Read the Docs build information
Build id: 177327
Project: icb-scanpy-tutorials
Version: latest
Commit: b0b93dbe25245b85989f9aca0880eac8cb4ec78a
Date: 2019-01-24T20:49:16.347574Z
State: finished
Success: True


[rtd-command-info] start-time: 2019-01-24T20:49:16.762081Z, end-time: 2019-01-24T20:49:16.768814Z, duration: 0, exit-code: 0
git remote set-url origin https://github.com/theislab/scanpy-tutorials.git


[rtd-command-info] start-time: 2019-01-24T20:49:16.827166Z, end-time: 2019-01-24T20:49:17.056297Z, duration: 0, exit-code: 0
git fetch --tags --prune --prune-tags --depth 50
From https://github.com/theislab/scanpy-tutorials
   6fa8251..b0b93db  master     -> origin/master

[rtd-command-info] start-time: 2019-01-24T20:49:17.226402Z, end-time: 2019-01-24T20:49:17.239565Z, duration: 0, exit-code: 0
git checkout --force origin/master
Previous HEAD position was 6fa8251 amended requirements
HEAD is now at b0b93db added rtfd yml

[rtd-command-info] start-time: 2019-01-24T20:49:17.299765Z, end-time: 2019-01-24T20:49:17.309108Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2019-01-24T20:49:18.491530Z, end-time: 2019-01-24T20:49:23.012960Z, duration: 4, exit-code: 0
python3.6 -mvirtualenv --no-site-packages --no-download 
Using base prefix '/home/docs/.pyenv/versions/3.6.2'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/bin/python3.6
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/bin/python
Installing setuptools, pip, wheel...done.

[rtd-command-info] start-time: 2019-01-24T20:49:23.075849Z, end-time: 2019-01-24T20:49:25.118137Z, duration: 2, exit-code: 0
python -m pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/.cache/pip pip
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Installing collected packages: pip
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    Uninstalling pip-9.0.3:
      Successfully uninstalled pip-9.0.3
Successfully installed pip-19.0.1

[rtd-command-info] start-time: 2019-01-24T20:49:25.175161Z, end-time: 2019-01-24T20:49:45.680406Z, duration: 20, exit-code: 0
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Successfully installed Jinja2-2.10 MarkupSafe-1.1.0 Pygments-2.2.0 alabaster-0.7.12 babel-2.6.0 certifi-2018.11.29 chardet-3.0.4 commonmark-0.5.4 docutils-0.13.1 idna-2.8 imagesize-1.1.0 mock-1.0.1 packaging-19.0 pillow-2.6.1 pyparsing-2.3.1 pytz-2018.9 readthedocs-sphinx-ext-0.5.16 recommonmark-0.4.0 requests-2.21.0 setuptools-39.2.0 six-1.12.0 snowballstemmer-1.2.1 sphinx-1.7.9 sphinx-rtd-theme-0.4.2 sphinxcontrib-websupport-1.1.0 urllib3-1.24.1

[rtd-command-info] start-time: 2019-01-24T20:49:45.741459Z, end-time: 2019-01-24T20:50:10.455202Z, duration: 24, exit-code: 0
python -m pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/.cache/pip -r requirements.txt
Requirement already satisfied: sphinx>=1.4 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.6/site-packages (from -r requirements.txt (line 1)) (1.7.9)
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Collecting pexpect; sys_platform != "win32" (from ipython>=5.0.0->ipykernel->-r requirements.txt (line 2))
  Using cached https://files.pythonhosted.org/packages/89/e6/b5a1de8b0cc4e07ca1b305a4fcc3f9806025c1b651ea302646341222f88b/pexpect-4.6.0-py2.py3-none-any.whl
Collecting pickleshare (from ipython>=5.0.0->ipykernel->-r requirements.txt (line 2))
  Using cached https://files.pythonhosted.org/packages/9a/41/220f49aaea88bc6fa6cba8d05ecf24676326156c23b991e80b3f2fc24c77/pickleshare-0.7.5-py2.py3-none-any.whl
Collecting jedi>=0.10 (from ipython>=5.0.0->ipykernel->-r requirements.txt (line 2))
  Using cached https://files.pythonhosted.org/packages/c2/bc/54d53f5bc4658380d0eca9055d72be4df45e5bfd91a4bac97da224a92553/jedi-0.13.2-py2.py3-none-any.whl
Collecting backcall (from ipython>=5.0.0->ipykernel->-r requirements.txt (line 2))
  Using cached https://files.pythonhosted.org/packages/84/71/c8ca4f5bb1e08401b916c68003acf0a0655df935d74d93bf3f3364b310e0/backcall-0.1.0.tar.gz
Collecting prompt-toolkit<2.1.0,>=2.0.0 (from ipython>=5.0.0->ipykernel->-r requirements.txt (line 2))
  Using cached https://files.pythonhosted.org/packages/d1/e6/adb3be5576f5d27c6faa33f1e9fea8fe5dbd9351db12148de948507e352c/prompt_toolkit-2.0.7-py3-none-any.whl
Collecting jsonschema!=2.5.0,>=2.4 (from nbformat->nbsphinx==0.3.5->-r requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/77/de/47e35a97b2b05c2fadbec67d44cfcdcd09b8086951b331d82de90d2912da/jsonschema-2.6.0-py2.py3-none-any.whl
Collecting testpath (from nbconvert!=5.4->nbsphinx==0.3.5->-r requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/be/a4/162f9ebb6489421fe46dcca2ae420369edfee4b563c668d93cb4605d12ba/testpath-0.4.2-py2.py3-none-any.whl
Collecting entrypoints>=0.2.2 (from nbconvert!=5.4->nbsphinx==0.3.5->-r requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/ac/c6/44694103f8c221443ee6b0041f69e2740d89a25641e62fb4f2ee568f2f9c/entrypoints-0.3-py2.py3-none-any.whl
Collecting pandocfilters>=1.4.1 (from nbconvert!=5.4->nbsphinx==0.3.5->-r requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/4c/ea/236e2584af67bb6df960832731a6e5325fd4441de001767da328c33368ce/pandocfilters-1.4.2.tar.gz
Collecting mistune>=0.7.4 (from nbconvert!=5.4->nbsphinx==0.3.5->-r requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/09/ec/4b43dae793655b7d8a25f76119624350b4d65eb663459eb9603d7f1f0345/mistune-0.8.4-py2.py3-none-any.whl
Collecting bleach (from nbconvert!=5.4->nbsphinx==0.3.5->-r requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/ab/05/27e1466475e816d3001efb6e0a85a819be17411420494a1e602c36f8299d/bleach-3.1.0-py2.py3-none-any.whl
Collecting kiwisolver>=1.0.1 (from matplotlib->nbclean->-r requirements.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/69/a7/88719d132b18300b4369fbffa741841cfd36d1e637e1990f27929945b538/kiwisolver-1.0.1-cp36-cp36m-manylinux1_x86_64.whl (949kB)
Collecting cycler>=0.10 (from matplotlib->nbclean->-r requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/f7/d2/e07d3ebb2bd7af696440ce7e754c59dd546ffe1bbe732c8ab68b9c834e61/cycler-0.10.0-py2.py3-none-any.whl
Collecting sqlalchemy (from nbgrader->nbclean->-r requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/05/d2/17fb194f4ae83577258ea1d81da3d5d5643f4957fa14fd0261d78d648bf5/SQLAlchemy-1.2.16.tar.gz
Collecting jupyter (from nbgrader->nbclean->-r requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/83/df/0f5dd132200728a86190397e1ea87cd76244e42d39ec5e88efd25b2abd7e/jupyter-1.0.0-py2.py3-none-any.whl
Collecting notebook>=4.2 (from nbgrader->nbclean->-r requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/f8/a6/dbdf0954d073ab2cf5421cad20334d1e4c780da37205c04522c045298f67/notebook-5.7.4-py2.py3-none-any.whl
Collecting alembic (from nbgrader->nbclean->-r requirements.txt (line 4))
Collecting jupyter-console<=5.2.0 (from nbgrader->nbclean->-r requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/77/82/6469cd7fccf7958cbe5dce2e623f1e3c5e27f1bb1ad36d90519bc2d5d370/jupyter_console-5.2.0-py2.py3-none-any.whl
Collecting ptyprocess>=0.5 (from pexpect; sys_platform != "win32"->ipython>=5.0.0->ipykernel->-r requirements.txt (line 2))
  Using cached https://files.pythonhosted.org/packages/d1/29/605c2cc68a9992d18dada28206eeada56ea4bd07a239669da41674648b6f/ptyprocess-0.6.0-py2.py3-none-any.whl
Collecting parso>=0.3.0 (from jedi>=0.10->ipython>=5.0.0->ipykernel->-r requirements.txt (line 2))
  Using cached https://files.pythonhosted.org/packages/49/f6/5108eb2c490c57d7ca3ac013e03e5c50f195aa1749b17a1fe553d63a37c2/parso-0.3.2-py2.py3-none-any.whl
Collecting wcwidth (from prompt-toolkit<2.1.0,>=2.0.0->ipython>=5.0.0->ipykernel->-r requirements.txt (line 2))
  Using cached https://files.pythonhosted.org/packages/7e/9f/526a6947247599b084ee5232e4f9190a38f398d7300d866af3ab571a5bfe/wcwidth-0.1.7-py2.py3-none-any.whl
Collecting webencodings (from bleach->nbconvert!=5.4->nbsphinx==0.3.5->-r requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl
Collecting ipywidgets (from jupyter->nbgrader->nbclean->-r requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/30/9a/a008c7b1183fac9e52066d80a379b3c64eab535bd9d86cdc29a0b766fd82/ipywidgets-7.4.2-py2.py3-none-any.whl
Collecting qtconsole (from jupyter->nbgrader->nbclean->-r requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/e0/7a/8aefbc0ed078dec7951ac9a06dcd1869243ecd7bcbce26fa47bf5e469a8f/qtconsole-4.4.3-py2.py3-none-any.whl
Collecting prometheus-client (from notebook>=4.2->nbgrader->nbclean->-r requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/bc/e1/3cddac03c8992815519c5f50493097f6508fa153d067b494db8ab5e9c4ce/prometheus_client-0.5.0.tar.gz
Collecting Send2Trash (from notebook>=4.2->nbgrader->nbclean->-r requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/49/46/c3dc27481d1cc57b9385aff41c474ceb7714f7935b1247194adae45db714/Send2Trash-1.5.0-py3-none-any.whl
Collecting terminado>=0.8.1 (from notebook>=4.2->nbgrader->nbclean->-r requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/2e/20/a26211a24425923d46e1213b376a6ee60dc30bcdf1b0c345e2c3769deb1c/terminado-0.8.1-py2.py3-none-any.whl
Collecting python-editor>=0.3 (from alembic->nbgrader->nbclean->-r requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/65/1e/adf6e000ea5dc909aa420352d6ba37f16434c8a3c2fa030445411a1ed545/python-editor-1.0.3.tar.gz
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  Using cached https://files.pythonhosted.org/packages/eb/f3/67579bb486517c0d49547f9697e36582cd19dafb5df9e687ed8e22de57fa/Mako-1.0.7.tar.gz
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Building wheels for collected packages: tornado, nbgrader, backcall, pandocfilters, sqlalchemy, prometheus-client, python-editor, Mako
  Building wheel for tornado (setup.py): started
  Building wheel for tornado (setup.py): finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/.cache/pip/wheels/6d/e1/ce/f4ee2fa420cc6b940123c64992b81047816d0a9fad6b879325
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  Building wheel for backcall (setup.py): finished with status 'done'
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  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/.cache/pip/wheels/39/01/56/f1b08a6275acc59e846fa4c1e1b65dbc1919f20157d9e66c20
  Building wheel for sqlalchemy (setup.py): started
  Building wheel for sqlalchemy (setup.py): finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/.cache/pip/wheels/71/b5/67/1b1ae0279de6e79ee0d0a4061cdfa0604908e6052046671480
  Building wheel for prometheus-client (setup.py): started
  Building wheel for prometheus-client (setup.py): finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/.cache/pip/wheels/1a/74/d7/dc59e0bf44fdfd6395c0076129453abf563e4aeca5d72c8574
  Building wheel for python-editor (setup.py): started
  Building wheel for python-editor (setup.py): finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/.cache/pip/wheels/36/e0/98/ba386b125a00ea9dd52e2c16aa2ec0adbbd639b84bfe2e001d
  Building wheel for Mako (setup.py): started
  Building wheel for Mako (setup.py): finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/.cache/pip/wheels/15/35/25/dbcb848832ccb1a4b4ad23f529badfd3bce9bf88017f7ca510
Successfully built tornado nbgrader backcall pandocfilters sqlalchemy prometheus-client python-editor Mako
jupyter-console 5.2.0 has requirement prompt-toolkit<2.0.0,>=1.0.0, but you'll have prompt-toolkit 2.0.7 which is incompatible.
nbgrader 0.5.5 has requirement ipython<=6.2.1, but you'll have ipython 7.2.0 which is incompatible.
Installing collected packages: tornado, decorator, ipython-genutils, traitlets, pyzmq, python-dateutil, jupyter-core, jupyter-client, ptyprocess, pexpect, pickleshare, parso, jedi, backcall, wcwidth, prompt-toolkit, ipython, ipykernel, jsonschema, nbformat, testpath, entrypoints, pandocfilters, mistune, webencodings, bleach, nbconvert, nbsphinx, numpy, tqdm, kiwisolver, cycler, matplotlib, sqlalchemy, prometheus-client, Send2Trash, terminado, notebook, widgetsnbextension, ipywidgets, jupyter-console, qtconsole, jupyter, python-editor, Mako, alembic, nbgrader, nbclean
Successfully installed Mako-1.0.7 Send2Trash-1.5.0 alembic-1.0.6 backcall-0.1.0 bleach-3.1.0 cycler-0.10.0 decorator-4.3.2 entrypoints-0.3 ipykernel-5.1.0 ipython-7.2.0 ipython-genutils-0.2.0 ipywidgets-7.4.2 jedi-0.13.2 jsonschema-2.6.0 jupyter-1.0.0 jupyter-client-5.2.4 jupyter-console-5.2.0 jupyter-core-4.4.0 kiwisolver-1.0.1 matplotlib-3.0.2 mistune-0.8.4 nbclean-0.3.2 nbconvert-5.3.1 nbformat-4.4.0 nbgrader-0.5.5 nbsphinx-0.3.5 notebook-5.7.4 numpy-1.16.0 pandocfilters-1.4.2 parso-0.3.2 pexpect-4.6.0 pickleshare-0.7.5 prometheus-client-0.5.0 prompt-toolkit-2.0.7 ptyprocess-0.6.0 python-dateutil-2.7.5 python-editor-1.0.3 pyzmq-17.1.2 qtconsole-4.4.3 sqlalchemy-1.2.16 terminado-0.8.1 testpath-0.4.2 tornado-5.1.1 tqdm-4.29.1 traitlets-4.3.2 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.4.2

[rtd-command-info] start-time: 2019-01-24T20:50:10.932241Z, end-time: 2019-01-24T20:50:10.995986Z, duration: 0, exit-code: 0
cat conf.py
from datetime import datetime
project = 'Scanpy'
author = 'Scanpy authors'
copyright = f'{datetime.now():%Y}, {author}.'

version = ''
release = version

extensions = [
    'nbsphinx',
]

templates_path = ['_templates']
source_suffix = '.rst'
master_doc = 'index'
language = None
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store', '**.ipynb_checkpoints']
pygments_style = 'sphinx'

# -- Options for HTML output ----------------------------------------------

html_theme = 'sphinx_rtd_theme'
html_theme_options = dict(
    navigation_depth=2,
)
html_context = dict(
    display_github=True,      # Integrate GitHub
    github_user='theislab',   # Username
    github_repo='scanpy-tutorials',     # Repo name
    github_version='master',  # Version
    conf_py_path='/',    # Path in the checkout to the docs root
)
html_static_path = ['_static']

def setup(app):
    app.add_stylesheet('css/custom.css')

# -- Strip output ----------------------------------------------

import nbclean, glob

for filename in glob.glob('**/*.ipynb', recursive=True):
    ntbk = nbclean.NotebookCleaner(filename)
    ntbk.clear('stderr')
    ntbk.save(filename)




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    else:
        SUFFIX = source_suffix[0]
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://media.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://media.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ],
    'downloads': [ 
    ("htmlzip", "//readthedocs.com/projects/icb-scanpy-tutorials/downloads/htmlzip/latest/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'icb-scanpy-tutorials',
    'name': u'scanpy-tutorials',
    'rtd_language': u'en',
    'programming_language': u'py',
    'canonical_url': 'https://icb-scanpy-tutorials.readthedocs-hosted.com/en/latest/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'theislab',
    'github_repo': 'scanpy-tutorials',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': 'b0b93dbe',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

[rtd-command-info] start-time: 2019-01-24T20:50:11.057962Z, end-time: 2019-01-24T20:50:18.354202Z, duration: 7, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.7.9
loading translations [en]... done
making output directory...
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 5 source files that are out of date
updating environment: 5 added, 0 changed, 0 removed
reading sources... [ 20%] README
reading sources... [ 40%] index
reading sources... [ 60%] paga-paul15
reading sources... [ 80%] pbmc3k
reading sources... [100%] visualizing-marker-genes

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 20%] README
writing output... [ 40%] index
writing output... [ 60%] paga-paul15
writing output... [ 80%] pbmc3k
writing output... [100%] visualizing-marker-genes

/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/checkouts/latest/pbmc3k.ipynb: WARNING: using "math" markup without a Sphinx math extension active, please use one of the math extensions described at http://sphinx-doc.org/en/master/ext/math.html
generating indices... genindex
writing additional pages... search
copying images... [  1%] _build/doctrees-readthedocs/nbsphinx/paga-paul15_13_0.png
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copying images... [ 14%] _build/doctrees-readthedocs/nbsphinx/paga-paul15_45_1.png
copying images... [ 16%] _build/doctrees-readthedocs/nbsphinx/paga-paul15_54_0.png
copying images... [ 18%] _build/doctrees-readthedocs/nbsphinx/paga-paul15_60_0.png
copying images... [ 20%] _build/doctrees-readthedocs/nbsphinx/pbmc3k_12_0.png
copying images... [ 22%] _build/doctrees-readthedocs/nbsphinx/pbmc3k_19_0.png
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build succeeded, 1 warnings.

The HTML pages are in _build/html.

[rtd-command-info] start-time: 2019-01-24T20:50:18.471305Z, end-time: 2019-01-24T20:50:25.092285Z, duration: 6, exit-code: 0
python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia
Running Sphinx v1.7.9
loading translations [en]... done
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reading sources... [ 60%] paga-paul15
reading sources... [ 80%] pbmc3k
reading sources... [100%] visualizing-marker-genes

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assembling single document... pbmc3k paga-paul15 visualizing-marker-genes 
writing... /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/checkouts/latest/index.rst: WARNING: using "math" markup without a Sphinx math extension active, please use one of the math extensions described at http://sphinx-doc.org/en/master/ext/math.html
done
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copying static files... done
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dumping object inventory... done
build succeeded, 1 warnings.

The HTML page is in _build/localmedia.