Read the Docs build information Build id: 169468 Project: d-wave-systems-dimod Version: latest Commit: c6088ab90546fc347d2b8dad45d4ecbe32b6a57a Date: 2018-12-20T19:52:30.277027Z State: finished Success: True [rtd-command-info] start-time: 2018-12-20T19:52:30.828366Z, end-time: 2018-12-20T19:52:30.834815Z, duration: 0, exit-code: 0 git remote set-url origin https://github.com/dwavesystems/dimod.git [rtd-command-info] start-time: 2018-12-20T19:52:30.893670Z, end-time: 2018-12-20T19:52:31.370134Z, duration: 0, exit-code: 0 git fetch --depth 50 --tags --prune --prune-tags From https://github.com/dwavesystems/dimod 54a79d8..c6088ab master -> origin/master [rtd-command-info] start-time: 2018-12-20T19:52:31.610404Z, end-time: 2018-12-20T19:52:31.642035Z, duration: 0, exit-code: 0 git checkout --force origin/master Previous HEAD position was 54a79d8 Merge pull request #331 from arcondello/feature/fix_variables HEAD is now at c6088ab Merge pull request #336 from arcondello/bug/embedding-out-of-range-biases [rtd-command-info] start-time: 2018-12-20T19:52:31.701130Z, end-time: 2018-12-20T19:52:31.708085Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2018-12-20T19:52:32.457702Z, end-time: 2018-12-20T19:52:34.070708Z, duration: 1, exit-code: 0 python2.7 -mvirtualenv --no-site-packages --no-download New python executable in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/bin/python2.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/bin/python Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2018-12-20T19:52:34.134724Z, end-time: 2018-12-20T19:52:36.563898Z, duration: 2, exit-code: 0 python pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/.cache/pip pip Collecting pip Using cached https://files.pythonhosted.org/packages/c2/d7/90f34cb0d83a6c5631cf71dfe64cc1054598c843a92b400e55675cc2ac37/pip-18.1-py2.py3-none-any.whl Installing collected packages: pip Found existing installation: pip 9.0.1 Uninstalling pip-9.0.1: Successfully uninstalled pip-9.0.1 Successfully installed pip-18.1 [rtd-command-info] start-time: 2018-12-20T19:52:36.623771Z, end-time: 2018-12-20T19:52:44.457643Z, duration: 7, exit-code: 0 python pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/.cache/pip Pygments==2.2.0 setuptools<40 docutils==0.13.1 mock==1.0.1 pillow==2.6.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.4.0 sphinx<1.8 sphinx-rtd-theme<0.5 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/home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages (from requests>=2.7.9->codecov->-r requirements.txt (line 16)) (2.8) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages (from requests>=2.7.9->codecov->-r requirements.txt (line 16)) (3.0.4) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages (from requests>=2.7.9->codecov->-r requirements.txt (line 16)) (2018.11.29) Installing collected packages: enum34, numpy, six, futures, functools32, jsonschema, decorator, networkx, python-dateutil, pandas, funcsigs, pbr, mock, cython, pymongo, coverage, codecov Found existing installation: six 1.12.0 Uninstalling six-1.12.0: Successfully uninstalled six-1.12.0 Found existing installation: mock 1.0.1 Uninstalling mock-1.0.1: Successfully uninstalled mock-1.0.1 Successfully installed codecov-2.0.15 coverage-4.5.2 cython-0.29.2 decorator-4.3.0 enum34-1.1.6 funcsigs-1.0.2 functools32-3.2.3.post2 futures-3.2.0 jsonschema-2.6.0 mock-2.0.0 networkx-2.0 numpy-1.15.0 pandas-0.23.4 pbr-5.1.1 pymongo-3.7.1 python-dateutil-2.7.5 six-1.11.0 [rtd-command-info] start-time: 2018-12-20T19:52:55.093626Z, end-time: 2018-12-20T19:52:58.885446Z, duration: 3, exit-code: 0 python setup.py install --force /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/local/lib/python2.7/site-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/checkouts/latest/dimod/roof_duality/_fix_variables.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling dimod/roof_duality/_fix_variables.pyx because it depends on /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/local/lib/python2.7/site-packages/Cython/Includes/libcpp/vector.pxd. [1/1] Cythonizing dimod/roof_duality/_fix_variables.pyx running install running bdist_egg running egg_info writing requirements to dimod.egg-info/requires.txt writing dimod.egg-info/PKG-INFO writing top-level names to dimod.egg-info/top_level.txt writing dependency_links to dimod.egg-info/dependency_links.txt reading manifest file 'dimod.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'dimod.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py copying dimod/embedding/transforms.py -> build/lib.linux-x86_64-2.7/dimod/embedding copying dimod/roof_duality/_fix_variables.cpp -> build/lib.linux-x86_64-2.7/dimod/roof_duality running build_ext building 'dimod.roof_duality._fix_variables' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Idimod/roof_duality/src/ -I/usr/include/python2.7 -c dimod/roof_duality/_fix_variables.cpp -o build/temp.linux-x86_64-2.7/dimod/roof_duality/_fix_variables.o cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Idimod/roof_duality/src/ -I/usr/include/python2.7 -c dimod/roof_duality/src/fix_variables.cpp -o build/temp.linux-x86_64-2.7/dimod/roof_duality/src/fix_variables.o cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ dimod/roof_duality/src/fix_variables.cpp:29:40: fatal error: boost/graph/graph_traits.hpp: No such file or directory compilation terminated. building c++ extensions failed, trying to build without running install running bdist_egg running egg_info writing requirements to dimod.egg-info/requires.txt writing dimod.egg-info/PKG-INFO writing top-level names to dimod.egg-info/top_level.txt writing dependency_links to dimod.egg-info/dependency_links.txt reading manifest file 'dimod.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'dimod.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/dimod copying build/lib.linux-x86_64-2.7/dimod/__init__.py -> build/bdist.linux-x86_64/egg/dimod creating build/bdist.linux-x86_64/egg/dimod/embedding copying build/lib.linux-x86_64-2.7/dimod/embedding/__init__.py -> build/bdist.linux-x86_64/egg/dimod/embedding copying build/lib.linux-x86_64-2.7/dimod/embedding/chain_breaks.py -> build/bdist.linux-x86_64/egg/dimod/embedding copying build/lib.linux-x86_64-2.7/dimod/embedding/transforms.py -> build/bdist.linux-x86_64/egg/dimod/embedding copying build/lib.linux-x86_64-2.7/dimod/embedding/utils.py -> build/bdist.linux-x86_64/egg/dimod/embedding creating build/bdist.linux-x86_64/egg/dimod/io copying build/lib.linux-x86_64-2.7/dimod/io/__init__.py -> build/bdist.linux-x86_64/egg/dimod/io copying build/lib.linux-x86_64-2.7/dimod/io/bson.py -> build/bdist.linux-x86_64/egg/dimod/io copying build/lib.linux-x86_64-2.7/dimod/io/json.py -> build/bdist.linux-x86_64/egg/dimod/io copying build/lib.linux-x86_64-2.7/dimod/io/bqm_json_schema.json -> build/bdist.linux-x86_64/egg/dimod/io copying build/lib.linux-x86_64-2.7/dimod/io/coo.py -> build/bdist.linux-x86_64/egg/dimod/io copying build/lib.linux-x86_64-2.7/dimod/io/sampleset_json_schema.json -> build/bdist.linux-x86_64/egg/dimod/io copying build/lib.linux-x86_64-2.7/dimod/binary_quadratic_model.py -> build/bdist.linux-x86_64/egg/dimod copying build/lib.linux-x86_64-2.7/dimod/variables.py -> build/bdist.linux-x86_64/egg/dimod copying build/lib.linux-x86_64-2.7/dimod/vartypes.py -> build/bdist.linux-x86_64/egg/dimod copying build/lib.linux-x86_64-2.7/dimod/meta.py -> build/bdist.linux-x86_64/egg/dimod copying build/lib.linux-x86_64-2.7/dimod/compatibility23.py -> build/bdist.linux-x86_64/egg/dimod creating build/bdist.linux-x86_64/egg/dimod/core copying build/lib.linux-x86_64-2.7/dimod/core/__init__.py -> build/bdist.linux-x86_64/egg/dimod/core copying build/lib.linux-x86_64-2.7/dimod/core/structured.py -> build/bdist.linux-x86_64/egg/dimod/core copying build/lib.linux-x86_64-2.7/dimod/core/composite.py -> build/bdist.linux-x86_64/egg/dimod/core copying build/lib.linux-x86_64-2.7/dimod/core/sampler.py -> build/bdist.linux-x86_64/egg/dimod/core copying build/lib.linux-x86_64-2.7/dimod/decorators.py -> build/bdist.linux-x86_64/egg/dimod copying build/lib.linux-x86_64-2.7/dimod/response.py -> build/bdist.linux-x86_64/egg/dimod copying build/lib.linux-x86_64-2.7/dimod/package_info.py -> build/bdist.linux-x86_64/egg/dimod copying build/lib.linux-x86_64-2.7/dimod/views.py -> build/bdist.linux-x86_64/egg/dimod creating build/bdist.linux-x86_64/egg/dimod/generators copying build/lib.linux-x86_64-2.7/dimod/generators/__init__.py -> build/bdist.linux-x86_64/egg/dimod/generators copying build/lib.linux-x86_64-2.7/dimod/generators/random.py -> build/bdist.linux-x86_64/egg/dimod/generators copying build/lib.linux-x86_64-2.7/dimod/generators/chimera.py -> build/bdist.linux-x86_64/egg/dimod/generators copying build/lib.linux-x86_64-2.7/dimod/generators/fcl.py -> build/bdist.linux-x86_64/egg/dimod/generators creating build/bdist.linux-x86_64/egg/dimod/testing copying build/lib.linux-x86_64-2.7/dimod/testing/__init__.py -> build/bdist.linux-x86_64/egg/dimod/testing copying build/lib.linux-x86_64-2.7/dimod/testing/asserts.py -> build/bdist.linux-x86_64/egg/dimod/testing creating build/bdist.linux-x86_64/egg/dimod/roof_duality copying build/lib.linux-x86_64-2.7/dimod/roof_duality/__init__.py -> build/bdist.linux-x86_64/egg/dimod/roof_duality copying build/lib.linux-x86_64-2.7/dimod/roof_duality/_fix_variables.cpp -> build/bdist.linux-x86_64/egg/dimod/roof_duality creating build/bdist.linux-x86_64/egg/dimod/roof_duality/src copying build/lib.linux-x86_64-2.7/dimod/roof_duality/src/fix_variables.cpp -> build/bdist.linux-x86_64/egg/dimod/roof_duality/src copying build/lib.linux-x86_64-2.7/dimod/roof_duality/src/fix_variables.hpp -> build/bdist.linux-x86_64/egg/dimod/roof_duality/src copying build/lib.linux-x86_64-2.7/dimod/roof_duality/src/compressed_matrix.hpp -> build/bdist.linux-x86_64/egg/dimod/roof_duality/src copying build/lib.linux-x86_64-2.7/dimod/roof_duality/_fix_variables.pyx -> build/bdist.linux-x86_64/egg/dimod/roof_duality copying build/lib.linux-x86_64-2.7/dimod/roof_duality/fix_variables.py -> build/bdist.linux-x86_64/egg/dimod/roof_duality copying build/lib.linux-x86_64-2.7/dimod/exceptions.py -> build/bdist.linux-x86_64/egg/dimod creating build/bdist.linux-x86_64/egg/dimod/reference copying build/lib.linux-x86_64-2.7/dimod/reference/__init__.py -> build/bdist.linux-x86_64/egg/dimod/reference creating build/bdist.linux-x86_64/egg/dimod/reference/composites copying build/lib.linux-x86_64-2.7/dimod/reference/composites/__init__.py -> build/bdist.linux-x86_64/egg/dimod/reference/composites copying build/lib.linux-x86_64-2.7/dimod/reference/composites/structure.py -> build/bdist.linux-x86_64/egg/dimod/reference/composites copying build/lib.linux-x86_64-2.7/dimod/reference/composites/spin_transform.py -> build/bdist.linux-x86_64/egg/dimod/reference/composites creating build/bdist.linux-x86_64/egg/dimod/reference/samplers copying build/lib.linux-x86_64-2.7/dimod/reference/samplers/__init__.py -> build/bdist.linux-x86_64/egg/dimod/reference/samplers copying build/lib.linux-x86_64-2.7/dimod/reference/samplers/exact_solver.py -> build/bdist.linux-x86_64/egg/dimod/reference/samplers copying build/lib.linux-x86_64-2.7/dimod/reference/samplers/simulated_annealing.py -> build/bdist.linux-x86_64/egg/dimod/reference/samplers copying build/lib.linux-x86_64-2.7/dimod/reference/samplers/random_sampler.py -> build/bdist.linux-x86_64/egg/dimod/reference/samplers copying build/lib.linux-x86_64-2.7/dimod/higherorder.py -> build/bdist.linux-x86_64/egg/dimod copying build/lib.linux-x86_64-2.7/dimod/sampleset.py -> build/bdist.linux-x86_64/egg/dimod copying build/lib.linux-x86_64-2.7/dimod/utilities.py -> build/bdist.linux-x86_64/egg/dimod byte-compiling build/bdist.linux-x86_64/egg/dimod/__init__.py to __init__.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/embedding/__init__.py to __init__.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/embedding/chain_breaks.py to chain_breaks.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/embedding/transforms.py to transforms.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/embedding/utils.py to utils.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/io/__init__.py to __init__.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/io/bson.py to bson.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/io/json.py to json.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/io/coo.py to coo.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/binary_quadratic_model.py to binary_quadratic_model.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/variables.py to variables.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/vartypes.py to vartypes.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/meta.py to meta.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/compatibility23.py to compatibility23.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/core/__init__.py to __init__.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/core/structured.py to structured.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/core/composite.py to composite.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/core/sampler.py to sampler.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/decorators.py to decorators.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/response.py to response.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/package_info.py to package_info.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/views.py to views.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/generators/__init__.py to __init__.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/generators/random.py to random.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/generators/chimera.py to chimera.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/generators/fcl.py to fcl.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/testing/__init__.py to __init__.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/testing/asserts.py to asserts.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/roof_duality/__init__.py to __init__.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/roof_duality/fix_variables.py to fix_variables.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/exceptions.py to exceptions.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/reference/__init__.py to __init__.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/reference/composites/__init__.py to __init__.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/reference/composites/structure.py to structure.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/reference/composites/spin_transform.py to spin_transform.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/reference/samplers/__init__.py to __init__.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/reference/samplers/exact_solver.py to exact_solver.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/reference/samplers/simulated_annealing.py to simulated_annealing.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/reference/samplers/random_sampler.py to random_sampler.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/higherorder.py to higherorder.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/sampleset.py to sampleset.pyc byte-compiling build/bdist.linux-x86_64/egg/dimod/utilities.py to utilities.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying dimod.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying dimod.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying dimod.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying dimod.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO copying dimod.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying dimod.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO creating 'dist/dimod-0.7.11-py2.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing dimod-0.7.11-py2.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages/dimod-0.7.11-py2.7.egg Extracting dimod-0.7.11-py2.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages Adding dimod 0.7.11 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages/dimod-0.7.11-py2.7.egg Processing dependencies for dimod==0.7.11 Searching for enum34==1.1.6 Best match: enum34 1.1.6 Adding enum34 1.1.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages Searching for futures==3.2.0 Best match: futures 3.2.0 Adding futures 3.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages Searching for jsonschema==2.6.0 Best match: jsonschema 2.6.0 Adding jsonschema 2.6.0 to easy-install.pth file Installing jsonschema script to /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages Searching for six==1.11.0 Best match: six 1.11.0 Adding six 1.11.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages Searching for numpy==1.15.0 Best match: numpy 1.15.0 Adding numpy 1.15.0 to easy-install.pth file Installing conv-template script to /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/bin Installing from-template script to /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/bin Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages Searching for functools32==3.2.3.post2 Best match: functools32 3.2.3.post2 Adding functools32 3.2.3.post2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/envs/latest/lib/python2.7/site-packages Finished processing dependencies for dimod==0.7.11 [rtd-command-info] start-time: 2018-12-20T19:52:59.465936Z, end-time: 2018-12-20T19:52:59.530812Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # import os import sys sys.path.insert(0, os.path.abspath('.')) sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__)))) # -- General configuration ------------------------------------------------ # import sphinx # if sphinx.__version__ # can check here # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autosummary', 'sphinx.ext.autodoc', 'sphinx.ext.coverage', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', 'sphinx.ext.mathjax', 'sphinx.ext.napoleon', 'sphinx.ext.todo', 'sphinx.ext.viewcode', ] autosummary_generate = True # templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # source_suffix = ['.rst'] # The master toctree document. master_doc = 'index' # General information about the project. project = u'dimod' copyright = u'2017, D-Wave Systems Inc' author = u'D-Wave Systems Inc' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # import dimod # The short X.Y version. version = dimod.__version__ # The full version, including alpha/beta/rc tags. release = dimod.__version__ # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None add_module_names = False # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True modindex_common_prefix = ['dimod.'] doctest_global_setup = """ from __future__ import print_function, division import dimod """ # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". # html_static_path = ['_static'] # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. htmlhelp_basename = 'dimoddoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'dimod.tex', u'dimod Documentation', u'D-Wave Systems Inc', 'manual'), ] # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'dimod', u'dimod Documentation', [author], 1) ] # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'dimod', u'dimod Documentation', author, 'dimod', 'One line description of project.', 'Miscellaneous'), ] # -- Options for Epub output ---------------------------------------------- # Bibliographic Dublin Core info. epub_title = project epub_author = author epub_publisher = author epub_copyright = copyright # The unique identifier of the text. This can be a ISBN number # or the project homepage. # # epub_identifier = '' # A unique identification for the text. # # epub_uid = '' # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'numpy': ('http://docs.scipy.org/doc/numpy/', None), 'bson': ('https://api.mongodb.com/python/current/', None), 'dimod': ('https://docs.ocean.dwavesys.com/projects/dimod/en/latest/', None), 'binarycsp': ('https://docs.ocean.dwavesys.com/projects/binarycsp/en/latest/', None), 'cloud-client': ('https://docs.ocean.dwavesys.com/projects/cloud-client/en/latest/', None), 'neal': ('https://docs.ocean.dwavesys.com/projects/neal/en/latest/', None), 'networkx': ('https://docs.ocean.dwavesys.com/projects/dwave-networkx/en/latest/', None), 'system': ('https://docs.ocean.dwavesys.com/projects/system/en/latest/', None), 'penaltymodel': ('https://docs.ocean.dwavesys.com/projects/penaltymodel/en/latest/', None), 'minorminer': ('https://docs.ocean.dwavesys.com/projects/minorminer/en/latest/', None), 'qbsolv': ('https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/', None), 'oceandocs': ('https://docs.ocean.dwavesys.com/en/latest/', None), 'sysdocs_gettingstarted': ('https://docs.dwavesys.com/docs/latest/', None)} ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. 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[autosummary] generating autosummary for: bibliography.rst, contributing.rst, dwave.rst, glossary.rst, index.rst, installation.rst, introduction.rst, leap.rst, license.rst, ocean.rst, ..., reference/index.rst, reference/minimize_energy/dimod.embedding.MinimizeEnergy.rst, reference/ref_samplers_composites.rst, reference/response.rst, reference/samplers.rst, reference/sampleset.rst, reference/testing.rst, reference/utilities.rst, reference/vartypes.rst, sysdocs.rst loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.dwavesys.com/docs/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/penaltymodel/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/dwave-networkx/en/latest/objects.inv... loading intersphinx inventory from https://api.mongodb.com/python/current/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/binarycsp/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/neal/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/system/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/minorminer/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/qbsolv/en/latest/objects.inv... loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/dimod/en/latest/objects.inv... loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv loading intersphinx inventory from https://docs.ocean.dwavesys.com/projects/cloud-client/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 120 source files that are out of date updating environment: 120 added, 0 changed, 0 removed reading sources... 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[rtd-command-info] start-time: 2018-12-20T19:53:12.074904Z, end-time: 2018-12-20T19:53:14.800755Z, duration: 2, exit-code: 0 python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.7.9 loading translations [en]... done making output directory... loading pickled environment... done [autosummary] generating autosummary for: bibliography.rst, contributing.rst, dwave.rst, glossary.rst, index.rst, installation.rst, introduction.rst, leap.rst, license.rst, ocean.rst, ..., reference/index.rst, reference/minimize_energy/dimod.embedding.MinimizeEnergy.rst, reference/ref_samplers_composites.rst, reference/response.rst, reference/samplers.rst, reference/sampleset.rst, reference/testing.rst, reference/utilities.rst, reference/vartypes.rst, sysdocs.rst building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 0 added, 4 changed, 0 removed reading sources... 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[rtd-command-info] start-time: 2018-12-20T19:53:14.897760Z, end-time: 2018-12-20T19:53:18.399129Z, duration: 3, exit-code: 0 python sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.7.9 loading translations [en]... done making output directory... loading pickled environment... done [autosummary] generating autosummary for: bibliography.rst, contributing.rst, dwave.rst, glossary.rst, index.rst, installation.rst, introduction.rst, leap.rst, license.rst, ocean.rst, ..., reference/index.rst, reference/minimize_energy/dimod.embedding.MinimizeEnergy.rst, reference/ref_samplers_composites.rst, reference/response.rst, reference/samplers.rst, reference/sampleset.rst, reference/testing.rst, reference/utilities.rst, reference/vartypes.rst, sysdocs.rst building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 4 changed, 0 removed reading sources... 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LaTeX Warning: Reference `reference/vartypes:module-dimod.vartypes' on page 97 undefined on input line 7829. [97] No file dimod.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. (./dimod.aux) Package rerunfilecheck Warning: File `dimod.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} < /usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb> Output written on dimod.pdf (101 pages, 541690 bytes). Transcript written on dimod.log. [rtd-command-info] start-time: 2018-12-20T19:53:20.221795Z, end-time: 2018-12-20T19:53:20.354126Z, duration: 0, exit-code: 0 makeindex -s python.ist dimod.idx This is makeindex, version 2.15 [TeX Live 2015] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file dimod.idx....done (160 entries accepted, 0 rejected). Sorting entries....done (1298 comparisons). Generating output file dimod.ind....done (226 lines written, 0 warnings). Output written in dimod.ind. Transcript written in dimod.ilg. [rtd-command-info] start-time: 2018-12-20T19:53:20.412926Z, end-time: 2018-12-20T19:53:21.947155Z, duration: 1, exit-code: 0 pdflatex -interaction=nonstopmode /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/checkouts/latest/docs/_build/latex/dimod.tex This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/checkout s/latest/docs/_build/latex/dimod.tex LaTeX2e <2016/02/01> Babel <3.9q> and hyphenation patterns for 81 language(s) loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [3] [4] Chapter 2. [5] [6] ! Package inputenc Error: Keyboard character used is undefined (inputenc) in inputencoding `utf8'. See the inputenc package documentation for explanation. Type H for immediate help. ... l.314 \(^^H f s=[s_1,...,s_N]\) corresponding to physical Ising spins, where ... [7] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 549--551 []|[][]\T1/pcr/m/sl/10 BinaryQuadraticModel[][] \T1/ptm/m/n/10 ^^U An in- Underfull \hbox (badness 10000) in paragraph at lines 549--551 \T1/ptm/m/n/10 stance of the QUBO model sub-class of the Underfull \hbox (badness 10000) in paragraph at lines 549--551 [][]\T1/pcr/m/sl/10 BinaryQuadraticModel[][] \T1/ptm/m/n/10 su-per-class, cor-r e- [10] [11] Underfull \hbox (badness 10000) in paragraph at lines 730--731 []|[][]\T1/pcr/m/sl/10 BinaryQuadraticModel.add_variable[][]\T1/ptm/m/n/10 (v, Underfull \hbox (badness 10000) in paragraph at lines 735--736 []|[][]\T1/pcr/m/sl/10 BinaryQuadraticModel. Underfull \hbox (badness 10000) in paragraph at lines 740--741 []|[][]\T1/pcr/m/sl/10 BinaryQuadraticModel. Underfull \hbox (badness 10000) in paragraph at lines 745--746 []|[][]\T1/pcr/m/sl/10 BinaryQuadraticModel. 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[93] [94] [95] [96] Overfull \hbox (18.6225pt too wide) in paragraph at lines 7811--7812 []\T1/pcr/m/n/10 dimod.reference.composites.spin_transform\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7812--7813 []\T1/pcr/m/n/10 dimod.reference.composites.structure\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7814--7815 []\T1/pcr/m/n/10 dimod.reference.samplers.exact_solver\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 7815--7816 []\T1/pcr/m/n/10 dimod.reference.samplers.random_sampler\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 7816--7817 []\T1/pcr/m/n/10 dimod.reference.samplers.simulated_annealing\T1/ptm/m/n/10 , [97] (./dimod.ind [98] Underfull \hbox (badness 10000) in paragraph at lines 10--11 []\T1/ptm/m/n/10 add_interactions_from() (Bi-na-ryQuadrat-ic-Model Underfull \hbox (badness 10000) in paragraph at lines 18--19 []\T1/ptm/m/n/10 assert_response_energies() (in mod-ule di- [99] Underfull \hbox (badness 10000) in paragraph at lines 94--95 []\T1/ptm/m/n/10 from_coo() (di-mod.BinaryQuadraticModel class Underfull \hbox (badness 10000) in paragraph at lines 97--98 []\T1/ptm/m/n/10 from_ising() (di-mod.BinaryQuadraticModel class Underfull \hbox (badness 10000) in paragraph at lines 98--99 []\T1/ptm/m/n/10 from_numpy_matrix() (di-mod.BinaryQuadraticModel Underfull \hbox (badness 10000) in paragraph at lines 99--100 []\T1/ptm/m/n/10 from_numpy_vectors() (di-mod.BinaryQuadraticModel Underfull \hbox (badness 10000) in paragraph at lines 100--101 []\T1/ptm/m/n/10 from_pandas_dataframe() (di- Underfull \hbox (badness 10000) in paragraph at lines 100--101 \T1/ptm/m/n/10 mod.BinaryQuadraticModel class method), Underfull \hbox (badness 10000) in paragraph at lines 101--102 []\T1/ptm/m/n/10 from_qubo() (di-mod.BinaryQuadraticModel class Underfull \hbox (badness 10000) in paragraph at lines 162--163 []\T1/ptm/m/n/10 remove_interactions_from() (Bi-na-ryQuadrat-ic-Model Underfull \hbox (badness 10000) in paragraph at lines 165--166 []\T1/ptm/m/n/10 remove_variables_from() (Bi-na-ryQuadrat-ic-Model Underfull \hbox (badness 10000) in paragraph at lines 184--185 []\T1/ptm/m/n/10 SimulatedAnnealingSampler (class in di- [100] Underfull \hbox (badness 10000) in paragraph at lines 189--190 []\T1/ptm/m/n/10 SpinReversalTransformComposite (class in di- Underfull \hbox (badness 10000) in paragraph at lines 192--193 []\T1/ptm/m/n/10 StructureComposite (class in di- [101]) (./dimod.aux) Package rerunfilecheck Warning: File `dimod.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} < /usr/share/texlive/texmf-dist/fonts/type1/urw/helvetic/uhvb8a.pfb> Output written on dimod.pdf (105 pages, 572228 bytes). Transcript written on dimod.log. [rtd-command-info] start-time: 2018-12-20T19:53:22.011824Z, end-time: 2018-12-20T19:53:22.079276Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/checkouts/latest/docs/_build/latex/dimod.pdf /home/docs/checkouts/readthedocs.org/user_builds/d-wave-systems-dimod/artifacts/latest/sphinx_pdf/d-wave-systems-dimod.pdf [rtd-command-info] start-time: 2018-12-20T19:53:22.140445Z, end-time: 2018-12-20T19:53:25.862547Z, duration: 3, exit-code: 0 python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.7.9 loading translations [en]... done making output directory... loading pickled environment... done [autosummary] generating autosummary for: bibliography.rst, contributing.rst, dwave.rst, glossary.rst, index.rst, installation.rst, introduction.rst, leap.rst, license.rst, ocean.rst, ..., reference/index.rst, reference/minimize_energy/dimod.embedding.MinimizeEnergy.rst, reference/ref_samplers_composites.rst, reference/response.rst, reference/samplers.rst, reference/sampleset.rst, reference/testing.rst, reference/utilities.rst, reference/vartypes.rst, sysdocs.rst building [mo]: targets for 0 po files that are out of date building [epub]: targets for 120 source files that are out of date updating environment: 0 added, 4 changed, 0 removed reading sources... 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