Read the Docs build information Build id: 184334 Project: cyverse-container-camp-workshop-2019 Version: latest Commit: e4db8820ec8a8b167c2555c78c7353a1cd2fda8f Date: 2019-02-18T17:21:00.695820Z State: finished Success: True [rtd-command-info] start-time: 2019-02-18T17:21:01.181781Z, end-time: 2019-02-18T17:21:04.840026Z, duration: 3, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/CyVerse-learning-materials/container_camp_workshop_2019.git . Cloning into '.'... [rtd-command-info] start-time: 2019-02-18T17:21:05.078968Z, end-time: 2019-02-18T17:21:06.094482Z, duration: 1, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at e4db882 Update agenda.rst [rtd-command-info] start-time: 2019-02-18T17:21:06.161924Z, end-time: 2019-02-18T17:21:06.180425Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-02-18T17:21:06.822963Z, end-time: 2019-02-18T17:21:09.278669Z, duration: 2, exit-code: 0 python2.7 -mvirtualenv --no-site-packages --no-download New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/bin/python2.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2019-02-18T17:21:09.342791Z, end-time: 2019-02-18T17:21:11.351113Z, duration: 2, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/.cache/pip pip Collecting pip Downloading https://files.pythonhosted.org/packages/d7/41/34dd96bd33958e52cb4da2f1bf0818e396514fd4f4725a79199564cd0c20/pip-19.0.2-py2.py3-none-any.whl (1.4MB) Installing collected packages: pip Found existing installation: pip 18.1 Uninstalling pip-18.1: Successfully uninstalled pip-18.1 Successfully installed pip-19.0.2 [rtd-command-info] start-time: 2019-02-18T17:21:11.411364Z, end-time: 2019-02-18T17:21:33.184317Z, duration: 21, exit-code: 0 python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/.cache/pip Pygments==2.2.0 setuptools<40 docutils==0.13.1 mock==1.0.1 pillow==2.6.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.4.0 sphinx<1.8 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<0.6 DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. 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python_version < "3.5" in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (3.6.6) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (1.1.0) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/lib/python2.7/site-packages (from sphinx->-r requirements.txt (line 1)) (1.12.0) Requirement already satisfied: commonmark<=0.5.4 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/lib/python2.7/site-packages (from recommonmark->-r requirements.txt (line 2)) (0.5.4) Requirement already satisfied: pytz>=0a in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/lib/python2.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r requirements.txt (line 1)) (2018.9) Requirement already satisfied: urllib3<1.25,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (1.24.1) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (2018.11.29) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (3.0.4) Requirement already satisfied: idna<2.9,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/lib/python2.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 1)) (2.8) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/lib/python2.7/site-packages (from Jinja2>=2.3->sphinx->-r requirements.txt (line 1)) (1.1.0) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/envs/latest/lib/python2.7/site-packages (from packaging->sphinx->-r requirements.txt (line 1)) (2.3.1) Building wheels for collected packages: sphinx-bootstrap-theme, guzzle-sphinx-theme Building wheel for sphinx-bootstrap-theme (setup.py): started Building wheel for sphinx-bootstrap-theme (setup.py): finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/.cache/pip/wheels/01/3c/98/f37c5ef813bb7262c17c566da10f9f7e4f6ff4b897d0a4209c Building wheel for guzzle-sphinx-theme (setup.py): started Building wheel for guzzle-sphinx-theme (setup.py): finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/.cache/pip/wheels/6e/68/e9/4626607977db13794bfaf48afab2cf05487bb4d3612c09dcee Successfully built sphinx-bootstrap-theme guzzle-sphinx-theme Installing collected packages: sphinxcontrib-images, sphinx-bootstrap-theme, guzzle-sphinx-theme Successfully installed guzzle-sphinx-theme-0.7.11 sphinx-bootstrap-theme-0.6.5 sphinxcontrib-images-0.8.0 [rtd-command-info] start-time: 2019-02-18T17:21:36.720842Z, end-time: 2019-02-18T17:21:36.792583Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # General information about the project. import sys import os sys.path.insert(0, os.path.dirname(__file__)) from misc.cyverse_sphinx_conf import * # noqa project = 'CyVerse Container Camp 2019: Container Technology for Scientific Research' copyright = '2019, CyVerse' author = 'CyVerse' version = '0.1.0' release = '0.1.0' epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for mulitple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. 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[ 96%] cyverse/../img/atmo_launch1.png copying images... [ 98%] getting_started/../img/cyverse_rgb.png copying images... [100%] docker/../img/jn_ss.png copying TeX support files... done build succeeded, 49 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). 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[11] [12] Chapter 5. [13] [14] Chapter 6. [15] [16] Chapter 7. [17] [18] Chapter 8. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [19 <./docker.png>] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [20] [21] [22] ! Package inputenc Error: Unicode char ☺ (U+263A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.801 ...to answer any of these questions yet! ☺ In this case, the client ... [23] [24] [25 <./static_site_docker.png>] Underfull \hbox (badness 10000) in paragraph at lines 874--876 \T1/pcr/m/n/10 Docker host. 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Underfull \hbox (badness 10000) in paragraph at lines 4372--4373 []\T1/pcr/m/n/10 git clone https://github.com/CyVerse-learning-materials/ [123] Overfull \hbox (94.82553pt too wide) in paragraph at lines 4419--4420 [][] [124] [125 <./static_site_docker2.png>] [126] Chapter 18. No file CyVerseDocumentation.ind. [127] (./CyVerseDocumentation.aux) Package rerunfilecheck Warning: File `CyVerseDocumentation.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on CyVerseDocumentation.pdf (131 pages, 6599079 bytes). Transcript written on CyVerseDocumentation.log. [rtd-command-info] start-time: 2019-02-18T17:22:03.980995Z, end-time: 2019-02-18T17:22:04.095707Z, duration: 0, exit-code: 0 makeindex -s python.ist CyVerseDocumentation.idx This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file CyVerseDocumentation.idx...done (0 entries accepted, 0 rejected). Nothing written in CyVerseDocumentation.ind. Transcript written in CyVerseDocumentation.ilg. [rtd-command-info] start-time: 2019-02-18T17:22:04.165087Z, end-time: 2019-02-18T17:22:15.275287Z, duration: 11, exit-code: 0 pdflatex -interaction=nonstopmode /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/checkouts/latest/./_build/latex/CyVerseDocumentation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-worksh op-2019/checkouts/latest/./_build/latex/CyVerseDocumentation.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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[11] [12] Chapter 5. [13] [14] Chapter 6. [15] [16] Chapter 7. [17] [18] Chapter 8. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [19 <./docker.png>] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [20] [21] [22] ! Package inputenc Error: Unicode char ☺ (U+263A) (inputenc) not set up for use with LaTeX. See the inputenc package documentation for explanation. Type H for immediate help. ... l.801 ...to answer any of these questions yet! ☺ In this case, the client ... [23] [24] [25 <./static_site_docker.png>] Underfull \hbox (badness 10000) in paragraph at lines 874--876 \T1/pcr/m/n/10 Docker host. 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[rtd-command-info] start-time: 2019-02-18T17:22:15.352944Z, end-time: 2019-02-18T17:22:15.417328Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/checkouts/latest/./_build/latex/CyVerseDocumentation.pdf /home/docs/checkouts/readthedocs.org/user_builds/cyverse-container-camp-workshop-2019/artifacts/latest/sphinx_pdf/cyverse-container-camp-workshop-2019.pdf [rtd-command-info] start-time: 2019-02-18T17:22:15.476404Z, end-time: 2019-02-18T17:22:45.518310Z, duration: 30, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.7.9 loading translations [en]... done making output directory... loading pickled environment... not yet created building [mo]: targets for 0 po files that are out of date building [epub]: targets for 49 source files that are out of date updating environment: 49 added, 0 changed, 0 removed reading sources... 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