Read the Docs build information Build id: 181091 Project: tiledb-inc-tiledb-py Version: latest Commit: 10827735273cc716b588687a7a54e375041ac535 Date: 2019-02-06T17:48:18.280849Z State: finished Success: False [rtd-command-info] start-time: 2019-02-06T17:48:48.271209Z, end-time: 2019-02-06T17:48:48.768396Z, duration: 0, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2019-02-06T17:48:49.547949Z, end-time: 2019-02-06T17:48:49.569481Z, duration: 0, exit-code: 0 git checkout --force origin/dev Note: checking out 'origin/dev'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 1082773 Fix build on macOS 10.14 by setting MACOSX_DEPLOYMENT_TARGET [rtd-command-info] start-time: 2019-02-06T17:48:49.637814Z, end-time: 2019-02-06T17:48:49.644906Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2019-02-06T17:48:50.495801Z, end-time: 2019-02-06T17:50:09.580783Z, duration: 79, exit-code: 0 conda env create --quiet --name latest --file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/doc/source/conda-env.yml [rtd-command-info] start-time: 2019-02-06T17:50:09.784319Z, end-time: 2019-02-06T17:51:00.881203Z, duration: 51, exit-code: 0 conda install --yes --quiet --name latest mock pillow sphinx sphinx_rtd_theme Package plan for installation in environment /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest: The following NEW packages will be INSTALLED: alabaster: 0.7.12-py_0 conda-forge asn1crypto: 0.24.0-py35_3 conda-forge babel: 2.6.0-py_1 conda-forge cffi: 1.11.5-py35h5e8e0c9_1 conda-forge chardet: 3.0.4-py35_3 conda-forge cryptography: 2.3.1-py35hdffb7b8_0 conda-forge cryptography-vectors: 2.3.1-py35_0 conda-forge docutils: 0.14-py35_1 conda-forge freetype: 2.9.1-h94bbf69_1005 conda-forge idna: 2.7-py35_2 conda-forge imagesize: 1.1.0-py_0 conda-forge jinja2: 2.10-py_1 conda-forge jpeg: 9c-h14c3975_1001 conda-forge libpng: 1.6.36-h84994c4_1000 conda-forge libtiff: 4.0.10-h648cc4a_1001 conda-forge markupsafe: 1.0-py35h470a237_1 conda-forge mock: 2.0.0-py35_0 conda-forge olefile: 0.46-py_0 conda-forge pbr: 5.1.2-py_0 conda-forge pillow: 5.3.0-py35hc736899_0 conda-forge pycparser: 2.19-py_0 conda-forge pygments: 2.3.1-py_0 conda-forge pyopenssl: 18.0.0-py35_0 conda-forge pysocks: 1.6.8-py35_2 conda-forge pytz: 2018.9-py_0 conda-forge requests: 2.19.1-py35_1 conda-forge snowballstemmer: 1.2.1-py_1 conda-forge sphinx: 1.8.1-py35_0 conda-forge sphinx_rtd_theme: 0.4.2-py_0 conda-forge sphinxcontrib-websupport: 1.1.0-py_1 conda-forge urllib3: 1.23-py35_1 conda-forge [rtd-command-info] start-time: 2019-02-06T17:51:00.940835Z, end-time: 2019-02-06T17:51:08.365526Z, duration: 7, exit-code: 0 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/python -m pip install -U --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip recommonmark readthedocs-sphinx-ext Collecting recommonmark Downloading https://files.pythonhosted.org/packages/9b/3d/92ea48401622510e57b4bdaa74dc9db2fb9e9e892324b48f9c02d716a93a/recommonmark-0.5.0-py2.py3-none-any.whl Collecting readthedocs-sphinx-ext Downloading https://files.pythonhosted.org/packages/a5/19/abebb2ac7554119cc56d77ce03abcb17b200d6cc3b04dce05cd31248f06f/readthedocs_sphinx_ext-0.5.16-py2.py3-none-any.whl Requirement already satisfied, skipping upgrade: sphinx>=1.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from recommonmark) (1.8.1) Collecting commonmark>=0.7.3 (from recommonmark) Downloading https://files.pythonhosted.org/packages/ab/ca/439c88039583a29564a0043186875258e9a4f041fb5c422cd387b8e10175/commonmark-0.8.1-py2.py3-none-any.whl (47kB) Requirement already satisfied, skipping upgrade: docutils>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from recommonmark) (0.14) Requirement already satisfied, skipping upgrade: requests in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from readthedocs-sphinx-ext) (2.19.1) Requirement already satisfied, skipping upgrade: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.11.0) Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (2.10) Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (2.3.1) Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.2.1) Requirement already satisfied, skipping upgrade: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (2.6.0) Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (0.7.12) Requirement already satisfied, skipping upgrade: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.1.0) Requirement already satisfied, skipping upgrade: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (40.4.3) Requirement already satisfied, skipping upgrade: packaging in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (19.0) Requirement already satisfied, skipping upgrade: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from sphinx>=1.3.1->recommonmark) (1.1.0) Collecting future (from commonmark>=0.7.3->recommonmark) Downloading https://files.pythonhosted.org/packages/90/52/e20466b85000a181e1e144fd8305caf2cf475e2f9674e797b222f8105f5f/future-0.17.1.tar.gz (829kB) Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (3.0.4) Requirement already satisfied, skipping upgrade: idna<2.8,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (2.7) Requirement already satisfied, skipping upgrade: urllib3<1.24,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (1.23) Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from requests->readthedocs-sphinx-ext) (2018.8.24) Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from Jinja2>=2.3->sphinx>=1.3.1->recommonmark) (1.0) Requirement already satisfied, skipping upgrade: pytz>=0a in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from babel!=2.0,>=1.3->sphinx>=1.3.1->recommonmark) (2018.9) Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages (from packaging->sphinx>=1.3.1->recommonmark) (2.3.1) Building wheels for collected packages: future Running setup.py bdist_wheel for future: started Running setup.py bdist_wheel for future: finished with status 'done' Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/.cache/pip/wheels/0c/61/d2/d6b7317325828fbb39ee6ad559dbe4664d0896da4721bf379e Successfully built future Installing collected packages: future, commonmark, recommonmark, readthedocs-sphinx-ext Successfully installed commonmark-0.8.1 future-0.17.1 readthedocs-sphinx-ext-0.5.16 recommonmark-0.5.0 [rtd-command-info] start-time: 2019-02-06T17:51:08.428053Z, end-time: 2019-02-06T17:51:18.280437Z, duration: 9, exit-code: 1 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/python setup.py install --force cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by cmake) running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by cmake) cmake: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/bin/../lib/libstdc++.so.6: version `GLIBCXX_3.4.22' not found (required by cmake) Downloading TileDB package from master... Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-master/build... /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/.eggs/setuptools_scm-3.2.0-py3.5.egg/setuptools_scm/git.py:68: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors warnings.warn('"%s" is shallow and may cause errors' % (wd.path,)) Traceback (most recent call last): File "setup.py", line 411, in 'Programming Language :: Python :: 3.6', File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages/setuptools/__init__.py", line 140, in setup return distutils.core.setup(**attrs) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/distutils/core.py", line 148, in setup dist.run_commands() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/distutils/dist.py", line 955, in run_commands self.run_command(cmd) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/distutils/dist.py", line 974, in run_command cmd_obj.run() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages/setuptools/command/install.py", line 67, in run self.do_egg_install() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/site-packages/setuptools/command/install.py", line 109, in do_egg_install self.run_command('bdist_egg') File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/distutils/dist.py", line 974, in run_command cmd_obj.run() File "setup.py", line 285, in run find_or_install_libtiledb(self) File "setup.py", line 182, in find_or_install_libtiledb install_dir = build_libtiledb(src_dir) File "setup.py", line 158, in build_libtiledb subprocess.check_call(cmake_cmd, cwd=libtiledb_build_dir) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/conda/latest/lib/python3.5/subprocess.py", line 271, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest/build/TileDB-master/dist', '-DCMAKE_BUILD_TYPE=Release', '-DTILEDB_TESTS=OFF', '-DTILEDB_HDFS=ON', '-DTILEDB_S3=ON', '..']' returned non-zero exit status 1