 kB 35.6 MB/s eta 0:00:00 Collecting humanfriendly>=9.1 (from coloredlogs~=15.0->idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f0/0f/310fb31e39e2d734ccaa2c0fb981ee41f7bd5056ce9bc29b2248bd569169/humanfriendly-10.0-py2.py3-none-any.whl (86 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 86.8/86.8 kB 233.6 MB/s eta 0:00:00 Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from jinja2~=3.1.2->idmtools~=1.7->-r requirements.txt (line 4)) (2.1.3) Collecting contourpy>=1.0.1 (from matplotlib!=3.6.1,>=3.4->seaborn~=0.11->-r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a9/ba/d8fd1380876f1e9114157606302e3644c85f6d116aeba354c212ee13edc7/contourpy-1.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (310 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 311.0/311.0 kB 24.1 MB/s eta 0:00:00 Collecting cycler>=0.10 (from matplotlib!=3.6.1,>=3.4->seaborn~=0.11->-r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e7/05/c19819d5e3d95294a6f5947fb9b9629efb316b96de511b418c53d245aae6/cycler-0.12.1-py3-none-any.whl (8.3 kB) Collecting fonttools>=4.22.0 (from matplotlib!=3.6.1,>=3.4->seaborn~=0.11->-r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/de/64/dddc0df6a9a958dc76ed75b820de3773a06695af30ffb2f4116fe4640404/fonttools-4.47.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 18.8 MB/s eta 0:00:00 Collecting kiwisolver>=1.3.1 (from matplotlib!=3.6.1,>=3.4->seaborn~=0.11->-r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c0/a8/841594f11d0b88d8aeb26991bc4dac38baa909dc58d0c4262a4f7893bcbf/kiwisolver-1.4.5-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 18.3 MB/s eta 0:00:00 Collecting pillow>=8 (from matplotlib!=3.6.1,>=3.4->seaborn~=0.11->-r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/87/0d/8f5136a5481731c342a901ff155c587ce7804114db069345e1894ab4978a/pillow-10.2.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 19.0 MB/s eta 0:00:00 Collecting pyparsing>=2.3.1 (from matplotlib!=3.6.1,>=3.4->seaborn~=0.11->-r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/39/92/8486ede85fcc088f1b3dba4ce92dd29d126fd96b0008ea213167940a2475/pyparsing-3.1.1-py3-none-any.whl (103 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 103.1/103.1 kB 236.4 MB/s eta 0:00:00 Collecting python-dateutil>=2.7 (from matplotlib!=3.6.1,>=3.4->seaborn~=0.11->-r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/36/7a/87837f39d0296e723bb9b62bbb257d0355c7f6128853c78955f57342a56d/python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 247.7/247.7 kB 38.4 MB/s eta 0:00:00 Collecting importlib-resources>=3.2.0 (from matplotlib!=3.6.1,>=3.4->seaborn~=0.11->-r requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/93/e8/facde510585869b5ec694e8e0363ffe4eba067cb357a8398a55f6a1f8023/importlib_resources-6.1.1-py3-none-any.whl (33 kB) Collecting pytz>=2020.1 (from pandas>=1.1.4->idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/32/4d/aaf7eff5deb402fd9a24a1449a8119f00d74ae9c2efa79f8ef9994261fc2/pytz-2023.3.post1-py2.py3-none-any.whl (502 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 502.5/502.5 kB 23.9 MB/s eta 0:00:00 Collecting tzdata>=2022.1 (from pandas>=1.1.4->idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a3/fb/52b62131e21b24ee297e4e95ed41eba29647dad0e0051a92bb66b43c70ff/tzdata-2023.4-py2.py3-none-any.whl (346 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 346.6/346.6 kB 25.7 MB/s eta 0:00:00 Collecting six (from patsy>=0.5.4->statsmodels~=0.12->-r requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d9/5a/e7c31adbe875f2abbb91bd84cf2dc52d792b5a01506781dbcf25c91daf11/six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting docopt (from pipreqs<0.5,>=0.4.10->idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a2/55/8f8cab2afd404cf578136ef2cc5dfb50baa1761b68c9da1fb1e4eed343c9/docopt-0.6.2.tar.gz (25 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting yarg (from pipreqs<0.5,>=0.4.10->idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8b/90/89a2ff242ccab6a24fbab18dbbabc67c51a6f0ed01f9a0f41689dc177419/yarg-0.1.9-py2.py3-none-any.whl (19 kB) Requirement already satisfied: requests>=2.11.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from pyCOMPS~=2.10->idmtools_platform_comps~=1.7->-r requirements.txt (line 5)) (2.31.0) Collecting future>=0.16.0 (from pyCOMPS~=2.10->idmtools_platform_comps~=1.7->-r requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8f/2e/cf6accf7415237d6faeeebdc7832023c90e0282aa16fd3263db0eb4715ec/future-0.18.3.tar.gz (840 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 840.9/840.9 kB 20.5 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting xdg>=4.0.1 (from pyCOMPS~=2.10->idmtools_platform_comps~=1.7->-r requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/dd/54/3516c1cf349060fc3578686d271eba242f10ec00b4530c2985af9faac49b/xdg-6.0.0-py3-none-any.whl (3.9 kB) Collecting cffi>=1.9.1 (from pygit2<=1.10.1,>=1.4.0->idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ea/ac/e9e77bc385729035143e54cc8c4785bd480eaca9df17565963556b0b7a93/cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 443.4/443.4 kB 23.0 MB/s eta 0:00:00 Collecting pycparser (from cffi>=1.9.1->pygit2<=1.10.1,>=1.4.0->idmtools~=1.7->-r requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/62/d5/5f610ebe421e85889f2e55e33b7f9a6795bd982198517d912eb1c76e1a53/pycparser-2.21-py2.py3-none-any.whl (118 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 118.7/118.7 kB 235.4 MB/s eta 0:00:00 Requirement already satisfied: zipp>=3.1.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from importlib-resources>=3.2.0->matplotlib!=3.6.1,>=3.4->seaborn~=0.11->-r requirements.txt (line 8)) (3.17.0) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from requests>=2.11.1->pyCOMPS~=2.10->idmtools_platform_comps~=1.7->-r requirements.txt (line 5)) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from requests>=2.11.1->pyCOMPS~=2.10->idmtools_platform_comps~=1.7->-r requirements.txt (line 5)) (3.6) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from requests>=2.11.1->pyCOMPS~=2.10->idmtools_platform_comps~=1.7->-r requirements.txt (line 5)) (2.1.0) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from requests>=2.11.1->pyCOMPS~=2.10->idmtools_platform_comps~=1.7->-r requirements.txt (line 5)) (2023.11.17) Building wheels for collected packages: future, docopt Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.3-py3-none-any.whl size=492022 sha256=ca38d8c4937aa9bdfa21a2fe25d5be3aa21df1a44f43cf06074bf98b55362ccf Stored in directory: /tmp/pip-ephem-wheel-cache-bkw5px0m/wheels/2f/cc/b7/c2afbd9aa308238e24770b186ce812c515ff12207dd4d176b4 Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13707 sha256=75061f230dcf90f1d19bd8ab1ba1f59901c4e6f07bd635bc68bd26991f5e9910 Stored in directory: /tmp/pip-ephem-wheel-cache-bkw5px0m/wheels/8d/59/3a/894ec22b85063f7b617ea5956e702fa119c6b14d7e6208a419 Successfully built future docopt Installing collected packages: pytz, docopt, xdg, tzdata, tqdm, threadpoolctl, tabulate, six, PyYaml, pyparsing, pycparser, pluggy, pillow, numpy, natsort, more-itertools, kiwisolver, joblib, importlib-resources, humanfriendly, geographiclib, future, fonttools, filelock, fasteners, diskcache, cycler, backoff, yarg, scipy, python-dateutil, pyCOMPS, patsy, packaging, geopy, contourpy, coloredlogs, cffi, scikit-learn, pygit2, pipreqs, pandas, matplotlib, statsmodels, seaborn, idmtools, idmtools_platform_comps, idmtools-models Attempting uninstall: packaging Found existing installation: packaging 23.2 Uninstalling packaging-23.2: Successfully uninstalled packaging-23.2 Successfully installed PyYaml-6.0.1 backoff-2.2.1 cffi-1.16.0 coloredlogs-15.0.1 contourpy-1.2.0 cycler-0.12.1 diskcache-5.4.0 docopt-0.6.2 fasteners-0.19 filelock-3.13.1 fonttools-4.47.2 future-0.18.3 geographiclib-2.0 geopy-2.4.1 humanfriendly-10.0 idmtools-1.7.9 idmtools-models-1.7.9 idmtools_platform_comps-1.7.9 importlib-resources-6.1.1 joblib-1.3.2 kiwisolver-1.4.5 matplotlib-3.8.2 more-itertools-9.1.0 natsort-8.4.0 numpy-1.26.3 packaging-21.3 pandas-2.1.4 patsy-0.5.6 pillow-10.2.0 pipreqs-0.4.13 pluggy-1.2.0 pyCOMPS-2.10.0 pycparser-2.21 pygit2-1.10.1 pyparsing-3.1.1 python-dateutil-2.8.2 pytz-2023.3.post1 scikit-learn-1.3.2 scipy-1.11.4 seaborn-0.13.1 six-1.16.0 statsmodels-0.14.1 tabulate-0.9.0 threadpoolctl-3.2.0 tqdm-4.66.1 tzdata-2023.4 xdg-6.0.0 yarg-0.1.9 [rtd-command-info] start-time: 2024-01-12T23:17:45.898075Z, end-time: 2024-01-12T23:17:54.167849Z, duration: 8, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r dev_requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Collecting allure-pytest~=2.8.19 (from -r dev_requirements.txt (line 1)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/15/1d/e520e2c6d37c26608895214aa950317043606726c7f70ad9926fa6a18b87/allure_pytest-2.8.40-py3-none-any.whl (9.6 kB) Collecting junitparser~=1.6.2 (from -r dev_requirements.txt (line 2)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/01/96/e3e973c23fb90eb69163de48040497ae3ed550042b50559736e69ad42274/junitparser-1.6.3-py2.py3-none-any.whl (10 kB) Collecting livereload~=2.6.3 (from -r dev_requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e3/05/ed67ccf462fff0b559e6ea7b3e3fcb20dec9d57bf90b5c5e72a6f316183e/livereload-2.6.3-py2.py3-none-any.whl (24 kB) Collecting pytest-cache~=1.0 (from -r dev_requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d1/15/082fd0428aab33d2bafa014f3beb241830427ba803a8912a5aaeaf3a5663/pytest-cache-1.0.tar.gz (16 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pytest-cov~=2.10.1 (from -r dev_requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e5/18/401594af67eda194a8b9167208621761927c937db7d60292608342bbac0a/pytest_cov-2.10.1-py2.py3-none-any.whl (19 kB) Collecting pytest-html~=2.1.1 (from -r dev_requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/00/a7/34f195c514d39b4453619b3eb284989e5adb09a2a68ac09ce3779f9b9478/pytest_html-2.1.1-py2.py3-none-any.whl (16 kB) Collecting pytest-runner~=5.2 (from -r dev_requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1e/93/7737b48a38f5114d1fe139642d88c4524827a8dfafb7753a9746e05620fb/pytest_runner-5.3.2-py3-none-any.whl (7.2 kB) Collecting pytest-timeout~=1.4.2 (from -r dev_requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/46/df/97cc0b5b8b53da0e265acd0aeecfc0c279e950a029acd2d7b4e54b00b25f/pytest_timeout-1.4.2-py2.py3-none-any.whl (10 kB) Collecting pytest-xdist~=2.1 (from -r dev_requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/21/08/b1945d4b4986eb1aa10cf84efc5293bba39da80a2f95db3573dd90678408/pytest_xdist-2.5.0-py3-none-any.whl (41 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 41.7/41.7 kB 141.4 MB/s eta 0:00:00 Collecting pytest~=6.1.2 (from -r dev_requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b1/ee/53945d50284906adb1e613fabf2e1b8b25926e8676854bb25b93564c0ce7/pytest-6.1.2-py3-none-any.whl (272 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 272.4/272.4 kB 18.0 MB/s eta 0:00:00 Collecting xmlrunner~=1.7.7 (from -r dev_requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/57/c0/a19e29bc6038a56bb690549573af6ea11a9d2a5c07aff2e27ed308c2cab9/xmlrunner-1.7.7.tar.gz (5.6 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: six>=1.9.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from allure-pytest~=2.8.19->-r dev_requirements.txt (line 1)) (1.16.0) Collecting allure-python-commons==2.8.40 (from allure-pytest~=2.8.19->-r dev_requirements.txt (line 1)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1c/77/fae3fb2237997e9ba8105c583faf6daa7b6dbfc7370a8b06472315a3758b/allure_python_commons-2.8.40-py3-none-any.whl (15 kB) Collecting attrs>=16.0.0 (from allure-python-commons==2.8.40->allure-pytest~=2.8.19->-r dev_requirements.txt (line 1)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e0/44/827b2a91a5816512fcaf3cc4ebc465ccd5d598c45cefa6703fcf4a79018f/attrs-23.2.0-py3-none-any.whl (60 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.8/60.8 kB 213.1 MB/s eta 0:00:00 Requirement already satisfied: pluggy>=0.4.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from allure-python-commons==2.8.40->allure-pytest~=2.8.19->-r dev_requirements.txt (line 1)) (1.2.0) Requirement already satisfied: future in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from junitparser~=1.6.2->-r dev_requirements.txt (line 2)) (0.18.3) Collecting tornado (from livereload~=2.6.3->-r dev_requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9f/12/11d0a757bb67278d3380d41955ae98527d5ad18330b2edbdc8de222b569b/tornado-6.4-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (435 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 435.4/435.4 kB 18.5 MB/s eta 0:00:00 Collecting execnet>=1.1.dev1 (from pytest-cache~=1.0->-r dev_requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e8/9c/a079946da30fac4924d92dbc617e5367d454954494cf1e71567bcc4e00ee/execnet-2.0.2-py3-none-any.whl (37 kB) Collecting coverage>=4.4 (from pytest-cov~=2.10.1->-r dev_requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/dc/9a/825705f435ef469c780045746c725f974ca8b059380df28b6331995a2ae1/coverage-7.4.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (232 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 232.8/232.8 kB 32.7 MB/s eta 0:00:00 Collecting pytest-metadata (from pytest-html~=2.1.1->-r dev_requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/5c/a0/32d2a73f8428402d3017aec0cbb902ee21b363f421dc111d755c97332904/pytest_metadata-3.0.0-py3-none-any.whl (10 kB) INFO: pip is looking at multiple versions of pytest-xdist to determine which version is compatible with other requirements. This could take a while. Collecting pytest-xdist~=2.1 (from -r dev_requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2d/27/ff9d67d93911febc451c1c7d87665af4d110432679b5d5b525d447c739a8/pytest_xdist-2.4.0-py3-none-any.whl (38 kB) Collecting pytest-forked (from pytest-xdist~=2.1->-r dev_requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f4/af/9c0bda43e486a3c9bf1e0f876d0f241bc3f229d7d65d09331a0868db9629/pytest_forked-1.6.0-py3-none-any.whl (4.9 kB) Collecting iniconfig (from pytest~=6.1.2->-r dev_requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ef/a6/62565a6e1cf69e10f5727360368e451d4b7f58beeac6173dc9db836a5b46/iniconfig-2.0.0-py3-none-any.whl (5.9 kB) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from pytest~=6.1.2->-r dev_requirements.txt (line 10)) (21.3) Collecting pluggy>=0.4.0 (from allure-python-commons==2.8.40->allure-pytest~=2.8.19->-r dev_requirements.txt (line 1)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a0/28/85c7aa31b80d150b772fbe4a229487bc6644da9ccb7e427dd8cc60cb8a62/pluggy-0.13.1-py2.py3-none-any.whl (18 kB) Collecting py>=1.8.2 (from pytest~=6.1.2->-r dev_requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f6/f0/10642828a8dfb741e5f3fbaac830550a518a775c7fff6f04a007259b0548/py-1.11.0-py2.py3-none-any.whl (98 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 98.7/98.7 kB 221.8 MB/s eta 0:00:00 Collecting toml (from pytest~=6.1.2->-r dev_requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/44/6f/7120676b6d73228c96e17f1f794d8ab046fc910d781c8d151120c3f1569e/toml-0.10.2-py2.py3-none-any.whl (16 kB) Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from packaging->pytest~=6.1.2->-r dev_requirements.txt (line 10)) (3.1.1) INFO: pip is looking at multiple versions of pytest-metadata to determine which version is compatible with other requirements. This could take a while. Collecting pytest-metadata (from pytest-html~=2.1.1->-r dev_requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e1/00/c8175f054e801b5d8135ef2d0d7e4ad508c0af94d81e521431c23cf56e8f/pytest_metadata-2.0.4-py3-none-any.whl (9.9 kB) Building wheels for collected packages: pytest-cache, xmlrunner Building wheel for pytest-cache (setup.py): started Building wheel for pytest-cache (setup.py): finished with status 'done' Created wheel for pytest-cache: filename=pytest_cache-1.0-py3-none-any.whl size=6933 sha256=9edc908997b2287c8a49e3cc654aedb3f2e1adda803ad40bc3e7657db14cbc85 Stored in directory: /tmp/pip-ephem-wheel-cache-pjdciu2b/wheels/a0/9b/11/063b8932b0ded325750c8918213559794be135e2d3494b7f55 Building wheel for xmlrunner (setup.py): started Building wheel for xmlrunner (setup.py): finished with status 'done' Created wheel for xmlrunner: filename=xmlrunner-1.7.7-py3-none-any.whl size=6222 sha256=7667cec28169870e74ecf8d3cb80d078f1ccf256b87298efb24cc3af665984b4 Stored in directory: /tmp/pip-ephem-wheel-cache-pjdciu2b/wheels/a4/a4/74/ecccb934115344497d64c4f2580518f026a59db2b252531496 Successfully built pytest-cache xmlrunner Installing collected packages: xmlrunner, tornado, toml, pytest-runner, py, pluggy, junitparser, iniconfig, execnet, coverage, attrs, pytest, livereload, allure-python-commons, pytest-timeout, pytest-metadata, pytest-forked, pytest-cov, pytest-cache, allure-pytest, pytest-xdist, pytest-html Attempting uninstall: pluggy Found existing installation: pluggy 1.2.0 Uninstalling pluggy-1.2.0: Successfully uninstalled pluggy-1.2.0 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. idmtools 1.7.9 requires pluggy~=1.2.0, but you have pluggy 0.13.1 which is incompatible. Successfully installed allure-pytest-2.8.40 allure-python-commons-2.8.40 attrs-23.2.0 coverage-7.4.0 execnet-2.0.2 iniconfig-2.0.0 junitparser-1.6.3 livereload-2.6.3 pluggy-0.13.1 py-1.11.0 pytest-6.1.2 pytest-cache-1.0 pytest-cov-2.10.1 pytest-forked-1.6.0 pytest-html-2.1.1 pytest-metadata-2.0.4 pytest-runner-5.3.2 pytest-timeout-1.4.2 pytest-xdist-2.4.0 toml-0.10.2 tornado-6.4 xmlrunner-1.7.7 [rtd-command-info] start-time: 2024-01-12T23:17:54.242929Z, end-time: 2024-01-12T23:18:20.289585Z, duration: 26, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://packages.idmod.org/api/pypi/pypi-production/simple Collecting click~=8.0.1 (from -r docs/requirements.txt (line 2)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/4a/a8/0b2ced25639fb20cc1c9784de90a8c25f9504a7f18cd8b5397bd61696d7d/click-8.0.4-py3-none-any.whl (97 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 97.5/97.5 kB 9.8 MB/s eta 0:00:00 Requirement already satisfied: idmtools-models~=1.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from -r docs/requirements.txt (line 3)) (1.7.9) Collecting sphinx~=6.2.1 (from -r docs/requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/5f/d8/45ba6097c39ba44d9f0e1462fb232e13ca4ddb5aea93a385dcfa964687da/sphinx-6.2.1-py3-none-any.whl (3.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.0/3.0 MB 15.8 MB/s eta 0:00:00 Collecting sphinx-rtd-theme~=1.2.2 (from -r docs/requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/85/32/9ccebf3a82c085e8fc12b67cc3dbf840789fb6c7835ed0d61686d6509aa9/sphinx_rtd_theme-1.2.2-py2.py3-none-any.whl (2.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 15.8 MB/s eta 0:00:00 Collecting sphinxcontrib-napoleon~=0.7 (from -r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/75/f2/6b7627dfe7b4e418e295e254bb15c3a6455f11f8c0ad0d43113f678049c3/sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting plantweb~=1.2.1 (from -r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d6/6f/9ab1a1c3e33aaa0c0931983578c09336b092c75dce777ea666d3032f756e/plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.17 (from -r docs/requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/30/ee/b7be4b3f45f4e36bfa6c444cd234098e0d09880379c67a43e6bb9ab99a86/sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting nbsphinx~=0.9.2 (from -r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a3/a0/ca4aeb2f7f2608a483459a3bb486da250a7eb23eb76c9a0af154395f0cb2/nbsphinx-0.9.3-py3-none-any.whl (31 kB) Collecting jupyterlab~=4.0.2 (from -r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/cb/26/f4de12ccf86b7a714cbd972036676319729cf50451b9b380f6d14893521e/jupyterlab-4.0.10-py3-none-any.whl (9.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.2/9.2 MB 15.3 MB/s eta 0:00:00 Collecting myst-parser~=2.0.0 (from -r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1d/f6/6d61a023d758f488e36638076e8a4ec4447a2cdf86938cf6c60cf1c860e6/myst_parser-2.0.0-py3-none-any.whl (77 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.2/77.2 kB 206.3 MB/s eta 0:00:00 Collecting readthedocs-sphinx-search~=0.3.1 (from -r docs/requirements.txt (line 12)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f2/69/31af8bf08dfb77465e6b92a7b967273ac5c1fbc20d3005027a90d911efa2/readthedocs_sphinx_search-0.3.1-py3-none-any.whl (21 kB) Collecting sphinx-copybutton~=0.5.2 (from -r docs/requirements.txt (line 13)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9e/48/1ea60e74949eecb12cdd6ac43987f9fd331156388dcc2319b45e2ebb81bf/sphinx_copybutton-0.5.2-py3-none-any.whl (13 kB) Collecting pygithub~=1.57 (from -r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2c/71/aff5465d9e3d448a5d4beab1dc7c8dec72037e3ae7e0d856ee08538dc934/PyGithub-1.59.1-py3-none-any.whl (342 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 342.2/342.2 kB 18.6 MB/s eta 0:00:00 Requirement already satisfied: idmtools~=1.7.9 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (1.7.9) Requirement already satisfied: jinja2~=3.1.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (3.1.3) Requirement already satisfied: sphinxcontrib-applehelp in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (1.0.7) Requirement already satisfied: sphinxcontrib-devhelp in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (1.0.5) Requirement already satisfied: sphinxcontrib-jsmath in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (1.0.1) Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (2.0.4) Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (1.1.9) Requirement already satisfied: sphinxcontrib-qthelp in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (1.0.6) Requirement already satisfied: Pygments>=2.13 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (2.17.2) Collecting docutils<0.20,>=0.18.1 (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/93/69/e391bd51bc08ed9141ecd899a0ddb61ab6465309f1eb470905c0c8868081/docutils-0.19-py3-none-any.whl (570 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 570.5/570.5 kB 15.9 MB/s eta 0:00:00 Requirement already satisfied: snowballstemmer>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (2.2.0) Requirement already satisfied: babel>=2.9 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (2.14.0) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (0.7.16) Requirement already satisfied: imagesize>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (1.4.1) Requirement already satisfied: requests>=2.25.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (2.31.0) Requirement already satisfied: packaging>=21.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (21.3) Requirement already satisfied: importlib-metadata>=4.8 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (7.0.1) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8d/14/69b4bad34e3f250afe29a854da03acb6747711f3df06c359fa053fae4e76/docutils-0.18.1-py2.py3-none-any.whl (570 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 570.0/570.0 kB 16.0 MB/s eta 0:00:00 Collecting sphinxcontrib-jquery<5,>=4 (from sphinx-rtd-theme~=1.2.2->-r docs/requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/76/85/749bd22d1a68db7291c89e2ebca53f4306c3f205853cf31e9de279034c3c/sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.1/121.1 kB 199.8 MB/s eta 0:00:00 Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 6)) (1.16.0) Collecting pockets>=0.3 (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e9/2f/a4583c70fbd8cd04910e2884bcc2bdd670e884061f7b4d70bc13e632a993/pockets-0.9.1-py2.py3-none-any.whl (26 kB) Collecting nbconvert!=5.4 (from nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/17/d3/7d08470a59e591f73afbc685d910886f96a38be86df3ca95398c491b8d23/nbconvert-7.14.1-py3-none-any.whl (256 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 256.4/256.4 kB 25.5 MB/s eta 0:00:00 Collecting traitlets>=5 (from nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/45/34/5dc77fdc7bb4bd198317eea5679edf9cc0a186438b5b19dbb9062fb0f4d5/traitlets-5.14.1-py3-none-any.whl (85 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 85.4/85.4 kB 200.7 MB/s eta 0:00:00 Collecting nbformat (from nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f4/e7/ef30a90b70eba39e675689b9eaaa92530a71d7435ab8f9cae520814e0caf/nbformat-5.9.2-py3-none-any.whl (77 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.6/77.6 kB 192.7 MB/s eta 0:00:00 Collecting async-lru>=1.0.0 (from jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fa/9f/3c3503693386c4b0f245eaf5ca6198e3b28879ca0a40bde6b0e319793453/async_lru-2.0.4-py3-none-any.whl (6.1 kB) Collecting ipykernel (from jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b0/71/348c659f0fbbf526ca77fae9fd31d43a3c90d4d60ae3df6d477055ee90d5/ipykernel-6.28.0-py3-none-any.whl (114 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 114.1/114.1 kB 216.9 MB/s eta 0:00:00 Collecting jupyter-core (from jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/86/a1/354cade6907f2fbbd32d89872ec64b62406028e7645ac13acfdb5732829e/jupyter_core-5.7.1-py3-none-any.whl (28 kB) Collecting jupyter-lsp>=2.0.0 (from jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a6/b9/bb98cc91cda084a2756938682d02bdaf221a38f30b7126ba65ed7cde3ea6/jupyter_lsp-2.2.1-py3-none-any.whl (66 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 66.0/66.0 kB 187.8 MB/s eta 0:00:00 Collecting jupyter-server<3,>=2.4.0 (from jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f9/12/92ddd4af39e6c994722f6a016602647dbab74c3a2ff661b257e44f3ce27d/jupyter_server-2.12.4-py3-none-any.whl (380 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 380.3/380.3 kB 20.7 MB/s eta 0:00:00 Collecting jupyterlab-server<3,>=2.19.0 (from jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a2/97/abbbe35fc67b6f9423309988f2e411f7cb117b08321866d3d8b720f4c0d4/jupyterlab_server-2.25.2-py3-none-any.whl (58 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.9/58.9 kB 183.1 MB/s eta 0:00:00 Collecting notebook-shim>=0.2 (from jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f4/79/73250372e5bbab63018b41b02d5cc6b395655ec6c1254e477ef7c913aada/notebook_shim-0.2.3-py3-none-any.whl (13 kB) Collecting tomli (from jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/97/75/10a9ebee3fd790d20926a90a2547f0bf78f371b2f13aa822c759680ca7b9/tomli-2.0.1-py3-none-any.whl (12 kB) Requirement already satisfied: tornado>=6.2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) (6.4) Collecting markdown-it-py~=3.0 (from myst-parser~=2.0.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/42/d7/1ec15b46af6af88f19b8e5ffea08fa375d433c998b8a7639e76935c14f1f/markdown_it_py-3.0.0-py3-none-any.whl (87 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 87.5/87.5 kB 203.4 MB/s eta 0:00:00 Collecting mdit-py-plugins~=0.4 (from myst-parser~=2.0.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e5/3c/fe85f19699a7b40c8f9ce8ecee7e269b9b3c94099306df6f9891bdefeedd/mdit_py_plugins-0.4.0-py3-none-any.whl (54 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.1/54.1 kB 179.4 MB/s eta 0:00:00 Requirement already satisfied: pyyaml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from myst-parser~=2.0.0->-r docs/requirements.txt (line 11)) (6.0.1) Collecting deprecated (from pygithub~=1.57->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/20/8d/778b7d51b981a96554f29136cd59ca7880bf58094338085bcf2a979a0e6a/Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->pygithub~=1.57->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2b/4f/e04a8067c7c96c364cef7ef73906504e2f40d690811c021e1a1901473a19/PyJWT-2.8.0-py3-none-any.whl (22 kB) Collecting pynacl>=1.4.0 (from pygithub~=1.57->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ee/87/f1bb6a595f14a327e8285b9eb54d41fef76c585a0edef0a45f6fc95de125/PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 856.7/856.7 kB 16.3 MB/s eta 0:00:00 Collecting typing-extensions>=4.0.0 (from async-lru>=1.0.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b7/f4/6a90020cd2d93349b442bfcb657d0dc91eee65491600b2cb1d388bc98e6b/typing_extensions-4.9.0-py3-none-any.whl (32 kB) Requirement already satisfied: backoff<2.3,>=1.10.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (2.2.1) Requirement already satisfied: coloredlogs~=15.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (15.0.1) Requirement already satisfied: diskcache~=5.4.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (5.4.0) Requirement already satisfied: filelock in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (3.13.1) Requirement already satisfied: more-itertools~=9.1.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (9.1.0) Requirement already satisfied: numpy!=1.19.4 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (1.26.3) Requirement already satisfied: pandas>=1.1.4 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (2.1.4) Requirement already satisfied: pipreqs<0.5,>=0.4.10 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (0.4.13) Collecting pluggy~=1.2.0 (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/51/32/4a79112b8b87b21450b066e102d6608907f4c885ed7b04c3fdb085d4d6ae/pluggy-1.2.0-py3-none-any.whl (17 kB) Requirement already satisfied: tabulate<0.10,>=0.8.9 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (0.9.0) Requirement already satisfied: tqdm<5,>=4.52.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (4.66.1) Requirement already satisfied: pygit2<=1.10.1,>=1.4.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (1.10.1) Requirement already satisfied: zipp>=0.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from importlib-metadata>=4.8->sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (3.17.0) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from jinja2~=3.1.2->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (2.1.3) Collecting anyio>=3.1.0 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/bf/cd/d6d9bb1dadf73e7af02d18225cbd2c93f8552e13130484f1c8dcfece292b/anyio-4.2.0-py3-none-any.whl (85 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 85.5/85.5 kB 203.3 MB/s eta 0:00:00 Collecting argon2-cffi (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a4/6a/e8a041599e78b6b3752da48000b14c8d1e8a04ded09c88c714ba047f34f5/argon2_cffi-23.1.0-py3-none-any.whl (15 kB) Collecting jupyter-client>=7.4.4 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/43/ae/5f4f72980765e2e5e02b260f9c53bcc706cefa7ac9c8d7240225c55788d4/jupyter_client-8.6.0-py3-none-any.whl (105 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 105.9/105.9 kB 215.7 MB/s eta 0:00:00 Collecting jupyter-events>=0.9.0 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e3/55/0c1aa72f4317e826a471dc4adc3036acd11d496ded68c4bbac2a88551519/jupyter_events-0.9.0-py3-none-any.whl (18 kB) Collecting jupyter-server-terminals (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/13/50/9e4688558eb1a20d16e99171af9026be27d31a8b212c241595241736811a/jupyter_server_terminals-0.5.1-py3-none-any.whl (13 kB) Collecting overrides (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/da/28/3fa6ef8297302fc7b3844980b6c5dbc71cdbd4b61e9b2591234214d5ab39/overrides-7.4.0-py3-none-any.whl (17 kB) Collecting prometheus-client (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/bb/9f/ad934418c48d01269fc2af02229ff64bcf793fd5d7f8f82dc5e7ea7ef149/prometheus_client-0.19.0-py3-none-any.whl (54 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.2/54.2 kB 177.0 MB/s eta 0:00:00 Collecting pyzmq>=24 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/76/8b/6fca99e22c6316917de32b17be299dea431544209d619da16b6d9ec85c83/pyzmq-25.1.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 16.0 MB/s eta 0:00:00 Collecting send2trash>=1.8.2 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a9/78/e4df1e080ed790acf3a704edf521006dd96b9841bd2e2a462c0d255e0565/Send2Trash-1.8.2-py3-none-any.whl (18 kB) Collecting terminado>=0.8.3 (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/69/df/deebc9fb14a49062a3330f673e80b100e665b54d998163b3f62620b6240c/terminado-0.18.0-py3-none-any.whl (14 kB) Collecting websocket-client (from jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1e/70/1e88138a9afbed1d37093b85f0bebc3011623c4f47c166431599fe9d6c93/websocket_client-1.7.0-py3-none-any.whl (58 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.5/58.5 kB 169.3 MB/s eta 0:00:00 Collecting platformdirs>=2.5 (from jupyter-core->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/be/53/42fe5eab4a09d251a76d0043e018172db324a23fcdac70f77a551c11f618/platformdirs-4.1.0-py3-none-any.whl (17 kB) Collecting json5>=0.9.0 (from jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/70/ba/fa37123a86ae8287d6678535a944f9c3377d8165e536310ed6f6cb0f0c0e/json5-0.9.14-py2.py3-none-any.whl (19 kB) Collecting jsonschema>=4.18.0 (from jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0f/ed/0058234d8dd2b1fc6beeea8eab945191a05e9d391a63202f49fe23327586/jsonschema-4.20.0-py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 kB 203.6 MB/s eta 0:00:00 Collecting mdurl~=0.1 (from markdown-it-py~=3.0->myst-parser~=2.0.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b3/38/89ba8ad64ae25be8de66a6d463314cf1eb366222074cfda9ee839c56a4b4/mdurl-0.1.2-py3-none-any.whl (10.0 kB) Collecting beautifulsoup4 (from nbconvert!=5.4->nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/57/f4/a69c20ee4f660081a7dedb1ac57f29be9378e04edfcb90c526b923d4bebc/beautifulsoup4-4.12.2-py3-none-any.whl (142 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 143.0/143.0 kB 20.9 MB/s eta 0:00:00 Collecting bleach!=5.0.0 (from nbconvert!=5.4->nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ea/63/da7237f805089ecc28a3f36bca6a21c31fcbc2eb380f3b8f1be3312abd14/bleach-6.1.0-py3-none-any.whl (162 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 162.8/162.8 kB 7.9 MB/s eta 0:00:00 Collecting defusedxml (from nbconvert!=5.4->nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/07/6c/aa3f2f849e01cb6a001cd8554a88d4c77c5c1a31c95bdf1cf9301e6d9ef4/defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) Collecting jupyterlab-pygments (from nbconvert!=5.4->nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b1/dd/ead9d8ea85bf202d90cc513b533f9c363121c7792674f78e0d8a854b63b4/jupyterlab_pygments-0.3.0-py3-none-any.whl (15 kB) Collecting mistune<4,>=2.0.3 (from nbconvert!=5.4->nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f0/74/c95adcdf032956d9ef6c89a9b8a5152bf73915f8c633f3e3d88d06bd699c/mistune-3.0.2-py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 48.0/48.0 kB 188.4 MB/s eta 0:00:00 Collecting nbclient>=0.5.0 (from nbconvert!=5.4->nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/6b/3a/607149974149f847125c38a62b9ea2b8267eb74823bbf8d8c54ae0212a00/nbclient-0.9.0-py3-none-any.whl (24 kB) Collecting pandocfilters>=1.4.1 (from nbconvert!=5.4->nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/5e/a8/878258cffd53202a6cc1903c226cf09e58ae3df6b09f8ddfa98033286637/pandocfilters-1.5.0-py2.py3-none-any.whl (8.7 kB) Collecting tinycss2 (from nbconvert!=5.4->nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/da/99/fd23634d6962c2791fb8cb6ccae1f05dcbfc39bce36bba8b1c9a8d92eae8/tinycss2-1.2.1-py3-none-any.whl (21 kB) Collecting fastjsonschema (from nbformat->nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9c/b9/79691036d4a8f9857e74d1728b23f34f583b81350a27492edda58d5604e1/fastjsonschema-2.19.1-py3-none-any.whl (23 kB) Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from packaging>=21.0->sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (3.1.1) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->pygithub~=1.57->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/62/bd/69628ab50368b1beb900eb1de5c46f8137169b75b2458affe95f2f470501/cryptography-41.0.7-cp37-abi3-manylinux_2_28_x86_64.whl (4.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.4/4.4 MB 14.1 MB/s eta 0:00:00 Requirement already satisfied: cffi>=1.4.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from pynacl>=1.4.0->pygithub~=1.57->-r docs/requirements.txt (line 14)) (1.16.0) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from requests>=2.25.0->sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from requests>=2.25.0->sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (3.6) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from requests>=2.25.0->sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (2.1.0) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from requests>=2.25.0->sphinx~=6.2.1->-r docs/requirements.txt (line 4)) (2023.11.17) Collecting wrapt<2,>=1.10 (from deprecated->pygithub~=1.57->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b1/e7/459a8a4f40f2fa65eb73cb3f339e6d152957932516d18d0e996c7ae2d7ae/wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 80.1/80.1 kB 228.9 MB/s eta 0:00:00 Collecting comm>=0.1.1 (from ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/6e/c1/e7335bd49aa3fa3bd453e34a4580b0076804f219897ad76d4d5aa4d8f22f/comm-0.2.1-py3-none-any.whl (7.2 kB) Collecting debugpy>=1.6.5 (from ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f7/79/6053a14f60e879b8cb1a42dadbbef8822603eadde79944c61e955309b622/debugpy-1.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.4/3.4 MB 14.0 MB/s eta 0:00:00 Collecting ipython>=7.23.1 (from ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/47/6b/d9fdcdef2eb6a23f391251fde8781c38d42acd82abe84d054cb74f7863b0/ipython-8.18.1-py3-none-any.whl (808 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 808.2/808.2 kB 14.7 MB/s eta 0:00:00 Collecting matplotlib-inline>=0.1 (from ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f2/51/c34d7a1d528efaae3d8ddb18ef45a41f284eacf9e514523b191b7d0872cc/matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB) Collecting nest-asyncio (from ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ab/d3/48c01d1944e0ee49fdc005bf518a68b0582d3bd201e5401664890b62a647/nest_asyncio-1.5.8-py3-none-any.whl (5.3 kB) Collecting psutil (from ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/be/fa/f1f626620e3b47e6237dcc64cb8cc1472f139e99422e5b9fa5bbcf457f48/psutil-5.9.7-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (285 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 285.5/285.5 kB 16.4 MB/s eta 0:00:00 Collecting sniffio>=1.1 (from anyio>=3.1.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c3/a0/5dba8ed157b0136607c7f2151db695885606968d1fae123dc3391e0cfdbf/sniffio-1.3.0-py3-none-any.whl (10 kB) Collecting exceptiongroup>=1.0.2 (from anyio>=3.1.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b8/9a/5028fd52db10e600f1c4674441b968cf2ea4959085bfb5b99fb1250e5f68/exceptiongroup-1.2.0-py3-none-any.whl (16 kB) Collecting webencodings (from bleach!=5.0.0->nbconvert!=5.4->nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Requirement already satisfied: pycparser in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->pygithub~=1.57->-r docs/requirements.txt (line 14)) (2.21) Requirement already satisfied: humanfriendly>=9.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from coloredlogs~=15.0->idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (10.0) Collecting decorator (from ipython>=7.23.1->ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d5/50/83c593b07763e1161326b3b8c6686f0f4b0f24d5526546bee538c89837d6/decorator-5.1.1-py3-none-any.whl (9.1 kB) Collecting jedi>=0.16 (from ipython>=7.23.1->ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/20/9f/bc63f0f0737ad7a60800bfd472a4836661adae21f9c2535f3957b1e54ceb/jedi-0.19.1-py2.py3-none-any.whl (1.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 14.1 MB/s eta 0:00:00 Collecting prompt-toolkit<3.1.0,>=3.0.41 (from ipython>=7.23.1->ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ee/fd/ca7bf3869e7caa7a037e23078539467b433a4e01eebd93f77180ab927766/prompt_toolkit-3.0.43-py3-none-any.whl (386 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 386.1/386.1 kB 18.9 MB/s eta 0:00:00 Collecting stack-data (from ipython>=7.23.1->ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f1/7b/ce1eafaf1a76852e2ec9b22edecf1daa58175c090266e9f6c64afcd81d91/stack_data-0.6.3-py3-none-any.whl (24 kB) Collecting pexpect>4.3 (from ipython>=7.23.1->ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9e/c3/059298687310d527a58bb01f3b1965787ee3b40dce76752eda8b44e9a2c5/pexpect-4.9.0-py2.py3-none-any.whl (63 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 63.8/63.8 kB 215.2 MB/s eta 0:00:00 Requirement already satisfied: attrs>=22.2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from jsonschema>=4.18.0->jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) (23.2.0) Collecting jsonschema-specifications>=2023.03.6 (from jsonschema>=4.18.0->jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ee/07/44bd408781594c4d0a027666ef27fab1e441b109dc3b76b4f836f8fd04fe/jsonschema_specifications-2023.12.1-py3-none-any.whl (18 kB) Collecting referencing>=0.28.4 (from jsonschema>=4.18.0->jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/14/2a/0a9f649354cd2d40f6c4f16eadabd9727377e3b9bc2ccec6cb630d9a6765/referencing-0.32.1-py3-none-any.whl (26 kB) Collecting rpds-py>=0.7.1 (from jsonschema>=4.18.0->jupyterlab-server<3,>=2.19.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c2/e9/190521d63b504c12bdcffb27ea6aaac1dbb2521be983c3a2a0ab4a938b8c/rpds_py-0.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 13.5 MB/s eta 0:00:00 Requirement already satisfied: python-dateutil>=2.8.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from jupyter-client>=7.4.4->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) (2.8.2) Collecting python-json-logger>=2.0.4 (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/35/a6/145655273568ee78a581e734cf35beb9e33a370b29c5d3c8fee3744de29f/python_json_logger-2.0.7-py3-none-any.whl (8.1 kB) Collecting rfc3339-validator (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7b/44/4e421b96b67b2daff264473f7465db72fbdf36a07e05494f50300cc7b0c6/rfc3339_validator-0.1.4-py2.py3-none-any.whl (3.5 kB) Collecting rfc3986-validator>=0.1.1 (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9e/51/17023c0f8f1869d8806b979a2bffa3f861f26a3f1a66b094288323fba52f/rfc3986_validator-0.1.1-py2.py3-none-any.whl (4.2 kB) Requirement already satisfied: pytz>=2020.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from pandas>=1.1.4->idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (2023.3.post1) Requirement already satisfied: tzdata>=2022.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from pandas>=1.1.4->idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (2023.4) Requirement already satisfied: docopt in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from pipreqs<0.5,>=0.4.10->idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (0.6.2) Requirement already satisfied: yarg in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages (from pipreqs<0.5,>=0.4.10->idmtools~=1.7.9->idmtools-models~=1.7->-r docs/requirements.txt (line 3)) (0.1.9) Collecting ptyprocess (from terminado>=0.8.3->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/22/a6/858897256d0deac81a172289110f31629fc4cee19b6f01283303e18c8db3/ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) Collecting argon2-cffi-bindings (from argon2-cffi->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ec/f7/378254e6dd7ae6f31fe40c8649eea7d4832a42243acaf0f1fff9083b2bed/argon2_cffi_bindings-21.2.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (86 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 86.2/86.2 kB 193.4 MB/s eta 0:00:00 Collecting soupsieve>1.2 (from beautifulsoup4->nbconvert!=5.4->nbsphinx~=0.9.2->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/4c/f3/038b302fdfbe3be7da016777069f26ceefe11a681055ea1f7817546508e3/soupsieve-2.5-py3-none-any.whl (36 kB) Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython>=7.23.1->ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/05/63/8011bd08a4111858f79d2b09aad86638490d62fbf881c44e434a6dfca87b/parso-0.8.3-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.8/100.8 kB 213.6 MB/s eta 0:00:00 Collecting fqdn (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/cf/58/8acf1b3e91c58313ce5cb67df61001fc9dcd21be4fadb76c1a2d540e09ed/fqdn-1.5.1-py3-none-any.whl (9.1 kB) Collecting isoduration (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7b/55/e5326141505c5d5e34c5e0935d2908a74e4561eca44108fbfb9c13d2911a/isoduration-20.11.0-py3-none-any.whl (11 kB) Collecting jsonpointer>1.13 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/12/f6/0232cc0c617e195f06f810534d00b74d2f348fe71b2118009ad8ad31f878/jsonpointer-2.4-py2.py3-none-any.whl (7.8 kB) Collecting uri-template (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e7/00/3fca040d7cf8a32776d3d81a00c8ee7457e00f80c649f1e4a863c8321ae9/uri_template-1.3.0-py3-none-any.whl (11 kB) Collecting webcolors>=1.11 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d5/e1/3e9013159b4cbb71df9bd7611cbf90dc2c621c8aeeb677fc41dad72f2261/webcolors-1.13-py3-none-any.whl (14 kB) Collecting wcwidth (from prompt-toolkit<3.1.0,>=3.0.41->ipython>=7.23.1->ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fd/84/fd2ba7aafacbad3c4201d395674fc6348826569da3c0937e75505ead3528/wcwidth-0.2.13-py2.py3-none-any.whl (34 kB) Collecting executing>=1.2.0 (from stack-data->ipython>=7.23.1->ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/80/03/6ea8b1b2a5ab40a7a60dc464d3daa7aa546e0a74d74a9f8ff551ea7905db/executing-2.0.1-py2.py3-none-any.whl (24 kB) Collecting asttokens>=2.1.0 (from stack-data->ipython>=7.23.1->ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/45/86/4736ac618d82a20d87d2f92ae19441ebc7ac9e7a581d7e58bbe79233b24a/asttokens-2.4.1-py2.py3-none-any.whl (27 kB) Collecting pure-eval (from stack-data->ipython>=7.23.1->ipykernel->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2b/27/77f9d5684e6bce929f5cfe18d6cfbe5133013c06cb2fbf5933670e60761d/pure_eval-0.2.2-py3-none-any.whl (11 kB) Collecting arrow>=0.15.0 (from isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f8/ed/e97229a566617f2ae958a6b13e7cc0f585470eac730a73e9e82c32a3cdd2/arrow-1.3.0-py3-none-any.whl (66 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 66.4/66.4 kB 186.7 MB/s eta 0:00:00 Collecting types-python-dateutil>=2.8.10 (from arrow>=0.15.0->isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->jupyterlab~=4.0.2->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/28/50/8ed67814241e2684369f4b8b881c7d31a0816e76c8690ea8518017a35b7e/types_python_dateutil-2.8.19.20240106-py3-none-any.whl (9.7 kB) Installing collected packages: webencodings, wcwidth, pure-eval, ptyprocess, json5, fastjsonschema, wrapt, websocket-client, webcolors, uri-template, typing-extensions, types-python-dateutil, traitlets, tomli, tinycss2, terminado, soupsieve, sniffio, send2trash, rpds-py, rfc3986-validator, rfc3339-validator, readthedocs-sphinx-search, pyzmq, python-json-logger, pyjwt, psutil, prompt-toolkit, prometheus-client, pockets, pluggy, platformdirs, pexpect, parso, pandocfilters, overrides, nest-asyncio, mistune, mdurl, jupyterlab-pygments, jsonpointer, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, click, bleach, asttokens, stack-data, sphinxcontrib-napoleon, referencing, pynacl, plantweb, matplotlib-inline, markdown-it-py, jupyter-server-terminals, jupyter-core, jedi, deprecated, cryptography, comm, beautifulsoup4, async-lru, arrow, argon2-cffi-bindings, anyio, mdit-py-plugins, jupyter-client, jsonschema-specifications, isoduration, ipython, argon2-cffi, pygithub, jsonschema, ipykernel, nbformat, nbclient, jupyter-events, nbconvert, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, sphinx, sphinxcontrib-jquery, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton, nbsphinx, myst-parser Attempting uninstall: pluggy Found existing installation: pluggy 0.13.1 Uninstalling pluggy-0.13.1: Successfully uninstalled pluggy-0.13.1 Attempting uninstall: docutils Found existing installation: docutils 0.20.1 Uninstalling docutils-0.20.1: Successfully uninstalled docutils-0.20.1 Attempting uninstall: sphinx Found existing installation: Sphinx 7.2.6 Uninstalling Sphinx-7.2.6: Successfully uninstalled Sphinx-7.2.6 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. pytest 6.1.2 requires pluggy<1.0,>=0.12, but you have pluggy 1.2.0 which is incompatible. Successfully installed anyio-4.2.0 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 beautifulsoup4-4.12.2 bleach-6.1.0 click-8.0.4 comm-0.2.1 cryptography-41.0.7 debugpy-1.8.0 decorator-5.1.1 defusedxml-0.7.1 deprecated-1.2.14 docutils-0.18.1 exceptiongroup-1.2.0 executing-2.0.1 fastjsonschema-2.19.1 fqdn-1.5.1 ipykernel-6.28.0 ipython-8.18.1 isoduration-20.11.0 jedi-0.19.1 json5-0.9.14 jsonpointer-2.4 jsonschema-4.20.0 jsonschema-specifications-2023.12.1 jupyter-client-8.6.0 jupyter-core-5.7.1 jupyter-events-0.9.0 jupyter-lsp-2.2.1 jupyter-server-2.12.4 jupyter-server-terminals-0.5.1 jupyterlab-4.0.10 jupyterlab-pygments-0.3.0 jupyterlab-server-2.25.2 markdown-it-py-3.0.0 matplotlib-inline-0.1.6 mdit-py-plugins-0.4.0 mdurl-0.1.2 mistune-3.0.2 myst-parser-2.0.0 nbclient-0.9.0 nbconvert-7.14.1 nbformat-5.9.2 nbsphinx-0.9.3 nest-asyncio-1.5.8 notebook-shim-0.2.3 overrides-7.4.0 pandocfilters-1.5.0 parso-0.8.3 pexpect-4.9.0 plantweb-1.2.1 platformdirs-4.1.0 pluggy-1.2.0 pockets-0.9.1 prometheus-client-0.19.0 prompt-toolkit-3.0.43 psutil-5.9.7 ptyprocess-0.7.0 pure-eval-0.2.2 pygithub-1.59.1 pyjwt-2.8.0 pynacl-1.5.0 python-json-logger-2.0.7 pyzmq-25.1.2 readthedocs-sphinx-search-0.3.1 referencing-0.32.1 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.17.1 send2trash-1.8.2 sniffio-1.3.0 soupsieve-2.5 sphinx-6.2.1 sphinx-copybutton-0.5.2 sphinx-rtd-theme-1.2.2 sphinxcontrib-jquery-4.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 stack-data-0.6.3 terminado-0.18.0 tinycss2-1.2.1 tomli-2.0.1 traitlets-5.14.1 types-python-dateutil-2.8.19.20240106 typing-extensions-4.9.0 uri-template-1.3.0 wcwidth-0.2.13 webcolors-1.13 webencodings-0.5.1 websocket-client-1.7.0 wrapt-1.16.0 [rtd-command-info] start-time: 2024-01-12T23:18:20.382359Z, end-time: 2024-01-12T23:18:21.663065Z, duration: 1, exit-code: 0 python ./setup.py install --force /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/checkouts/v1.0.12/./setup.py:5: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources running install /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: EasyInstallDeprecationWarning: easy_install command is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` and ``easy_install``. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://github.com/pypa/setuptools/issues/917 for details. ******************************************************************************** !! self.initialize_options() running bdist_egg running egg_info creating idmtools_calibra.egg-info writing idmtools_calibra.egg-info/PKG-INFO writing dependency_links to idmtools_calibra.egg-info/dependency_links.txt writing entry points to idmtools_calibra.egg-info/entry_points.txt writing requirements to idmtools_calibra.egg-info/requires.txt writing top-level names to idmtools_calibra.egg-info/top_level.txt writing manifest file 'idmtools_calibra.egg-info/SOURCES.txt' reading manifest file 'idmtools_calibra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'idmtools_calibra.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/examples copying examples/__init__.py -> build/lib/examples creating build/lib/tests copying tests/__init__.py -> build/lib/tests creating build/lib/idmtools_calibra copying idmtools_calibra/resample_manager.py -> build/lib/idmtools_calibra copying idmtools_calibra/calib_manager.py -> build/lib/idmtools_calibra copying idmtools_calibra/calib_site.py -> build/lib/idmtools_calibra copying idmtools_calibra/iteration_state.py -> build/lib/idmtools_calibra copying idmtools_calibra/calib_base_app.py -> build/lib/idmtools_calibra copying idmtools_calibra/__init__.py -> build/lib/idmtools_calibra copying idmtools_calibra/singularity_json_python_task.py -> build/lib/idmtools_calibra copying idmtools_calibra/process_state.py -> build/lib/idmtools_calibra copying idmtools_calibra/rmse_site.py -> build/lib/idmtools_calibra creating build/lib/tests/integration copying tests/integration/test_solar_panel_model.py -> build/lib/tests/integration copying tests/integration/test_emod_sir.py -> build/lib/tests/integration copying tests/integration/helper.py -> build/lib/tests/integration copying tests/integration/test_hooks.py -> build/lib/tests/integration copying tests/integration/__init__.py -> build/lib/tests/integration copying tests/integration/test_emod_hint.py -> build/lib/tests/integration creating build/lib/tests/integration/emod_sir copying tests/integration/emod_sir/manifest_sir.py -> build/lib/tests/integration/emod_sir copying tests/integration/emod_sir/task.py -> build/lib/tests/integration/emod_sir copying tests/integration/emod_sir/settings.py -> build/lib/tests/integration/emod_sir copying tests/integration/emod_sir/__init__.py -> build/lib/tests/integration/emod_sir creating build/lib/tests/integration/solar copying tests/integration/solar/settings.py -> build/lib/tests/integration/solar copying tests/integration/solar/__init__.py -> build/lib/tests/integration/solar creating build/lib/tests/integration/emod_hint copying tests/integration/emod_hint/task.py -> build/lib/tests/integration/emod_hint copying tests/integration/emod_hint/model.py -> build/lib/tests/integration/emod_hint copying tests/integration/emod_hint/settings.py -> build/lib/tests/integration/emod_hint copying tests/integration/emod_hint/__init__.py -> build/lib/tests/integration/emod_hint copying tests/integration/emod_hint/manifest.py -> build/lib/tests/integration/emod_hint creating build/lib/idmtools_calibra/algorithms copying idmtools_calibra/algorithms/imis.py -> build/lib/idmtools_calibra/algorithms copying idmtools_calibra/algorithms/optim_tools_pspo.py -> build/lib/idmtools_calibra/algorithms copying idmtools_calibra/algorithms/next_point_algorithm.py -> build/lib/idmtools_calibra/algorithms copying idmtools_calibra/algorithms/separatrix_bhm.py -> build/lib/idmtools_calibra/algorithms copying idmtools_calibra/algorithms/optim_tool.py -> build/lib/idmtools_calibra/algorithms copying idmtools_calibra/algorithms/fisher_inf_matrix.py -> build/lib/idmtools_calibra/algorithms copying idmtools_calibra/algorithms/gpc.py -> build/lib/idmtools_calibra/algorithms copying idmtools_calibra/algorithms/__init__.py -> build/lib/idmtools_calibra/algorithms copying idmtools_calibra/algorithms/optim_tools_spsa.py -> build/lib/idmtools_calibra/algorithms copying idmtools_calibra/algorithms/generic_iterative_next_point.py -> build/lib/idmtools_calibra/algorithms creating build/lib/idmtools_calibra/utilities copying idmtools_calibra/utilities/encoding.py -> build/lib/idmtools_calibra/utilities copying idmtools_calibra/utilities/resume_manager.py -> build/lib/idmtools_calibra/utilities copying idmtools_calibra/utilities/helper.py -> build/lib/idmtools_calibra/utilities copying idmtools_calibra/utilities/parameter_set.py -> build/lib/idmtools_calibra/utilities copying idmtools_calibra/utilities/ll_calculators.py -> build/lib/idmtools_calibra/utilities copying idmtools_calibra/utilities/__init__.py -> build/lib/idmtools_calibra/utilities copying idmtools_calibra/utilities/distro.py -> build/lib/idmtools_calibra/utilities copying idmtools_calibra/utilities/display.py -> build/lib/idmtools_calibra/utilities copying idmtools_calibra/utilities/prior.py -> build/lib/idmtools_calibra/utilities copying idmtools_calibra/utilities/mod_fn.py -> build/lib/idmtools_calibra/utilities copying idmtools_calibra/utilities/ll_all_generator.py -> build/lib/idmtools_calibra/utilities creating build/lib/idmtools_calibra/analyzers copying idmtools_calibra/analyzers/rmse_analyzer.py -> build/lib/idmtools_calibra/analyzers copying idmtools_calibra/analyzers/base_calibration_analyzer.py -> build/lib/idmtools_calibra/analyzers copying idmtools_calibra/analyzers/__init__.py -> build/lib/idmtools_calibra/analyzers creating build/lib/idmtools_calibra/plotters copying idmtools_calibra/plotters/optim_tool_pbnb_plotter.py -> build/lib/idmtools_calibra/plotters copying idmtools_calibra/plotters/site_data_plotter.py -> build/lib/idmtools_calibra/plotters copying idmtools_calibra/plotters/base_plotter.py -> build/lib/idmtools_calibra/plotters copying idmtools_calibra/plotters/optim_tool_plotter.py -> build/lib/idmtools_calibra/plotters copying idmtools_calibra/plotters/optim_tool_spsa_plotter.py -> build/lib/idmtools_calibra/plotters copying idmtools_calibra/plotters/__init__.py -> build/lib/idmtools_calibra/plotters copying idmtools_calibra/plotters/separatrix_bhm_plotter.py -> build/lib/idmtools_calibra/plotters copying idmtools_calibra/plotters/likelihood_plotter.py -> build/lib/idmtools_calibra/plotters creating build/lib/idmtools_calibra/output copying idmtools_calibra/output/spatial_output.py -> build/lib/idmtools_calibra/output copying idmtools_calibra/output/__init__.py -> build/lib/idmtools_calibra/output creating build/lib/idmtools_calibra/cli copying idmtools_calibra/cli/commands.py -> build/lib/idmtools_calibra/cli copying idmtools_calibra/cli/utils.py -> build/lib/idmtools_calibra/cli copying idmtools_calibra/cli/__init__.py -> build/lib/idmtools_calibra/cli creating build/lib/idmtools_calibra/resamplers copying idmtools_calibra/resamplers/__init__.py -> build/lib/idmtools_calibra/resamplers copying idmtools_calibra/resamplers/calibration_points.py -> build/lib/idmtools_calibra/resamplers copying idmtools_calibra/resamplers/cramer_rao_resampler.py -> build/lib/idmtools_calibra/resamplers copying idmtools_calibra/resamplers/calibration_point.py -> build/lib/idmtools_calibra/resamplers copying idmtools_calibra/resamplers/random_perturbation_resampler.py -> build/lib/idmtools_calibra/resamplers copying idmtools_calibra/resamplers/base_resampler.py -> build/lib/idmtools_calibra/resamplers creating build/lib/idmtools_calibra/algorithms/pbnb copying idmtools_calibra/algorithms/pbnb/fun_pbnb_support_functions.py -> build/lib/idmtools_calibra/algorithms/pbnb copying idmtools_calibra/algorithms/pbnb/m_intial_paramters_setting.py -> build/lib/idmtools_calibra/algorithms/pbnb copying idmtools_calibra/algorithms/pbnb/c_sub_region.py -> build/lib/idmtools_calibra/algorithms/pbnb copying idmtools_calibra/algorithms/pbnb/__init__.py -> build/lib/idmtools_calibra/algorithms/pbnb copying idmtools_calibra/algorithms/pbnb/optim_tool_pbnb.py -> build/lib/idmtools_calibra/algorithms/pbnb creating build/lib/idmtools_calibra/utilities/parsers copying idmtools_calibra/utilities/parsers/pd2csv.py -> build/lib/idmtools_calibra/utilities/parsers copying idmtools_calibra/utilities/parsers/bin2np.py -> build/lib/idmtools_calibra/utilities/parsers copying idmtools_calibra/utilities/parsers/np2json.py -> build/lib/idmtools_calibra/utilities/parsers copying idmtools_calibra/utilities/parsers/__init__.py -> build/lib/idmtools_calibra/utilities/parsers copying idmtools_calibra/utilities/parsers/dict2pd.py -> build/lib/idmtools_calibra/utilities/parsers copying idmtools_calibra/utilities/parsers/np2pd.py -> build/lib/idmtools_calibra/utilities/parsers copying idmtools_calibra/utilities/parsers/malaria_summary.py -> build/lib/idmtools_calibra/utilities/parsers copying idmtools_calibra/utilities/parsers/JSON.py -> build/lib/idmtools_calibra/utilities/parsers creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/tests copying build/lib/tests/__init__.py -> build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/integration creating build/bdist.linux-x86_64/egg/tests/integration/emod_sir copying build/lib/tests/integration/emod_sir/manifest_sir.py -> build/bdist.linux-x86_64/egg/tests/integration/emod_sir copying build/lib/tests/integration/emod_sir/task.py -> build/bdist.linux-x86_64/egg/tests/integration/emod_sir copying build/lib/tests/integration/emod_sir/settings.py -> build/bdist.linux-x86_64/egg/tests/integration/emod_sir copying build/lib/tests/integration/emod_sir/__init__.py -> build/bdist.linux-x86_64/egg/tests/integration/emod_sir copying build/lib/tests/integration/test_solar_panel_model.py -> build/bdist.linux-x86_64/egg/tests/integration copying build/lib/tests/integration/test_emod_sir.py -> build/bdist.linux-x86_64/egg/tests/integration creating build/bdist.linux-x86_64/egg/tests/integration/solar copying build/lib/tests/integration/solar/settings.py -> build/bdist.linux-x86_64/egg/tests/integration/solar copying build/lib/tests/integration/solar/__init__.py -> build/bdist.linux-x86_64/egg/tests/integration/solar creating build/bdist.linux-x86_64/egg/tests/integration/emod_hint copying build/lib/tests/integration/emod_hint/task.py -> build/bdist.linux-x86_64/egg/tests/integration/emod_hint copying build/lib/tests/integration/emod_hint/model.py -> build/bdist.linux-x86_64/egg/tests/integration/emod_hint copying build/lib/tests/integration/emod_hint/settings.py -> build/bdist.linux-x86_64/egg/tests/integration/emod_hint copying build/lib/tests/integration/emod_hint/__init__.py -> build/bdist.linux-x86_64/egg/tests/integration/emod_hint copying build/lib/tests/integration/emod_hint/manifest.py -> build/bdist.linux-x86_64/egg/tests/integration/emod_hint copying build/lib/tests/integration/helper.py -> build/bdist.linux-x86_64/egg/tests/integration copying build/lib/tests/integration/test_hooks.py -> build/bdist.linux-x86_64/egg/tests/integration copying build/lib/tests/integration/__init__.py -> build/bdist.linux-x86_64/egg/tests/integration copying build/lib/tests/integration/test_emod_hint.py -> build/bdist.linux-x86_64/egg/tests/integration creating build/bdist.linux-x86_64/egg/idmtools_calibra creating build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms copying build/lib/idmtools_calibra/algorithms/imis.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms copying build/lib/idmtools_calibra/algorithms/optim_tools_pspo.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms copying build/lib/idmtools_calibra/algorithms/next_point_algorithm.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms creating build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/pbnb copying build/lib/idmtools_calibra/algorithms/pbnb/fun_pbnb_support_functions.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/pbnb copying build/lib/idmtools_calibra/algorithms/pbnb/m_intial_paramters_setting.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/pbnb copying build/lib/idmtools_calibra/algorithms/pbnb/c_sub_region.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/pbnb copying build/lib/idmtools_calibra/algorithms/pbnb/__init__.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/pbnb copying build/lib/idmtools_calibra/algorithms/pbnb/optim_tool_pbnb.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/pbnb copying build/lib/idmtools_calibra/algorithms/separatrix_bhm.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms copying build/lib/idmtools_calibra/algorithms/optim_tool.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms copying build/lib/idmtools_calibra/algorithms/fisher_inf_matrix.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms copying build/lib/idmtools_calibra/algorithms/gpc.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms copying build/lib/idmtools_calibra/algorithms/__init__.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms copying build/lib/idmtools_calibra/algorithms/optim_tools_spsa.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms copying build/lib/idmtools_calibra/algorithms/generic_iterative_next_point.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms creating build/bdist.linux-x86_64/egg/idmtools_calibra/utilities copying build/lib/idmtools_calibra/utilities/encoding.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities creating build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers copying build/lib/idmtools_calibra/utilities/parsers/pd2csv.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers copying build/lib/idmtools_calibra/utilities/parsers/bin2np.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers copying build/lib/idmtools_calibra/utilities/parsers/np2json.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers copying build/lib/idmtools_calibra/utilities/parsers/__init__.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers copying build/lib/idmtools_calibra/utilities/parsers/dict2pd.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers copying build/lib/idmtools_calibra/utilities/parsers/np2pd.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers copying build/lib/idmtools_calibra/utilities/parsers/malaria_summary.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers copying build/lib/idmtools_calibra/utilities/parsers/JSON.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers copying build/lib/idmtools_calibra/utilities/resume_manager.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities copying build/lib/idmtools_calibra/utilities/helper.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities copying build/lib/idmtools_calibra/utilities/parameter_set.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities copying build/lib/idmtools_calibra/utilities/ll_calculators.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities copying build/lib/idmtools_calibra/utilities/__init__.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities copying build/lib/idmtools_calibra/utilities/distro.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities copying build/lib/idmtools_calibra/utilities/display.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities copying build/lib/idmtools_calibra/utilities/prior.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities copying build/lib/idmtools_calibra/utilities/mod_fn.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities copying build/lib/idmtools_calibra/utilities/ll_all_generator.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/utilities copying build/lib/idmtools_calibra/resample_manager.py -> build/bdist.linux-x86_64/egg/idmtools_calibra copying build/lib/idmtools_calibra/calib_manager.py -> build/bdist.linux-x86_64/egg/idmtools_calibra copying build/lib/idmtools_calibra/calib_site.py -> build/bdist.linux-x86_64/egg/idmtools_calibra creating build/bdist.linux-x86_64/egg/idmtools_calibra/analyzers copying build/lib/idmtools_calibra/analyzers/rmse_analyzer.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/analyzers copying build/lib/idmtools_calibra/analyzers/base_calibration_analyzer.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/analyzers copying build/lib/idmtools_calibra/analyzers/__init__.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/analyzers copying build/lib/idmtools_calibra/iteration_state.py -> build/bdist.linux-x86_64/egg/idmtools_calibra creating build/bdist.linux-x86_64/egg/idmtools_calibra/plotters copying build/lib/idmtools_calibra/plotters/optim_tool_pbnb_plotter.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/plotters copying build/lib/idmtools_calibra/plotters/site_data_plotter.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/plotters copying build/lib/idmtools_calibra/plotters/base_plotter.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/plotters copying build/lib/idmtools_calibra/plotters/optim_tool_plotter.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/plotters copying build/lib/idmtools_calibra/plotters/optim_tool_spsa_plotter.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/plotters copying build/lib/idmtools_calibra/plotters/__init__.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/plotters copying build/lib/idmtools_calibra/plotters/separatrix_bhm_plotter.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/plotters copying build/lib/idmtools_calibra/plotters/likelihood_plotter.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/plotters creating build/bdist.linux-x86_64/egg/idmtools_calibra/output copying build/lib/idmtools_calibra/output/spatial_output.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/output copying build/lib/idmtools_calibra/output/__init__.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/output copying build/lib/idmtools_calibra/calib_base_app.py -> build/bdist.linux-x86_64/egg/idmtools_calibra copying build/lib/idmtools_calibra/__init__.py -> build/bdist.linux-x86_64/egg/idmtools_calibra creating build/bdist.linux-x86_64/egg/idmtools_calibra/cli copying build/lib/idmtools_calibra/cli/commands.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/cli copying build/lib/idmtools_calibra/cli/utils.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/cli copying build/lib/idmtools_calibra/cli/__init__.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/cli copying build/lib/idmtools_calibra/singularity_json_python_task.py -> build/bdist.linux-x86_64/egg/idmtools_calibra copying build/lib/idmtools_calibra/process_state.py -> build/bdist.linux-x86_64/egg/idmtools_calibra creating build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers copying build/lib/idmtools_calibra/resamplers/__init__.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers copying build/lib/idmtools_calibra/resamplers/calibration_points.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers copying build/lib/idmtools_calibra/resamplers/cramer_rao_resampler.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers copying build/lib/idmtools_calibra/resamplers/calibration_point.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers copying build/lib/idmtools_calibra/resamplers/random_perturbation_resampler.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers copying build/lib/idmtools_calibra/resamplers/base_resampler.py -> build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers copying build/lib/idmtools_calibra/rmse_site.py -> build/bdist.linux-x86_64/egg/idmtools_calibra byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/emod_sir/manifest_sir.py to manifest_sir.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/emod_sir/task.py to task.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/emod_sir/settings.py to settings.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/emod_sir/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/test_solar_panel_model.py to test_solar_panel_model.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/test_emod_sir.py to test_emod_sir.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/solar/settings.py to settings.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/solar/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/emod_hint/task.py to task.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/emod_hint/model.py to model.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/emod_hint/settings.py to settings.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/emod_hint/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/emod_hint/manifest.py to manifest.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/helper.py to helper.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/test_hooks.py to test_hooks.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/integration/test_emod_hint.py to test_emod_hint.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/imis.py to imis.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/optim_tools_pspo.py to optim_tools_pspo.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/next_point_algorithm.py to next_point_algorithm.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/pbnb/fun_pbnb_support_functions.py to fun_pbnb_support_functions.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/pbnb/m_intial_paramters_setting.py to m_intial_paramters_setting.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/pbnb/c_sub_region.py to c_sub_region.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/pbnb/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/pbnb/optim_tool_pbnb.py to optim_tool_pbnb.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/separatrix_bhm.py to separatrix_bhm.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/optim_tool.py to optim_tool.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/fisher_inf_matrix.py to fisher_inf_matrix.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/gpc.py to gpc.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/optim_tools_spsa.py to optim_tools_spsa.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/algorithms/generic_iterative_next_point.py to generic_iterative_next_point.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/encoding.py to encoding.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers/pd2csv.py to pd2csv.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers/bin2np.py to bin2np.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers/np2json.py to np2json.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers/dict2pd.py to dict2pd.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers/np2pd.py to np2pd.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers/malaria_summary.py to malaria_summary.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parsers/JSON.py to JSON.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/resume_manager.py to resume_manager.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/helper.py to helper.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/parameter_set.py to parameter_set.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/ll_calculators.py to ll_calculators.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/distro.py to distro.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/display.py to display.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/prior.py to prior.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/mod_fn.py to mod_fn.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/utilities/ll_all_generator.py to ll_all_generator.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/resample_manager.py to resample_manager.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/calib_manager.py to calib_manager.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/calib_site.py to calib_site.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/analyzers/rmse_analyzer.py to rmse_analyzer.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/analyzers/base_calibration_analyzer.py to base_calibration_analyzer.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/analyzers/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/iteration_state.py to iteration_state.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/plotters/optim_tool_pbnb_plotter.py to optim_tool_pbnb_plotter.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/plotters/site_data_plotter.py to site_data_plotter.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/plotters/base_plotter.py to base_plotter.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/plotters/optim_tool_plotter.py to optim_tool_plotter.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/plotters/optim_tool_spsa_plotter.py to optim_tool_spsa_plotter.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/plotters/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/plotters/separatrix_bhm_plotter.py to separatrix_bhm_plotter.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/plotters/likelihood_plotter.py to likelihood_plotter.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/output/spatial_output.py to spatial_output.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/output/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/calib_base_app.py to calib_base_app.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/cli/commands.py to commands.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/cli/utils.py to utils.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/cli/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/singularity_json_python_task.py to singularity_json_python_task.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/process_state.py to process_state.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers/calibration_points.py to calibration_points.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers/cramer_rao_resampler.py to cramer_rao_resampler.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers/calibration_point.py to calibration_point.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers/random_perturbation_resampler.py to random_perturbation_resampler.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/resamplers/base_resampler.py to base_resampler.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/idmtools_calibra/rmse_site.py to rmse_site.cpython-39.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying idmtools_calibra.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying idmtools_calibra.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying idmtools_calibra.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying idmtools_calibra.egg-info/entry_points.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying idmtools_calibra.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying idmtools_calibra.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... idmtools_calibra.algorithms.__pycache__.gpc.cpython-39: module references __file__ tests.integration.__pycache__.test_emod_hint.cpython-39: module references __file__ tests.integration.__pycache__.test_emod_sir.cpython-39: module references __file__ tests.integration.__pycache__.test_hooks.cpython-39: module references __file__ tests.integration.__pycache__.test_solar_panel_model.cpython-39: module references __file__ tests.integration.emod_hint.__pycache__.manifest.cpython-39: module references __file__ tests.integration.emod_hint.__pycache__.task.cpython-39: module references __file__ tests.integration.emod_sir.__pycache__.manifest_sir.cpython-39: module references __file__ tests.integration.emod_sir.__pycache__.task.cpython-39: module references __file__ tests.integration.solar.__pycache__.settings.cpython-39: module references __file__ creating dist creating 'dist/idmtools_calibra-1.0.12-py3.9.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing idmtools_calibra-1.0.12-py3.9.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages/idmtools_calibra-1.0.12-py3.9.egg Extracting idmtools_calibra-1.0.12-py3.9.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Adding idmtools-calibra 1.0.12 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages/idmtools_calibra-1.0.12-py3.9.egg Processing dependencies for idmtools-calibra==1.0.12 Searching for statsmodels==0.14.1 Best match: statsmodels 0.14.1 Adding statsmodels 0.14.1 to easy-install.pth file detected new path './idmtools_calibra-1.0.12-py3.9.egg' Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for numpy==1.26.3 Best match: numpy 1.26.3 Adding numpy 1.26.3 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for scikit-learn==1.3.2 Best match: scikit-learn 1.3.2 Adding scikit-learn 1.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for seaborn==0.13.1 Best match: seaborn 0.13.1 Adding seaborn 0.13.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for scipy==1.11.4 Best match: scipy 1.11.4 Adding scipy 1.11.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for idmtools-models==1.7.9 Best match: idmtools-models 1.7.9 Adding idmtools-models 1.7.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for idmtools-platform-comps==1.7.9 Best match: idmtools-platform-comps 1.7.9 Adding idmtools-platform-comps 1.7.9 to easy-install.pth file Installing comps-cli script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for idmtools==1.7.9 Best match: idmtools 1.7.9 Adding idmtools 1.7.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for geopy==2.4.1 Best match: geopy 2.4.1 Adding geopy 2.4.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for fasteners==0.19 Best match: fasteners 0.19 Adding fasteners 0.19 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for packaging==21.3 Best match: packaging 21.3 Adding packaging 21.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for patsy==0.5.6 Best match: patsy 0.5.6 Adding patsy 0.5.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for pandas==2.1.4 Best match: pandas 2.1.4 Adding pandas 2.1.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for threadpoolctl==3.2.0 Best match: threadpoolctl 3.2.0 Adding threadpoolctl 3.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for joblib==1.3.2 Best match: joblib 1.3.2 Adding joblib 1.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for matplotlib==3.8.2 Best match: matplotlib 3.8.2 Adding matplotlib 3.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for Jinja2==3.1.3 Best match: Jinja2 3.1.3 Adding Jinja2 3.1.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for natsort==8.4.0 Best match: natsort 8.4.0 Adding natsort 8.4.0 to easy-install.pth file Installing natsort script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for pyCOMPS==2.10.0 Best match: pyCOMPS 2.10.0 Adding pyCOMPS 2.10.0 to easy-install.pth file Installing comps-util script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for tqdm==4.66.1 Best match: tqdm 4.66.1 Adding tqdm 4.66.1 to easy-install.pth file Installing tqdm script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for pygit2==1.10.1 Best match: pygit2 1.10.1 Adding pygit2 1.10.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for tabulate==0.9.0 Best match: tabulate 0.9.0 Adding tabulate 0.9.0 to easy-install.pth file Installing tabulate script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for PyYAML==6.0.1 Best match: PyYAML 6.0.1 Adding PyYAML 6.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for pluggy==1.2.0 Best match: pluggy 1.2.0 Adding pluggy 1.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for pipreqs==0.4.13 Best match: pipreqs 0.4.13 Adding pipreqs 0.4.13 to easy-install.pth file Installing pipreqs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for more-itertools==9.1.0 Best match: more-itertools 9.1.0 Adding more-itertools 9.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for filelock==3.13.1 Best match: filelock 3.13.1 Adding filelock 3.13.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for diskcache==5.4.0 Best match: diskcache 5.4.0 Adding diskcache 5.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for coloredlogs==15.0.1 Best match: coloredlogs 15.0.1 Adding coloredlogs 15.0.1 to easy-install.pth file Installing coloredlogs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for backoff==2.2.1 Best match: backoff 2.2.1 Adding backoff 2.2.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for geographiclib==2.0 Best match: geographiclib 2.0 Adding geographiclib 2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for pyparsing==3.1.1 Best match: pyparsing 3.1.1 Adding pyparsing 3.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for tzdata==2023.4 Best match: tzdata 2023.4 Adding tzdata 2023.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for pytz==2023.3.post1 Best match: pytz 2023.3.post1 Adding pytz 2023.3.post1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 Adding python-dateutil 2.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for importlib-resources==6.1.1 Best match: importlib-resources 6.1.1 Adding importlib-resources 6.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for pillow==10.2.0 Best match: pillow 10.2.0 Adding pillow 10.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for kiwisolver==1.4.5 Best match: kiwisolver 1.4.5 Adding kiwisolver 1.4.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for fonttools==4.47.2 Best match: fonttools 4.47.2 Adding fonttools 4.47.2 to easy-install.pth file Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for cycler==0.12.1 Best match: cycler 0.12.1 Adding cycler 0.12.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for contourpy==1.2.0 Best match: contourpy 1.2.0 Adding contourpy 1.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for MarkupSafe==2.1.3 Best match: MarkupSafe 2.1.3 Adding MarkupSafe 2.1.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for xdg==6.0.0 Best match: xdg 6.0.0 Adding xdg 6.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for future==0.18.3 Best match: future 0.18.3 Adding future 0.18.3 to easy-install.pth file Installing futurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Installing pasteurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for requests==2.31.0 Best match: requests 2.31.0 Adding requests 2.31.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for cffi==1.16.0 Best match: cffi 1.16.0 Adding cffi 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for yarg==0.1.9 Best match: yarg 0.1.9 Adding yarg 0.1.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for docopt==0.6.2 Best match: docopt 0.6.2 Adding docopt 0.6.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for humanfriendly==10.0 Best match: humanfriendly 10.0 Adding humanfriendly 10.0 to easy-install.pth file Installing humanfriendly script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for zipp==3.17.0 Best match: zipp 3.17.0 Adding zipp 3.17.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for certifi==2023.11.17 Best match: certifi 2023.11.17 Adding certifi 2023.11.17 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for urllib3==2.1.0 Best match: urllib3 2.1.0 Adding urllib3 2.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for idna==3.6 Best match: idna 3.6 Adding idna 3.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for charset-normalizer==3.3.2 Best match: charset-normalizer 3.3.2 Adding charset-normalizer 3.3.2 to easy-install.pth file Installing normalizer script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Searching for pycparser==2.21 Best match: pycparser 2.21 Adding pycparser 2.21 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-idmtools-calibra/envs/v1.0.12/lib/python3.9/site-packages Finished processing dependencies for idmtools-calibra==1.0.12 [rtd-command-info] start-time: 2024-01-12T23:18:22.244370Z, end-time: 2024-01-12T23:18:22.303460Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # -- General configuration ------------------------------------------------ # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx.ext.intersphinx', 'sphinx_copybutton', 'sphinx_search.extension', # search across multiple docsets in domain 'sphinx.ext.viewcode', # link to view source code 'myst_parser', # source files written in MD or RST ] myst_enable_extensions = [ "amsmath", "attrs_inline", "colon_fence", "deflist", "dollarmath", "fieldlist", "html_admonition", "html_image", "linkify", "replacements", "smartquotes", "strikethrough", "substitution", "tasklist", ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['history_matching', 'pycuda', 'COMPS', 'gpc', 'skcuda', 'calibmanager', 'idmtools.utils.json', 'idmtools_calibra.output.output_parser', 'simtools', 'dtk', 'idmtools_calibra.interventions'] #'idmtools_calibra.utilities'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # source_suffix = ['.rst', '.md'] # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'idmtools_calibra' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. import idmtools_calibra version = idmtools_calibra.__version__ # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = 'en' # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_css_files = ['theme_overrides.css'] html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'idmtools_calibra' # -- RTD Sphinx search for searching across the entire domain, default parent ------------- if os.environ.get('READTHEDOCS') == 'True': search_project_parent = "institute-for-disease-modeling-idm" search_project = os.environ["READTHEDOCS_PROJECT"] search_version = os.environ["READTHEDOCS_VERSION"] rtd_sphinx_search_default_filter = f"subprojects:{search_project}/{search_version}" rtd_sphinx_search_filters = { "Search this project": f"project:{search_project}/{search_version}", "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}", } # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'idmtools_calibra.tex', u'idmtools_calibra', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'idmtools_calibra-docs', u'idmtools_calibra', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'idmtools_calibra-docs', u'idmtools_calibra', author, 'Institute for Disease Modeling', 'How to use idmtools_calibra for calibration', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emod_api': ('https://docs.idmod.org/projects/emod-api/en/latest/', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Define this variable in case it's not defined by the user. # It defaults to `alabaster` which is the default from Sphinx. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_theme html_theme = globals().get('html_theme', 'alabaster') #Add project information to the template context. context = { 'html_theme': html_theme, 'current_version': "v1.0.12", 'version_slug': "v1.0.12", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("v1.0.12", "/en/v1.0.12/"), ("v1.0.9", "/en/v1.0.9/"), ], 'downloads': [ ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-idmtools-calibra', 'name': u'idmtools_calibra', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': '', 'analytics_code': 'G-SVDSQH04EM', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'idmtools_calibra', 'github_version': 'v1.0.12', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'v1.0.12', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'v1.0.12', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'G-SVDSQH04EM', 'global_analytics_code': 'UA-17997319-2', 'commit': 'b1356122', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): for key in context: if key not in html_context: html_context[key] = context[key] else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'tag' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-idmtools-calibra/builds/1948340/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2024-01-12T23:18:22.377797Z, end-time: 2024-01-12T23:19:13.120123Z, duration: 50, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v6.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [Makefile:56: generate-api] Error 1 (ignored) rm: cannot remove 'idmtools_calibra_index.rst': No such file or directory make: [Makefile:57: generate-api] Error 1 (ignored) making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'tasklist', 'amsmath', 'substitution', 'fieldlist', 'html_image', 'smartquotes', 'colon_fence', 'attrs_inline', 'deflist', 'dollarmath', 'html_admonition', 'linkify', 'strikethrough', 'replacements'}, disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 69 source files that are out of date updating environment: [new config] 69 added, 0 changed, 0 removed reading sources... [ 1%] idmtools_calibra reading sources... [ 2%] idmtools_calibra.algorithms reading sources... [ 4%] idmtools_calibra.algorithms.fisher_inf_matrix reading sources... [ 5%] idmtools_calibra.algorithms.generic_iterative_next_point reading sources... [ 7%] idmtools_calibra.algorithms.gpc Matplotlib is building the font cache; this may take a moment. reading sources... [ 8%] idmtools_calibra.algorithms.imis reading sources... [ 10%] idmtools_calibra.algorithms.next_point_algorithm reading sources... [ 11%] idmtools_calibra.algorithms.optim_tool reading sources... [ 13%] idmtools_calibra.algorithms.optim_tools_pspo reading sources... [ 14%] idmtools_calibra.algorithms.optim_tools_spsa reading sources... [ 15%] idmtools_calibra.algorithms.pbnb reading sources... [ 17%] idmtools_calibra.algorithms.pbnb.c_sub_region reading sources... [ 18%] idmtools_calibra.algorithms.pbnb.fun_pbnb_support_functions reading sources... [ 20%] idmtools_calibra.algorithms.pbnb.m_intial_paramters_setting reading sources... [ 21%] idmtools_calibra.algorithms.pbnb.optim_tool_pbnb reading sources... [ 23%] idmtools_calibra.algorithms.separatrix_bhm reading sources... [ 24%] idmtools_calibra.analyzers reading sources... [ 26%] idmtools_calibra.analyzers.base_calibration_analyzer reading sources... [ 27%] idmtools_calibra.analyzers.rmse_analyzer reading sources... [ 28%] idmtools_calibra.calib_base_app reading sources... [ 30%] idmtools_calibra.calib_manager reading sources... [ 31%] idmtools_calibra.calib_site reading sources... [ 33%] idmtools_calibra.cli reading sources... [ 34%] idmtools_calibra.cli.commands reading sources... [ 36%] idmtools_calibra.cli.utils reading sources... [ 37%] idmtools_calibra.iteration_state reading sources... [ 39%] idmtools_calibra.output reading sources... [ 40%] idmtools_calibra.output.spatial_output reading sources... [ 42%] idmtools_calibra.plotters reading sources... [ 43%] idmtools_calibra.plotters.base_plotter reading sources... [ 44%] idmtools_calibra.plotters.likelihood_plotter reading sources... [ 46%] idmtools_calibra.plotters.optim_tool_pbnb_plotter reading sources... [ 47%] idmtools_calibra.plotters.optim_tool_plotter reading sources... [ 49%] idmtools_calibra.plotters.optim_tool_spsa_plotter reading sources... [ 50%] idmtools_calibra.plotters.separatrix_bhm_plotter reading sources... [ 52%] idmtools_calibra.plotters.site_data_plotter reading sources... [ 53%] idmtools_calibra.process_state reading sources... [ 55%] idmtools_calibra.resample_manager reading sources... [ 56%] idmtools_calibra.resamplers reading sources... [ 57%] idmtools_calibra.resamplers.base_resampler reading sources... [ 59%] idmtools_calibra.resamplers.calibration_point reading sources... [ 60%] idmtools_calibra.resamplers.calibration_points reading sources... [ 62%] idmtools_calibra.resamplers.cramer_rao_resampler reading sources... [ 63%] idmtools_calibra.resamplers.random_perturbation_resampler reading sources... [ 65%] idmtools_calibra.rmse_site reading sources... [ 66%] idmtools_calibra.singularity_json_python_task reading sources... [ 68%] idmtools_calibra.utilities reading sources... [ 69%] idmtools_calibra.utilities.display reading sources... [ 71%] idmtools_calibra.utilities.distro reading sources... [ 72%] idmtools_calibra.utilities.encoding reading sources... [ 73%] idmtools_calibra.utilities.helper reading sources... [ 75%] idmtools_calibra.utilities.ll_all_generator reading sources... [ 76%] idmtools_calibra.utilities.ll_calculators reading sources... [ 78%] idmtools_calibra.utilities.mod_fn reading sources... [ 79%] idmtools_calibra.utilities.parameter_set reading sources... [ 81%] idmtools_calibra.utilities.parsers reading sources... [ 82%] idmtools_calibra.utilities.parsers.JSON reading sources... [ 84%] idmtools_calibra.utilities.parsers.bin2np reading sources... [ 85%] idmtools_calibra.utilities.parsers.dict2pd reading sources... [ 86%] idmtools_calibra.utilities.parsers.malaria_summary reading sources... [ 88%] idmtools_calibra.utilities.parsers.np2json reading sources... [ 89%] idmtools_calibra.utilities.parsers.np2pd reading sources... [ 91%] idmtools_calibra.utilities.parsers.pd2csv reading sources... [ 92%] idmtools_calibra.utilities.prior reading sources... [ 94%] idmtools_calibra.utilities.resume_manager reading sources... [ 95%] idmtools_calibra_index reading sources... [ 97%] index reading sources... [ 98%] installation reading sources... [100%] overview looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 1%] idmtools_calibra writing output... [ 2%] idmtools_calibra.algorithms writing output... [ 4%] idmtools_calibra.algorithms.fisher_inf_matrix writing output... [ 5%] idmtools_calibra.algorithms.generic_iterative_next_point writing output... [ 7%] idmtools_calibra.algorithms.gpc writing output... [ 8%] idmtools_calibra.algorithms.imis writing output... [ 10%] idmtools_calibra.algorithms.next_point_algorithm writing output... [ 11%] idmtools_calibra.algorithms.optim_tool writing output... [ 13%] idmtools_calibra.algorithms.optim_tools_pspo writing output... [ 14%] idmtools_calibra.algorithms.optim_tools_spsa writing output... [ 15%] idmtools_calibra.algorithms.pbnb writing output... [ 17%] idmtools_calibra.algorithms.pbnb.c_sub_region writing output... [ 18%] idmtools_calibra.algorithms.pbnb.fun_pbnb_support_functions writing output... [ 20%] idmtools_calibra.algorithms.pbnb.m_intial_paramters_setting writing output... [ 21%] idmtools_calibra.algorithms.pbnb.optim_tool_pbnb writing output... [ 23%] idmtools_calibra.algorithms.separatrix_bhm writing output... [ 24%] idmtools_calibra.analyzers writing output... [ 26%] idmtools_calibra.analyzers.base_calibration_analyzer writing output... [ 27%] idmtools_calibra.analyzers.rmse_analyzer writing output... [ 28%] idmtools_calibra.calib_base_app writing output... [ 30%] idmtools_calibra.calib_manager writing output... [ 31%] idmtools_calibra.calib_site writing output... [ 33%] idmtools_calibra.cli writing output... [ 34%] idmtools_calibra.cli.commands writing output... [ 36%] idmtools_calibra.cli.utils writing output... [ 37%] idmtools_calibra.iteration_state writing output... [ 39%] idmtools_calibra.output writing output... [ 40%] idmtools_calibra.output.spatial_output writing output... [ 42%] idmtools_calibra.plotters writing output... [ 43%] idmtools_calibra.plotters.base_plotter writing output... [ 44%] idmtools_calibra.plotters.likelihood_plotter writing output... [ 46%] idmtools_calibra.plotters.optim_tool_pbnb_plotter writing output... [ 47%] idmtools_calibra.plotters.optim_tool_plotter writing output... [ 49%] idmtools_calibra.plotters.optim_tool_spsa_plotter writing output... [ 50%] idmtools_calibra.plotters.separatrix_bhm_plotter writing output... [ 52%] idmtools_calibra.plotters.site_data_plotter writing output... [ 53%] idmtools_calibra.process_state writing output... [ 55%] idmtools_calibra.resample_manager writing output... [ 56%] idmtools_calibra.resamplers writing output... [ 57%] idmtools_calibra.resamplers.base_resampler writing output... [ 59%] idmtools_calibra.resamplers.calibration_point writing output... [ 60%] idmtools_calibra.resamplers.calibration_points writing output... [ 62%] idmtools_calibra.resamplers.cramer_rao_resampler writing output... [ 63%] idmtools_calibra.resamplers.random_perturbation_resampler writing output... [ 65%] idmtools_calibra.rmse_site writing output... [ 66%] idmtools_calibra.singularity_json_python_task writing output... [ 68%] idmtools_calibra.utilities writing output... [ 69%] idmtools_calibra.utilities.display writing output... [ 71%] idmtools_calibra.utilities.distro writing output... [ 72%] idmtools_calibra.utilities.encoding writing output... [ 73%] idmtools_calibra.utilities.helper writing output... [ 75%] idmtools_calibra.utilities.ll_all_generator writing output... [ 76%] idmtools_calibra.utilities.ll_calculators writing output... [ 78%] idmtools_calibra.utilities.mod_fn writing output... [ 79%] idmtools_calibra.utilities.parameter_set writing output... [ 81%] idmtools_calibra.utilities.parsers writing output... [ 82%] idmtools_calibra.utilities.parsers.JSON writing output... [ 84%] idmtools_calibra.utilities.parsers.bin2np writing output... [ 85%] idmtools_calibra.utilities.parsers.dict2pd writing output... [ 86%] idmtools_calibra.utilities.parsers.malaria_summary writing output... [ 88%] idmtools_calibra.utilities.parsers.np2json writing output... [ 89%] idmtools_calibra.utilities.parsers.np2pd writing output... [ 91%] idmtools_calibra.utilities.parsers.pd2csv writing output... [ 92%] idmtools_calibra.utilities.prior writing output... [ 94%] idmtools_calibra.utilities.resume_manager writing output... [ 95%] idmtools_calibra_index writing output... [ 97%] index writing output... [ 98%] installation writing output... [100%] overview generating indices... genindex py-modindex done highlighting module code... [ 1%] idmtools_calibra.algorithms.fisher_inf_matrix highlighting module code... [ 3%] idmtools_calibra.algorithms.generic_iterative_next_point highlighting module code... [ 5%] idmtools_calibra.algorithms.gpc highlighting module code... [ 7%] idmtools_calibra.algorithms.imis highlighting module code... [ 9%] idmtools_calibra.algorithms.next_point_algorithm highlighting module code... [ 11%] idmtools_calibra.algorithms.optim_tool highlighting module code... [ 13%] idmtools_calibra.algorithms.optim_tools_pspo highlighting module code... [ 15%] idmtools_calibra.algorithms.optim_tools_spsa highlighting module code... [ 16%] idmtools_calibra.algorithms.pbnb.c_sub_region highlighting module code... [ 18%] idmtools_calibra.algorithms.pbnb.fun_pbnb_support_functions highlighting module code... [ 20%] idmtools_calibra.algorithms.pbnb.optim_tool_pbnb highlighting module code... [ 22%] idmtools_calibra.algorithms.separatrix_bhm highlighting module code... [ 24%] idmtools_calibra.analyzers.base_calibration_analyzer highlighting module code... [ 26%] idmtools_calibra.analyzers.rmse_analyzer highlighting module code... [ 28%] idmtools_calibra.calib_base_app highlighting module code... [ 30%] idmtools_calibra.calib_manager highlighting module code... [ 32%] idmtools_calibra.calib_site highlighting module code... [ 33%] idmtools_calibra.cli.utils highlighting module code... [ 35%] idmtools_calibra.iteration_state highlighting module code... [ 37%] idmtools_calibra.output.spatial_output highlighting module code... [ 39%] idmtools_calibra.plotters.base_plotter highlighting module code... [ 41%] idmtools_calibra.plotters.likelihood_plotter highlighting module code... [ 43%] idmtools_calibra.plotters.optim_tool_pbnb_plotter highlighting module code... [ 45%] idmtools_calibra.plotters.optim_tool_plotter highlighting module code... [ 47%] idmtools_calibra.plotters.optim_tool_spsa_plotter highlighting module code... [ 49%] idmtools_calibra.plotters.separatrix_bhm_plotter highlighting module code... [ 50%] idmtools_calibra.plotters.site_data_plotter highlighting module code... [ 52%] idmtools_calibra.process_state highlighting module code... [ 54%] idmtools_calibra.resample_manager highlighting module code... [ 56%] idmtools_calibra.resamplers.base_resampler highlighting module code... [ 58%] idmtools_calibra.resamplers.calibration_point highlighting module code... [ 60%] idmtools_calibra.resamplers.calibration_points highlighting module code... [ 62%] idmtools_calibra.resamplers.cramer_rao_resampler highlighting module code... [ 64%] idmtools_calibra.resamplers.random_perturbation_resampler highlighting module code... [ 66%] idmtools_calibra.rmse_site highlighting module code... [ 67%] idmtools_calibra.singularity_json_python_task highlighting module code... [ 69%] idmtools_calibra.utilities.display highlighting module code... [ 71%] idmtools_calibra.utilities.distro highlighting module code... [ 73%] idmtools_calibra.utilities.encoding highlighting module code... [ 75%] idmtools_calibra.utilities.helper highlighting module code... [ 77%] idmtools_calibra.utilities.ll_all_generator highlighting module code... [ 79%] idmtools_calibra.utilities.ll_calculators highlighting module code... [ 81%] idmtools_calibra.utilities.mod_fn highlighting module code... [ 83%] idmtools_calibra.utilities.parameter_set highlighting module code... [ 84%] idmtools_calibra.utilities.parsers.JSON highlighting module code... [ 86%] idmtools_calibra.utilities.parsers.bin2np highlighting module code... [ 88%] idmtools_calibra.utilities.parsers.dict2pd highlighting module code... [ 90%] idmtools_calibra.utilities.parsers.malaria_summary highlighting module code... [ 92%] idmtools_calibra.utilities.parsers.np2json highlighting module code... [ 94%] idmtools_calibra.utilities.parsers.np2pd highlighting module code... [ 96%] idmtools_calibra.utilities.parsers.pd2csv highlighting module code... [ 98%] idmtools_calibra.utilities.prior highlighting module code... [100%] idmtools_calibra.utilities.resume_manager writing additional pages... search opensearch done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done Updating searchtools for Read the Docs search... build succeeded. The HTML pages are in ../_readthedocs/html. [rtd-command-info] start-time: 2024-01-12T23:19:13.205958Z, end-time: 2024-01-12T23:19:23.958511Z, duration: 10, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip Running Sphinx v6.2.1 rm: cannot remove 'modules.rst': No such file or directory make: [Makefile:56: generate-api] Error 1 (ignored) making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'substitution', 'fieldlist', 'attrs_inline', 'html_image', 'colon_fence', 'deflist', 'tasklist', 'linkify', 'dollarmath', 'replacements', 'smartquotes', 'html_admonition', 'strikethrough', 'amsmath'}, disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 69 added, 0 changed, 0 removed reading sources... [ 1%] idmtools_calibra reading sources... [ 2%] idmtools_calibra.algorithms reading sources... [ 4%] idmtools_calibra.algorithms.fisher_inf_matrix reading sources... [ 5%] idmtools_calibra.algorithms.generic_iterative_next_point reading sources... [ 7%] idmtools_calibra.algorithms.gpc reading sources... [ 8%] idmtools_calibra.algorithms.imis reading sources... [ 10%] idmtools_calibra.algorithms.next_point_algorithm reading sources... [ 11%] idmtools_calibra.algorithms.optim_tool reading sources... [ 13%] idmtools_calibra.algorithms.optim_tools_pspo reading sources... [ 14%] idmtools_calibra.algorithms.optim_tools_spsa reading sources... [ 15%] idmtools_calibra.algorithms.pbnb reading sources... [ 17%] idmtools_calibra.algorithms.pbnb.c_sub_region reading sources... [ 18%] idmtools_calibra.algorithms.pbnb.fun_pbnb_support_functions reading sources... [ 20%] idmtools_calibra.algorithms.pbnb.m_intial_paramters_setting reading sources... [ 21%] idmtools_calibra.algorithms.pbnb.optim_tool_pbnb reading sources... [ 23%] idmtools_calibra.algorithms.separatrix_bhm reading sources... [ 24%] idmtools_calibra.analyzers reading sources... [ 26%] idmtools_calibra.analyzers.base_calibration_analyzer reading sources... [ 27%] idmtools_calibra.analyzers.rmse_analyzer reading sources... [ 28%] idmtools_calibra.calib_base_app reading sources... [ 30%] idmtools_calibra.calib_manager reading sources... [ 31%] idmtools_calibra.calib_site reading sources... [ 33%] idmtools_calibra.cli reading sources... [ 34%] idmtools_calibra.cli.commands reading sources... [ 36%] idmtools_calibra.cli.utils reading sources... [ 37%] idmtools_calibra.iteration_state reading sources... [ 39%] idmtools_calibra.output reading sources... [ 40%] idmtools_calibra.output.spatial_output reading sources... [ 42%] idmtools_calibra.plotters reading sources... [ 43%] idmtools_calibra.plotters.base_plotter reading sources... [ 44%] idmtools_calibra.plotters.likelihood_plotter reading sources... [ 46%] idmtools_calibra.plotters.optim_tool_pbnb_plotter reading sources... [ 47%] idmtools_calibra.plotters.optim_tool_plotter reading sources... [ 49%] idmtools_calibra.plotters.optim_tool_spsa_plotter reading sources... [ 50%] idmtools_calibra.plotters.separatrix_bhm_plotter reading sources... [ 52%] idmtools_calibra.plotters.site_data_plotter reading sources... [ 53%] idmtools_calibra.process_state reading sources... [ 55%] idmtools_calibra.resample_manager reading sources... [ 56%] idmtools_calibra.resamplers reading sources... [ 57%] idmtools_calibra.resamplers.base_resampler reading sources... [ 59%] idmtools_calibra.resamplers.calibration_point reading sources... [ 60%] idmtools_calibra.resamplers.calibration_points reading sources... [ 62%] idmtools_calibra.resamplers.cramer_rao_resampler reading sources... [ 63%] idmtools_calibra.resamplers.random_perturbation_resampler reading sources... [ 65%] idmtools_calibra.rmse_site reading sources... [ 66%] idmtools_calibra.singularity_json_python_task reading sources... [ 68%] idmtools_calibra.utilities reading sources... [ 69%] idmtools_calibra.utilities.display reading sources... [ 71%] idmtools_calibra.utilities.distro reading sources... [ 72%] idmtools_calibra.utilities.encoding reading sources... [ 73%] idmtools_calibra.utilities.helper reading sources... [ 75%] idmtools_calibra.utilities.ll_all_generator reading sources... [ 76%] idmtools_calibra.utilities.ll_calculators reading sources... [ 78%] idmtools_calibra.utilities.mod_fn reading sources... [ 79%] idmtools_calibra.utilities.parameter_set reading sources... [ 81%] idmtools_calibra.utilities.parsers reading sources... [ 82%] idmtools_calibra.utilities.parsers.JSON reading sources... [ 84%] idmtools_calibra.utilities.parsers.bin2np reading sources... [ 85%] idmtools_calibra.utilities.parsers.dict2pd reading sources... [ 86%] idmtools_calibra.utilities.parsers.malaria_summary reading sources... [ 88%] idmtools_calibra.utilities.parsers.np2json reading sources... [ 89%] idmtools_calibra.utilities.parsers.np2pd reading sources... [ 91%] idmtools_calibra.utilities.parsers.pd2csv reading sources... [ 92%] idmtools_calibra.utilities.prior reading sources... [ 94%] idmtools_calibra.utilities.resume_manager reading sources... [ 95%] idmtools_calibra_index reading sources... [ 97%] index reading sources... [ 98%] installation reading sources... [100%] overview looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation overview idmtools_calibra_index idmtools_calibra idmtools_calibra.algorithms idmtools_calibra.algorithms.pbnb idmtools_calibra.algorithms.pbnb.c_sub_region idmtools_calibra.algorithms.pbnb.fun_pbnb_support_functions idmtools_calibra.algorithms.pbnb.m_intial_paramters_setting idmtools_calibra.algorithms.pbnb.optim_tool_pbnb idmtools_calibra.algorithms.fisher_inf_matrix idmtools_calibra.algorithms.generic_iterative_next_point idmtools_calibra.algorithms.gpc idmtools_calibra.algorithms.imis idmtools_calibra.algorithms.next_point_algorithm idmtools_calibra.algorithms.optim_tool idmtools_calibra.algorithms.optim_tools_pspo idmtools_calibra.algorithms.optim_tools_spsa idmtools_calibra.algorithms.separatrix_bhm idmtools_calibra.analyzers idmtools_calibra.analyzers.base_calibration_analyzer idmtools_calibra.analyzers.rmse_analyzer idmtools_calibra.cli idmtools_calibra.cli.commands idmtools_calibra.cli.utils idmtools_calibra.output idmtools_calibra.output.spatial_output idmtools_calibra.plotters idmtools_calibra.plotters.base_plotter idmtools_calibra.plotters.likelihood_plotter idmtools_calibra.plotters.optim_tool_pbnb_plotter idmtools_calibra.plotters.optim_tool_plotter idmtools_calibra.plotters.optim_tool_spsa_plotter idmtools_calibra.plotters.separatrix_bhm_plotter idmtools_calibra.plotters.site_data_plotter idmtools_calibra.resamplers idmtools_calibra.resamplers.base_resampler idmtools_calibra.resamplers.calibration_point idmtools_calibra.resamplers.calibration_points idmtools_calibra.resamplers.cramer_rao_resampler idmtools_calibra.resamplers.random_perturbation_resampler idmtools_calibra.utilities idmtools_calibra.utilities.parsers idmtools_calibra.utilities.parsers.JSON idmtools_calibra.utilities.parsers.bin2np idmtools_calibra.utilities.parsers.dict2pd idmtools_calibra.utilities.parsers.malaria_summary idmtools_calibra.utilities.parsers.np2json idmtools_calibra.utilities.parsers.np2pd idmtools_calibra.utilities.parsers.pd2csv idmtools_calibra.utilities.display idmtools_calibra.utilities.distro idmtools_calibra.utilities.encoding idmtools_calibra.utilities.helper idmtools_calibra.utilities.ll_all_generator idmtools_calibra.utilities.ll_calculators idmtools_calibra.utilities.mod_fn idmtools_calibra.utilities.parameter_set idmtools_calibra.utilities.prior idmtools_calibra.utilities.resume_manager idmtools_calibra.calib_base_app idmtools_calibra.calib_manager idmtools_calibra.calib_site idmtools_calibra.iteration_state idmtools_calibra.process_state idmtools_calibra.resample_manager idmtools_calibra.rmse_site idmtools_calibra.singularity_json_python_task done writing... done writing additional files... opensearchdone copying static files... done copying extra files... done dumping object inventory... done Updating searchtools for Read the Docs search... build succeeded. The HTML page is in ../_readthedocs/htmlzip.