Read the Docs build information
Build id: 1661531
Project: institute-for-disease-modeling-phylomodels
Version: latest
Commit: a5a36a525a1e8519282f35a6a094e4e244098690
Date: 2023-08-15T16:38:54.689827Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2023-08-15T16:39:02.575228Z, end-time: 2023-08-15T16:39:07.419350Z, duration: 4, exit-code: 0
git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/phyloModels.git .
Cloning into '.'...
Warning: Permanently added 'github.com' (ED25519) to the list of known hosts.

[rtd-command-info] start-time: 2023-08-15T16:39:07.918028Z, end-time: 2023-08-15T16:39:08.083938Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: switching to 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at a5a36a5 Merge pull request #66 from InstituteforDiseaseModeling/rtd_system

[rtd-command-info] start-time: 2023-08-15T16:39:08.809773Z, end-time: 2023-08-15T16:39:08.868801Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-08-15T16:39:09.426712Z, end-time: 2023-08-15T16:39:09.542064Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# .readthedocs.yml
# Read the Docs configuration file
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details

# Required
version: 2

# Build documentation in the docs/ directory with Sphinx
sphinx:
  configuration: docs/conf.py
  fail_on_warning: false

# Build documentation with MkDocs
#mkdocs:
#  configuration: mkdocs.yml

# Optionally build your docs in additional formats such as PDF
formats:
  - htmlzip

# Optionally set the version of Python and requirements required to build your docs
python:
  version: 3.8
  install:
    - requirements: requirements.txt
    - method: setuptools
      path: .
    - requirements: docs/requirements.txt
    
# Optionally rank topics in search results, between -10 (lower) and 10 (higher).
# 0 is normal rank, not no rank

search:
  ranking:
    index.html: 3
    modules.html: 2

[rtd-command-info] start-time: 2023-08-15T16:39:11.741826Z, end-time: 2023-08-15T16:39:31.527862Z, duration: 19, exit-code: 0
python3.8 -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
Using base prefix '/home/docs/.pyenv/versions/3.8.6'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-phylomodels/envs/latest/bin/python3.8
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-phylomodels/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2023-08-15T16:39:31.830225Z, end-time: 2023-08-15T16:39:34.725914Z, duration: 2, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-phylomodels/envs/latest/lib/python3.8/site-packages (23.2.1)
Collecting setuptools<58.3.0
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Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 68.0.0
    Uninstalling setuptools-68.0.0:
      Successfully uninstalled setuptools-68.0.0
Successfully installed setuptools-58.2.0

[rtd-command-info] start-time: 2023-08-15T16:39:35.063306Z, end-time: 2023-08-15T16:39:48.892381Z, duration: 13, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx sphinx-rtd-theme readthedocs-sphinx-ext<2.3
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple
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Building wheels for collected packages: mock
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=997b4c976ee28716cda3b5ad15a7d8aebe82c24c20601e6202d7d6fcd3ff952e
  Stored in directory: /tmp/pip-ephem-wheel-cache-ikrlnxng/wheels/29/8b/34/0bfba46dfc73a9065eed53bca787117321a9fec0d98cb8c7d2
Successfully built mock
Installing collected packages: snowballstemmer, pytz, mock, commonmark, zipp, urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, importlib-metadata, sphinx, readthedocs-sphinx-ext, sphinxcontrib-jquery, recommonmark, sphinx-rtd-theme
Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.3 Pygments-2.16.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.7.22 charset-normalizer-3.2.0 commonmark-0.9.1 docutils-0.18.1 idna-3.4 imagesize-1.4.1 importlib-metadata-6.8.0 mock-1.0.1 packaging-23.1 pillow-10.0.0 pytz-2023.3 readthedocs-sphinx-ext-2.2.2 recommonmark-0.5.0 requests-2.31.0 snowballstemmer-2.2.0 sphinx-6.2.1 sphinx-rtd-theme-1.2.2 sphinxcontrib-applehelp-1.0.4 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.1 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 urllib3-2.0.4 zipp-3.16.2