Read the Docs build information
Build id: 194451
Project: strategic-data-pty-ltd-pmhc-mds-spec
Version: v2
Commit: 084c89002e106c19f327cec5c04e4e79dfb90cec
Date: 2019-03-24T23:54:42.510094Z
State: finished
Success: True


[rtd-command-info] start-time: 2019-03-24T23:54:44.651991Z, end-time: 2019-03-24T23:54:51.106757Z, duration: 6, exit-code: 0
git clone --no-single-branch --depth 50 git@github.com:strategicdata/pmhc-mds-spec.git .
Cloning into '.'...

[rtd-command-info] start-time: 2019-03-24T23:54:51.286746Z, end-time: 2019-03-24T23:54:51.416836Z, duration: 0, exit-code: 0
git checkout --force origin/v2
Note: checking out 'origin/v2'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 084c890 Updating data model diagram for V2.

[rtd-command-info] start-time: 2019-03-24T23:54:51.478978Z, end-time: 2019-03-24T23:54:51.487353Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2019-03-24T23:54:52.107033Z, end-time: 2019-03-24T23:54:54.900581Z, duration: 2, exit-code: 0
python3.7 -mvirtualenv --no-site-packages --no-download 
Using base prefix '/home/docs/.pyenv/versions/3.7.1'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/strategic-data-pty-ltd-pmhc-mds-spec/envs/v2/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/strategic-data-pty-ltd-pmhc-mds-spec/envs/v2/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2019-03-24T23:54:54.991082Z, end-time: 2019-03-24T23:54:57.347348Z, duration: 2, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/strategic-data-pty-ltd-pmhc-mds-spec/.cache/pip pip
Collecting pip
  Downloading https://files.pythonhosted.org/packages/d8/f3/413bab4ff08e1fc4828dfc59996d721917df8e8583ea85385d51125dceff/pip-19.0.3-py2.py3-none-any.whl (1.4MB)
Installing collected packages: pip
  Found existing installation: pip 18.1
    Uninstalling pip-18.1:
      Successfully uninstalled pip-18.1
Successfully installed pip-19.0.3

[rtd-command-info] start-time: 2019-03-24T23:54:57.404721Z, end-time: 2019-03-24T23:55:19.994271Z, duration: 22, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/strategic-data-pty-ltd-pmhc-mds-spec/.cache/pip Pygments==2.2.0 setuptools<40 docutils==0.13.1 mock==1.0.1 pillow==2.6.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.4.0 sphinx<1.8 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<0.6
Collecting Pygments==2.2.0
  Downloading https://files.pythonhosted.org/packages/02/ee/b6e02dc6529e82b75bb06823ff7d005b141037cb1416b10c6f00fc419dca/Pygments-2.2.0-py2.py3-none-any.whl (841kB)
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Collecting commonmark==0.5.4
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Collecting Jinja2>=2.3 (from sphinx<1.8)
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Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx<1.8)
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Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx<1.8)
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Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx<1.8)
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Building wheels for collected packages: mock, pillow, commonmark
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/strategic-data-pty-ltd-pmhc-mds-spec/.cache/pip/wheels/7e/72/92/744b532c779242b57aab4bcba80c312b30c069bbd60025e7e6
  Building wheel for pillow (setup.py): started
  Building wheel for pillow (setup.py): finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/strategic-data-pty-ltd-pmhc-mds-spec/.cache/pip/wheels/de/0e/6b/556798d1ac8762a076ddff5b20f65b2e6cc2ae13b0e683c263
  Building wheel for commonmark (setup.py): started
  Building wheel for commonmark (setup.py): finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/strategic-data-pty-ltd-pmhc-mds-spec/.cache/pip/wheels/a0/f4/35/019d917f6875107ade3aad634c982f5c6b604c5631cddf20ac
Successfully built mock pillow commonmark
Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, commonmark, recommonmark, pyparsing, six, packaging, pytz, babel, sphinxcontrib-websupport, urllib3, chardet, idna, certifi, requests, MarkupSafe, Jinja2, snowballstemmer, imagesize, sphinx, sphinx-rtd-theme, readthedocs-sphinx-ext
  Found existing installation: setuptools 40.6.3
    Uninstalling setuptools-40.6.3:
      Successfully uninstalled setuptools-40.6.3
Successfully installed Jinja2-2.10 MarkupSafe-1.1.1 Pygments-2.2.0 alabaster-0.7.12 babel-2.6.0 certifi-2019.3.9 chardet-3.0.4 commonmark-0.5.4 docutils-0.13.1 idna-2.8 imagesize-1.1.0 mock-1.0.1 packaging-19.0 pillow-2.6.1 pyparsing-2.3.1 pytz-2018.9 readthedocs-sphinx-ext-0.5.17 recommonmark-0.4.0 requests-2.21.0 setuptools-39.2.0 six-1.12.0 snowballstemmer-1.2.1 sphinx-1.7.9 sphinx-rtd-theme-0.4.3 sphinxcontrib-websupport-1.1.0 urllib3-1.24.1

[rtd-command-info] start-time: 2019-03-24T23:55:20.586664Z, end-time: 2019-03-24T23:55:20.647245Z, duration: 0, exit-code: 0
cat doc/conf.py
# -*- coding: utf-8 -*-
#
# test documentation build configuration file, created by
# sphinx-quickstart on Fri Oct  9 19:07:47 2015.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

import sys
import os
import shlex

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.

# extensions = ['cloud_sptheme.ext.table_styling']
extensions = []


# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The encoding of source files.
#source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'PMHC MDS'
copyright = u'2018, Australian Government - Department of Health'
author = u'PMHC MDS Working Group'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#

def get_version():

   version = 'v2.0.0'

   try:
      version = os.environ["GIT_VERSION"]
   except KeyError:
      print "Please set the environment variable GIT_VERSION"

   return version

# The short X.Y version.
# version = get_version().lstrip('v').rstrip()

version = "Version 2.0.0"

# The full version, including alpha/beta/rc tags.
release = version

current_year = '2018-19'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ['record/*', 'data-specification/include/*', 'boilerplate/*', 'figures/*', 'data/*']

# The reST default role (used for this markup: `text`) to use for all
# documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
#keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False


# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
html_theme = 'sphinx_rtd_theme'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
#html_theme_path = []

# The name for this set of Sphinx documents.  If None, it defaults to
# "<project> v<release> documentation".
#html_title = None

# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static', 'data-specification/_data/_orig']

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
html_extra_path = ['CNAME', '.nojekyll']

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
#html_domain_indices = True

# If false, no index is generated.
#html_use_index = True

# If true, the index is split into individual pages for each letter.
#html_split_index = False

# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr'
#html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# Now only 'ja' uses this config value
#html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'PMHC'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#'papersize': 'letterpaper',

# The font size ('10pt', '11pt' or '12pt').
#'pointsize': '10pt',

# Additional stuff for the LaTeX preamble.
#'preamble': '',

# Latex figure (float) alignment
#'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
  (master_doc, 'PMHC.tex', u'Primary Mental Health Care Minimum Dataset specification',
   author, 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'PMHC MDS Specification', u'Primary Mental Health Care Minimum Dataset specification',
     [author], 1)
]

# If true, show URL addresses after external links.
#man_show_urls = False


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
  (master_doc, 'PMHC', u'Primary Mental Health Care Minimum Dataset specification',
   author, 'PMHC', 'Primary Mental Health Care Minimum Dataset specification',
   'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#texinfo_appendices = []

# If false, no module index is generated.
#texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#texinfo_no_detailmenu = False

on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
if not on_rtd:  # only import and set the theme if we're building docs locally
    import sphinx_rtd_theme
    html_theme = 'sphinx_rtd_theme'
    html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# For substitutions in docs
# see https://github.com/hoccleve-archive/hocl.tk/blob/70b71b5a265d0b1d64c5cb6e43b686d03ead4078/docs/conf.py#L48

start_year = 2015
end_year = start_year + 2
current_year = str(start_year) + "-" + str((end_year) - 2000)
last_year = start_year - 1
previous_year = str(last_year) + "-" + str((last_year + 1) - 2000)

rst_epilog = """
.. |current-year| replace:: %(current_year)s
..
.. |previous-year| replace:: %(previous_year)s
..
.. |current-year-bold| replace:: **%(current_year)s**
..
.. |start-year| replace:: %(start_year)s
..
.. |end-year| replace:: %(end_year)s
..
""" % dict(current_year=current_year, start_year=start_year, end_year=end_year, previous_year=previous_year)

numfig = True
# numfig_secnum_depth = 1

#html_style = 'default.css'

# CSS overides
def setup(app):
#   app.add_javascript('https://hypothes.is/embed.js')
   app.add_stylesheet("custom.css")




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for mulitple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://media.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "v2",
    'version_slug': "v2",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://media.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("v2", "/en/v2/"),
    ("v1", "/en/v1/"),
    ],
    'downloads': [ 
    ("htmlzip", "//readthedocs.com/projects/strategic-data-pty-ltd-pmhc-mds-spec/downloads/htmlzip/v2/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'strategic-data-pty-ltd-pmhc-mds-spec',
    'name': u'pmhc-mds-spec',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://docs.pmhc-mds.com/en/v1/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/doc/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'strategicdata',
    'github_repo': 'pmhc-mds-spec',
    'github_version': 'v2',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'v2',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'v2',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '084c8900',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

[rtd-command-info] start-time: 2019-03-24T23:55:20.710747Z, end-time: 2019-03-24T23:55:33.201818Z, duration: 12, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.7.9
loading translations [en]... done
making output directory...
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building [readthedocs]: targets for 46 source files that are out of date
updating environment: 46 added, 0 changed, 0 removed
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/home/docs/checkouts/readthedocs.org/user_builds/strategic-data-pty-ltd-pmhc-mds-spec/checkouts/v2/doc/data-specification/change-log.rst:368: WARNING: undefined label: dfn-organisation_status (if the link has no caption the label must precede a section header)
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build succeeded, 1 warnings.

The HTML pages are in _build/html.

[rtd-command-info] start-time: 2019-03-24T23:55:33.346346Z, end-time: 2019-03-24T23:55:45.817250Z, duration: 12, exit-code: 0
python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia
Running Sphinx v1.7.9
loading translations [en]... done
making output directory...
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preparing documents... done
assembling single document... user-documentation/index user-documentation/passwords user-documentation/home user-documentation/organisations user-documentation/users user-documentation/upload user-documentation/data-entry user-documentation/reporting user-documentation/data-extract user-documentation/slk user-documentation/change-log data-specification/index data-specification/reporting-arrangements data-specification/identifier-management data-specification/data-model-and-specifications data-specification/upload-specification data-specification/data-item-summary data-specification/form-creation data-specification/validation-rules data-specification/ataps/ataps-pmhc-mapping data-specification/test-data-sets data-specification/change-log faqs/index faqs/concepts-processes/index faqs/concepts-processes/scope faqs/concepts-processes/data-definitions faqs/concepts-processes/outcome-measures faqs/concepts-processes/privacy faqs/concepts-processes/identifiers faqs/concepts-processes/phn-access faqs/concepts-processes/support faqs/concepts-processes/reports faqs/concepts-processes/miscellaneous faqs/system/index faqs/system/access faqs/system/data-entry faqs/system/uploading faqs/system/additional-data faqs/system/checking faqs/system/storing faqs/system/development faqs/system/mailing-list faqs/system/help-desk faqs/change-log /home/docs/checkouts/readthedocs.org/user_builds/strategic-data-pty-ltd-pmhc-mds-spec/checkouts/v2/doc/data-specification/change-log.rst:368: WARNING: undefined label: dfn-organisation_status (if the link has no caption the label must precede a section header)

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