Read the Docs build information Build id: 1767359 Project: institute-for-disease-modeling-emodpy-malaria Version: latest Commit: 025942cac6f2d07f8669a649a967299ddc413e4a Date: 2023-10-06T22:11:34.077897Z State: finished Success: True [rtd-command-info] start-time: 2023-10-06T22:13:40.070980Z, end-time: 2023-10-06T22:13:42.669695Z, duration: 2, exit-code: 0 git clone --depth 1 git@github.com:InstituteforDiseaseModeling/emodpy-malaria.git . Cloning into '.'... Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. [rtd-command-info] start-time: 2023-10-06T22:13:43.096376Z, end-time: 2023-10-06T22:13:45.364964Z, duration: 2, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 refs/heads/main:refs/remotes/origin/main Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. From github.com:InstituteforDiseaseModeling/emodpy-malaria * [new tag] v3.1.12 -> v3.1.12 * [new tag] v3.1.32Release -> v3.1.32Release [rtd-command-info] start-time: 2023-10-06T22:13:45.899246Z, end-time: 2023-10-06T22:13:46.241195Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 025942c Bump version: 3.1.35 → 3.1.36 [rtd-command-info] start-time: 2023-10-06T22:13:47.097490Z, end-time: 2023-10-06T22:13:47.155824Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-10-06T22:13:49.224500Z, end-time: 2023-10-06T22:13:49.282379Z, duration: 0, exit-code: 0 cat .readthedocs.yml # .readthedocs.yml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py fail_on_warning: true # Build documentation with MkDocs #mkdocs: # configuration: mkdocs.yml # Optionally build your docs in additional formats such as PDF formats: - htmlzip - pdf # Optionally set the version of Python and requirements required to build your docs python: version: 3.8 install: - requirements: requirements.txt - requirements: docs/requirements.txt - method: setuptools path: . # Optionally rank topics in search results, between -10 (lower) and 10 (higher). # 0 is normal rank, not no rank # search: # ranking: [rtd-command-info] start-time: 2023-10-06T22:13:52.925889Z, end-time: 2023-10-06T22:14:16.665277Z, duration: 23, exit-code: 0 python3.8 -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH Using base prefix '/home/docs/.pyenv/versions/3.8.6' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python3.8 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python Installing setuptools, pip, wheel... done. 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urllib3, tzdata, tqdm, threadpoolctl, tabulate, soupsieve, six, pyyaml, pyproj, pyparsing, pycparser, pluggy, pillow, numpy, natsort, more-itertools, lz4, kiwisolver, joblib, jeepney, importlib-resources, humanfriendly, graphviz, geographiclib, future, fonttools, filelock, diskcache, cycler, click, backoff, astor, shapely, scipy, requests, python-dateutil, packaging, jaraco.classes, contourpy, coloredlogs, cffi, beautifulsoup4, astunparse, yarg, scikit-learn, pygit2, pyCOMPS, pandas, matplotlib, cryptography, bs4, SecretStorage, pipreqs, emod-api, keyring, idmtools, idmtools-platform-comps, idmtools-models, emodpy Attempting uninstall: urllib3 Found existing installation: urllib3 2.0.6 Uninstalling urllib3-2.0.6: Successfully uninstalled urllib3-2.0.6 Attempting uninstall: requests Found existing installation: requests 2.31.0 Uninstalling requests-2.31.0: Successfully uninstalled requests-2.31.0 Attempting uninstall: packaging Found existing installation: packaging 23.2 Uninstalling 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(line 6)) (3.1.1) Installing collected packages: typing-extensions, sphinxext.remoteliteralinclude, readthedocs-sphinx-search, pockets, mdurl, docutils, sphinxcontrib-napoleon, sphinx, plantweb, markdown-it-py, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton, mdit-py-plugins, myst-parser Attempting uninstall: docutils Found existing installation: docutils 0.20.1 Uninstalling docutils-0.20.1: Successfully uninstalled docutils-0.20.1 Attempting uninstall: sphinx Found existing installation: Sphinx 7.1.2 Uninstalling Sphinx-7.1.2: Successfully uninstalled Sphinx-7.1.2 Successfully installed docutils-0.16 markdown-it-py-2.2.0 mdit-py-plugins-0.3.5 mdurl-0.1.2 myst-parser-0.18.1 plantweb-1.2.1 pockets-0.9.1 readthedocs-sphinx-search-0.3.1 sphinx-4.4.0 sphinx-copybutton-0.3.3 sphinx-rtd-theme-0.5.2 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxext.remoteliteralinclude-0.4.0 typing-extensions-4.8.0 [rtd-command-info] start-time: 2023-10-06T22:15:26.498341Z, end-time: 2023-10-06T22:15:27.769029Z, duration: 1, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emodpy_malaria.egg-info writing emodpy_malaria.egg-info/PKG-INFO writing dependency_links to emodpy_malaria.egg-info/dependency_links.txt writing requirements to emodpy_malaria.egg-info/requires.txt writing top-level names to emodpy_malaria.egg-info/top_level.txt writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emodpy_malaria copying emodpy_malaria/malaria_config.py -> build/lib/emodpy_malaria copying emodpy_malaria/malaria_vector_species_params.py -> build/lib/emodpy_malaria copying emodpy_malaria/__init__.py -> build/lib/emodpy_malaria copying emodpy_malaria/vector_config.py -> build/lib/emodpy_malaria creating build/lib/tests copying tests/create_auth_token_args.py -> build/lib/tests copying tests/run_all_sft_tests.py -> build/lib/tests copying tests/__init__.py -> build/lib/tests copying tests/add_itn.py -> build/lib/tests creating build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/__init__.py -> build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/builtin.py -> build/lib/emodpy_malaria/reporters creating build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/MalariaDemographics.py -> build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/__init__.py -> build/lib/emodpy_malaria/demographics creating build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_utils.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_set.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_variable.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/data_sources.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_request.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_metadata.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/__init__.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_data.py -> build/lib/emodpy_malaria/weather creating build/lib/emodpy_malaria/vector_migration copying emodpy_malaria/vector_migration/vector_migration.py -> build/lib/emodpy_malaria/vector_migration copying emodpy_malaria/vector_migration/__init__.py -> build/lib/emodpy_malaria/vector_migration creating build/lib/emodpy_malaria/serialization copying emodpy_malaria/serialization/zero_infections.py -> build/lib/emodpy_malaria/serialization copying emodpy_malaria/serialization/replace_genomes.py -> build/lib/emodpy_malaria/serialization copying emodpy_malaria/serialization/__init__.py -> build/lib/emodpy_malaria/serialization copying emodpy_malaria/serialization/replace_genomes_get_next_barcode.py -> build/lib/emodpy_malaria/serialization creating build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/bednet.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/mosquitorelease.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outdoorrestkill.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outbreak.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/diag_survey.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/usage_dependent_bednet.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/malaria_challenge.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/common.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/spacespraying.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/vaccine.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/community_health_worker.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/larvicide.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/sugartrap.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/__init__.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/adherentdrug.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/treatment_seeking.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/scale_larval_habitats.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/ivermectin.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/inputeir.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/irs.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug_campaign.py -> build/lib/emodpy_malaria/interventions creating build/lib/tests/unittests copying tests/unittests/schema_path_file.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions_as_files.py -> build/lib/tests/unittests copying tests/unittests/test_demog.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_reporters.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions.py -> build/lib/tests/unittests copying tests/unittests/test_campaign_common.py -> build/lib/tests/unittests copying tests/unittests/test_import.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_config.py -> build/lib/tests/unittests copying tests/unittests/get_unittest_coverage.py -> build/lib/tests/unittests copying tests/unittests/manifest.py -> build/lib/tests/unittests copying tests/unittests/test_treatment_seeking.py -> build/lib/tests/unittests creating build/lib/tests/unittests/weather copying tests/unittests/weather/test_weather_scenarios.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_weather_request.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_weather_data.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_e2e_comps.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/__init__.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_weather_set.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_e2e.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_weather_metadata.py -> build/lib/tests/unittests/weather copying emodpy_malaria/malaria_drug_params.csv -> build/lib/emodpy_malaria creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/builtin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters creating build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/MalariaDemographics.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics creating build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_utils.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_set.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_variable.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/data_sources.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_request.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_metadata.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_data.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/malaria_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/vector_migration copying build/lib/emodpy_malaria/vector_migration/vector_migration.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/vector_migration copying build/lib/emodpy_malaria/vector_migration/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/vector_migration creating build/bdist.linux-x86_64/egg/emodpy_malaria/serialization copying build/lib/emodpy_malaria/serialization/zero_infections.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/serialization copying build/lib/emodpy_malaria/serialization/replace_genomes.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/serialization copying build/lib/emodpy_malaria/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/serialization copying build/lib/emodpy_malaria/serialization/replace_genomes_get_next_barcode.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/serialization copying build/lib/emodpy_malaria/malaria_vector_species_params.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/mosquitorelease.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outdoorrestkill.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/diag_survey.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/usage_dependent_bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/malaria_challenge.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/common.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/spacespraying.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/vaccine.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/community_health_worker.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/larvicide.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/sugartrap.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/adherentdrug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/treatment_seeking.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/scale_larval_habitats.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/ivermectin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/inputeir.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/irs.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug_campaign.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_drug_params.csv -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/vector_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/tests copying build/lib/tests/create_auth_token_args.py -> build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/schema_path_file.py -> build/bdist.linux-x86_64/egg/tests/unittests creating build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_weather_scenarios.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_weather_request.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_weather_data.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_e2e_comps.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_weather_set.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_e2e.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_weather_metadata.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/test_malaria_interventions_as_files.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demog.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_reporters.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_campaign_common.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_import.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_config.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/get_unittest_coverage.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/manifest.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_treatment_seeking.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/run_all_sft_tests.py -> build/bdist.linux-x86_64/egg/tests copying build/lib/tests/__init__.py -> build/bdist.linux-x86_64/egg/tests copying build/lib/tests/add_itn.py -> build/bdist.linux-x86_64/egg/tests byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/builtin.py to builtin.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/MalariaDemographics.py to MalariaDemographics.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_utils.py to weather_utils.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_set.py to weather_set.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_variable.py to weather_variable.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/data_sources.py to data_sources.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_request.py to weather_request.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_metadata.py to weather_metadata.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_data.py to weather_data.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_config.py to malaria_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/vector_migration/vector_migration.py to vector_migration.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/vector_migration/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/serialization/zero_infections.py to zero_infections.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/serialization/replace_genomes.py to replace_genomes.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/serialization/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/serialization/replace_genomes_get_next_barcode.py to replace_genomes_get_next_barcode.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_vector_species_params.py to malaria_vector_species_params.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/bednet.py to bednet.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/mosquitorelease.py to mosquitorelease.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug.py to drug.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outdoorrestkill.py to outdoorrestkill.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outbreak.py to outbreak.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/diag_survey.py to diag_survey.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/usage_dependent_bednet.py to usage_dependent_bednet.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/malaria_challenge.py to malaria_challenge.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/common.py to common.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/spacespraying.py to spacespraying.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/vaccine.py to vaccine.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/community_health_worker.py to community_health_worker.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/larvicide.py to larvicide.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/sugartrap.py to sugartrap.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/adherentdrug.py to adherentdrug.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/treatment_seeking.py to treatment_seeking.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/scale_larval_habitats.py to scale_larval_habitats.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/ivermectin.py to ivermectin.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/inputeir.py to inputeir.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/irs.py to irs.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug_campaign.py to drug_campaign.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/vector_config.py to vector_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/create_auth_token_args.py to create_auth_token_args.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/schema_path_file.py to schema_path_file.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_scenarios.py to test_weather_scenarios.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_request.py to test_weather_request.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_data.py to test_weather_data.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_e2e_comps.py to test_e2e_comps.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_set.py to test_weather_set.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_e2e.py to test_e2e.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_metadata.py to test_weather_metadata.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions_as_files.py to test_malaria_interventions_as_files.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demog.py to test_demog.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_reporters.py to test_malaria_reporters.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions.py to test_malaria_interventions.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_campaign_common.py to test_campaign_common.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_import.py to test_import.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_config.py to test_malaria_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_unittest_coverage.py to get_unittest_coverage.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/manifest.py to manifest.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_treatment_seeking.py to test_treatment_seeking.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/run_all_sft_tests.py to run_all_sft_tests.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/add_itn.py to add_itn.cpython-38.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/setuptools/_distutils/cmd.py:66: EasyInstallDeprecationWarning: easy_install command is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` and ``easy_install``. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://github.com/pypa/setuptools/issues/917 for details. ******************************************************************************** !! self.initialize_options() zip_safe flag not set; analyzing archive contents... emodpy_malaria.__pycache__.malaria_config.cpython-38: module references __file__ tests.__pycache__.run_all_sft_tests.cpython-38: module references __file__ tests.unittests.__pycache__.manifest.cpython-38: module references __file__ tests.unittests.__pycache__.schema_path_file.cpython-38: module references __file__ tests.unittests.__pycache__.test_campaign_common.cpython-38: module references __file__ tests.unittests.__pycache__.test_demog.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_config.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_interventions.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_reporters.cpython-38: module references __file__ tests.unittests.__pycache__.test_treatment_seeking.cpython-38: module references __file__ tests.unittests.weather.__pycache__.__init__.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_e2e.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_e2e_comps.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_weather_data.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_weather_metadata.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_weather_request.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_weather_scenarios.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_weather_set.cpython-38: module references __file__ creating dist creating 'dist/emodpy_malaria-3.1.36-py3.8.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emodpy_malaria-3.1.36-py3.8.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/emodpy_malaria-3.1.36-py3.8.egg Extracting emodpy_malaria-3.1.36-py3.8.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Adding emodpy-malaria 3.1.36 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/emodpy_malaria-3.1.36-py3.8.egg Processing dependencies for emodpy-malaria==3.1.36 Searching for requests==2.29.0 Best match: requests 2.29.0 Adding requests 2.29.0 to easy-install.pth file detected new path './emodpy_malaria-3.1.36-py3.8.egg' Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for emod-malaria==0.0.54 Best match: emod-malaria 0.0.54 Adding emod-malaria 0.0.54 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for emodpy==1.21.1 Best match: emodpy 1.21.1 Adding emodpy 1.21.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for certifi==2023.7.22 Best match: certifi 2023.7.22 Adding certifi 2023.7.22 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for urllib3==1.26.17 Best match: urllib3 1.26.17 Adding urllib3 1.26.17 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idna==3.4 Best match: idna 3.4 Adding idna 3.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for charset-normalizer==3.3.0 Best match: charset-normalizer 3.3.0 Adding charset-normalizer 3.3.0 to easy-install.pth file Installing normalizer script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyCOMPS==2.10.0 Best match: pyCOMPS 2.10.0 Adding pyCOMPS 2.10.0 to easy-install.pth file Installing comps-util script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for keyring==24.2.0 Best match: keyring 24.2.0 Adding keyring 24.2.0 to easy-install.pth file Installing keyring script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for bs4==0.0.1 Best match: bs4 0.0.1 Adding bs4 0.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for astunparse==1.6.3 Best match: astunparse 1.6.3 Adding astunparse 1.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for astor==0.8.1 Best match: astor 0.8.1 Adding astor 0.8.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for matplotlib==3.7.3 Best match: matplotlib 3.7.3 Adding matplotlib 3.7.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for emod-api==1.30.1 Best match: emod-api 1.30.1 Adding emod-api 1.30.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools-models==1.7.8 Best match: idmtools-models 1.7.8 Adding idmtools-models 1.7.8 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools-platform-comps==1.7.8 Best match: idmtools-platform-comps 1.7.8 Adding idmtools-platform-comps 1.7.8 to easy-install.pth file Installing comps-cli script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools==1.7.8 Best match: idmtools 1.7.8 Adding idmtools 1.7.8 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for click==7.1.2 Best match: click 7.1.2 Adding click 7.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for xdg==6.0.0 Best match: xdg 6.0.0 Adding xdg 6.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for future==0.18.3 Best match: future 0.18.3 Adding future 0.18.3 to easy-install.pth file Installing futurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pasteurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pytz==2023.3.post1 Best match: pytz 2023.3.post1 Adding pytz 2023.3.post1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for jeepney==0.8.0 Best match: jeepney 0.8.0 Adding jeepney 0.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for SecretStorage==3.3.3 Best match: SecretStorage 3.3.3 Adding SecretStorage 3.3.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for importlib-resources==6.1.0 Best match: importlib-resources 6.1.0 Adding importlib-resources 6.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for importlib-metadata==6.8.0 Best match: importlib-metadata 6.8.0 Adding importlib-metadata 6.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for jaraco.classes==3.3.0 Best match: jaraco.classes 3.3.0 Adding jaraco.classes 3.3.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for beautifulsoup4==4.12.2 Best match: beautifulsoup4 4.12.2 Adding beautifulsoup4 4.12.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for wheel==0.41.2 Best match: wheel 0.41.2 Adding wheel 0.41.2 to easy-install.pth file Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 Adding python-dateutil 2.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyparsing==3.1.1 Best match: pyparsing 3.1.1 Adding pyparsing 3.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for Pillow==10.0.1 Best match: Pillow 10.0.1 Adding Pillow 10.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for packaging==21.3 Best match: packaging 21.3 Adding packaging 21.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for numpy==1.24.4 Best match: numpy 1.24.4 Adding numpy 1.24.4 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3.8 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for kiwisolver==1.4.5 Best match: kiwisolver 1.4.5 Adding kiwisolver 1.4.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for fonttools==4.43.1 Best match: fonttools 4.43.1 Adding fonttools 4.43.1 to easy-install.pth file Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cycler==0.12.0 Best match: cycler 0.12.0 Adding cycler 0.12.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for contourpy==1.1.1 Best match: contourpy 1.1.1 Adding contourpy 1.1.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for parse==1.19.1 Best match: parse 1.19.1 Adding parse 1.19.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for graphviz==0.20.1 Best match: graphviz 0.20.1 Adding graphviz 0.20.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for lz4==4.3.2 Best match: lz4 4.3.2 Adding lz4 4.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for scikit-learn==1.3.1 Best match: scikit-learn 1.3.1 Adding scikit-learn 1.3.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for geographiclib==2.0 Best match: geographiclib 2.0 Adding geographiclib 2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyproj==3.5.0 Best match: pyproj 3.5.0 Adding pyproj 3.5.0 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for shapely==2.0.1 Best match: shapely 2.0.1 Adding shapely 2.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for scipy==1.10.1 Best match: scipy 1.10.1 Adding scipy 1.10.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pandas==2.0.3 Best match: pandas 2.0.3 Adding pandas 2.0.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for PyYAML==6.0.1 Best match: PyYAML 6.0.1 Adding PyYAML 6.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for Jinja2==3.1.2 Best match: Jinja2 3.1.2 Adding Jinja2 3.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for natsort==8.2.0 Best match: natsort 8.2.0 Adding natsort 8.2.0 to easy-install.pth file Installing natsort script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for tqdm==4.66.1 Best match: tqdm 4.66.1 Adding tqdm 4.66.1 to easy-install.pth file Installing tqdm script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pygit2==1.10.1 Best match: pygit2 1.10.1 Adding pygit2 1.10.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for tabulate==0.9.0 Best match: tabulate 0.9.0 Adding tabulate 0.9.0 to easy-install.pth file Installing tabulate script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pluggy==1.0.0 Best match: pluggy 1.0.0 Adding pluggy 1.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pipreqs==0.4.13 Best match: pipreqs 0.4.13 Adding pipreqs 0.4.13 to easy-install.pth file Installing pipreqs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for more-itertools==9.0.0 Best match: more-itertools 9.0.0 Adding more-itertools 9.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for filelock==3.12.4 Best match: filelock 3.12.4 Adding filelock 3.12.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for diskcache==5.4.0 Best match: diskcache 5.4.0 Adding diskcache 5.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for coloredlogs==15.0.1 Best match: coloredlogs 15.0.1 Adding coloredlogs 15.0.1 to easy-install.pth file Installing coloredlogs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for backoff==2.2.1 Best match: backoff 2.2.1 Adding backoff 2.2.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cryptography==41.0.4 Best match: cryptography 41.0.4 Adding cryptography 41.0.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for zipp==3.17.0 Best match: zipp 3.17.0 Adding zipp 3.17.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for soupsieve==2.5 Best match: soupsieve 2.5 Adding soupsieve 2.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for threadpoolctl==3.2.0 Best match: threadpoolctl 3.2.0 Adding threadpoolctl 3.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for joblib==1.3.2 Best match: joblib 1.3.2 Adding joblib 1.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for tzdata==2023.3 Best match: tzdata 2023.3 Adding tzdata 2023.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for MarkupSafe==2.1.3 Best match: MarkupSafe 2.1.3 Adding MarkupSafe 2.1.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cffi==1.16.0 Best match: cffi 1.16.0 Adding cffi 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for yarg==0.1.9 Best match: yarg 0.1.9 Adding yarg 0.1.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for docopt==0.6.2 Best match: docopt 0.6.2 Adding docopt 0.6.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for humanfriendly==10.0 Best match: humanfriendly 10.0 Adding humanfriendly 10.0 to easy-install.pth file Installing humanfriendly script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pycparser==2.21 Best match: pycparser 2.21 Adding pycparser 2.21 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Finished processing dependencies for emodpy-malaria==3.1.36 [rtd-command-info] start-time: 2023-10-06T22:15:37.651500Z, end-time: 2023-10-06T22:15:37.704073Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime from urllib.request import urlretrieve if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "emodpy-malaria" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ tags.add('emodpymalaria') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude', 'myst_parser', 'sphinx_search.extension' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = [] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emodpy-malaria' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = 'en' # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # -- RTD Sphinx search for searching across the entire domain ------------- if os.environ.get('READTHEDOCS') == 'True': search_project_parent = "institute-for-disease-modeling-idm" search_project = os.environ["READTHEDOCS_PROJECT"] search_version = os.environ["READTHEDOCS_VERSION"] rtd_sphinx_search_default_filter = f"subprojects:{search_project_parent}/{search_version}" rtd_sphinx_search_filters = { "Search this project": f"project:{search_project}/{search_version}", "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}", } # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'emodpy-malaria' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emodpy-malaria-docs.tex', u'emodpy-malaria', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', author, 'Institute for Disease Modeling', 'How to use emodpy for malaria simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emod_api': ('https://docs.idmod.org/projects/emod-api/en/latest/', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'emod-malaria': ('https://docs.idmod.org/projects/emod-malaria/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Define this variable in case it's not defined by the user. # It defaults to `alabaster` which is the default from Sphinx. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_theme html_theme = globals().get('html_theme', 'alabaster') #Add project information to the template context. context = { 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("v3.1.12", "/en/v3.1.12/"), ("3.1.1", "/en/3.1.1/"), ("2.4.3", "/en/2.4.3/"), ("2.3.6", "/en/2.3.6/"), ("v2.3.1", "/en/v2.3.1/"), ("2.2.1", "/en/2.2.1/"), ("v2.1.1", "/en/v2.1.1/"), ("v2.0.2", "/en/v2.0.2/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.1.19", "/en/v1.1.19/"), ("v1.1.0", "/en/v1.1.0/"), ("v1.0.10", "/en/v1.0.10/"), ("v1.0.9", "/en/v1.0.9/"), ("v1.0.2", "/en/v1.0.2/"), ("v3.1.32release", "/en/v3.1.32release/"), ("v3.0.1release", "/en/v3.0.1release/"), ("v.2.2.0", "/en/v.2.2.0/"), ("2.3.6release", "/en/2.3.6release/"), ("v0.0.61", "/en/v0.0.61/"), ("v0.0.50", "/en/v0.0.50/"), ("0.0.50", "/en/0.0.50/"), ("v0.0.48", "/en/v0.0.48/"), ("v0.0.45", "/en/v0.0.45/"), ("v0.0.44", "/en/v0.0.44/"), ("v0.0.29", "/en/v0.0.29/"), ("v0.0.18", "/en/v0.0.18/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emodpy-malaria', 'name': u'emodpy-malaria', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': '', 'analytics_code': 'G-SVDSQH04EM', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emodpy-malaria', 'github_version': 'main', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'main', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'main', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'G-SVDSQH04EM', 'global_analytics_code': 'UA-17997319-2', 'commit': '025942ca', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): for key in context: if key not in html_context: html_context[key] = context[key] else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emodpy-malaria/builds/1767359/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2023-10-06T22:15:38.230718Z, end-time: 2023-10-06T22:15:53.149103Z, duration: 14, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... myst v0.18.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=[], disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area') building [mo]: targets for 0 po files that are out of date building [html]: targets for 49 source files that are out of date updating environment: [new config] 49 added, 0 changed, 0 removed reading sources... [ 2%] emodpy_malaria reading sources... [ 4%] emodpy_malaria.demographics reading sources... [ 6%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 8%] emodpy_malaria.interventions reading sources... [ 10%] emodpy_malaria.interventions.adherentdrug reading sources... [ 12%] emodpy_malaria.interventions.bednet reading sources... [ 14%] emodpy_malaria.interventions.common reading sources... [ 16%] emodpy_malaria.interventions.community_health_worker reading sources... [ 18%] emodpy_malaria.interventions.diag_survey reading sources... [ 20%] emodpy_malaria.interventions.drug reading sources... [ 22%] emodpy_malaria.interventions.drug_campaign reading sources... [ 24%] emodpy_malaria.interventions.inputeir reading sources... [ 26%] emodpy_malaria.interventions.irs reading sources... [ 28%] emodpy_malaria.interventions.ivermectin reading sources... [ 30%] emodpy_malaria.interventions.larvicide reading sources... [ 32%] emodpy_malaria.interventions.malaria_challenge reading sources... [ 34%] emodpy_malaria.interventions.mosquitorelease reading sources... [ 36%] emodpy_malaria.interventions.outbreak reading sources... [ 38%] emodpy_malaria.interventions.outdoorrestkill reading sources... [ 40%] emodpy_malaria.interventions.scale_larval_habitats reading sources... [ 42%] emodpy_malaria.interventions.spacespraying reading sources... [ 44%] emodpy_malaria.interventions.sugartrap reading sources... [ 46%] emodpy_malaria.interventions.treatment_seeking reading sources... [ 48%] emodpy_malaria.interventions.usage_dependent_bednet reading sources... [ 51%] emodpy_malaria.interventions.vaccine reading sources... [ 53%] emodpy_malaria.malaria_config reading sources... [ 55%] emodpy_malaria.malaria_vector_species_params reading sources... [ 57%] emodpy_malaria.reporters reading sources... [ 59%] emodpy_malaria.reporters.builtin /!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.7.8/configuration.html for details on how to configure idmtools. reading sources... [ 61%] emodpy_malaria.serialization reading sources... [ 63%] emodpy_malaria.serialization.replace_genomes reading sources... [ 65%] emodpy_malaria.serialization.replace_genomes_get_next_barcode reading sources... [ 67%] emodpy_malaria.serialization.zero_infections reading sources... [ 69%] emodpy_malaria.vector_config reading sources... [ 71%] emodpy_malaria.vector_migration reading sources... [ 73%] emodpy_malaria.vector_migration.vector_migration reading sources... [ 75%] emodpy_malaria.weather reading sources... [ 77%] emodpy_malaria.weather.data_sources reading sources... [ 79%] emodpy_malaria.weather.weather_data reading sources... [ 81%] emodpy_malaria.weather.weather_metadata reading sources... [ 83%] emodpy_malaria.weather.weather_request reading sources... [ 85%] emodpy_malaria.weather.weather_set reading sources... [ 87%] emodpy_malaria.weather.weather_utils reading sources... [ 89%] emodpy_malaria.weather.weather_variable reading sources... [ 91%] faq reading sources... [ 93%] index reading sources... [ 95%] installation reading sources... [ 97%] installation-basic reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 2%] emodpy_malaria writing output... [ 4%] emodpy_malaria.demographics writing output... [ 6%] emodpy_malaria.demographics.MalariaDemographics writing output... [ 8%] emodpy_malaria.interventions writing output... [ 10%] emodpy_malaria.interventions.adherentdrug writing output... [ 12%] emodpy_malaria.interventions.bednet writing output... [ 14%] emodpy_malaria.interventions.common writing output... [ 16%] emodpy_malaria.interventions.community_health_worker writing output... [ 18%] emodpy_malaria.interventions.diag_survey writing output... [ 20%] emodpy_malaria.interventions.drug writing output... [ 22%] emodpy_malaria.interventions.drug_campaign writing output... [ 24%] emodpy_malaria.interventions.inputeir writing output... [ 26%] emodpy_malaria.interventions.irs writing output... [ 28%] emodpy_malaria.interventions.ivermectin writing output... [ 30%] emodpy_malaria.interventions.larvicide writing output... [ 32%] emodpy_malaria.interventions.malaria_challenge writing output... [ 34%] emodpy_malaria.interventions.mosquitorelease writing output... [ 36%] emodpy_malaria.interventions.outbreak writing output... [ 38%] emodpy_malaria.interventions.outdoorrestkill writing output... [ 40%] emodpy_malaria.interventions.scale_larval_habitats writing output... [ 42%] emodpy_malaria.interventions.spacespraying writing output... [ 44%] emodpy_malaria.interventions.sugartrap writing output... [ 46%] emodpy_malaria.interventions.treatment_seeking writing output... [ 48%] emodpy_malaria.interventions.usage_dependent_bednet writing output... [ 51%] emodpy_malaria.interventions.vaccine writing output... [ 53%] emodpy_malaria.malaria_config writing output... [ 55%] emodpy_malaria.malaria_vector_species_params writing output... [ 57%] emodpy_malaria.reporters writing output... [ 59%] emodpy_malaria.reporters.builtin writing output... [ 61%] emodpy_malaria.serialization writing output... [ 63%] emodpy_malaria.serialization.replace_genomes writing output... [ 65%] emodpy_malaria.serialization.replace_genomes_get_next_barcode writing output... [ 67%] emodpy_malaria.serialization.zero_infections writing output... [ 69%] emodpy_malaria.vector_config writing output... [ 71%] emodpy_malaria.vector_migration writing output... [ 73%] emodpy_malaria.vector_migration.vector_migration writing output... [ 75%] emodpy_malaria.weather writing output... [ 77%] emodpy_malaria.weather.data_sources writing output... [ 79%] emodpy_malaria.weather.weather_data writing output... [ 81%] emodpy_malaria.weather.weather_metadata writing output... [ 83%] emodpy_malaria.weather.weather_request writing output... [ 85%] emodpy_malaria.weather.weather_set writing output... [ 87%] emodpy_malaria.weather.weather_utils writing output... [ 89%] emodpy_malaria.weather.weather_variable writing output... [ 91%] faq writing output... [ 93%] index writing output... [ 95%] installation writing output... [ 97%] installation-basic writing output... [100%] modules generating indices... genindex py-modindex done writing additional pages... search opensearch done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in ../_readthedocs/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2023-10-06T22:15:53.594386Z, end-time: 2023-10-06T22:16:06.866212Z, duration: 13, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... myst v0.18.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=[], disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area') building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 49 added, 0 changed, 0 removed reading sources... [ 2%] emodpy_malaria reading sources... [ 4%] emodpy_malaria.demographics reading sources... [ 6%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 8%] emodpy_malaria.interventions reading sources... [ 10%] emodpy_malaria.interventions.adherentdrug reading sources... [ 12%] emodpy_malaria.interventions.bednet reading sources... [ 14%] emodpy_malaria.interventions.common reading sources... [ 16%] emodpy_malaria.interventions.community_health_worker reading sources... [ 18%] emodpy_malaria.interventions.diag_survey reading sources... [ 20%] emodpy_malaria.interventions.drug reading sources... [ 22%] emodpy_malaria.interventions.drug_campaign reading sources... [ 24%] emodpy_malaria.interventions.inputeir reading sources... [ 26%] emodpy_malaria.interventions.irs reading sources... [ 28%] emodpy_malaria.interventions.ivermectin reading sources... [ 30%] emodpy_malaria.interventions.larvicide reading sources... [ 32%] emodpy_malaria.interventions.malaria_challenge reading sources... [ 34%] emodpy_malaria.interventions.mosquitorelease reading sources... [ 36%] emodpy_malaria.interventions.outbreak reading sources... [ 38%] emodpy_malaria.interventions.outdoorrestkill reading sources... [ 40%] emodpy_malaria.interventions.scale_larval_habitats reading sources... [ 42%] emodpy_malaria.interventions.spacespraying reading sources... [ 44%] emodpy_malaria.interventions.sugartrap reading sources... [ 46%] emodpy_malaria.interventions.treatment_seeking reading sources... [ 48%] emodpy_malaria.interventions.usage_dependent_bednet reading sources... [ 51%] emodpy_malaria.interventions.vaccine reading sources... [ 53%] emodpy_malaria.malaria_config reading sources... [ 55%] emodpy_malaria.malaria_vector_species_params reading sources... [ 57%] emodpy_malaria.reporters reading sources... [ 59%] emodpy_malaria.reporters.builtin /!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.7.8/configuration.html for details on how to configure idmtools. reading sources... [ 61%] emodpy_malaria.serialization reading sources... [ 63%] emodpy_malaria.serialization.replace_genomes reading sources... [ 65%] emodpy_malaria.serialization.replace_genomes_get_next_barcode reading sources... [ 67%] emodpy_malaria.serialization.zero_infections reading sources... [ 69%] emodpy_malaria.vector_config reading sources... [ 71%] emodpy_malaria.vector_migration reading sources... [ 73%] emodpy_malaria.vector_migration.vector_migration reading sources... [ 75%] emodpy_malaria.weather reading sources... [ 77%] emodpy_malaria.weather.data_sources reading sources... [ 79%] emodpy_malaria.weather.weather_data reading sources... [ 81%] emodpy_malaria.weather.weather_metadata reading sources... [ 83%] emodpy_malaria.weather.weather_request reading sources... [ 85%] emodpy_malaria.weather.weather_set reading sources... [ 87%] emodpy_malaria.weather.weather_utils reading sources... [ 89%] emodpy_malaria.weather.weather_variable reading sources... [ 91%] faq reading sources... [ 93%] index reading sources... [ 95%] installation reading sources... [ 97%] installation-basic reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation installation-basic modules emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.adherentdrug emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.community_health_worker emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.larvicide emodpy_malaria.interventions.malaria_challenge emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.scale_larval_habitats emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.usage_dependent_bednet emodpy_malaria.interventions.vaccine emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.serialization emodpy_malaria.serialization.replace_genomes emodpy_malaria.serialization.replace_genomes_get_next_barcode emodpy_malaria.serialization.zero_infections emodpy_malaria.vector_migration emodpy_malaria.vector_migration.vector_migration emodpy_malaria.weather emodpy_malaria.weather.data_sources emodpy_malaria.weather.weather_data emodpy_malaria.weather.weather_metadata emodpy_malaria.weather.weather_request emodpy_malaria.weather.weather_set emodpy_malaria.weather.weather_utils emodpy_malaria.weather.weather_variable emodpy_malaria.malaria_config emodpy_malaria.malaria_vector_species_params emodpy_malaria.vector_config faq done writing... done writing additional files... opensearchdone copying static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in ../_readthedocs/htmlzip. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2023-10-06T22:16:08.574637Z, end-time: 2023-10-06T22:16:21.515157Z, duration: 12, exit-code: 0 python -m sphinx -T -E -b latex -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/pdf Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... myst v0.18.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=[], disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area') building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [new config] 49 added, 0 changed, 0 removed reading sources... [ 2%] emodpy_malaria reading sources... [ 4%] emodpy_malaria.demographics reading sources... [ 6%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 8%] emodpy_malaria.interventions reading sources... [ 10%] emodpy_malaria.interventions.adherentdrug reading sources... [ 12%] emodpy_malaria.interventions.bednet reading sources... [ 14%] emodpy_malaria.interventions.common reading sources... [ 16%] emodpy_malaria.interventions.community_health_worker reading sources... [ 18%] emodpy_malaria.interventions.diag_survey reading sources... [ 20%] emodpy_malaria.interventions.drug reading sources... [ 22%] emodpy_malaria.interventions.drug_campaign reading sources... [ 24%] emodpy_malaria.interventions.inputeir reading sources... [ 26%] emodpy_malaria.interventions.irs reading sources... [ 28%] emodpy_malaria.interventions.ivermectin reading sources... [ 30%] emodpy_malaria.interventions.larvicide reading sources... 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[100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done processing emodpy-malaria-docs.tex... index installation installation-basic modules emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.adherentdrug emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.community_health_worker emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.larvicide emodpy_malaria.interventions.malaria_challenge emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.scale_larval_habitats emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.usage_dependent_bednet emodpy_malaria.interventions.vaccine emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.serialization emodpy_malaria.serialization.replace_genomes emodpy_malaria.serialization.replace_genomes_get_next_barcode emodpy_malaria.serialization.zero_infections emodpy_malaria.vector_migration emodpy_malaria.vector_migration.vector_migration emodpy_malaria.weather emodpy_malaria.weather.data_sources emodpy_malaria.weather.weather_data emodpy_malaria.weather.weather_metadata emodpy_malaria.weather.weather_request emodpy_malaria.weather.weather_set emodpy_malaria.weather.weather_utils emodpy_malaria.weather.weather_variable emodpy_malaria.malaria_config emodpy_malaria.malaria_vector_species_params emodpy_malaria.vector_config faq resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in ../_readthedocs/pdf. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/checkouts/latest/_readthedocs/pdf/_static/searchtools.js [rtd-command-info] start-time: 2023-10-06T22:16:23.597518Z, end-time: 2023-10-06T22:16:23.659027Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . 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In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [10] Underfull \hbox (badness 10000) in paragraph at lines 878--881 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [11] Underfull \hbox (badness 10000) in paragraph at lines 888--892 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 888--892 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [12] Overfull \hbox (27.94388pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (8.55386pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (4.09389pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 out_on_first_occurrence: [13] Underfull \hbox (badness 10000) in paragraph at lines 1026--1029 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1036--1039 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [14] Underfull \hbox (badness 10000) in paragraph at lines 1129--1132 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1139--1142 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (31.3137pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (29.93373pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (61.05371pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (9.43373pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (11.09373pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (2.46371pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 get_gender: Overfull \hbox (6.86372pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 tial_amount: Overfull \hbox (42.41373pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 amount_in_shipment: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (59.27374pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 days_between_shipments: Overfull \hbox (11.68375pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 3.40282e+38\T1/qtm/m/n/10 , Overfull \hbox (3.82375pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 tion_config: Overfull \hbox (1.05374pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 tional[][][any] Overfull \hbox (60.84373pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 max_distributed_per_day: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (0.53372pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 max_stock: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (2.71375pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 ing_period: [15] [16] Overfull \vbox (11.56755pt too high) has occurred while \output is active [17] Underfull \hbox (badness 10000) in paragraph at lines 1219--1222 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [18] Underfull \hbox (badness 10000) in paragraph at lines 1331--1336 []\T1/txtt/bx/n/10 diagnostic_type \T1/qtm/m/n/10 ^^U Type of malaria di-ag-nos -tic used. De-fault is [19] Underfull \hbox (badness 10000) in paragraph at lines 1387--1391 []\T1/qtm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1415--1418 []\T1/txtt/bx/n/10 measurement_sensitivity \T1/qtm/m/n/10 ^^U Set-ting for \T1/ qtm/b/n/10 Mea-sure-ment_Sensitivity \T1/qtm/m/n/10 in Underfull \hbox (badness 10000) in paragraph at lines 1444--1450 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v id-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1444--1450 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 1444--1450 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1452--1457 []\T1/txtt/bx/n/10 disqualifying_properties \T1/qtm/m/n/10 ^^U List of In-di-vi d-u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1452--1457 \T1/qtm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For Underfull \hbox (badness 10000) in paragraph at lines 1452--1457 \T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu e1"}, [20] Underfull \hbox (badness 10000) in paragraph at lines 1480--1484 []\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 [{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop- Overfull \hbox (1.69395pt too wide) in paragraph at lines 1501--1501 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1532--1535 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [21] Underfull \hbox (badness 10000) in paragraph at lines 1542--1545 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [22] Overfull \hbox (72.89397pt too wide) in paragraph at lines 1666--1666 \T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received _Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [23] [24] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) Underfull \hbox (badness 10000) in paragraph at lines 1845--1851 []\T1/txtt/bx/n/10 ind_prop_restr_birthtrigger_event \T1/qtm/m/n/10 ^^U List of In-di-vid-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1845--1851 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to cre-ate trig-ger event f or the in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 1845--1851 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, Overfull \hbox (25.23418pt too wide) in paragraph at lines 1901--1901 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (54.63417pt too wide) in paragraph at lines 1901--1901 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 25 undefined on input line 1904. [25] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1918--1918 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1918--1918 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 26 undefined on input line 1921. Overfull \hbox (30.48416pt too wide) in paragraph at lines 1935--1935 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1935--1935 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 26 undefined on input line 1938. Underfull \hbox (badness 10000) in paragraph at lines 1936--1940 []\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter- ven-tion to your cam-paign. See [26] Overfull \hbox (40.98413pt too wide) in paragraph at lines 1952--1952 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (70.38412pt too wide) in paragraph at lines 1952--1952 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 27 undefined on input line 1955. Overfull \hbox (35.73415pt too wide) in paragraph at lines 1969--1969 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (65.13414pt too wide) in paragraph at lines 1969--1969 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 27 undefined on input line 1972. [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 2110--2115 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v id-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 2110--2115 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2110--2115 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, [29] Overfull \hbox (33.23386pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (13.84384pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (26.20386pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 pelling_decay_time_constant: [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2272--2275 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2282--2285 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [32] Overfull \hbox (33.23386pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (13.84384pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (26.20386pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 pelling_decay_time_constant: [33] Underfull \hbox (badness 10000) in paragraph at lines 2405--2408 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2415--2418 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [34] [35] Underfull \hbox (badness 10000) in paragraph at lines 2605--2608 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [36] Underfull \hbox (badness 10000) in paragraph at lines 2615--2618 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [37] Underfull \hbox (badness 10000) in paragraph at lines 2718--2721 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [38] Underfull \hbox (badness 10000) in paragraph at lines 2808--2811 []\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^ PTEM-PO-RARY_RAINFALL^^Q, ^^PWA- Underfull \hbox (badness 10000) in paragraph at lines 2808--2811 \T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- [39] Overfull \hbox (54.1938pt too wide) in paragraph at lines 2916--2916 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (1.7138pt too wide) in paragraph at lines 2916--2916 \T1/qtm/m/it/10 leased_infectious: Overfull \hbox (19.54382pt too wide) in paragraph at lines 2916--2916 \T1/qtm/m/it/10 leased_microsporidia: [40] Underfull \hbox (badness 10000) in paragraph at lines 2937--2940 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 7576) in paragraph at lines 2953--2955 []\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t o re-lease, sets Re-leased_Type = [41] Underfull \hbox (badness 10000) in paragraph at lines 2964--2967 []\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec- tors re-leased that Underfull \hbox (badness 10000) in paragraph at lines 2964--2967 \T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.29498pt too wide) in paragraph at lines 2964--2967 \T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' [42] Underfull \hbox (badness 10000) in paragraph at lines 3060--3063 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3070--3073 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (12.19392pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (14.34396pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (79.13393pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (118.29388pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Overfull \hbox (74.29391pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 hrp_allele_frequencies_per_genome_location: [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3156--3159 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3166--3169 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 3207--3213 []\T1/txtt/bx/n/10 drug_resistant_string \T1/qtm/m/n/10 ^^U Used with `BAR-CODE _STRING' or `NU- Underfull \hbox (badness 10000) in paragraph at lines 3228--3234 []\T1/txtt/bx/n/10 barcode_allele_frequencies_per_genome_location \T1/qtm/m/n/1 0 ^^U Used with `AL- [45] Underfull \hbox (badness 10000) in paragraph at lines 3244--3249 []\T1/txtt/bx/n/10 hrp_allele_frequencies_per_genome_location \T1/qtm/m/n/10 ^^ U Used with `AL- Overfull \hbox (17.44391pt too wide) in paragraph at lines 3274--3274 \T1/qtm/m/it/10 timesteps_between_repetitions: [46] Underfull \hbox (badness 10000) in paragraph at lines 3307--3310 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3317--3320 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [47] Underfull \hbox (badness 10000) in paragraph at lines 3405--3408 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3415--3418 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [48] Overfull \hbox (59.44379pt too wide) in paragraph at lines 3505--3505 \T1/qtm/m/it/10 timesteps_between_repetitions: [49] Overfull \hbox (69.94376pt too wide) in paragraph at lines 3582--3582 \T1/qtm/m/it/10 timesteps_between_repetitions: [50] Underfull \hbox (badness 10000) in paragraph at lines 3616--3619 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Overfull \hbox (33.19386pt too wide) in paragraph at lines 3641--3641 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (26.16386pt too wide) in paragraph at lines 3641--3641 \T1/qtm/m/it/10 killing_decay_time_constant: Underfull \hbox (badness 10000) in paragraph at lines 3657--3660 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3775--3778 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [53] Overfull \hbox (5.13391pt too wide) in paragraph at lines 3877--3877 \T1/qtm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 3883--3892 []\T1/qtm/m/n/10 tar-gets is a list of dic-tio-nar-ies defin-ing the trig-ger e vent and cov-er-age for and prop-er- Underfull \hbox (badness 10000) in paragraph at lines 3883--3892 \T1/qtm/m/n/10 ties of in-di-vid-u-als to tar-get with the in-ter-ven-tion with all pos-si-ble op-tions be-ing: [{^^Ptrig- Underfull \hbox (badness 7685) in paragraph at lines 3883--3892 \T1/qtm/m/n/10 ger^^Q:^^QNewClinicalCase^^Q,^^Qcoverage^^Q:0.8,^^Qagemin^^Q:15, ^^Qagemax^^Q:70, ^^Prate^^Q:0.3}] ^^Prate^^Q is the in-verse of [54] Underfull \hbox (badness 10000) in paragraph at lines 3936--3938 []\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h ave to receive the Underfull \hbox (badness 10000) in paragraph at lines 3936--3938 \T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi dualProperty1:PropertyValue1", Overfull \hbox (39.43362pt too wide) in paragraph at lines 3969--3969 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (84.11362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_num_individuals: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (39.17361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]int[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (51.43361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (53.09361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 125\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (44.4636pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_gender: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (15.94359pt too wide) in paragraph at lines 3969--3969 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 All\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3969--3969 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3969--3969 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (91.64363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 dont_allow_duplicates: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 bool[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (24.21361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 False\T1/txtt/m/n/10 )| [55] [56] Overfull \vbox (1067.56755pt too high) has occurred while \output is active [57] Underfull \hbox (badness 6188) in paragraph at lines 3974--3979 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 4009--4012 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [58] [59] Overfull \hbox (39.43362pt too wide) in paragraph at lines 4189--4189 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 trig- Overfull \hbox (73.31358pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 trig- Overfull \hbox (93.44359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 gered_campaign_delay: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (46.39362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]float[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (10.27362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 lis- Overfull \hbox (12.89363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ten- Overfull \hbox (52.80362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (0.82362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 - Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tar- Overfull \hbox (51.43361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tar- Overfull \hbox (53.09361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 125\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tar- Overfull \hbox (44.4636pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 get_gender: Overfull \hbox (7.95361pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (15.94359pt too wide) in paragraph at lines 4189--4189 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 All\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 4189--4189 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 4189--4189 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (91.64363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 dont_allow_duplicates: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 bool[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (24.21361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 False\T1/txtt/m/n/10 )| [60] Overfull \vbox (1207.56999pt too high) has occurred while \output is active [61] Underfull \hbox (badness 6188) in paragraph at lines 4194--4200 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 4225--4228 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [62] [63] Overfull \hbox (88.19377pt too wide) in paragraph at lines 4419--4419 \T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [64] Underfull \hbox (badness 10000) in paragraph at lines 4463--4466 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4473--4476 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [65] Underfull \hbox (badness 10000) in paragraph at lines 4586--4589 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4596--4599 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [66] [67] Overfull \hbox (31.91403pt too wide) in paragraph at lines 4783--4783 \T1/qtm/m/it/10 cific_genome_combinations_for_stratification: [68] Underfull \hbox (badness 5119) in paragraph at lines 4833--4840 \T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_ GENOME^^Q spe- [69] [70] [71] Overfull \hbox (2.92401pt too wide) in paragraph at lines 5157--5157 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [72] Overfull \hbox (6.20389pt too wide) in paragraph at lines 5230--5230 \T1/qtm/m/it/10 must_have_ip_key_value: Overfull \hbox (1.87387pt too wide) in paragraph at lines 5230--5230 \T1/qtm/m/it/10 must_have_intervention: Overfull \hbox (55.41386pt too wide) in paragraph at lines 5230--5230 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [73] [74] Underfull \hbox (badness 5119) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T emperature^^Q, ^^PBirths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [75] [76] [77] [78] [79] Overfull \hbox (4.70392pt too wide) in paragraph at lines 5909--5909 \T1/qtm/m/it/10 ify_by_clinical_symptoms: [80] Overfull \hbox (38.49373pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 drug_resistant_strings: Overfull \hbox (102.98372pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 drug_resistant_and_hrp_statistic_type: Overfull \hbox (156.42372pt too wide) in paragraph at lines 5955--5955 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m /it/10 '\T1/qtm/m/n/10 , Overfull \hbox (18.46376pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 ip_key_to_collect: Overfull \hbox (4.78375pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 ify_by_gender: Overfull \hbox (37.74379pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 clude_identity_by_xxx: [81] Overfull \hbox (5.15385pt too wide) in paragraph at lines 6061--6061 \T1/qtm/m/it/10 clude_microsporidia: [82] [83] Underfull \hbox (badness 7308) in paragraph at lines 6131--6133 []\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or ex-clude, de-pend-ing on value of [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6338--6341 \T1/qtm/m/n/10 im-plies one should get data on days Start_Day, Start_Day+Sampli ng_Period, [86] Underfull \hbox (badness 10000) in paragraph at lines 6515--6521 []\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma lar-i-a-Trans-mis-sion.csv) is a csv re- Underfull \hbox (badness 6592) in paragraph at lines 6515--6521 \T1/qtm/m/n/10 port that pro-vides data on malaria trans-mis-sion, by track-ing who trans-mit-ted malaria to whom. Underfull \hbox (badness 10000) in paragraph at lines 6515--6521 \T1/qtm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/qtm/b/n/10 Malaria_Model \T1/qtm/m/n/10 is set to Underfull \hbox (badness 5388) in paragraph at lines 6515--6521 \T1/qtm/m/n/10 MALARIA_MECHANISTIC_MODEL_WITH_CO_TRANSMISSION. This re-port is typ-i-cally used as [87] [88] [89] [90] Overfull \hbox (3.4238pt too wide) in paragraph at lines 6879--6879 \T1/qtm/m/it/10 ing.Optional[str] [91] [92] [93] Overfull \hbox (20.40494pt too wide) in paragraph at lines 7292--7295 [] [94] Underfull \hbox (badness 10000) in paragraph at lines 7398--7402 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [95] [96] LaTeX Warning: Hyper reference `emodpy_malaria.vector_migration.vector_migratio n:emodpy_malaria.vector_migration.vector_migration.VectorMigration' on page 97 undefined on input line 7632. 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[113] Underfull \hbox (badness 10000) in paragraph at lines 9444--9447 []\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s im-u-la-tions Malaria_Model = Underfull \hbox (badness 6510) in paragraph at lines 9458--9460 []\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u es are ^^PFIXED_NEIGHBORHOOD^^Q, [114] Underfull \hbox (badness 10000) in paragraph at lines 9608--9612 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [115] Overfull \hbox (31.99455pt too wide) in paragraph at lines 9668--9671 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 9673--9676 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 9678--9681 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (4.75461pt too wide) in paragraph at lines 9683--9687 []\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi -crosporidia_Male_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 9689--9697 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9712--9720 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9712--9720 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [116] [117] [118] [119] [120] [121] [122] [123] Underfull \hbox (badness 10000) in paragraph at lines 10470--10474 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [124] Overfull \hbox (31.99455pt too wide) in paragraph at lines 10530--10533 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 10535--10538 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 10540--10543 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (4.75461pt too wide) in paragraph at lines 10545--10549 []\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi -crosporidia_Male_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 10551--10559 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 10574--10582 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 10574--10582 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [125] [126] Chapter 3. 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Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r .enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (141 pages, 563608 bytes). Transcript written on institute-for-disease-modeling-emodpy-malaria.log. Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emodpy-malaria.ind' from line 'No file institute-for-disease-modeling-emodpy-malaria.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: List of undefined refs and citations: Reference `emodpy_malaria.demographics.MalariaDemographics:module-emodpy_malaria.demographics.MalariaDemographics' on page 137 undefined on input line 11193 Reference `emodpy_malaria.demographics:module-emodpy_malaria.demographics' on page 137 undefined on input line 11192 Reference `emodpy_malaria.interventions.adherentdrug:module-emodpy_malaria.interventions.adherentdrug' on page 137 undefined on input line 11195 Reference `emodpy_malaria.interventions.bednet:module-emodpy_malaria.interventions.bednet' on page 137 undefined on input line 11196 Reference `emodpy_malaria.interventions.common:module-emodpy_malaria.interventions.common' on page 137 undefined on input line 11197 Reference `emodpy_malaria.interventions.community_health_worker:module-emodpy_malaria.interventions.community_health_worker' on page 137 undefined on input line 11198 Reference `emodpy_malaria.interventions.diag_survey:module-emodpy_malaria.interventions.diag_survey' on page 137 undefined on input line 11199 Reference `emodpy_malaria.interventions.drug:module-emodpy_malaria.interventions.drug' on page 137 undefined on input line 11200 Reference `emodpy_malaria.interventions.drug_campaign:module-emodpy_malaria.interventions.drug_campaign' on page 137 undefined on input line 11201 Reference `emodpy_malaria.interventions.inputeir:module-emodpy_malaria.interventions.inputeir' on page 137 undefined on input line 11202 Reference `emodpy_malaria.interventions.irs:module-emodpy_malaria.interventions.irs' on page 137 undefined on input line 11203 Reference `emodpy_malaria.interventions.ivermectin:module-emodpy_malaria.interventions.ivermectin' on page 137 undefined on input line 11204 Reference `emodpy_malaria.interventions.larvicide:module-emodpy_malaria.interventions.larvicide' on page 137 undefined on input line 11205 Reference `emodpy_malaria.interventions.malaria_challenge:module-emodpy_malaria.interventions.malaria_challenge' on page 137 undefined on input line 11206 Reference `emodpy_malaria.interventions.mosquitorelease:module-emodpy_malaria.interventions.mosquitorelease' on page 137 undefined on input line 11207 Reference `emodpy_malaria.interventions.outbreak:module-emodpy_malaria.interventions.outbreak' on page 137 undefined on input line 11208 Reference `emodpy_malaria.interventions.outdoorrestkill:module-emodpy_malaria.interventions.outdoorrestkill' on page 137 undefined on input line 11209 Reference `emodpy_malaria.interventions.scale_larval_habitats:module-emodpy_malaria.interventions.scale_larval_habitats' on page 137 undefined on input line 11210 Reference `emodpy_malaria.interventions.spacespraying:module-emodpy_malaria.interventions.spacespraying' on page 137 undefined on input line 11211 Reference `emodpy_malaria.interventions.sugartrap:module-emodpy_malaria.interventions.sugartrap' on page 137 undefined on input line 11212 Reference `emodpy_malaria.interventions.treatment_seeking:module-emodpy_malaria.interventions.treatment_seeking' on page 137 undefined on input line 11213 Reference `emodpy_malaria.interventions.usage_dependent_bednet:module-emodpy_malaria.interventions.usage_dependent_bednet' on page 137 undefined on input line 11214 Reference `emodpy_malaria.interventions.vaccine:module-emodpy_malaria.interventions.vaccine' on page 137 undefined on input line 11215 Reference `emodpy_malaria.interventions:module-emodpy_malaria.interventions' on page 137 undefined on input line 11194 Reference `emodpy_malaria.malaria_config:module-emodpy_malaria.malaria_config' on page 137 undefined on input line 11216 Reference `emodpy_malaria.malaria_vector_species_params:module-emodpy_malaria.malaria_vector_species_params' on page 137 undefined on input line 11217 Reference `emodpy_malaria.reporters.builtin:module-emodpy_malaria.reporters.builtin' on page 137 undefined on input line 11219 Reference `emodpy_malaria.reporters:module-emodpy_malaria.reporters' on page 137 undefined on input line 11218 Reference `emodpy_malaria.serialization.replace_genomes:module-emodpy_malaria.serialization.replace_genomes' on page 137 undefined on input line 11221 Reference `emodpy_malaria.serialization.replace_genomes_get_next_barcode:module-emodpy_malaria.serialization.replace_genomes_get_next_barcode' on page 137 undefined on input line 11222 Reference `emodpy_malaria.serialization.zero_infections:module-emodpy_malaria.serialization.zero_infections' on page 137 undefined on input line 11223 Reference `emodpy_malaria.serialization:module-emodpy_malaria.serialization' on page 137 undefined on input line 11220 Reference `emodpy_malaria.vector_config:module-emodpy_malaria.vector_config' on page 137 undefined on input line 11224 Reference `emodpy_malaria.vector_migration.vector_migration:module-emodpy_malaria.vector_migration.vector_migration' on page 137 undefined on input line 11226 Reference `emodpy_malaria.vector_migration:module-emodpy_malaria.vector_migration' on page 137 undefined on input line 11225 Reference `emodpy_malaria.weather.data_sources:module-emodpy_malaria.weather.data_sources' on page 137 undefined on input line 11228 Reference `emodpy_malaria.weather.weather_data:module-emodpy_malaria.weather.weather_data' on page 137 undefined on input line 11229 Reference `emodpy_malaria.weather.weather_metadata:module-emodpy_malaria.weather.weather_metadata' on page 137 undefined on input line 11230 Reference `emodpy_malaria.weather.weather_request:module-emodpy_malaria.weather.weather_request' on page 137 undefined on input line 11231 Reference `emodpy_malaria.weather.weather_set:module-emodpy_malaria.weather.weather_set' on page 137 undefined on input line 11232 Reference 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For Underfull \hbox (badness 10000) in paragraph at lines 1452--1457 \T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu e1"}, [20] Underfull \hbox (badness 10000) in paragraph at lines 1480--1484 []\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 [{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop- Overfull \hbox (1.69395pt too wide) in paragraph at lines 1501--1501 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1532--1535 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [21] Underfull \hbox (badness 10000) in paragraph at lines 1542--1545 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [22] Overfull \hbox (72.89397pt too wide) in paragraph at lines 1666--1666 \T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received _Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [23] [24] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) Underfull \hbox (badness 10000) in paragraph at lines 1845--1851 []\T1/txtt/bx/n/10 ind_prop_restr_birthtrigger_event \T1/qtm/m/n/10 ^^U List of In-di-vid-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1845--1851 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to cre-ate trig-ger event f or the in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 1845--1851 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, Overfull \hbox (25.23418pt too wide) in paragraph at lines 1901--1901 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (54.63417pt too wide) in paragraph at lines 1901--1901 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [25] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1918--1918 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1918--1918 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1935--1935 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1935--1935 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Underfull \hbox (badness 10000) in paragraph at lines 1936--1940 []\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter- ven-tion to your cam-paign. See [26] Overfull \hbox (40.98413pt too wide) in paragraph at lines 1952--1952 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (70.38412pt too wide) in paragraph at lines 1952--1952 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Overfull \hbox (35.73415pt too wide) in paragraph at lines 1969--1969 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (65.13414pt too wide) in paragraph at lines 1969--1969 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 2110--2115 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v id-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 2110--2115 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2110--2115 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, [29] Overfull \hbox (33.23386pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (13.84384pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (26.20386pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 pelling_decay_time_constant: [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2272--2275 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2282--2285 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [32] Overfull \hbox (33.23386pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (13.84384pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (26.20386pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 pelling_decay_time_constant: [33] Underfull \hbox (badness 10000) in paragraph at lines 2405--2408 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2415--2418 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [34] [35] Underfull \hbox (badness 10000) in paragraph at lines 2605--2608 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [36] Underfull \hbox (badness 10000) in paragraph at lines 2615--2618 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [37] Underfull \hbox (badness 10000) in paragraph at lines 2718--2721 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [38] Underfull \hbox (badness 10000) in paragraph at lines 2808--2811 []\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^ PTEM-PO-RARY_RAINFALL^^Q, ^^PWA- Underfull \hbox (badness 10000) in paragraph at lines 2808--2811 \T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- [39] Overfull \hbox (54.1938pt too wide) in paragraph at lines 2916--2916 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (1.7138pt too wide) in paragraph at lines 2916--2916 \T1/qtm/m/it/10 leased_infectious: Overfull \hbox (19.54382pt too wide) in paragraph at lines 2916--2916 \T1/qtm/m/it/10 leased_microsporidia: [40] Underfull \hbox (badness 10000) in paragraph at lines 2937--2940 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 7576) in paragraph at lines 2953--2955 []\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t o re-lease, sets Re-leased_Type = [41] Underfull \hbox (badness 10000) in paragraph at lines 2964--2967 []\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec- tors re-leased that Underfull \hbox (badness 10000) in paragraph at lines 2964--2967 \T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.29498pt too wide) in paragraph at lines 2964--2967 \T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' [42] Underfull \hbox (badness 10000) in paragraph at lines 3060--3063 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3070--3073 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (12.19392pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (14.34396pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (79.13393pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (118.29388pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Overfull \hbox (74.29391pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 hrp_allele_frequencies_per_genome_location: [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3156--3159 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3166--3169 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 3207--3213 []\T1/txtt/bx/n/10 drug_resistant_string \T1/qtm/m/n/10 ^^U Used with `BAR-CODE _STRING' or `NU- Underfull \hbox (badness 10000) in paragraph at lines 3228--3234 []\T1/txtt/bx/n/10 barcode_allele_frequencies_per_genome_location \T1/qtm/m/n/1 0 ^^U Used with `AL- [45] Underfull \hbox (badness 10000) in paragraph at lines 3244--3249 []\T1/txtt/bx/n/10 hrp_allele_frequencies_per_genome_location \T1/qtm/m/n/10 ^^ U Used with `AL- Overfull \hbox (17.44391pt too wide) in paragraph at lines 3274--3274 \T1/qtm/m/it/10 timesteps_between_repetitions: [46] Underfull \hbox (badness 10000) in paragraph at lines 3307--3310 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3317--3320 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [47] Underfull \hbox (badness 10000) in paragraph at lines 3405--3408 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3415--3418 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [48] Overfull \hbox (59.44379pt too wide) in paragraph at lines 3505--3505 \T1/qtm/m/it/10 timesteps_between_repetitions: [49] Overfull \hbox (69.94376pt too wide) in paragraph at lines 3582--3582 \T1/qtm/m/it/10 timesteps_between_repetitions: [50] Underfull \hbox (badness 10000) in paragraph at lines 3616--3619 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Overfull \hbox (33.19386pt too wide) in paragraph at lines 3641--3641 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (26.16386pt too wide) in paragraph at lines 3641--3641 \T1/qtm/m/it/10 killing_decay_time_constant: Underfull \hbox (badness 10000) in paragraph at lines 3657--3660 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3775--3778 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [53] Overfull \hbox (5.13391pt too wide) in paragraph at lines 3877--3877 \T1/qtm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 3883--3892 []\T1/qtm/m/n/10 tar-gets is a list of dic-tio-nar-ies defin-ing the trig-ger e vent and cov-er-age for and prop-er- Underfull \hbox (badness 10000) in paragraph at lines 3883--3892 \T1/qtm/m/n/10 ties of in-di-vid-u-als to tar-get with the in-ter-ven-tion with all pos-si-ble op-tions be-ing: [{^^Ptrig- Underfull \hbox (badness 7685) in paragraph at lines 3883--3892 \T1/qtm/m/n/10 ger^^Q:^^QNewClinicalCase^^Q,^^Qcoverage^^Q:0.8,^^Qagemin^^Q:15, ^^Qagemax^^Q:70, ^^Prate^^Q:0.3}] ^^Prate^^Q is the in-verse of [54] Underfull \hbox (badness 10000) in paragraph at lines 3936--3938 []\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h ave to receive the Underfull \hbox (badness 10000) in paragraph at lines 3936--3938 \T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi dualProperty1:PropertyValue1", Overfull \hbox (39.43362pt too wide) in paragraph at lines 3969--3969 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (84.11362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_num_individuals: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (39.17361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]int[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (51.43361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (53.09361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 125\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (44.4636pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_gender: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (15.94359pt too wide) in paragraph at lines 3969--3969 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 All\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3969--3969 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3969--3969 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (91.64363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 dont_allow_duplicates: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 bool[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (24.21361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 False\T1/txtt/m/n/10 )| [55] [56] Overfull \vbox (1067.56755pt too high) has occurred while \output is active [57] Underfull \hbox (badness 6188) in paragraph at lines 3974--3979 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 4009--4012 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [58] [59] Overfull \hbox (39.43362pt too wide) in paragraph at lines 4189--4189 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 trig- Overfull \hbox (73.31358pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 trig- Overfull \hbox (93.44359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 gered_campaign_delay: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (46.39362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]float[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (10.27362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 lis- Overfull \hbox (12.89363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ten- Overfull \hbox (52.80362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (0.82362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 - Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tar- Overfull \hbox (51.43361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tar- Overfull \hbox (53.09361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 125\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tar- Overfull \hbox (44.4636pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 get_gender: Overfull \hbox (7.95361pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (15.94359pt too wide) in paragraph at lines 4189--4189 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 All\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 4189--4189 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 4189--4189 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (91.64363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 dont_allow_duplicates: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 bool[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (24.21361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 False\T1/txtt/m/n/10 )| [60] Overfull \vbox (1207.56999pt too high) has occurred while \output is active [61] Underfull \hbox (badness 6188) in paragraph at lines 4194--4200 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 4225--4228 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [62] [63] Overfull \hbox (88.19377pt too wide) in paragraph at lines 4419--4419 \T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [64] Underfull \hbox (badness 10000) in paragraph at lines 4463--4466 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4473--4476 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [65] Underfull \hbox (badness 10000) in paragraph at lines 4586--4589 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4596--4599 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [66] [67] Overfull \hbox (31.91403pt too wide) in paragraph at lines 4783--4783 \T1/qtm/m/it/10 cific_genome_combinations_for_stratification: [68] Underfull \hbox (badness 5119) in paragraph at lines 4833--4840 \T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_ GENOME^^Q spe- [69] [70] [71] Overfull \hbox (2.92401pt too wide) in paragraph at lines 5157--5157 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [72] Overfull \hbox (6.20389pt too wide) in paragraph at lines 5230--5230 \T1/qtm/m/it/10 must_have_ip_key_value: Overfull \hbox (1.87387pt too wide) in paragraph at lines 5230--5230 \T1/qtm/m/it/10 must_have_intervention: Overfull \hbox (55.41386pt too wide) in paragraph at lines 5230--5230 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [73] [74] Underfull \hbox (badness 5119) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T emperature^^Q, ^^PBirths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [75] [76] [77] [78] [79] Overfull \hbox (4.70392pt too wide) in paragraph at lines 5909--5909 \T1/qtm/m/it/10 ify_by_clinical_symptoms: [80] Overfull \hbox (38.49373pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 drug_resistant_strings: Overfull \hbox (102.98372pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 drug_resistant_and_hrp_statistic_type: Overfull \hbox (156.42372pt too wide) in paragraph at lines 5955--5955 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m /it/10 '\T1/qtm/m/n/10 , Overfull \hbox (18.46376pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 ip_key_to_collect: Overfull \hbox (4.78375pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 ify_by_gender: Overfull \hbox (37.74379pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 clude_identity_by_xxx: [81] Overfull \hbox (5.15385pt too wide) in paragraph at lines 6061--6061 \T1/qtm/m/it/10 clude_microsporidia: [82] [83] Underfull \hbox (badness 7308) in paragraph at lines 6131--6133 []\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or ex-clude, de-pend-ing on value of [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6338--6341 \T1/qtm/m/n/10 im-plies one should get data on days Start_Day, Start_Day+Sampli ng_Period, [86] Underfull \hbox (badness 10000) in paragraph at lines 6515--6521 []\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma lar-i-a-Trans-mis-sion.csv) is a csv re- Underfull \hbox (badness 6592) in paragraph at lines 6515--6521 \T1/qtm/m/n/10 port that pro-vides data on malaria trans-mis-sion, by track-ing who trans-mit-ted malaria to whom. Underfull \hbox (badness 10000) in paragraph at lines 6515--6521 \T1/qtm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/qtm/b/n/10 Malaria_Model \T1/qtm/m/n/10 is set to Underfull \hbox (badness 5388) in paragraph at lines 6515--6521 \T1/qtm/m/n/10 MALARIA_MECHANISTIC_MODEL_WITH_CO_TRANSMISSION. This re-port is typ-i-cally used as [87] [88] [89] [90] Overfull \hbox (3.4238pt too wide) in paragraph at lines 6879--6879 \T1/qtm/m/it/10 ing.Optional[str] [91] [92] [93] Overfull \hbox (20.40494pt too wide) in paragraph at lines 7292--7295 [] [94] Underfull \hbox (badness 10000) in paragraph at lines 7398--7402 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [95] [96] Overfull \hbox (96.93362pt too wide) in paragraph at lines 7632--7632 []\T1/qtm/m/it/10 demographics_file_path: Overfull \hbox (10.45361pt too wide) in paragraph at lines 7632--7632 [][]\T1/qtm/m/it/10 str[][]\T1/qtm/m/n/10 , Overfull \hbox (30.57362pt too wide) in paragraph at lines 7632--7632 \T1/qtm/m/it/10 params: Overfull \hbox (10.45361pt too wide) in paragraph at lines 7632--7632 [][]\T1/qtm/m/it/10 str[][]\T1/qtm/m/n/10 , Overfull \hbox (24.4136pt too wide) in paragraph at lines 7632--7632 \T1/qtm/m/it/10 id_ref: Overfull \hbox (10.45361pt too wide) in paragraph at lines 7632--7632 [][]\T1/qtm/m/it/10 str[][]\T1/qtm/m/n/10 , Overfull \hbox (10.82362pt too wide) in paragraph at lines 7632--7632 \T1/qtm/m/it/10 mi- Overfull \hbox (14.26363pt too wide) in paragraph at lines 7632--7632 \T1/qtm/m/it/10 gra- Overfull \hbox (51.71361pt too wide) in paragraph at lines 7632--7632 \T1/qtm/m/it/10 tion_type=1\T1/txtt/m/n/10 ) Overfull \hbox (7.49364pt too wide) in paragraph at lines 7632--7632 \OMS/cmsy/m/n/10 !$ Overfull \hbox (275.86359pt too wide) in paragraph at lines 7632--7632 [][]\T1/qtm/m/it/10 emodpy_malaria.vector_migration.vector_migration.VectorMigr ation[][]| Overfull \hbox (8.51367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 graph- Overfull \hbox (24.79367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 ics_object\T1/qtm/m/n/10 , Overfull \hbox (2.95367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 grav- Overfull \hbox (29.82367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 ity_params: Overfull \hbox (33.21367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 tion_type=3\T1/qtm/m/n/10 , Overfull \hbox (6.73367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 name: Overfull \hbox (23.32365pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 tional[][][[][]str[][]] Overfull \hbox (7.85365pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [97] [98] [99] Overfull \hbox (21.45433pt too wide) in paragraph at lines 7883--7883 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (11.94434pt too wide) in paragraph at lines 7883--7883 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me tadata.WeatherAttributes[][]\T1/qtm/m/it/10 ] Overfull \hbox (21.45433pt too wide) in paragraph at lines 7883--7883 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [100] Overfull \hbox (21.45433pt too wide) in paragraph at lines 7942--7942 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (21.45433pt too wide) in paragraph at lines 7942--7942 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (5.21489pt too wide) in paragraph at lines 7974--7977 [] [101] Overfull \hbox (93.15411pt too wide) in paragraph at lines 8017--8017 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me tadata.WeatherMetadata[][]\T1/qtm/m/it/10 ] [102] [103] [104] [105] Overfull \hbox (162.35397pt too wide) in paragraph at lines 8457--8457 \T1/qtm/m/it/10 tional[][][[][]Union[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weat her.weather_metadata.WeatherMetadata[][]\T1/qtm/m/it/10 , Overfull \hbox (109.32397pt too wide) in paragraph at lines 8457--8457 [][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_metadata.WeatherAttributes[][ ]\T1/qtm/m/it/10 , [106] Overfull \hbox (79.22398pt too wide) in paragraph at lines 8687--8687 \T1/qtm/m/it/10 tools_platform_comps.comps_platform.COMPSPlatform[][]]\T1/qtm/m /n/10 , [107] Overfull \hbox (94.95412pt too wide) in paragraph at lines 8810--8810 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (94.95412pt too wide) in paragraph at lines 8810--8810 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 9113--9117 []\T1/qtm/m/n/10 For ex-am-ple, air Underfull \hbox (badness 10000) in paragraph at lines 9113--9117 \T1/qtm/m/n/10 tem-per-a-ture could be rep-re-sented as: Weath-er-Vari-able.AIR _TEMPERATURE: Overfull \hbox (23.18442pt too wide) in paragraph at lines 9128--9128 \T1/qtm/m/it/10 tional[][][[][]List[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 ]] Overfull \hbox (20.21443pt too wide) in paragraph at lines 9128--9128 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [111] Overfull \hbox (21.12492pt too wide) in paragraph at lines 9156--9159 [] Underfull \hbox (badness 10000) in paragraph at lines 9156--9159 \T1/qtm/m/n/10 In this case low-er-case weather vari-able names are used, for e x-am-ple: [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9444--9447 []\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s im-u-la-tions Malaria_Model = Underfull \hbox (badness 6510) in paragraph at lines 9458--9460 []\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u es are ^^PFIXED_NEIGHBORHOOD^^Q, [114] Underfull \hbox (badness 10000) in paragraph at lines 9608--9612 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [115] Overfull \hbox (31.99455pt too wide) in paragraph at lines 9668--9671 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 9673--9676 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 9678--9681 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (4.75461pt too wide) in paragraph at lines 9683--9687 []\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi -crosporidia_Male_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 9689--9697 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9712--9720 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9712--9720 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [116] [117] [118] [119] [120] [121] [122] [123] Underfull \hbox (badness 10000) in paragraph at lines 10470--10474 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [124] Overfull \hbox (31.99455pt too wide) in paragraph at lines 10530--10533 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 10535--10538 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 10540--10543 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (4.75461pt too wide) in paragraph at lines 10545--10549 []\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi -crosporidia_Male_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 10551--10559 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 10574--10582 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 10574--10582 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [125] [126] Chapter 3. [127] [128] [129] Overfull \hbox (15.08487pt too wide) in paragraph at lines 10844--10846 \T1/qtm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/@idmod.org:@packages.idmod.org/api/pypi/pypi- [130] [131] [132] [133] [134] [135] [136] Overfull \hbox (19.37178pt too wide) in paragraph at lines 11193--11194 []\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 , Overfull \hbox (45.6217pt too wide) in paragraph at lines 11198--11199 []\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m /n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11201--11202 []\T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 , Overfull \hbox (14.1218pt too wide) in paragraph at lines 11206--11207 []\T1/txtt/m/n/10 emodpy_malaria.interventions.malaria_challenge\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 11207--11208 []\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 11209--11210 []\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 11210--11211 []\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 11211--11212 []\T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 , Overfull \hbox (14.1218pt too wide) in paragraph at lines 11213--11214 []\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 , Overfull \hbox (40.37172pt too wide) in paragraph at lines 11214--11215 []\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/ n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 11217--11218 []\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 11221--11222 []\T1/txtt/m/n/10 emodpy_malaria.serialization.replace_genomes\T1/qtm/m/n/10 , Overfull \hbox (92.87157pt too wide) in paragraph at lines 11222--11223 []\T1/txtt/m/n/10 emodpy_malaria.serialization.replace_genomes_get_next_barcode \T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 11223--11224 []\T1/txtt/m/n/10 emodpy_malaria.serialization.zero_infections\T1/qtm/m/n/10 , Overfull \hbox (24.62177pt too wide) in paragraph at lines 11226--11227 []\T1/txtt/m/n/10 emodpy_malaria.vector_migration.vector_migration\T1/qtm/m/n/1 0 , [137] (./institute-for-disease-modeling-emodpy-malaria.ind [138] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 8--10 \T1/qtm/m/it/10 emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 10--12 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/txtt/m/n/10 add_challenge_trial() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.59247pt too wide) in paragraph at lines 12--14 \T1/qtm/m/it/10 emodpy_malaria.interventions.malaria_challenge\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 14--16 []\T1/txtt/m/n/10 add_community_health_worker() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.96248pt too wide) in paragraph at lines 14--16 \T1/qtm/m/it/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m/n /10 ), Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/txtt/m/n/10 add_diagnostic_survey() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 16--18 \T1/qtm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/txtt/m/n/10 add_drug_campaign() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (4.22249pt too wide) in paragraph at lines 18--20 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/txtt/m/n/10 add_drug_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/txtt/m/n/10 add_drug_status_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/txtt/m/n/10 add_event_recorder() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/txtt/m/n/10 add_fMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 26--28 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/txtt/m/n/10 add_genes_and_alleles() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/txtt/m/n/10 add_habitat_reduction_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 30--32 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 add_human_migration_tracking() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 add_initial_vectors_per_species() Overfull \hbox (127.35252pt too wide) in paragraph at lines 34--36 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 add_initial_vectors_per_species_from_csv() Overfull \hbox (127.35252pt too wide) in paragraph at lines 36--38 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 add_IPTi() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 42--44 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 add_itn_scheduled() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/txtt/m/n/10 add_itn_triggered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 48--50 []\T1/txtt/m/n/10 add_larval_habitat_multiplier() Overfull \hbox (127.35252pt too wide) in paragraph at lines 48--50 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/txtt/m/n/10 add_larvicide() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 50--52 \T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/txtt/m/n/10 add_malaria_immunity_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/txtt/m/n/10 add_malaria_patient_json_report() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/txtt/m/n/10 add_malaria_summary_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 60--62 []\T1/txtt/m/n/10 add_malaria_survey_analyzer() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/txtt/m/n/10 add_MDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 62--64 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/txtt/m/n/10 add_MSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 68--70 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/txtt/m/n/10 add_mutation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/txtt/m/n/10 add_outbreak_individual() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 72--74 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 74--76 []\T1/txtt/m/n/10 add_outbreak_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/ 10 in mod-ule [139] Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/txtt/m/n/10 add_outbreak_malaria_var_genes() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/txtt/m/n/10 add_outdoorrestkill() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/txtt/m/n/10 add_report_event_counter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/txtt/m/n/10 add_report_fpg_output() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/txtt/m/n/10 add_report_intervention_pop_avg() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 88--90 []\T1/txtt/m/n/10 add_report_malaria_filtered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 90--92 []\T1/txtt/m/n/10 add_report_malaria_filtered_intrahost() \T1/qtm/m/n/10 (\T1/q tm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 add_report_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 94--96 []\T1/txtt/m/n/10 add_report_node_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 96--98 []\T1/txtt/m/n/10 add_report_node_demographics_malaria() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (16.87178pt too wide) in paragraph at lines 98--100 []\T1/txtt/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 add_report_simulation_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/txtt/m/n/10 add_report_vector_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 add_report_vector_migration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 add_report_vector_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/txtt/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/txtt/m/n/10 add_rfMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 110--112 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 add_rfMSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 112--114 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 114--116 []\T1/txtt/m/n/10 add_scale_larval_habitats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 114--116 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 116--118 []\T1/txtt/m/n/10 add_scheduled_antimalarial_drug() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 add_scheduled_input_eir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 118--120 \T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 add_scheduled_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 add_scheduled_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 122--124 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/txtt/m/n/10 add_scheduled_mosquito_release() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (5.84247pt too wide) in paragraph at lines 124--126 \T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/txtt/m/n/10 add_scheduled_space_spraying() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 126--128 \T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 add_scheduled_sugar_trap() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 128--130 \T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/txtt/m/n/10 add_scheduled_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 130--132 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 132--134 []\T1/txtt/m/n/10 add_scheduled_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 132--134 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/txtt/m/n/10 add_species_drivers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/txtt/m/n/10 add_sql_report_malaria() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/txtt/m/n/10 add_sql_report_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 146--147 []\T1/txtt/m/n/10 add_trait() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 147--149 []\T1/txtt/m/n/10 add_treatment_seeking() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (13.81248pt too wide) in paragraph at lines 147--149 \T1/qtm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 149--151 \T1/qtm/m/it/10 ule emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 151--153 []\T1/txtt/m/n/10 add_triggered_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 153--155 []\T1/txtt/m/n/10 add_triggered_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 153--155 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 155--157 []\T1/txtt/m/n/10 add_triggered_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 155--157 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 157--159 []\T1/txtt/m/n/10 add_triggered_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 157--159 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 159--161 []\T1/txtt/m/n/10 add_vector_habitat_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 161--163 []\T1/txtt/m/n/10 add_visualizations() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 163--165 []\T1/txtt/m/n/10 adherent_drug() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 163--165 \T1/qtm/m/it/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 ), [140] Overfull \hbox (100.74232pt too wide) in paragraph at lines 165--167 []\T1/txtt/m/n/10 AgesYears \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vect or_migration.vector_migration.VectorMigration Overfull \hbox (97.69139pt too wide) in paragraph at lines 167--169 []\T1/txtt/m/n/10 AIR_TEMPERATURE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_variable.WeatherVariable Underfull \hbox (badness 10000) in paragraph at lines 169--171 []\T1/txtt/m/n/10 all_vectors_if_none() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (79.26231pt too wide) in paragraph at lines 171--173 []\T1/txtt/m/n/10 attributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherMetadata Overfull \hbox (27.04231pt too wide) in paragraph at lines 173--175 []\T1/txtt/m/n/10 attributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Overfull \hbox (106.63223pt too wide) in paragraph at lines 175--177 []\T1/txtt/m/n/10 attributes_dict \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_metadata.WeatherAttributes Overfull \hbox (84.99237pt too wide) in paragraph at lines 177--179 []\T1/txtt/m/n/10 Author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vector_ migration.vector_migration.VectorMigration Overfull \hbox (59.38237pt too wide) in paragraph at lines 179--181 []\T1/txtt/m/n/10 author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_metadata.WeatherAttributes Overfull \hbox (39.70238pt too wide) in paragraph at lines 184--186 []\T1/txtt/m/n/10 barcode \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.serial ization.replace_genomes.Genome Underfull \hbox (badness 10000) in paragraph at lines 189--191 []\T1/txtt/m/n/10 check_vectors() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (52.95236pt too wide) in paragraph at lines 191--193 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaImmunityReport Overfull \hbox (66.65236pt too wide) in paragraph at lines 193--195 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaPatientJSONReport Overfull \hbox (53.25237pt too wide) in paragraph at lines 195--197 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSummaryReport Overfull \hbox (73.90236pt too wide) in paragraph at lines 197--199 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (27.91235pt too wide) in paragraph at lines 199--201 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor 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too wide) in paragraph at lines 211--213 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportMalariaFiltered Overfull \hbox (85.14232pt too wide) in paragraph at lines 213--215 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportMalariaFilteredIntraHost Overfull \hbox (39.93236pt too wide) in paragraph at lines 215--217 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportMicrosporidia Overfull \hbox (61.69237pt too wide) in paragraph at lines 217--219 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportNodeDemographics Overfull \hbox (94.47237pt too wide) in paragraph at lines 219--221 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportNodeDemographicsMalaria Overfull \hbox (129.31238pt too wide) in paragraph at lines 221--223 []\T1/txtt/m/n/10 config() 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paragraph at lines 243--245 []\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 245--247 []\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 247--249 []\T1/txtt/m/n/10 convert_char_to_int() Overfull \hbox (41.28249pt too wide) in paragraph at lines 247--249 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.serialization.replace_genomes.Ge nome Overfull \hbox (81.70226pt too wide) in paragraph at lines 249--251 []\T1/txtt/m/n/10 create_genome() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.serialization.replace_genomes.Genome Underfull \hbox (badness 10000) in paragraph at lines 251--252 []\T1/txtt/m/n/10 csv_to_weather() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (10.29239pt too wide) in paragraph at lines 255--257 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w eather_data.WeatherData Overfull \hbox (48.51231pt too wide) in paragraph at lines 257--259 []\T1/txtt/m/n/10 data_id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weathe r.weather_request.WeatherRequest Overfull \hbox (80.38231pt too wide) in paragraph at lines 259--261 []\T1/txtt/m/n/10 data_years \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherAttributes Underfull \hbox (badness 10000) in paragraph at lines 261--263 []\T1/txtt/m/n/10 DataFrameInfo \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 261--263 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_data\T1/qtm/m/n/10 ), Overfull \hbox (34.68227pt too wide) in paragraph at lines 263--265 []\T1/txtt/m/n/10 DataSource \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emodpy_ma laria.weather.weather_request\T1/qtm/m/n/10 ), Overfull \hbox (105.51224pt too wide) in paragraph at lines 265--267 []\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 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lines 381--383 []\T1/txtt/m/n/10 file_names \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet [142] Overfull \hbox (52.54227pt too wide) in paragraph at lines 383--385 []\T1/txtt/m/n/10 file_prefix \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_request.DataSource Overfull \hbox (38.01234pt too wide) in paragraph at lines 385--387 []\T1/txtt/m/n/10 files \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather. weather_request.WeatherRequest Overfull \hbox (69.51225pt too wide) in paragraph at lines 387--389 []\T1/txtt/m/n/10 files_exist \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_request.WeatherRequest Underfull \hbox (badness 10000) in paragraph at lines 389--391 []\T1/txtt/m/n/10 fmda_cfg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 389--391 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at 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too wide) in paragraph at lines 409--411 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.WeatherData Overfull \hbox (47.04228pt too wide) in paragraph at lines 411--413 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.WeatherData Overfull \hbox (84.5123pt too wide) in paragraph at lines 413--415 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_metadata.WeatherMetadata Underfull \hbox (badness 10000) in paragraph at lines 415--417 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (25.90247pt too wide) in paragraph at lines 415--417 \T1/qtm/m/it/10 emodpy_malaria.vector_migration.vector_migration\T1/qtm/m/n/10 ), Overfull \hbox (37.54228pt too wide) in paragraph at lines 417--419 []\T1/txtt/m/n/10 from_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 419--421 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.1975pt too wide) in paragraph at lines 419--421 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 421--423 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (25.90247pt too wide) in paragraph at lines 421--423 \T1/qtm/m/it/10 emodpy_malaria.vector_migration.vector_migration\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 423--425 []\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.1975pt too wide) in paragraph at lines 423--425 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 425--427 []\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le 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(\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 439--441 []\T1/txtt/m/n/10 get_file_from_http() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 441--443 []\T1/txtt/m/n/10 get_next_barcode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (83.76248pt too wide) in paragraph at lines 441--443 \T1/qtm/m/it/10 emodpy_malaria.serialization.replace_genomes_get_next_barcode\T 1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 443--445 []\T1/txtt/m/n/10 get_next_genome() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.01746pt too wide) in paragraph at lines 443--445 \T1/qtm/m/it/10 emodpy_malaria.serialization.replace_genomes\T1/qtm/m/n/10 ), Overfull \hbox (147.99219pt too wide) in paragraph at lines 445--447 []\T1/txtt/m/n/10 get_node_offsets() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal aria.vector_migration.vector_migration.VectorMigration Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 449--451 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 454--456 []\T1/txtt/m/n/10 hash_series() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 454--456 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Overfull \hbox (44.95236pt too wide) in paragraph at lines 456--458 []\T1/txtt/m/n/10 hashcode \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.seria lization.replace_genomes.Genome Overfull \hbox (90.88228pt too wide) in paragraph at lines 461--463 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherAttributes Overfull \hbox (111.2423pt too wide) in paragraph at lines 463--465 []\T1/txtt/m/n/10 IdReference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.ve ctor_migration.vector_migration.VectorMigration Overfull \hbox (142.7422pt too wide) in paragraph at lines 465--467 []\T1/txtt/m/n/10 InterpolationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.vector_migration.vector_migration.VectorMigration Underfull \hbox (badness 10000) in paragraph at lines 467--469 []\T1/txtt/m/n/10 invert_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 467--469 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 469--471 []\T1/txtt/m/n/10 irs_configuration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (11.29236pt too wide) in paragraph at lines 471--473 []\T1/txtt/m/n/10 items() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weathe r.weather_set.WeatherSet Overfull \hbox (6.04237pt too wide) in paragraph at lines 476--478 []\T1/txtt/m/n/10 keys() 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\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather Attributes Overfull \hbox (121.74226pt too wide) in paragraph at lines 514--516 []\T1/txtt/m/n/10 MigrationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria. vector_migration.vector_migration.VectorMigration Overfull \hbox (39.37178pt too wide) in paragraph at lines 519--520 []| \T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/ 10 , Overfull \hbox (7.87187pt too wide) in paragraph at lines 521--522 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 , Overfull \hbox (65.6217pt too wide) in paragraph at lines 524--525 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm /m/n/10 , Overfull \hbox (2.62189pt too wide) in paragraph at lines 525--526 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 527--528 []| \T1/txtt/m/n/10 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577--579 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (5.84247pt too wide) in paragraph at lines 577--579 \T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 579--581 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 579--581 \T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 581--583 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 581--583 \T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 583--585 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (41.7425pt too wide) in paragraph at lines 583--585 \T1/qtm/m/it/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 585--587 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 585--587 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Overfull \hbox (55.58226pt too wide) in paragraph at lines 587--589 []\T1/txtt/m/n/10 node_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.DataFrameInfo Overfull \hbox (79.26231pt too wide) in paragraph at lines 589--591 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherMetadata Overfull \hbox (105.51224pt too wide) in paragraph at lines 591--593 []\T1/txtt/m/n/10 node_offset_str \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_metadata.WeatherMetadata Overfull \hbox (89.76228pt too wide) in paragraph at lines 593--595 []\T1/txtt/m/n/10 node_offsets \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherMetadata Overfull \hbox (57.95233pt too wide) in paragraph at lines 595--597 []\T1/txtt/m/n/10 NodeCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vect or_migration.vector_migration.Layer Overfull \hbox (100.74232pt too wide) in paragraph at lines 597--599 []\T1/txtt/m/n/10 NodeCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vect or_migration.vector_migration.VectorMigration Overfull \hbox (111.2423pt too wide) in paragraph at lines 599--601 []\T1/txtt/m/n/10 NodeOffsets \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.ve ctor_migration.vector_migration.VectorMigration Overfull \hbox (79.74239pt too wide) in paragraph at lines 601--603 []\T1/txtt/m/n/10 Nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vector_m igration.vector_migration.VectorMigration Overfull \hbox (53.01239pt too wide) in paragraph at lines 603--605 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather. weather_metadata.WeatherMetadata Overfull \hbox (89.76228pt too wide) in paragraph at lines 608--610 []\T1/txtt/m/n/10 offset_nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherMetadata Underfull \hbox (badness 10000) in paragraph at lines 610--612 []\T1/txtt/m/n/10 ONE_FOR_EACH_GENDER Overfull \hbox (91.82246pt too wide) in paragraph at lines 610--612 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vector_migration.vector_migratio n.VectorMigration Overfull \hbox (63.45233pt too wide) in paragraph at lines 615--617 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaImmunityReport Overfull \hbox (77.15233pt too wide) in paragraph at lines 617--619 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaPatientJSONReport Overfull \hbox (63.75233pt too wide) in paragraph at lines 619--621 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaSummaryReport Overfull \hbox (84.40233pt too wide) in paragraph at lines 621--623 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (38.41232pt too wide) in paragraph at lines 623--625 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportDrugStatus Overfull \hbox (48.00232pt too wide) in paragraph at lines 625--627 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportEventCounter Overfull \hbox (133.81233pt too wide) in paragraph at lines 627--629 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportFpgOutputForObservationalModel Overfull \hbox (96.7623pt too wide) in paragraph at lines 629--631 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 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orters.builtin.ReportMicrosporidia Overfull \hbox (72.19234pt too wide) in paragraph at lines 641--643 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographics Overfull \hbox (104.97234pt too wide) in paragraph at lines 643--645 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographicsMalaria Overfull \hbox (139.81235pt too wide) in paragraph at lines 645--647 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (105.7023pt too wide) in paragraph at lines 647--649 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportSimpleMalariaTransmission Overfull \hbox (55.54233pt too wide) in paragraph at lines 649--651 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportSimulationStats 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661--663 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.SqlReportMalaria [145] Overfull \hbox (73.30234pt too wide) in paragraph at lines 663--665 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.SqlReportMalariaGenetics Overfull \hbox (49.27232pt too wide) in paragraph at lines 665--667 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.VectorHabitatReport Underfull \hbox (badness 10000) in paragraph at lines 667--669 []\T1/txtt/m/n/10 parse_date() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 667--669 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Overfull \hbox (147.99136pt too wide) in paragraph at lines 669--671 []\T1/txtt/m/n/10 PIECEWISE_CONSTANT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal aria.vector_migration.vector_migration.VectorMigration Underfull \hbox (badness 10000) in paragraph at lines 671--673 []\T1/txtt/m/n/10 print_hashcodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.01746pt too wide) in paragraph at lines 671--673 \T1/qtm/m/it/10 emodpy_malaria.serialization.replace_genomes\T1/qtm/m/n/10 ), Overfull \hbox (80.38231pt too wide) in paragraph at lines 673--675 []\T1/txtt/m/n/10 provenance \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherAttributes Overfull \hbox (60.9415pt too wide) in paragraph at lines 678--680 []\T1/txtt/m/n/10 RAINFALL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_variable.WeatherVariable Overfull \hbox (147.99136pt too wide) in paragraph at lines 680--682 []\T1/txtt/m/n/10 REGIONAL_MIGRATION \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal aria.vector_migration.vector_migration.VectorMigration Overfull \hbox (108.19136pt too wide) in paragraph at lines 682--684 []\T1/txtt/m/n/10 RELATIVE_HUMIDITY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_variable.WeatherVariable Underfull \hbox (badness 10000) in paragraph at lines 684--686 []\T1/txtt/m/n/10 replace_genomes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.01746pt too wide) in paragraph at lines 684--686 \T1/qtm/m/it/10 emodpy_malaria.serialization.replace_genomes\T1/qtm/m/n/10 ), Overfull \hbox (43.26233pt too wide) in paragraph at lines 686--688 []\T1/txtt/m/n/10 report \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_request.WeatherRequest Underfull \hbox (badness 10000) in paragraph at lines 688--690 []\T1/txtt/m/n/10 ReportDrugStatus \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 690--692 []\T1/txtt/m/n/10 ReportEventCounter \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 694--696 []\T1/txtt/m/n/10 ReportHumanMigrationTracking \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 696--698 []\T1/txtt/m/n/10 ReportInfectionStatsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 c lass in Underfull \hbox (badness 10000) in paragraph at lines 698--700 []\T1/txtt/m/n/10 ReportInterventionPopAvg \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas s in Underfull \hbox (badness 10000) in paragraph at lines 700--702 []\T1/txtt/m/n/10 ReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/txtt/m/n/10 ReportMalariaFilteredIntraHost \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 class in Underfull \hbox (badness 10000) in paragraph at lines 704--706 []\T1/txtt/m/n/10 ReportMicrosporidia \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 706--708 []\T1/txtt/m/n/10 ReportNodeDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 708--710 []\T1/txtt/m/n/10 ReportNodeDemographicsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 712--714 []\T1/txtt/m/n/10 ReportSimpleMalariaTransmission \T1/qtm/m/n/10 (\T1/qtm/m/it/ 10 class in Underfull \hbox (badness 10000) in paragraph at lines 714--716 []\T1/txtt/m/n/10 ReportSimulationStats \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 716--718 []\T1/txtt/m/n/10 ReportVectorGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 718--720 []\T1/txtt/m/n/10 ReportVectorMigration \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 720--722 []\T1/txtt/m/n/10 ReportVectorStats \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 722--724 []\T1/txtt/m/n/10 ReportVectorStatsMalariaGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it /10 class in Underfull \hbox (badness 10000) in paragraph at lines 724--726 []\T1/txtt/m/n/10 RequestReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 724--726 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_request\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/txtt/m/n/10 required_metadata_defaults_dict() Overfull \hbox (66.21246pt too wide) in paragraph at lines 726--728 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather Attributes Underfull \hbox (badness 10000) in paragraph at lines 731--733 []\T1/txtt/m/n/10 SAME_FOR_BOTH_GENDERS Overfull \hbox (91.82246pt too wide) in paragraph at lines 731--733 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vector_migration.vector_migratio n.VectorMigration Underfull \hbox (badness 10000) in paragraph at lines 733--735 []\T1/txtt/m/n/10 save_json() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 733--735 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at 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aria.serialization.replace_genomes.Genome Underfull \hbox (badness 10000) in paragraph at lines 745--747 []\T1/txtt/m/n/10 set_drug_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 747--749 []\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 749--751 []\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 751--753 []\T1/txtt/m/n/10 set_parasite_genetics_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (167.7723pt too wide) in paragraph at lines 753--755 []\T1/txtt/m/n/10 set_risk_high() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.demographics.MalariaDemographics.MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 755--757 []\T1/txtt/m/n/10 set_risk_lowmedium() Overfull \hbox (127.35252pt too wide) in paragraph at lines 755--757 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 757--759 []\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 759--761 []\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e [146] Underfull \hbox (badness 10000) in paragraph at lines 761--763 []\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 763--765 []\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 765--767 []\T1/txtt/m/n/10 set_team_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Overfull \hbox (122.38219pt too wide) in paragraph at lines 767--769 []\T1/txtt/m/n/10 spatial_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal 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(version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./institute-for-disease-modeling-emodpy-malaria.out) (./institute-for-disease-modeling-emodpy-malaria.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-emodpy-malaria.toc) [1] [2] [1] [2] Chapter 1. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4] Chapter 2. Overfull \hbox (57.31381pt too wide) in paragraph at lines 258--258 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| Underfull \hbox (badness 5274) in paragraph at lines 305--308 []\T1/qtm/m/n/10 Set ini-tial risk for low-medium trans-mis-sion set-tings per: [][]$https : / / wiki . idmod . org / display / MAL / [5] Overfull \hbox (20.56392pt too wide) in paragraph at lines 413--413 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| [6] Overfull \hbox (35.49402pt too wide) in paragraph at lines 457--457 \T1/qtm/m/it/10 pop_filename_out=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 spatial_grid ded_pop_dir\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 733--736 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 743--747 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 743--747 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [10] Underfull \hbox (badness 10000) in paragraph at lines 878--881 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [11] Underfull \hbox (badness 10000) in paragraph at lines 888--892 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 888--892 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [12] Overfull \hbox (27.94388pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (8.55386pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (4.09389pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 out_on_first_occurrence: [13] Underfull \hbox (badness 10000) in paragraph at lines 1026--1029 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1036--1039 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [14] Underfull \hbox (badness 10000) in paragraph at lines 1129--1132 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1139--1142 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (31.3137pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (29.93373pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (61.05371pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (9.43373pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (11.09373pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (2.46371pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 get_gender: Overfull \hbox (6.86372pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 tial_amount: Overfull \hbox (42.41373pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 amount_in_shipment: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (59.27374pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 days_between_shipments: Overfull \hbox (11.68375pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 3.40282e+38\T1/qtm/m/n/10 , Overfull \hbox (3.82375pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 tion_config: Overfull \hbox (1.05374pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 tional[][][any] Overfull \hbox (60.84373pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 max_distributed_per_day: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (0.53372pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 max_stock: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (2.71375pt too wide) in paragraph at lines 1186--1186 \T1/qtm/m/it/10 ing_period: [15] [16] Overfull \vbox (11.56755pt too high) has occurred while \output is active [17] Underfull \hbox (badness 10000) in paragraph at lines 1219--1222 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [18] Underfull \hbox (badness 10000) in paragraph at lines 1331--1336 []\T1/txtt/bx/n/10 diagnostic_type \T1/qtm/m/n/10 ^^U Type of malaria di-ag-nos -tic used. De-fault is [19] Underfull \hbox (badness 10000) in paragraph at lines 1387--1391 []\T1/qtm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1415--1418 []\T1/txtt/bx/n/10 measurement_sensitivity \T1/qtm/m/n/10 ^^U Set-ting for \T1/ qtm/b/n/10 Mea-sure-ment_Sensitivity \T1/qtm/m/n/10 in Underfull \hbox (badness 10000) in paragraph at lines 1444--1450 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v id-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1444--1450 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 1444--1450 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1452--1457 []\T1/txtt/bx/n/10 disqualifying_properties \T1/qtm/m/n/10 ^^U List of In-di-vi d-u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1452--1457 \T1/qtm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For Underfull \hbox (badness 10000) in paragraph at lines 1452--1457 \T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu e1"}, [20] Underfull \hbox (badness 10000) in paragraph at lines 1480--1484 []\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 [{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop- Overfull \hbox (1.69395pt too wide) in paragraph at lines 1501--1501 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1532--1535 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [21] Underfull \hbox (badness 10000) in paragraph at lines 1542--1545 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [22] Overfull \hbox (72.89397pt too wide) in paragraph at lines 1666--1666 \T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received _Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [23] [24] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) Underfull \hbox (badness 10000) in paragraph at lines 1845--1851 []\T1/txtt/bx/n/10 ind_prop_restr_birthtrigger_event \T1/qtm/m/n/10 ^^U List of In-di-vid-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1845--1851 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to cre-ate trig-ger event f or the in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 1845--1851 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, Overfull \hbox (25.23418pt too wide) in paragraph at lines 1901--1901 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (54.63417pt too wide) in paragraph at lines 1901--1901 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [25] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1918--1918 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1918--1918 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1935--1935 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1935--1935 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Underfull \hbox (badness 10000) in paragraph at lines 1936--1940 []\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter- ven-tion to your cam-paign. See [26] Overfull \hbox (40.98413pt too wide) in paragraph at lines 1952--1952 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (70.38412pt too wide) in paragraph at lines 1952--1952 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Overfull \hbox (35.73415pt too wide) in paragraph at lines 1969--1969 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (65.13414pt too wide) in paragraph at lines 1969--1969 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 2110--2115 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v id-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 2110--2115 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 2110--2115 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, [29] Overfull \hbox (33.23386pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (13.84384pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (26.20386pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2235--2235 \T1/qtm/m/it/10 pelling_decay_time_constant: [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2272--2275 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2282--2285 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [32] Overfull \hbox (33.23386pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (13.84384pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (26.20386pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2359--2359 \T1/qtm/m/it/10 pelling_decay_time_constant: [33] Underfull \hbox (badness 10000) in paragraph at lines 2405--2408 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2415--2418 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [34] [35] Underfull \hbox (badness 10000) in paragraph at lines 2605--2608 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [36] Underfull \hbox (badness 10000) in paragraph at lines 2615--2618 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [37] Underfull \hbox (badness 10000) in paragraph at lines 2718--2721 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [38] Underfull \hbox (badness 10000) in paragraph at lines 2808--2811 []\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^ PTEM-PO-RARY_RAINFALL^^Q, ^^PWA- Underfull \hbox (badness 10000) in paragraph at lines 2808--2811 \T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- [39] Overfull \hbox (54.1938pt too wide) in paragraph at lines 2916--2916 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (1.7138pt too wide) in paragraph at lines 2916--2916 \T1/qtm/m/it/10 leased_infectious: Overfull \hbox (19.54382pt too wide) in paragraph at lines 2916--2916 \T1/qtm/m/it/10 leased_microsporidia: [40] Underfull \hbox (badness 10000) in paragraph at lines 2937--2940 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 7576) in paragraph at lines 2953--2955 []\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t o re-lease, sets Re-leased_Type = [41] Underfull \hbox (badness 10000) in paragraph at lines 2964--2967 []\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec- tors re-leased that Underfull \hbox (badness 10000) in paragraph at lines 2964--2967 \T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.29498pt too wide) in paragraph at lines 2964--2967 \T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' [42] Underfull \hbox (badness 10000) in paragraph at lines 3060--3063 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3070--3073 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (12.19392pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (14.34396pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (79.13393pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (118.29388pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Overfull \hbox (74.29391pt too wide) in paragraph at lines 3123--3123 \T1/qtm/m/it/10 hrp_allele_frequencies_per_genome_location: [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3156--3159 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3166--3169 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 3207--3213 []\T1/txtt/bx/n/10 drug_resistant_string \T1/qtm/m/n/10 ^^U Used with `BAR-CODE _STRING' or `NU- Underfull \hbox (badness 10000) in paragraph at lines 3228--3234 []\T1/txtt/bx/n/10 barcode_allele_frequencies_per_genome_location \T1/qtm/m/n/1 0 ^^U Used with `AL- [45] Underfull \hbox (badness 10000) in paragraph at lines 3244--3249 []\T1/txtt/bx/n/10 hrp_allele_frequencies_per_genome_location \T1/qtm/m/n/10 ^^ U Used with `AL- Overfull \hbox (17.44391pt too wide) in paragraph at lines 3274--3274 \T1/qtm/m/it/10 timesteps_between_repetitions: [46] Underfull \hbox (badness 10000) in paragraph at lines 3307--3310 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3317--3320 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [47] Underfull \hbox (badness 10000) in paragraph at lines 3405--3408 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3415--3418 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [48] Overfull \hbox (59.44379pt too wide) in paragraph at lines 3505--3505 \T1/qtm/m/it/10 timesteps_between_repetitions: [49] Overfull \hbox (69.94376pt too wide) in paragraph at lines 3582--3582 \T1/qtm/m/it/10 timesteps_between_repetitions: [50] Underfull \hbox (badness 10000) in paragraph at lines 3616--3619 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Overfull \hbox (33.19386pt too wide) in paragraph at lines 3641--3641 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (26.16386pt too wide) in paragraph at lines 3641--3641 \T1/qtm/m/it/10 killing_decay_time_constant: Underfull \hbox (badness 10000) in paragraph at lines 3657--3660 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3775--3778 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [53] Overfull \hbox (5.13391pt too wide) in paragraph at lines 3877--3877 \T1/qtm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 3883--3892 []\T1/qtm/m/n/10 tar-gets is a list of dic-tio-nar-ies defin-ing the trig-ger e vent and cov-er-age for and prop-er- Underfull \hbox (badness 10000) in paragraph at lines 3883--3892 \T1/qtm/m/n/10 ties of in-di-vid-u-als to tar-get with the in-ter-ven-tion with all pos-si-ble op-tions be-ing: [{^^Ptrig- Underfull \hbox (badness 7685) in paragraph at lines 3883--3892 \T1/qtm/m/n/10 ger^^Q:^^QNewClinicalCase^^Q,^^Qcoverage^^Q:0.8,^^Qagemin^^Q:15, ^^Qagemax^^Q:70, ^^Prate^^Q:0.3}] ^^Prate^^Q is the in-verse of [54] Underfull \hbox (badness 10000) in paragraph at lines 3936--3938 []\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h ave to receive the Underfull \hbox (badness 10000) in paragraph at lines 3936--3938 \T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi dualProperty1:PropertyValue1", Overfull \hbox (39.43362pt too wide) in paragraph at lines 3969--3969 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (84.11362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_num_individuals: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (39.17361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]int[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (51.43361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (53.09361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 125\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tar- Overfull \hbox (44.4636pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 get_gender: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (15.94359pt too wide) in paragraph at lines 3969--3969 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 All\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3969--3969 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3969--3969 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (91.64363pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 dont_allow_duplicates: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3969--3969 [][]\T1/qtm/m/it/10 bool[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 = Overfull \hbox (24.21361pt too wide) in paragraph at lines 3969--3969 \T1/qtm/m/it/10 False\T1/txtt/m/n/10 )| [55] [56] Overfull \vbox (1067.56755pt too high) has occurred while \output is active [57] Underfull \hbox (badness 6188) in paragraph at lines 3974--3979 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 4009--4012 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [58] [59] Overfull \hbox (39.43362pt too wide) in paragraph at lines 4189--4189 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 trig- Overfull \hbox (73.31358pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 trig- Overfull \hbox (93.44359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 gered_campaign_delay: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (46.39362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]float[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (10.27362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 lis- Overfull \hbox (12.89363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ten- Overfull \hbox (52.80362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (0.82362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 - Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tar- Overfull \hbox (51.43361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tar- Overfull \hbox (53.09361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 125\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tar- Overfull \hbox (44.4636pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 get_gender: Overfull \hbox (7.95361pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (15.94359pt too wide) in paragraph at lines 4189--4189 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 All\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 4189--4189 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 4189--4189 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (91.64363pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 dont_allow_duplicates: Overfull \hbox (15.27362pt too wide) in paragraph at lines 4189--4189 [][]\T1/qtm/m/it/10 bool[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 = Overfull \hbox (24.21361pt too wide) in paragraph at lines 4189--4189 \T1/qtm/m/it/10 False\T1/txtt/m/n/10 )| [60] Overfull \vbox (1207.56999pt too high) has occurred while \output is active [61] Underfull \hbox (badness 6188) in paragraph at lines 4194--4200 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 4225--4228 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [62] [63] Overfull \hbox (88.19377pt too wide) in paragraph at lines 4419--4419 \T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [64] Underfull \hbox (badness 10000) in paragraph at lines 4463--4466 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4473--4476 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [65] Underfull \hbox (badness 10000) in paragraph at lines 4586--4589 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4596--4599 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [66] [67] Overfull \hbox (31.91403pt too wide) in paragraph at lines 4783--4783 \T1/qtm/m/it/10 cific_genome_combinations_for_stratification: [68] Underfull \hbox (badness 5119) in paragraph at lines 4833--4840 \T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_ GENOME^^Q spe- [69] [70] [71] Overfull \hbox (2.92401pt too wide) in paragraph at lines 5157--5157 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [72] Overfull \hbox (6.20389pt too wide) in paragraph at lines 5230--5230 \T1/qtm/m/it/10 must_have_ip_key_value: Overfull \hbox (1.87387pt too wide) in paragraph at lines 5230--5230 \T1/qtm/m/it/10 must_have_intervention: Overfull \hbox (55.41386pt too wide) in paragraph at lines 5230--5230 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [73] [74] Underfull \hbox (badness 5119) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T emperature^^Q, ^^PBirths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 5353--5362 \T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [75] [76] [77] [78] [79] Overfull \hbox (4.70392pt too wide) in paragraph at lines 5909--5909 \T1/qtm/m/it/10 ify_by_clinical_symptoms: [80] Overfull \hbox (38.49373pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 drug_resistant_strings: Overfull \hbox (102.98372pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 drug_resistant_and_hrp_statistic_type: Overfull \hbox (156.42372pt too wide) in paragraph at lines 5955--5955 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m /it/10 '\T1/qtm/m/n/10 , Overfull \hbox (18.46376pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 ip_key_to_collect: Overfull \hbox (4.78375pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 ify_by_gender: Overfull \hbox (37.74379pt too wide) in paragraph at lines 5955--5955 \T1/qtm/m/it/10 clude_identity_by_xxx: [81] Overfull \hbox (5.15385pt too wide) in paragraph at lines 6061--6061 \T1/qtm/m/it/10 clude_microsporidia: [82] [83] Underfull \hbox (badness 7308) in paragraph at lines 6131--6133 []\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or ex-clude, de-pend-ing on value of [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6338--6341 \T1/qtm/m/n/10 im-plies one should get data on days Start_Day, Start_Day+Sampli ng_Period, [86] Underfull \hbox (badness 10000) in paragraph at lines 6515--6521 []\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma lar-i-a-Trans-mis-sion.csv) is a csv re- Underfull \hbox (badness 6592) in paragraph at lines 6515--6521 \T1/qtm/m/n/10 port that pro-vides data on malaria trans-mis-sion, by track-ing who trans-mit-ted malaria to whom. Underfull \hbox (badness 10000) in paragraph at lines 6515--6521 \T1/qtm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/qtm/b/n/10 Malaria_Model \T1/qtm/m/n/10 is set to Underfull \hbox (badness 5388) in paragraph at lines 6515--6521 \T1/qtm/m/n/10 MALARIA_MECHANISTIC_MODEL_WITH_CO_TRANSMISSION. This re-port is typ-i-cally used as [87] [88] [89] [90] Overfull \hbox (3.4238pt too wide) in paragraph at lines 6879--6879 \T1/qtm/m/it/10 ing.Optional[str] [91] [92] [93] Overfull \hbox (20.40494pt too wide) in paragraph at lines 7292--7295 [] [94] Underfull \hbox (badness 10000) in paragraph at lines 7398--7402 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [95] [96] Overfull \hbox (96.93362pt too wide) in paragraph at lines 7632--7632 []\T1/qtm/m/it/10 demographics_file_path: Overfull \hbox (10.45361pt too wide) in paragraph at lines 7632--7632 [][]\T1/qtm/m/it/10 str[][]\T1/qtm/m/n/10 , Overfull \hbox (30.57362pt too wide) in paragraph at lines 7632--7632 \T1/qtm/m/it/10 params: Overfull \hbox (10.45361pt too wide) in paragraph at lines 7632--7632 [][]\T1/qtm/m/it/10 str[][]\T1/qtm/m/n/10 , Overfull \hbox (24.4136pt too wide) in paragraph at lines 7632--7632 \T1/qtm/m/it/10 id_ref: Overfull \hbox (10.45361pt too wide) in paragraph at lines 7632--7632 [][]\T1/qtm/m/it/10 str[][]\T1/qtm/m/n/10 , Overfull \hbox (10.82362pt too wide) in paragraph at lines 7632--7632 \T1/qtm/m/it/10 mi- Overfull \hbox (14.26363pt too wide) in paragraph at lines 7632--7632 \T1/qtm/m/it/10 gra- Overfull \hbox (51.71361pt too wide) in paragraph at lines 7632--7632 \T1/qtm/m/it/10 tion_type=1\T1/txtt/m/n/10 ) Overfull \hbox (7.49364pt too wide) in paragraph at lines 7632--7632 \OMS/cmsy/m/n/10 !$ Overfull \hbox (275.86359pt too wide) in paragraph at lines 7632--7632 [][]\T1/qtm/m/it/10 emodpy_malaria.vector_migration.vector_migration.VectorMigr ation[][]| Overfull \hbox (8.51367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 graph- Overfull \hbox (24.79367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 ics_object\T1/qtm/m/n/10 , Overfull \hbox (2.95367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 grav- Overfull \hbox (29.82367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 ity_params: Overfull \hbox (33.21367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 tion_type=3\T1/qtm/m/n/10 , Overfull \hbox (6.73367pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 name: Overfull \hbox (23.32365pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 tional[][][[][]str[][]] Overfull \hbox (7.85365pt too wide) in paragraph at lines 7666--7666 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [97] [98] [99] Overfull \hbox (21.45433pt too wide) in paragraph at lines 7883--7883 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (11.94434pt too wide) in paragraph at lines 7883--7883 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me tadata.WeatherAttributes[][]\T1/qtm/m/it/10 ] Overfull \hbox (21.45433pt too wide) in paragraph at lines 7883--7883 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [100] Overfull \hbox (21.45433pt too wide) in paragraph at lines 7942--7942 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (21.45433pt too wide) in paragraph at lines 7942--7942 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (5.21489pt too wide) in paragraph at lines 7974--7977 [] [101] Overfull \hbox (93.15411pt too wide) in paragraph at lines 8017--8017 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me tadata.WeatherMetadata[][]\T1/qtm/m/it/10 ] [102] [103] [104] [105] Overfull \hbox (162.35397pt too wide) in paragraph at lines 8457--8457 \T1/qtm/m/it/10 tional[][][[][]Union[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weat her.weather_metadata.WeatherMetadata[][]\T1/qtm/m/it/10 , Overfull \hbox (109.32397pt too wide) in paragraph at lines 8457--8457 [][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_metadata.WeatherAttributes[][ ]\T1/qtm/m/it/10 , [106] Overfull \hbox (79.22398pt too wide) in paragraph at lines 8687--8687 \T1/qtm/m/it/10 tools_platform_comps.comps_platform.COMPSPlatform[][]]\T1/qtm/m /n/10 , [107] Overfull \hbox (94.95412pt too wide) in paragraph at lines 8810--8810 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (94.95412pt too wide) in paragraph at lines 8810--8810 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 9113--9117 []\T1/qtm/m/n/10 For ex-am-ple, air Underfull \hbox (badness 10000) in paragraph at lines 9113--9117 \T1/qtm/m/n/10 tem-per-a-ture could be rep-re-sented as: Weath-er-Vari-able.AIR _TEMPERATURE: Overfull \hbox (23.18442pt too wide) in paragraph at lines 9128--9128 \T1/qtm/m/it/10 tional[][][[][]List[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 ]] Overfull \hbox (20.21443pt too wide) in paragraph at lines 9128--9128 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [111] Overfull \hbox (21.12492pt too wide) in paragraph at lines 9156--9159 [] Underfull \hbox (badness 10000) in paragraph at lines 9156--9159 \T1/qtm/m/n/10 In this case low-er-case weather vari-able names are used, for e x-am-ple: [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9444--9447 []\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s im-u-la-tions Malaria_Model = Underfull \hbox (badness 6510) in paragraph at lines 9458--9460 []\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u es are ^^PFIXED_NEIGHBORHOOD^^Q, [114] Underfull \hbox (badness 10000) in paragraph at lines 9608--9612 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [115] Overfull \hbox (31.99455pt too wide) in paragraph at lines 9668--9671 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 9673--9676 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 9678--9681 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (4.75461pt too wide) in paragraph at lines 9683--9687 []\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi -crosporidia_Male_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 9689--9697 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9712--9720 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9712--9720 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [116] [117] [118] [119] [120] [121] [122] [123] Underfull \hbox (badness 10000) in paragraph at lines 10470--10474 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [124] Overfull \hbox (31.99455pt too wide) in paragraph at lines 10530--10533 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 10535--10538 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 10540--10543 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (4.75461pt too wide) in paragraph at lines 10545--10549 []\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi -crosporidia_Male_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 10551--10559 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 10574--10582 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 10574--10582 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [125] [126] Chapter 3. [127] [128] [129] Overfull \hbox (15.08487pt too wide) in paragraph at lines 10844--10846 \T1/qtm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/@idmod.org:@packages.idmod.org/api/pypi/pypi- [130] [131] [132] [133] [134] [135] [136] Overfull \hbox (19.37178pt too wide) in paragraph at lines 11193--11194 []\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 , Overfull \hbox (45.6217pt too wide) in paragraph at lines 11198--11199 []\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m /n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11201--11202 []\T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 , Overfull \hbox (14.1218pt too wide) in paragraph at lines 11206--11207 []\T1/txtt/m/n/10 emodpy_malaria.interventions.malaria_challenge\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 11207--11208 []\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 11209--11210 []\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 11210--11211 []\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 11211--11212 []\T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 , Overfull \hbox (14.1218pt too wide) in paragraph at lines 11213--11214 []\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 , Overfull \hbox (40.37172pt too wide) in paragraph at lines 11214--11215 []\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/ n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 11217--11218 []\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 11221--11222 []\T1/txtt/m/n/10 emodpy_malaria.serialization.replace_genomes\T1/qtm/m/n/10 , Overfull \hbox (92.87157pt too wide) in paragraph at lines 11222--11223 []\T1/txtt/m/n/10 emodpy_malaria.serialization.replace_genomes_get_next_barcode \T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 11223--11224 []\T1/txtt/m/n/10 emodpy_malaria.serialization.zero_infections\T1/qtm/m/n/10 , Overfull \hbox (24.62177pt too wide) in paragraph at lines 11226--11227 []\T1/txtt/m/n/10 emodpy_malaria.vector_migration.vector_migration\T1/qtm/m/n/1 0 , [137] (./institute-for-disease-modeling-emodpy-malaria.ind [138] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 8--10 \T1/qtm/m/it/10 emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 10--12 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/txtt/m/n/10 add_challenge_trial() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.59247pt too wide) in paragraph at lines 12--14 \T1/qtm/m/it/10 emodpy_malaria.interventions.malaria_challenge\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 14--16 []\T1/txtt/m/n/10 add_community_health_worker() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.96248pt too wide) in paragraph at lines 14--16 \T1/qtm/m/it/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m/n /10 ), Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/txtt/m/n/10 add_diagnostic_survey() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 16--18 \T1/qtm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/txtt/m/n/10 add_drug_campaign() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (4.22249pt too wide) in paragraph at lines 18--20 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/txtt/m/n/10 add_drug_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/txtt/m/n/10 add_drug_status_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/txtt/m/n/10 add_event_recorder() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/txtt/m/n/10 add_fMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 26--28 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/txtt/m/n/10 add_genes_and_alleles() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/txtt/m/n/10 add_habitat_reduction_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 30--32 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 add_human_migration_tracking() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 add_initial_vectors_per_species() Overfull \hbox (127.35252pt too wide) in paragraph at lines 34--36 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 add_initial_vectors_per_species_from_csv() Overfull \hbox (127.35252pt too wide) in paragraph at lines 36--38 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 add_IPTi() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 42--44 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 add_itn_scheduled() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/txtt/m/n/10 add_itn_triggered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 48--50 []\T1/txtt/m/n/10 add_larval_habitat_multiplier() Overfull \hbox (127.35252pt too wide) in paragraph at lines 48--50 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/txtt/m/n/10 add_larvicide() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 50--52 \T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/txtt/m/n/10 add_malaria_immunity_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/txtt/m/n/10 add_malaria_patient_json_report() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/txtt/m/n/10 add_malaria_summary_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 60--62 []\T1/txtt/m/n/10 add_malaria_survey_analyzer() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/txtt/m/n/10 add_MDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 62--64 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/txtt/m/n/10 add_MSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 68--70 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/txtt/m/n/10 add_mutation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/txtt/m/n/10 add_outbreak_individual() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 72--74 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 74--76 []\T1/txtt/m/n/10 add_outbreak_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/ 10 in mod-ule [139] Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/txtt/m/n/10 add_outbreak_malaria_var_genes() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/txtt/m/n/10 add_outdoorrestkill() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/txtt/m/n/10 add_report_event_counter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/txtt/m/n/10 add_report_fpg_output() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/txtt/m/n/10 add_report_intervention_pop_avg() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 88--90 []\T1/txtt/m/n/10 add_report_malaria_filtered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 90--92 []\T1/txtt/m/n/10 add_report_malaria_filtered_intrahost() \T1/qtm/m/n/10 (\T1/q tm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 add_report_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 94--96 []\T1/txtt/m/n/10 add_report_node_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 96--98 []\T1/txtt/m/n/10 add_report_node_demographics_malaria() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (16.87178pt too wide) in paragraph at lines 98--100 []\T1/txtt/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 add_report_simulation_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/txtt/m/n/10 add_report_vector_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 add_report_vector_migration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 add_report_vector_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/txtt/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/txtt/m/n/10 add_rfMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 110--112 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 add_rfMSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 112--114 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 114--116 []\T1/txtt/m/n/10 add_scale_larval_habitats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 114--116 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 116--118 []\T1/txtt/m/n/10 add_scheduled_antimalarial_drug() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 add_scheduled_input_eir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 118--120 \T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 add_scheduled_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 add_scheduled_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 122--124 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/txtt/m/n/10 add_scheduled_mosquito_release() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (5.84247pt too wide) in paragraph at lines 124--126 \T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/txtt/m/n/10 add_scheduled_space_spraying() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 126--128 \T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 add_scheduled_sugar_trap() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 128--130 \T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/txtt/m/n/10 add_scheduled_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 130--132 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 132--134 []\T1/txtt/m/n/10 add_scheduled_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 132--134 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/txtt/m/n/10 add_species_drivers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/txtt/m/n/10 add_sql_report_malaria() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/txtt/m/n/10 add_sql_report_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 146--147 []\T1/txtt/m/n/10 add_trait() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 147--149 []\T1/txtt/m/n/10 add_treatment_seeking() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (13.81248pt too wide) in paragraph at lines 147--149 \T1/qtm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 149--151 \T1/qtm/m/it/10 ule emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 151--153 []\T1/txtt/m/n/10 add_triggered_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 153--155 []\T1/txtt/m/n/10 add_triggered_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 153--155 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 155--157 []\T1/txtt/m/n/10 add_triggered_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 155--157 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 157--159 []\T1/txtt/m/n/10 add_triggered_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 157--159 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 159--161 []\T1/txtt/m/n/10 add_vector_habitat_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 161--163 []\T1/txtt/m/n/10 add_visualizations() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 163--165 []\T1/txtt/m/n/10 adherent_drug() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 163--165 \T1/qtm/m/it/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 ), [140] Overfull \hbox (100.74232pt too wide) in paragraph at lines 165--167 []\T1/txtt/m/n/10 AgesYears \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vect or_migration.vector_migration.VectorMigration Overfull \hbox (97.69139pt too wide) in paragraph at lines 167--169 []\T1/txtt/m/n/10 AIR_TEMPERATURE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_variable.WeatherVariable Underfull \hbox (badness 10000) in paragraph at lines 169--171 []\T1/txtt/m/n/10 all_vectors_if_none() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (79.26231pt too wide) in paragraph at lines 171--173 []\T1/txtt/m/n/10 attributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea 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paragraph at lines 189--191 []\T1/txtt/m/n/10 check_vectors() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (52.95236pt too wide) in paragraph at lines 191--193 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaImmunityReport Overfull \hbox (66.65236pt too wide) in paragraph at lines 193--195 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaPatientJSONReport Overfull \hbox (53.25237pt too wide) in paragraph at lines 195--197 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSummaryReport Overfull \hbox (73.90236pt too wide) in paragraph at lines 197--199 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (27.91235pt too wide) in paragraph at lines 199--201 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor 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paragraph at lines 243--245 []\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 245--247 []\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 247--249 []\T1/txtt/m/n/10 convert_char_to_int() Overfull \hbox (41.28249pt too wide) in paragraph at lines 247--249 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.serialization.replace_genomes.Ge nome Overfull \hbox (81.70226pt too wide) in paragraph at lines 249--251 []\T1/txtt/m/n/10 create_genome() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.serialization.replace_genomes.Genome Underfull \hbox (badness 10000) in paragraph at lines 251--252 []\T1/txtt/m/n/10 csv_to_weather() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (10.29239pt too wide) in paragraph at lines 255--257 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w 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(\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 439--441 []\T1/txtt/m/n/10 get_file_from_http() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 441--443 []\T1/txtt/m/n/10 get_next_barcode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (83.76248pt too wide) in paragraph at lines 441--443 \T1/qtm/m/it/10 emodpy_malaria.serialization.replace_genomes_get_next_barcode\T 1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 443--445 []\T1/txtt/m/n/10 get_next_genome() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.01746pt too wide) in paragraph at lines 443--445 \T1/qtm/m/it/10 emodpy_malaria.serialization.replace_genomes\T1/qtm/m/n/10 ), Overfull \hbox (147.99219pt too wide) in paragraph at lines 445--447 []\T1/txtt/m/n/10 get_node_offsets() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal aria.vector_migration.vector_migration.VectorMigration Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 449--451 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 454--456 []\T1/txtt/m/n/10 hash_series() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 454--456 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Overfull \hbox (44.95236pt too wide) in paragraph at lines 456--458 []\T1/txtt/m/n/10 hashcode \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.seria lization.replace_genomes.Genome Overfull \hbox (90.88228pt too wide) in paragraph at lines 461--463 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherAttributes Overfull \hbox (111.2423pt too wide) in paragraph at lines 463--465 []\T1/txtt/m/n/10 IdReference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.ve ctor_migration.vector_migration.VectorMigration Overfull \hbox (142.7422pt too wide) in paragraph at lines 465--467 []\T1/txtt/m/n/10 InterpolationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.vector_migration.vector_migration.VectorMigration Underfull \hbox (badness 10000) in paragraph at lines 467--469 []\T1/txtt/m/n/10 invert_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 467--469 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 469--471 []\T1/txtt/m/n/10 irs_configuration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (11.29236pt too wide) in paragraph at lines 471--473 []\T1/txtt/m/n/10 items() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weathe r.weather_set.WeatherSet Overfull \hbox (6.04237pt too wide) in paragraph at lines 476--478 []\T1/txtt/m/n/10 keys() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_set.WeatherSet [143] Overfull \hbox (102.94138pt too wide) in paragraph at lines 481--483 []\T1/txtt/m/n/10 LAND_TEMPERATURE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_variable.WeatherVariable Overfull \hbox (48.27238pt too wide) in paragraph at lines 483--485 []\T1/txtt/m/n/10 Layer \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emodpy_malaria .vector_migration.vector_migration\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 485--487 []\T1/txtt/m/n/10 LINEAR_INTERPOLATION Overfull \hbox (91.82246pt too wide) in paragraph at lines 485--487 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vector_migration.vector_migratio n.VectorMigration Overfull \hbox (50.44235pt too wide) in paragraph at lines 487--489 []\T1/txtt/m/n/10 list() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_variable.WeatherVariable Overfull \hbox (59.01228pt too wide) in paragraph at lines 489--491 []\T1/txtt/m/n/10 local_dir \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat her.weather_request.WeatherRequest Overfull \hbox (132.24141pt too wide) in paragraph at lines 491--493 []\T1/txtt/m/n/10 LOCAL_MIGRATION \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.vector_migration.vector_migration.VectorMigration Overfull \hbox (63.7922pt too wide) in paragraph at lines 496--498 []\T1/txtt/m/n/10 make_file_paths() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 498--500 []\T1/txtt/m/n/10 make_path() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 498--500 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 500--502 []\T1/txtt/m/n/10 MalariaDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (36.1975pt too wide) in paragraph at lines 500--502 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 502--504 []\T1/txtt/m/n/10 MalariaImmunityReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 504--506 []\T1/txtt/m/n/10 MalariaPatientJSONReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas s in Underfull \hbox (badness 10000) in paragraph at lines 506--508 []\T1/txtt/m/n/10 MalariaSummaryReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 508--510 []\T1/txtt/m/n/10 MalariaSurveyJSONAnalyzer \T1/qtm/m/n/10 (\T1/qtm/m/it/10 cla ss in Overfull \hbox (31.29233pt too wide) in paragraph at lines 510--512 []\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_data.WeatherData Underfull \hbox (badness 10000) in paragraph at lines 512--514 []\T1/txtt/m/n/10 metadata_defaults_dict() Overfull \hbox (66.21246pt too wide) in paragraph at lines 512--514 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[]\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather. weather_metadata.WeatherMetadata Overfull \hbox (89.76228pt too wide) in paragraph at lines 608--610 []\T1/txtt/m/n/10 offset_nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherMetadata Underfull \hbox (badness 10000) in paragraph at lines 610--612 []\T1/txtt/m/n/10 ONE_FOR_EACH_GENDER Overfull \hbox (91.82246pt too wide) in paragraph at lines 610--612 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vector_migration.vector_migratio n.VectorMigration Overfull \hbox (63.45233pt too wide) in paragraph at lines 615--617 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaImmunityReport Overfull \hbox (77.15233pt too wide) in paragraph at lines 617--619 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaPatientJSONReport Overfull \hbox (63.75233pt too wide) in paragraph at lines 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(\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportHumanMigrationTracking Overfull \hbox (80.23232pt too wide) in paragraph at lines 631--633 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportInfectionStatsMalaria Overfull \hbox (71.7423pt too wide) in paragraph at lines 633--635 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportInterventionPopAvg Overfull \hbox (57.1023pt too wide) in paragraph at lines 635--637 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportMalariaFiltered Overfull \hbox (95.64229pt too wide) in paragraph at lines 637--639 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportMalariaFilteredIntraHost Overfull \hbox (50.43233pt too wide) in paragraph at lines 639--641 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportMicrosporidia Overfull \hbox (72.19234pt too wide) in paragraph at lines 641--643 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographics Overfull \hbox (104.97234pt too wide) in paragraph at lines 643--645 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographicsMalaria Overfull \hbox (139.81235pt too wide) in paragraph at lines 645--647 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (105.7023pt too wide) in paragraph at lines 647--649 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportSimpleMalariaTransmission Overfull \hbox (55.54233pt too wide) in paragraph at lines 649--651 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportSimulationStats 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661--663 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.SqlReportMalaria [145] Overfull \hbox (73.30234pt too wide) in paragraph at lines 663--665 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.SqlReportMalariaGenetics Overfull \hbox (49.27232pt too wide) in paragraph at lines 665--667 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.VectorHabitatReport Underfull \hbox (badness 10000) in paragraph at lines 667--669 []\T1/txtt/m/n/10 parse_date() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 667--669 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Overfull \hbox (147.99136pt too wide) in paragraph at lines 669--671 []\T1/txtt/m/n/10 PIECEWISE_CONSTANT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal aria.vector_migration.vector_migration.VectorMigration Underfull \hbox (badness 10000) in paragraph at lines 671--673 []\T1/txtt/m/n/10 print_hashcodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.01746pt too wide) in paragraph at lines 671--673 \T1/qtm/m/it/10 emodpy_malaria.serialization.replace_genomes\T1/qtm/m/n/10 ), Overfull \hbox (80.38231pt too wide) in paragraph at lines 673--675 []\T1/txtt/m/n/10 provenance \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherAttributes Overfull \hbox (60.9415pt too wide) in paragraph at lines 678--680 []\T1/txtt/m/n/10 RAINFALL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_variable.WeatherVariable Overfull \hbox (147.99136pt too wide) in paragraph at lines 680--682 []\T1/txtt/m/n/10 REGIONAL_MIGRATION \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal aria.vector_migration.vector_migration.VectorMigration Overfull \hbox (108.19136pt too wide) in paragraph at lines 682--684 []\T1/txtt/m/n/10 RELATIVE_HUMIDITY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_variable.WeatherVariable Underfull \hbox (badness 10000) in paragraph at lines 684--686 []\T1/txtt/m/n/10 replace_genomes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.01746pt too wide) in paragraph at lines 684--686 \T1/qtm/m/it/10 emodpy_malaria.serialization.replace_genomes\T1/qtm/m/n/10 ), Overfull \hbox (43.26233pt too wide) in paragraph at lines 686--688 []\T1/txtt/m/n/10 report \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_request.WeatherRequest Underfull \hbox (badness 10000) in paragraph at lines 688--690 []\T1/txtt/m/n/10 ReportDrugStatus \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 690--692 []\T1/txtt/m/n/10 ReportEventCounter \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 694--696 []\T1/txtt/m/n/10 ReportHumanMigrationTracking \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 696--698 []\T1/txtt/m/n/10 ReportInfectionStatsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 c lass in Underfull \hbox (badness 10000) in paragraph at lines 698--700 []\T1/txtt/m/n/10 ReportInterventionPopAvg \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas s in Underfull \hbox (badness 10000) in paragraph at lines 700--702 []\T1/txtt/m/n/10 ReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/txtt/m/n/10 ReportMalariaFilteredIntraHost \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 class in Underfull \hbox (badness 10000) in paragraph at lines 704--706 []\T1/txtt/m/n/10 ReportMicrosporidia \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 706--708 []\T1/txtt/m/n/10 ReportNodeDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 708--710 []\T1/txtt/m/n/10 ReportNodeDemographicsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 712--714 []\T1/txtt/m/n/10 ReportSimpleMalariaTransmission \T1/qtm/m/n/10 (\T1/qtm/m/it/ 10 class in Underfull \hbox (badness 10000) in paragraph at lines 714--716 []\T1/txtt/m/n/10 ReportSimulationStats \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 716--718 []\T1/txtt/m/n/10 ReportVectorGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 718--720 []\T1/txtt/m/n/10 ReportVectorMigration \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 720--722 []\T1/txtt/m/n/10 ReportVectorStats \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 722--724 []\T1/txtt/m/n/10 ReportVectorStatsMalariaGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it /10 class in Underfull \hbox (badness 10000) in paragraph at lines 724--726 []\T1/txtt/m/n/10 RequestReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 724--726 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_request\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/txtt/m/n/10 required_metadata_defaults_dict() Overfull \hbox (66.21246pt too wide) in paragraph at lines 726--728 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather Attributes Underfull \hbox (badness 10000) in paragraph at lines 731--733 []\T1/txtt/m/n/10 SAME_FOR_BOTH_GENDERS Overfull \hbox (91.82246pt too wide) in paragraph at lines 731--733 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vector_migration.vector_migratio n.VectorMigration Underfull \hbox (badness 10000) in paragraph at lines 733--735 []\T1/txtt/m/n/10 save_json() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 733--735 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at 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aria.serialization.replace_genomes.Genome Underfull \hbox (badness 10000) in paragraph at lines 745--747 []\T1/txtt/m/n/10 set_drug_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 747--749 []\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 749--751 []\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 751--753 []\T1/txtt/m/n/10 set_parasite_genetics_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (167.7723pt too wide) in paragraph at lines 753--755 []\T1/txtt/m/n/10 set_risk_high() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.demographics.MalariaDemographics.MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 755--757 []\T1/txtt/m/n/10 set_risk_lowmedium() Overfull \hbox (127.35252pt too wide) in paragraph at lines 755--757 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 757--759 []\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 759--761 []\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e [146] Underfull \hbox (badness 10000) in paragraph at lines 761--763 []\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 763--765 []\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 765--767 []\T1/txtt/m/n/10 set_team_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Overfull \hbox (122.38219pt too wide) in paragraph at lines 767--769 []\T1/txtt/m/n/10 spatial_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal aria.weather.weather_metadata.WeatherAttributes Underfull \hbox (badness 10000) in paragraph at lines 769--771 []\T1/txtt/m/n/10 SpatialReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 771--773 []\T1/txtt/m/n/10 species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.16747pt too wide) in paragraph at lines 771--773 \T1/qtm/m/it/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 773--775 []\T1/txtt/m/n/10 SqlReportMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 775--777 []\T1/txtt/m/n/10 SqlReportMalariaGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas s in Overfull \hbox (55.58226pt too wide) in paragraph at lines 777--779 []\T1/txtt/m/n/10 step_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.DataFrameInfo Underfull \hbox (badness 10000) in paragraph at lines 782--784 []\T1/txtt/m/n/10 test_replace_genomes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Overfull \hbox (8.01746pt too wide) in paragraph at lines 782--784 \T1/qtm/m/it/10 emodpy_malaria.serialization.replace_genomes\T1/qtm/m/n/10 ), Overfull \hbox (31.29233pt too wide) in paragraph at lines 784--786 []\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_data.WeatherData Overfull \hbox (16.54234pt too wide) in paragraph at lines 786--788 []\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_set.WeatherSet Overfull \hbox (73.46234pt too wide) in paragraph at lines 788--790 []\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emodpy_ma laria.vector_migration.vector_migration\T1/qtm/m/n/10 ), Overfull \hbox (62.79224pt too wide) in paragraph at lines 790--792 []\T1/txtt/m/n/10 to_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria .weather.weather_data.WeatherData Overfull \hbox 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to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat her.weather_data.WeatherData Overfull \hbox (74.01233pt too wide) in paragraph at lines 804--806 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat her.weather_metadata.WeatherMetadata Overfull \hbox (27.04231pt too wide) in paragraph at lines 806--808 []\T1/txtt/m/n/10 to_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Overfull \hbox (74.4924pt too wide) in paragraph at lines 808--810 []\T1/txtt/m/n/10 Tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.vector_mi gration.vector_migration.VectorMigration Overfull \hbox (48.8824pt too wide) in paragraph at lines 810--812 []\T1/txtt/m/n/10 tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w eather_metadata.WeatherAttributes Overfull \hbox (116.0122pt too wide) in paragraph at lines 812--814 []\T1/txtt/m/n/10 total_value_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_metadata.WeatherMetadata Overfull \hbox (69.88234pt too wide) in paragraph at lines 817--819 []\T1/txtt/m/n/10 update() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_metadata.WeatherAttributes Overfull \hbox (117.1322pt too wide) in paragraph at lines 819--821 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_metadata.WeatherAttributes Overfull \hbox (41.7923pt too wide) in paragraph at lines 824--826 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_data.WeatherData Overfull \hbox (80.38231pt too wide) in paragraph at lines 826--828 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherAttributes Overfull \hbox (79.26231pt too wide) in paragraph at lines 828--830 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherMetadata Overfull \hbox (51.64227pt too wide) in paragraph at lines 830--832 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_request.WeatherArgs Overfull \hbox (27.04231pt too wide) in paragraph at lines 832--834 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 834--836 []\T1/txtt/m/n/10 validate_str_value() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 834--836 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Overfull \hbox (102.9422pt too wide) in paragraph at lines 836--838 []\T1/txtt/m/n/10 validate_types() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_variable.WeatherVariable Overfull \hbox (60.83224pt too wide) in paragraph at lines 838--840 []\T1/txtt/m/n/10 value_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_data.DataFrameInfo 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[]\T1/txtt/m/n/10 weather_variables \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_request.DataSource Overfull \hbox (63.7922pt too wide) in paragraph at lines 854--856 []\T1/txtt/m/n/10 weather_variables \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 856--858 []\T1/txtt/m/n/10 WeatherArgs \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 856--858 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_request\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 858--860 []\T1/txtt/m/n/10 WeatherAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 858--860 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 860--862 []\T1/txtt/m/n/10 WeatherData \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 860--862 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_data\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 862--864 []\T1/txtt/m/n/10 WeatherMetadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 862--864 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ), [147] Underfull \hbox (badness 10000) in paragraph at lines 864--866 []\T1/txtt/m/n/10 WeatherRequest \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 864--866 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_request\T1/qtm/m/n/10 ), Overfull \hbox (16.7023pt too wide) in paragraph at lines 866--868 []\T1/txtt/m/n/10 WeatherSet \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emodpy_ma laria.weather.weather_set\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 868--870 []\T1/txtt/m/n/10 WeatherVariable \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 868--870 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_variable\T1/qtm/m/n/10 ), Overfull \hbox (5.75735pt too wide) in paragraph at lines 873--875 []\T1/txtt/m/n/10 ymd() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emodpy_malar ia.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 878--880 []\T1/txtt/m/n/10 zero_human_infections() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 878--880 \T1/qtm/m/it/10 emodpy_malaria.serialization.zero_infections\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 880--882 []\T1/txtt/m/n/10 zero_infection_path() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 880--882 \T1/qtm/m/it/10 emodpy_malaria.serialization.zero_infections\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/txtt/m/n/10 zero_infections() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 882--884 \T1/qtm/m/it/10 emodpy_malaria.serialization.zero_infections\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 884--886 []\T1/txtt/m/n/10 zero_vector_infections() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 884--886 \T1/qtm/m/it/10 emodpy_malaria.serialization.zero_infections\T1/qtm/m/n/10 ), [148]) (./institute-for-disease-modeling-emodpy-malaria.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r .enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (152 pages, 618011 bytes). 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