Read the Docs build information Build id: 1826060 Project: institute-for-disease-modeling-emod-api Version: latest Commit: 7f9dc129f0499a8a83580e8ed04938f5d7e35774 Date: 2023-11-05T21:00:47.108303Z State: finished Success: True [rtd-command-info] start-time: 2023-11-05T21:00:48.327354Z, end-time: 2023-11-05T21:00:50.370346Z, duration: 2, exit-code: 0 git clone --depth 1 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. [rtd-command-info] start-time: 2023-11-05T21:00:50.444500Z, end-time: 2023-11-05T21:00:52.881720Z, duration: 2, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 refs/heads/master:refs/remotes/origin/master Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. From github.com:InstituteforDiseaseModeling/emod-api * [new tag] v1.28.1 -> v1.28.1 * [new tag] v1.28.5 -> v1.28.5 * [new tag] v1.30.1 -> v1.30.1 [rtd-command-info] start-time: 2023-11-05T21:00:53.047243Z, end-time: 2023-11-05T21:00:53.489896Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: switching to 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 7f9dc12 Bump version: 1.30.2 → 1.30.3 [rtd-command-info] start-time: 2023-11-05T21:00:53.557826Z, end-time: 2023-11-05T21:00:53.626539Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-11-05T21:00:53.691842Z, end-time: 2023-11-05T21:00:53.749316Z, duration: 0, exit-code: 0 cat .readthedocs.yml # .readthedocs.yml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Set the version of Python and other tools you might need build: os: ubuntu-20.04 tools: python: "3.9" # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py fail_on_warning: true # Build documentation with MkDocs #mkdocs: # configuration: mkdocs.yml # Optionally build your docs in additional formats such as PDF formats: - htmlzip # Optionally set the version of Python and requirements required to build your docs python: install: - requirements: requirements.txt - requirements: docs/requirements.txt - method: setuptools path: . # Optionally rank topics in search results, between -10 (lower) and 10 (higher). # 0 is normal rank, not no rank # search: # ranking: [rtd-command-info] start-time: 2023-11-05T21:00:59.868422Z, end-time: 2023-11-05T21:00:59.946750Z, duration: 0, exit-code: 0 asdf global python 3.9.18 [rtd-command-info] start-time: 2023-11-05T21:01:00.316130Z, end-time: 2023-11-05T21:01:01.569827Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.9.18.final.0-64 in 882ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2023-11-05T21:01:01.659579Z, end-time: 2023-11-05T21:01:15.221277Z, duration: 13, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages (23.1) Collecting pip Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/47/6a/453160888fab7c6a432a6e25f8afe6256d0d9f2cbd25971021da6491d899/pip-23.3.1-py3-none-any.whl (2.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 17.3 MB/s eta 0:00:00 Requirement already satisfied: 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sha256=0f85eb1d0dec54eea6617bab283ec0abdb95149d62c11231b10aa488074f41f0 Stored in directory: /tmp/pip-ephem-wheel-cache-xr2fto0p/wheels/b0/9c/b9/694dc9fa35b338adf315c91781d2150a3bccd224174d897720 Successfully built prodict Installing collected packages: pytz, prodict, parse, tzdata, threadpoolctl, six, pyyaml, pyproj, pyparsing, pillow, numpy, lz4, kiwisolver, joblib, importlib-resources, graphviz, geographiclib, fonttools, cycler, shapely, scipy, python-dateutil, contourpy, scikit-learn, pandas, matplotlib Successfully installed contourpy-1.2.0 cycler-0.12.1 fonttools-4.44.0 geographiclib-2.0 graphviz-0.20.1 importlib-resources-6.1.0 joblib-1.3.2 kiwisolver-1.4.5 lz4-4.3.2 matplotlib-3.8.1 numpy-1.26.1 pandas-2.1.2 parse-1.19.1 pillow-10.1.0 prodict-0.8.18 pyparsing-3.1.1 pyproj-3.6.1 python-dateutil-2.8.2 pytz-2023.3.post1 pyyaml-6.0.1 scikit-learn-1.3.2 scipy-1.11.3 shapely-2.0.2 six-1.16.0 threadpoolctl-3.2.0 tzdata-2023.3 [rtd-command-info] start-time: 2023-11-05T21:01:58.406497Z, 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mistune, mdurl, jupyterlab-pygments, jsonpointer, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, bleach, attrs, asttokens, terminado, stack-data, sphinxcontrib-napoleon, referencing, plantweb, matplotlib-inline, markdown-it-py, jupyter-core, jedi, deprecated, comm, cffi, beautifulsoup4, async-lru, arrow, anyio, pynacl, mdit-py-plugins, jupyter-server-terminals, jupyter-client, jsonschema-specifications, isoduration, ipython, cryptography, argon2-cffi-bindings, jsonschema, ipykernel, argon2-cffi, pygithub, nbformat, nbclient, jupyter-events, nbconvert, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, sphinx, sphinxcontrib-jquery, sphinxext-remoteliteralinclude, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton, nbsphinx, myst-parser Attempting uninstall: docutils Found existing installation: docutils 0.20.1 Uninstalling docutils-0.20.1: Successfully uninstalled docutils-0.20.1 Attempting uninstall: sphinx Found existing installation: Sphinx 7.2.6 Uninstalling Sphinx-7.2.6: Successfully uninstalled Sphinx-7.2.6 Successfully installed anyio-4.0.0 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 attrs-23.1.0 beautifulsoup4-4.12.2 bleach-6.1.0 cffi-1.16.0 comm-0.1.4 cryptography-41.0.5 debugpy-1.8.0 decorator-5.1.1 defusedxml-0.7.1 deprecated-1.2.14 docutils-0.18.1 exceptiongroup-1.1.3 executing-2.0.1 fastjsonschema-2.18.1 fqdn-1.5.1 ipykernel-6.26.0 ipython-8.17.2 isoduration-20.11.0 jedi-0.19.1 json5-0.9.14 jsonpointer-2.4 jsonschema-4.19.2 jsonschema-specifications-2023.7.1 jupyter-client-8.5.0 jupyter-core-5.5.0 jupyter-events-0.8.0 jupyter-lsp-2.2.0 jupyter-server-2.9.1 jupyter-server-terminals-0.4.4 jupyterlab-4.0.8 jupyterlab-pygments-0.2.2 jupyterlab-server-2.25.0 markdown-it-py-3.0.0 matplotlib-inline-0.1.6 mdit-py-plugins-0.4.0 mdurl-0.1.2 mistune-3.0.2 myst-parser-2.0.0 nbclient-0.8.0 nbconvert-7.10.0 nbformat-5.9.2 nbsphinx-0.9.3 nest-asyncio-1.5.8 notebook-shim-0.2.3 overrides-7.4.0 pandocfilters-1.5.0 parso-0.8.3 pexpect-4.8.0 plantweb-1.2.1 platformdirs-3.11.0 pockets-0.9.1 prometheus-client-0.18.0 prompt-toolkit-3.0.39 psutil-5.9.6 ptyprocess-0.7.0 pure-eval-0.2.2 pycparser-2.21 pygithub-1.59.1 pyjwt-2.8.0 pynacl-1.5.0 python-json-logger-2.0.7 pyzmq-25.1.1 readthedocs-sphinx-search-0.3.1 referencing-0.30.2 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.12.0 send2trash-1.8.2 sniffio-1.3.0 soupsieve-2.5 sphinx-6.2.1 sphinx-copybutton-0.5.2 sphinx-rtd-theme-1.2.2 sphinxcontrib-jquery-4.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxext-remoteliteralinclude-0.3.0 stack-data-0.6.3 terminado-0.17.1 tinycss2-1.2.1 tomli-2.0.1 tornado-6.3.3 traitlets-5.13.0 types-python-dateutil-2.8.19.14 typing-extensions-4.8.0 uri-template-1.3.0 wcwidth-0.2.9 webcolors-1.13 webencodings-0.5.1 websocket-client-1.6.4 wrapt-1.15.0 [rtd-command-info] start-time: 2023-11-05T21:02:29.212375Z, end-time: 2023-11-05T21:02:30.391428Z, duration: 1, exit-code: 0 python ./setup.py install --force /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running install /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: EasyInstallDeprecationWarning: easy_install command is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` and ``easy_install``. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://github.com/pypa/setuptools/issues/917 for details. ******************************************************************************** !! self.initialize_options() running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' adding license file 'LICENSE' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/multidim_plotter.py -> build/lib/emod_api copying emod_api/peek_camp.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api creating build/lib/examples copying examples/property_report_to_csv.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/spatial_report.py -> build/lib/examples creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/plot_spat_means.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/PropertiesAndAttributes.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/PreDefinedDistributions.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/Updateable.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics creating build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather creating build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/plot_icj_means.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/plot_prop_report.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/utils.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/icj_to_csv.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization creating build/lib/emod_api/legacy copying emod_api/legacy/plotAllCharts.py -> build/lib/emod_api/legacy copying emod_api/legacy/__init__.py -> build/lib/emod_api/legacy creating build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config creating build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl_viz.py -> build/lib/emod_api/interventions copying emod_api/interventions/migration.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl.py -> build/lib/emod_api/interventions creating build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/demographics/service copying emod_api/demographics/service/service.py -> build/lib/emod_api/demographics/service copying emod_api/demographics/service/grid_construction.py -> build/lib/emod_api/demographics/service copying emod_api/demographics/service/__init__.py -> build/lib/emod_api/demographics/service creating build/lib/emod_api/migration/client copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests copying tests/unittests/test_properties_and_attributes.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying tests/unittests/test_version.py -> build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/plot_spat_means.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PropertiesAndAttributes.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PreDefinedDistributions.py -> build/bdist.linux-x86_64/egg/emod_api/demographics creating build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/service.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Updateable.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/multidim_plotter.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/plot_icj_means.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/plot_prop_report.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/utils.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/icj_to_csv.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization creating build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/legacy/plotAllCharts.py -> build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/legacy/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/legacy creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl_viz.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/migration.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl.py -> build/bdist.linux-x86_64/egg/emod_api/interventions creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration creating build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/peek_camp.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/property_report_to_csv.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_properties_and_attributes.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/plot_spat_means.py to plot_spat_means.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PropertiesAndAttributes.py to PropertiesAndAttributes.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PreDefinedDistributions.py to PreDefinedDistributions.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/service.py to service.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/grid_construction.py to grid_construction.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Updateable.py to Updateable.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/multidim_plotter.py to multidim_plotter.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_icj_means.py to plot_icj_means.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_prop_report.py to plot_prop_report.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/utils.py to utils.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/icj_to_csv.py to icj_to_csv.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/legacy/plotAllCharts.py to plotAllCharts.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/legacy/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl_viz.py to ccdl_viz.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/migration.py to migration.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl.py to ccdl.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/peek_camp.py to peek_camp.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/property_report_to_csv.py to property_report_to_csv.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_properties_and_attributes.py to test_properties_and_attributes.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-39.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-39.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-39: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-39: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-39: module references __file__ emod_api.spatialreports.__pycache__.__main__.cpython-39: module references __file__ examples.__pycache__.insetchart.cpython-39: module references __file__ examples.__pycache__.property_report_to_csv.cpython-39: module references __file__ examples.__pycache__.spatial_report.cpython-39: module references __file__ examples.__pycache__.weather_file.cpython-39: module references __file__ creating dist creating 'dist/emod_api-1.30.3-py3.9.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.30.3-py3.9.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages/emod_api-1.30.3-py3.9.egg Extracting emod_api-1.30.3-py3.9.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Adding emod-api 1.30.3 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages/emod_api-1.30.3-py3.9.egg Processing dependencies for emod-api==1.30.3 Searching for matplotlib==3.8.1 Best match: matplotlib 3.8.1 Adding matplotlib 3.8.1 to easy-install.pth file detected new path './emod_api-1.30.3-py3.9.egg' Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for parse==1.19.1 Best match: parse 1.19.1 Adding parse 1.19.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for graphviz==0.20.1 Best match: graphviz 0.20.1 Adding graphviz 0.20.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for lz4==4.3.2 Best match: lz4 4.3.2 Adding lz4 4.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for scikit-learn==1.3.2 Best match: scikit-learn 1.3.2 Adding scikit-learn 1.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for geographiclib==2.0 Best match: geographiclib 2.0 Adding geographiclib 2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for pyproj==3.6.1 Best match: pyproj 3.6.1 Adding pyproj 3.6.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for shapely==2.0.2 Best match: shapely 2.0.2 Adding shapely 2.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for scipy==1.11.3 Best match: scipy 1.11.3 Adding scipy 1.11.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for pandas==2.1.2 Best match: pandas 2.1.2 Adding pandas 2.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for PyYAML==6.0.1 Best match: PyYAML 6.0.1 Adding PyYAML 6.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for numpy==1.26.1 Best match: numpy 1.26.1 Adding numpy 1.26.1 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for importlib-resources==6.1.0 Best match: importlib-resources 6.1.0 Adding importlib-resources 6.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 Adding python-dateutil 2.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for pyparsing==3.1.1 Best match: pyparsing 3.1.1 Adding pyparsing 3.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for Pillow==10.1.0 Best match: Pillow 10.1.0 Adding Pillow 10.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for packaging==23.2 Best match: packaging 23.2 Adding packaging 23.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for kiwisolver==1.4.5 Best match: kiwisolver 1.4.5 Adding kiwisolver 1.4.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for fonttools==4.44.0 Best match: fonttools 4.44.0 Adding fonttools 4.44.0 to easy-install.pth file Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for cycler==0.12.1 Best match: cycler 0.12.1 Adding cycler 0.12.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for contourpy==1.2.0 Best match: contourpy 1.2.0 Adding contourpy 1.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for threadpoolctl==3.2.0 Best match: threadpoolctl 3.2.0 Adding threadpoolctl 3.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for joblib==1.3.2 Best match: joblib 1.3.2 Adding joblib 1.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for certifi==2023.7.22 Best match: certifi 2023.7.22 Adding certifi 2023.7.22 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for tzdata==2023.3 Best match: tzdata 2023.3 Adding tzdata 2023.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for pytz==2023.3.post1 Best match: pytz 2023.3.post1 Adding pytz 2023.3.post1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for zipp==3.17.0 Best match: zipp 3.17.0 Adding zipp 3.17.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.9/site-packages Finished processing dependencies for emod-api==1.30.3 [rtd-command-info] start-time: 2023-11-05T21:02:32.095980Z, end-time: 2023-11-05T21:02:32.150134Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "emod-api" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ tags.add('emodapi') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude', 'sphinx.ext.viewcode', 'sphinx_search.extension', # search across multiple docsets in domain 'myst_parser', # source files written in MD or RST ] myst_enable_extensions = [ "amsmath", "attrs_inline", "colon_fence", "deflist", "dollarmath", "fieldlist", "html_admonition", "html_image", "linkify", "replacements", "smartquotes", "strikethrough", "substitution", "tasklist", ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # source_suffix = ['.rst', '.md'] # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emod-api' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = 'en' # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_css_files = ['theme_overrides.css'] html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # -- RTD Sphinx search for searching across the entire domain, default parent ------------- if os.environ.get('READTHEDOCS') == 'True': search_project_parent = "institute-for-disease-modeling-idm" search_project = os.environ["READTHEDOCS_PROJECT"] search_version = os.environ["READTHEDOCS_VERSION"] rtd_sphinx_search_default_filter = f"subprojects:{search_project_parent}/{search_version}" rtd_sphinx_search_filters = { "Search this project": f"project:{search_project}/{search_version}", "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}", } # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Define this variable in case it's not defined by the user. # It defaults to `alabaster` which is the default from Sphinx. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_theme html_theme = globals().get('html_theme', 'alabaster') #Add project information to the template context. context = { 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.30.2", "/en/v1.30.2/"), ("v1.30.1", "/en/v1.30.1/"), ("v1.29.6", "/en/v1.29.6/"), ("v1.28.5", "/en/v1.28.5/"), ("v1.28.1", "/en/v1.28.1/"), ("v1.27.4", "/en/v1.27.4/"), ("v1.27.1", "/en/v1.27.1/"), ("v1.26.1", "/en/v1.26.1/"), ("v1.25.1", "/en/v1.25.1/"), ("v1.24.11", "/en/v1.24.11/"), ("v1.24.8", "/en/v1.24.8/"), ("v1.24.1", "/en/v1.24.1/"), ("v1.23.2", "/en/v1.23.2/"), ("v1.23.1", "/en/v1.23.1/"), ("v1.22.11", "/en/v1.22.11/"), ("v1.22.10", "/en/v1.22.10/"), ("v1.22.9", "/en/v1.22.9/"), ("v1.22.1", "/en/v1.22.1/"), ("v1.22.0", "/en/v1.22.0/"), ("v1.21.1", "/en/v1.21.1/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.20.1", "/en/v1.20.1/"), ("v1.19.13", "/en/v1.19.13/"), ("v1.19.2", "/en/v1.19.2/"), ("v1.18.1", "/en/v1.18.1/"), ("v1.17.4", "/en/v1.17.4/"), ("v1.17.3", "/en/v1.17.3/"), ("v1.17.2", "/en/v1.17.2/"), ("v1.16.10", "/en/v1.16.10/"), ("v1.16.5", "/en/v1.16.5/"), ("v1.16.2", "/en/v1.16.2/"), ("v1.15.6", "/en/v1.15.6/"), ("v1.15.4", "/en/v1.15.4/"), ("v1.15.1", "/en/v1.15.1/"), ("v1.14.7", "/en/v1.14.7/"), ("v1.14.1", "/en/v1.14.1/"), ("v1.13.1", "/en/v1.13.1/"), ("v1.12.1", "/en/v1.12.1/"), ("v1.11.7", "/en/v1.11.7/"), ("v1.11.4", "/en/v1.11.4/"), ("v1.11.0", "/en/v1.11.0/"), ("v1.10.8", "/en/v1.10.8/"), ("v1.10.6", "/en/v1.10.6/"), ("v1.10.5", "/en/v1.10.5/"), ("v1.10.3", "/en/v1.10.3/"), ("v1.10.2", "/en/v1.10.2/"), ("v1.9.2", "/en/v1.9.2/"), ("v1.9.1", "/en/v1.9.1/"), ("v1.8.9", "/en/v1.8.9/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': '', 'analytics_code': 'G-SVDSQH04EM', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'G-SVDSQH04EM', 'global_analytics_code': 'UA-17997319-2', 'commit': '7f9dc129', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): for key in context: if key not in html_context: html_context[key] = context[key] else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/1826060/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2023-11-05T21:02:32.233592Z, end-time: 2023-11-05T21:02:51.423266Z, duration: 19, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v6.2.1 making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'strikethrough', 'fieldlist', 'deflist', 'html_admonition', 'substitution', 'linkify', 'replacements', 'attrs_inline', 'dollarmath', 'colon_fence', 'amsmath', 'html_image', 'smartquotes', 'tasklist'}, disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 72 source files that are out of date updating environment: [new config] 72 added, 0 changed, 0 removed reading sources... 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[rtd-command-info] start-time: 2023-11-05T21:02:51.507744Z, end-time: 2023-11-05T21:03:04.572717Z, duration: 13, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip Running Sphinx v6.2.1 making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'colon_fence', 'html_admonition', 'deflist', 'tasklist', 'substitution', 'smartquotes', 'replacements', 'html_image', 'linkify', 'dollarmath', 'attrs_inline', 'strikethrough', 'amsmath', 'fieldlist'}, disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 72 added, 0 changed, 0 removed reading sources... 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[100%] plotters looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.channelreports.icj_to_csv emod_api.channelreports.plot_icj_means emod_api.channelreports.plot_prop_report emod_api.channelreports.utils emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.service emod_api.demographics.service.grid_construction emod_api.demographics.service.service emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.legacy emod_api.legacy.plotAllCharts emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.plot_spat_means emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.multidim_plotter emod_api.peek_camp emod_api.schema_to_class glossary plotters done writing... done writing additional files... opensearchdone copying images... 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