Read the Docs build information Build id: 184095 Project: tiledb-inc-tiledb-py Version: latest Commit: 4cfbb42dcaf49f11a60d0e4b1b2b97ee54321823 Date: 2019-02-16T03:25:41.068310Z State: finished Success: False [rtd-command-info] start-time: 2019-02-16T03:25:41.608154Z, end-time: 2019-02-16T03:25:41.615260Z, duration: 0, exit-code: 0 git remote set-url origin https://github.com/TileDB-Inc/TileDB-Py.git [rtd-command-info] start-time: 2019-02-16T03:25:41.681700Z, end-time: 2019-02-16T03:25:41.999599Z, duration: 0, exit-code: 0 git fetch --tags --prune --prune-tags --depth 50 From https://github.com/TileDB-Inc/TileDB-Py d8c8983..4cfbb42 dev -> origin/dev * [new branch] ihn/fix_filterlist_empty_cnstr -> origin/ihn/fix_filterlist_empty_cnstr + 4e0e16b...63b9d79 ss/update-consolidation -> origin/ss/update-consolidation (forced update) [rtd-command-info] start-time: 2019-02-16T03:25:42.241320Z, end-time: 2019-02-16T03:25:42.250868Z, duration: 0, exit-code: 0 git checkout --force origin/dev Previous HEAD position was d8c8983 Add --debug option to set CMAKE_BUILD_TYPE=Debug via setup.py HEAD is now at 4cfbb42 Fix windows build w/ '--tiledb' (windows conda) [rtd-command-info] start-time: 2019-02-16T03:25:42.319974Z, end-time: 2019-02-16T03:25:42.346599Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-02-16T03:25:44.009809Z, end-time: 2019-02-16T03:27:06.806932Z, duration: 82, exit-code: 0 conda env create --quiet --name latest --file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/doc/source/conda-env.yml Solving environment: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [rtd-command-info] start-time: 2019-02-16T03:27:06.950090Z, end-time: 2019-02-16T03:27:23.847726Z, duration: 16, exit-code: 0 conda install --yes --quiet --name latest mock pillow sphinx sphinx_rtd_theme Solving environment: ...working... done ## Package Plan ## environment location: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest added / updated specs: - mock - pillow - sphinx - sphinx_rtd_theme The following packages will be downloaded: package | build ---------------------------|----------------- pyopenssl-18.0.0 | py35_0 82 KB imagesize-1.1.0 | py35_0 9 KB sphinxcontrib-1.0 | py35_1 3 KB zstd-1.3.7 | h0b5b093_0 887 KB cffi-1.11.5 | py35he75722e_1 213 KB libpng-1.6.36 | hbc83047_0 346 KB cryptography-2.3.1 | py35hc365091_0 585 KB idna-2.7 | py35_0 133 KB libtiff-4.0.10 | h2733197_2 604 KB sphinxcontrib-websupport-1.1.0| py35_1 36 KB jpeg-9b | h024ee3a_2 248 KB snowballstemmer-1.2.1 | py35h5435977_0 84 KB asn1crypto-0.24.0 | py35_0 156 KB requests-2.19.1 | py35_0 97 KB chardet-3.0.4 | py35_1 191 KB pygments-2.2.0 | py35h0f41973_0 1.3 MB sphinx-1.7.9 | py35_0 1.6 MB pycparser-2.19 | py35_0 175 KB markupsafe-1.0 | py35h14c3975_1 25 KB ca-certificates-2019.1.23 | 0 126 KB certifi-2018.8.24 | py35_1 139 KB sphinx_rtd_theme-0.4.1 | py35_0 5.1 MB pysocks-1.6.8 | py35_0 22 KB babel-2.6.0 | py35_0 5.7 MB freetype-2.9.1 | h8a8886c_1 822 KB pytz-2018.5 | py35_0 231 KB pbr-4.2.0 | py35_0 118 KB pillow-5.2.0 | py35heded4f4_0 589 KB jinja2-2.10 | py35_0 181 KB docutils-0.14 | py35hd11081d_0 702 KB mock-2.0.0 | py35h70ca42c_0 105 KB urllib3-1.23 | py35_0 153 KB alabaster-0.7.11 | py35_0 16 KB olefile-0.46 | py35_0 48 KB ------------------------------------------------------------ Total: 20.7 MB The following NEW packages will be INSTALLED: alabaster: 0.7.11-py35_0 asn1crypto: 0.24.0-py35_0 babel: 2.6.0-py35_0 cffi: 1.11.5-py35he75722e_1 chardet: 3.0.4-py35_1 cryptography: 2.3.1-py35hc365091_0 docutils: 0.14-py35hd11081d_0 freetype: 2.9.1-h8a8886c_1 idna: 2.7-py35_0 imagesize: 1.1.0-py35_0 jinja2: 2.10-py35_0 jpeg: 9b-h024ee3a_2 libpng: 1.6.36-hbc83047_0 libtiff: 4.0.10-h2733197_2 markupsafe: 1.0-py35h14c3975_1 mock: 2.0.0-py35h70ca42c_0 olefile: 0.46-py35_0 pbr: 4.2.0-py35_0 pillow: 5.2.0-py35heded4f4_0 pycparser: 2.19-py35_0 pygments: 2.2.0-py35h0f41973_0 pyopenssl: 18.0.0-py35_0 pysocks: 1.6.8-py35_0 pytz: 2018.5-py35_0 requests: 2.19.1-py35_0 snowballstemmer: 1.2.1-py35h5435977_0 sphinx: 1.7.9-py35_0 sphinx_rtd_theme: 0.4.1-py35_0 sphinxcontrib: 1.0-py35_1 sphinxcontrib-websupport: 1.1.0-py35_1 urllib3: 1.23-py35_0 zstd: 1.3.7-h0b5b093_0 The following packages will be UPDATED: ca-certificates: 2018.11.29-ha4d7672_0 conda-forge --> 2019.1.23-0 The following packages will be DOWNGRADED: certifi: 2018.8.24-py35_1001 conda-forge --> 2018.8.24-py35_1 openssl: 1.0.2p-h14c3975_1002 conda-forge --> 1.0.2p-h14c3975_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [rtd-command-info] start-time: 2019-02-16T03:27:24.083386Z, end-time: 2019-02-16T03:27:25.795532Z, duration: 1, exit-code: 0 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/python -m pip install -U --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip recommonmark readthedocs-sphinx-ext Collecting recommonmark Using cached https://files.pythonhosted.org/packages/9b/3d/92ea48401622510e57b4bdaa74dc9db2fb9e9e892324b48f9c02d716a93a/recommonmark-0.5.0-py2.py3-none-any.whl Collecting readthedocs-sphinx-ext Using cached https://files.pythonhosted.org/packages/a5/19/abebb2ac7554119cc56d77ce03abcb17b200d6cc3b04dce05cd31248f06f/readthedocs_sphinx_ext-0.5.16-py2.py3-none-any.whl Requirement already satisfied, skipping upgrade: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from recommonmark) (0.14) Collecting commonmark>=0.7.3 (from recommonmark) Using cached https://files.pythonhosted.org/packages/ab/ca/439c88039583a29564a0043186875258e9a4f041fb5c422cd387b8e10175/commonmark-0.8.1-py2.py3-none-any.whl Requirement already satisfied, skipping upgrade: sphinx>=1.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from recommonmark) (1.7.9) Requirement already satisfied, skipping upgrade: requests in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from readthedocs-sphinx-ext) (2.19.1) Collecting future (from commonmark>=0.7.3->recommonmark) Requirement already satisfied, skipping upgrade: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.11.0) Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (2.10) Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (2.2.0) Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.2.1) Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (2.6.0) Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (0.7.11) Requirement already satisfied, skipping upgrade: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.1.0) Requirement already satisfied, skipping upgrade: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (40.4.3) Requirement already satisfied, skipping upgrade: packaging in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (19.0) Requirement already satisfied, skipping upgrade: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.1.0) Requirement already satisfied, skipping upgrade: urllib3<1.24,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (1.23) Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (2018.8.24) Requirement already satisfied, skipping upgrade: idna<2.8,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (2.7) Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (3.0.4) Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from Jinja2>=2.3->sphinx>=1.3.1->recommonmark) (1.0) Requirement already satisfied, skipping upgrade: pytz>=0a in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from babel!=2.0,>=1.3->sphinx>=1.3.1->recommonmark) (2018.5) Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from packaging->sphinx>=1.3.1->recommonmark) (2.3.1) Installing collected packages: future, commonmark, recommonmark, readthedocs-sphinx-ext Successfully installed commonmark-0.8.1 future-0.17.1 readthedocs-sphinx-ext-0.5.16 recommonmark-0.5.0 [rtd-command-info] start-time: 2019-02-16T03:27:25.853961Z, end-time: 2019-02-16T03:27:26.771672Z, duration: 0, exit-code: 1 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/python ./setup.py install --force cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by cmake) libtiledb_exists checking 'library_dirs': [] running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by cmake) /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/.eggs/setuptools_scm-3.2.0-py3.5.egg/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors warnings.warn('"%s" is shallow and may cause errors' % (wd.path,)) libtiledb_exists checking 'library_dirs': [] Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-backport-1.4.2/build... CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-backport-1.4.2/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-backport-1.4.2'] Traceback (most recent call last): File "./setup.py", line 475, in 'Programming Language :: Python :: 3.6', File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages/setuptools/__init__.py", line 140, in setup return distutils.core.setup(**attrs) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/distutils/core.py", line 148, in setup dist.run_commands() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/distutils/dist.py", line 955, in run_commands self.run_command(cmd) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages/setuptools/command/install.py", line 67, in run self.do_egg_install() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages/setuptools/command/install.py", line 109, in do_egg_install self.run_command('bdist_egg') File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/distutils/dist.py", line 974, in run_command cmd_obj.run() File "./setup.py", line 343, in run find_or_install_libtiledb(self) File "./setup.py", line 208, in find_or_install_libtiledb install_dir = build_libtiledb(src_dir) File "./setup.py", line 182, in build_libtiledb subprocess.check_call(cmake_cmd, cwd=libtiledb_build_dir) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/subprocess.py", line 271, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-backport-1.4.2/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_HDFS=ON', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-backport-1.4.2']' returned non-zero exit status 1