Read the Docs build information Build id: 1651665 Project: institute-for-disease-modeling-emod-api Version: latest Commit: fd45153c2492ee2000d0faa0c8667f70f03ad342 Date: 2023-08-09T20:52:03.451081Z State: finished Success: True [rtd-command-info] start-time: 2023-08-09T20:52:07.399515Z, end-time: 2023-08-09T20:52:10.205357Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com' (ED25519) to the list of known hosts. [rtd-command-info] start-time: 2023-08-09T20:52:10.464391Z, end-time: 2023-08-09T20:52:10.551256Z, duration: 0, exit-code: 0 cat .readthedocs.yml # .readthedocs.yml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py fail_on_warning: true # Build documentation with MkDocs #mkdocs: # configuration: mkdocs.yml # Optionally build your docs in additional formats such as PDF formats: - htmlzip - pdf # Optionally set the version of Python and requirements required to build your docs python: version: 3.7 install: - requirements: requirements.txt - requirements: docs/requirements.txt - method: setuptools path: . system_packages: true # Optionally rank topics in search results, between -10 (lower) and 10 (higher). # 0 is normal rank, not no rank # search: # ranking: [rtd-command-info] start-time: 2023-08-09T20:52:12.133880Z, end-time: 2023-08-09T20:52:18.124813Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv --system-site-packages $READTHEDOCS_VIRTUALENV_PATH Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2023-08-09T20:52:18.345341Z, end-time: 2023-08-09T20:52:20.443576Z, duration: 2, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (23.2.1) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 25.2 MB/s eta 0:00:00 Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 68.0.0 Uninstalling setuptools-68.0.0: Successfully uninstalled setuptools-68.0.0 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2023-08-09T20:52:20.672265Z, end-time: 2023-08-09T20:52:29.504767Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I pillow==5.4.1 mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0 setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 29.1 MB/s eta 0:00:00 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 210.1 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl (13 kB) Collecting commonmark==0.9.1 Downloading commonmark-0.9.1-py2.py3-none-any.whl (51 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 51.1/51.1 kB 159.0 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babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.5.3 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. Successfully installed MarkupSafe-2.1.3 Pygments-2.16.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.7.22 charset-normalizer-3.2.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.1 pillow-5.4.1 pytz-2023.3 readthedocs-sphinx-ext-2.2.2 recommonmark-0.5.0 requests-2.31.0 setuptools-58.2.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.0.4 [rtd-command-info] start-time: 2023-08-09T20:52:29.783981Z, end-time: 2023-08-09T20:52:36.883921Z, duration: 7, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: numpy!=1.19.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.21.6) Collecting pyyaml (from -r requirements.txt (line 2)) Obtaining dependency information for pyyaml from https://files.pythonhosted.org/packages/d7/8f/db62b0df635b9008fe90aa68424e99cee05e68b398740c8a666a98455589/PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Requirement already satisfied: pandas in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 3)) (1.3.5) Requirement already satisfied: scipy in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (1.7.3) Collecting shapely (from -r requirements.txt (line 5)) Downloading shapely-2.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.3/2.3 MB 45.1 MB/s eta 0:00:00 Collecting pyproj (from -r requirements.txt (line 6)) Downloading pyproj-3.2.1-cp37-cp37m-manylinux2010_x86_64.whl (6.3 MB) 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docs/requirements.txt (line 1)) Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.1/9.1 MB 106.5 MB/s eta 0:00:00 Collecting sphinxcontrib-napoleon~=0.7 (from -r docs/requirements.txt (line 2)) Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=4.4.0 (from -r docs/requirements.txt (line 3)) Downloading Sphinx-4.4.0-py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 171.6 MB/s eta 0:00:00 Collecting plantweb~=1.2.1 (from -r docs/requirements.txt (line 4)) Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.16 (from -r docs/requirements.txt (line 5)) Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting sphinxext.remoteliteralinclude (from -r docs/requirements.txt (line 6)) Downloading sphinxext_remoteliteralinclude-0.4.0-py3-none-any.whl (6.4 kB) Collecting sphinx-copybutton~=0.4.0 (from -r 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MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (31 kB) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2023.3) Collecting zipp>=0.5 (from importlib-metadata>=4.4->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading zipp-3.15.0-py3-none-any.whl (6.8 kB) Requirement already satisfied: typing-extensions>=3.6.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from importlib-metadata>=4.4->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (4.5.0) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (3.2.0) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (3.4) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2.0.4) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2023.7.22) Downloading importlib_metadata-6.7.0-py3-none-any.whl (22 kB) Installing collected packages: zipp, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pockets, MarkupSafe, docutils, sphinxcontrib-napoleon, plantweb, Jinja2, importlib-metadata, sphinxext.remoteliteralinclude, sphinx, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton Attempting uninstall: MarkupSafe Found existing installation: MarkupSafe 2.1.3 Uninstalling MarkupSafe-2.1.3: Successfully uninstalled MarkupSafe-2.1.3 Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: Jinja2 Found existing installation: Jinja2 3.0.3 Uninstalling Jinja2-3.0.3: Successfully uninstalled Jinja2-3.0.3 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed Jinja2-2.11.3 MarkupSafe-2.0.1 docutils-0.16 importlib-metadata-6.7.0 plantweb-1.2.1 pockets-0.9.1 sphinx-4.4.0 sphinx-copybutton-0.4.0 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.4.0 zipp-3.15.0 [rtd-command-info] start-time: 2023-08-09T20:52:42.284074Z, end-time: 2023-08-09T20:52:43.274372Z, duration: 0, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' adding license file 'LICENSE' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/spatial_report.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/property_report_to_csv.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/peek_camp.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api copying emod_api/multidim_plotter.py -> build/lib/emod_api creating build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather creating build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/plot_icj_means.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/plot_prop_report.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/icj_to_csv.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/utils.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/PreDefinedDistributions.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/Updateable.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/PropertiesAndAttributes.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/plot_spat_means.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization creating build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config creating build/lib/emod_api/legacy copying emod_api/legacy/plotAllCharts.py -> build/lib/emod_api/legacy copying emod_api/legacy/__init__.py -> build/lib/emod_api/legacy creating build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl_viz.py -> build/lib/emod_api/interventions copying emod_api/interventions/migration.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/demographics/service copying emod_api/demographics/service/service.py -> build/lib/emod_api/demographics/service copying emod_api/demographics/service/__init__.py -> build/lib/emod_api/demographics/service copying emod_api/demographics/service/grid_construction.py -> build/lib/emod_api/demographics/service creating build/lib/emod_api/migration/client copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/test_properties_and_attributes.py -> build/lib/tests/unittests copying tests/unittests/test_version.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/property_report_to_csv.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/plot_icj_means.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/plot_prop_report.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/icj_to_csv.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/utils.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/peek_camp.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics creating build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/service.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PreDefinedDistributions.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Updateable.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PropertiesAndAttributes.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/plot_spat_means.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/legacy/plotAllCharts.py -> build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/legacy/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/multidim_plotter.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration creating build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl_viz.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/migration.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_properties_and_attributes.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/property_report_to_csv.py to property_report_to_csv.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_icj_means.py to plot_icj_means.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_prop_report.py to plot_prop_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/icj_to_csv.py to icj_to_csv.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/peek_camp.py to peek_camp.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/service.py to service.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/grid_construction.py to grid_construction.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PreDefinedDistributions.py to PreDefinedDistributions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Updateable.py to Updateable.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PropertiesAndAttributes.py to PropertiesAndAttributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/plot_spat_means.py to plot_spat_means.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/legacy/plotAllCharts.py to plotAllCharts.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/legacy/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/multidim_plotter.py to multidim_plotter.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl.py to ccdl.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl_viz.py to ccdl_viz.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_properties_and_attributes.py to test_properties_and_attributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-37: module references __file__ emod_api.spatialreports.__pycache__.__main__.cpython-37: module references __file__ examples.__pycache__.insetchart.cpython-37: module references __file__ examples.__pycache__.property_report_to_csv.cpython-37: module references __file__ examples.__pycache__.spatial_report.cpython-37: module references __file__ examples.__pycache__.weather_file.cpython-37: module references __file__ creating dist creating 'dist/emod_api-1.29.8-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.29.8-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.29.8-py3.7.egg Extracting emod_api-1.29.8-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Adding emod-api 1.29.8 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.29.8-py3.7.egg Processing dependencies for emod-api==1.29.8 Searching for matplotlib==3.5.3 Best match: matplotlib 3.5.3 Adding matplotlib 3.5.3 to easy-install.pth file Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for parse==1.19.1 Best match: parse 1.19.1 Adding parse 1.19.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for graphviz==0.20.1 Best match: graphviz 0.20.1 Adding graphviz 0.20.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for lz4==4.3.2 Best match: lz4 4.3.2 Adding lz4 4.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scikit-learn==1.0.2 Best match: scikit-learn 1.0.2 Adding scikit-learn 1.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for geographiclib==2.0 Best match: geographiclib 2.0 Adding geographiclib 2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.2.1 Best match: pyproj 3.2.1 Adding pyproj 3.2.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for shapely==2.0.1 Best match: shapely 2.0.1 Adding shapely 2.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scipy==1.7.3 Best match: scipy 1.7.3 scipy 1.7.3 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pandas==1.3.5 Best match: pandas 1.3.5 pandas 1.3.5 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for PyYAML==6.0.1 Best match: PyYAML 6.0.1 Adding PyYAML 6.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for numpy==1.21.6 Best match: numpy 1.21.6 numpy 1.21.6 is already the active version in easy-install.pth Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for fonttools==4.38.0 Best match: fonttools 4.38.0 fonttools 4.38.0 is already the active version in easy-install.pth Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pyparsing==3.0.9 Best match: pyparsing 3.0.9 pyparsing 3.0.9 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for kiwisolver==1.4.4 Best match: kiwisolver 1.4.4 kiwisolver 1.4.4 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 python-dateutil 2.8.2 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for packaging==23.1 Best match: packaging 23.1 Adding packaging 23.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for cycler==0.11.0 Best match: cycler 0.11.0 cycler 0.11.0 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for Pillow==9.5.0 Best match: Pillow 9.5.0 Adding Pillow 9.5.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for threadpoolctl==3.1.0 Best match: threadpoolctl 3.1.0 Adding threadpoolctl 3.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for joblib==1.3.2 Best match: joblib 1.3.2 Adding joblib 1.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for certifi==2023.7.22 Best match: certifi 2023.7.22 Adding certifi 2023.7.22 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pytz==2023.3 Best match: pytz 2023.3 Adding pytz 2023.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for typing-extensions==4.5.0 Best match: typing-extensions 4.5.0 typing-extensions 4.5.0 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Finished processing dependencies for emod-api==1.29.8 [rtd-command-info] start-time: 2023-08-09T20:52:48.279165Z, end-time: 2023-08-09T20:52:48.340546Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "emod-api" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ tags.add('emodapi') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude', 'sphinx.ext.viewcode' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emod-api' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} # This following legacy behavior will gradually be sliced out until its deprecated and removed. # Skipped for Sphinx 6+ # Skipped by internal Feature flag SKIP_SPHINX_HTML_THEME_PATH # Skipped by all new projects since SKIP_SPHINX_HTML_THEME_PATH's introduction (jan 2023) if ( using_rtd_theme and version_info < (6,0) and not False ): theme = importlib.import_module('sphinx_rtd_theme') if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] # Define websupport2_base_url and websupport2_static_url if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.29.6", "/en/v1.29.6/"), ("v1.28.5", "/en/v1.28.5/"), ("v1.28.1", "/en/v1.28.1/"), ("v1.27.4", "/en/v1.27.4/"), ("v1.27.1", "/en/v1.27.1/"), ("v1.26.1", "/en/v1.26.1/"), ("v1.25.1", "/en/v1.25.1/"), ("v1.24.11", "/en/v1.24.11/"), ("v1.24.8", "/en/v1.24.8/"), ("v1.24.1", "/en/v1.24.1/"), ("v1.23.2", "/en/v1.23.2/"), ("v1.23.1", "/en/v1.23.1/"), ("v1.22.11", "/en/v1.22.11/"), ("v1.22.10", "/en/v1.22.10/"), ("v1.22.9", "/en/v1.22.9/"), ("v1.22.1", "/en/v1.22.1/"), ("v1.22.0", "/en/v1.22.0/"), ("v1.21.1", "/en/v1.21.1/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.20.1", "/en/v1.20.1/"), ("v1.19.13", "/en/v1.19.13/"), ("v1.19.2", "/en/v1.19.2/"), ("v1.18.1", "/en/v1.18.1/"), ("v1.17.4", "/en/v1.17.4/"), ("v1.17.3", "/en/v1.17.3/"), ("v1.17.2", "/en/v1.17.2/"), ("v1.16.10", "/en/v1.16.10/"), ("v1.16.5", "/en/v1.16.5/"), ("v1.16.2", "/en/v1.16.2/"), ("v1.15.6", "/en/v1.15.6/"), ("v1.15.4", "/en/v1.15.4/"), ("v1.15.1", "/en/v1.15.1/"), ("v1.14.7", "/en/v1.14.7/"), ("v1.14.1", "/en/v1.14.1/"), ("v1.13.1", "/en/v1.13.1/"), ("v1.12.1", "/en/v1.12.1/"), ("v1.11.7", "/en/v1.11.7/"), ("v1.11.4", "/en/v1.11.4/"), ("v1.11.0", "/en/v1.11.0/"), ("v1.10.8", "/en/v1.10.8/"), ("v1.10.6", "/en/v1.10.6/"), ("v1.10.5", "/en/v1.10.5/"), ("v1.10.3", "/en/v1.10.3/"), ("v1.10.2", "/en/v1.10.2/"), ("v1.9.2", "/en/v1.9.2/"), ("v1.9.1", "/en/v1.9.1/"), ("v1.8.9", "/en/v1.8.9/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emod-api/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': '', 'analytics_code': 'G-SVDSQH04EM', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'G-SVDSQH04EM', 'global_analytics_code': 'UA-17997319-2', 'commit': 'fd45153c', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): for key in context: if key not in html_context: html_context[key] = context[key] else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/1651665/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2023-08-09T20:52:48.752989Z, end-time: 2023-08-09T20:53:25.824468Z, duration: 37, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 72 source files that are out of date updating environment: [new config] 72 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 2%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 5%] emod_api.channelreports.channels reading sources... [ 6%] emod_api.channelreports.icj_to_csv reading sources... [ 8%] emod_api.channelreports.plot_icj_means reading sources... [ 9%] emod_api.channelreports.plot_prop_report reading sources... [ 11%] emod_api.channelreports.utils reading sources... [ 12%] emod_api.config reading sources... [ 13%] emod_api.config.default_from_schema reading sources... [ 15%] emod_api.config.default_from_schema_no_validation reading sources... [ 16%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 19%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 22%] emod_api.config.from_poi_and_binary reading sources... [ 23%] emod_api.config.from_schema reading sources... [ 25%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 26%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 30%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 33%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 38%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 41%] emod_api.demographics.service reading sources... [ 43%] emod_api.demographics.service.grid_construction reading sources... 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[ 66%] emod_api.migration.migration reading sources... [ 68%] emod_api.multidim_plotter reading sources... [ 69%] emod_api.peek_camp reading sources... [ 70%] emod_api.schema reading sources... [ 72%] emod_api.schema.dtk_post_process_schema reading sources... [ 73%] emod_api.schema.get_schema reading sources... [ 75%] emod_api.schema_to_class reading sources... [ 76%] emod_api.serialization reading sources... [ 77%] emod_api.serialization.CensusAndModPop reading sources... [ 79%] emod_api.serialization.SerializedPopulation reading sources... [ 80%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 83%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.plot_spat_means reading sources... [ 87%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 90%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] faq reading sources... [ 94%] glossary reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [ 98%] modules reading sources... [100%] plotters looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 1%] emod_api writing output... [ 2%] emod_api.campaign writing output... [ 4%] emod_api.channelreports writing output... [ 5%] emod_api.channelreports.channels writing output... [ 6%] emod_api.channelreports.icj_to_csv writing output... [ 8%] emod_api.channelreports.plot_icj_means writing output... [ 9%] emod_api.channelreports.plot_prop_report writing output... [ 11%] emod_api.channelreports.utils writing output... [ 12%] emod_api.config writing output... [ 13%] emod_api.config.default_from_schema writing output... 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[ 36%] emod_api.demographics.PreDefinedDistributions writing output... [ 37%] emod_api.demographics.PropertiesAndAttributes writing output... [ 38%] emod_api.demographics.Updateable writing output... [ 40%] emod_api.demographics.demographics_utils writing output... [ 41%] emod_api.demographics.service writing output... [ 43%] emod_api.demographics.service.grid_construction writing output... [ 44%] emod_api.demographics.service.service writing output... [ 45%] emod_api.interventions writing output... [ 47%] emod_api.interventions.ccdl writing output... [ 48%] emod_api.interventions.ccdl_viz writing output... [ 50%] emod_api.interventions.common writing output... [ 51%] emod_api.interventions.import_pressure writing output... [ 52%] emod_api.interventions.migration writing output... [ 54%] emod_api.interventions.node_multiplier writing output... [ 55%] emod_api.interventions.outbreak writing output... [ 56%] emod_api.interventions.simple_vaccine writing output... 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[ 83%] emod_api.serialization.dtkFileUtility writing output... [ 84%] emod_api.spatialreports writing output... [ 86%] emod_api.spatialreports.plot_spat_means writing output... [ 87%] emod_api.spatialreports.spatial writing output... [ 88%] emod_api.tabularoutput writing output... [ 90%] emod_api.weather writing output... [ 91%] emod_api.weather.weather writing output... [ 93%] faq writing output... [ 94%] glossary writing output... [ 95%] index writing output... [ 97%] installation writing output... [ 98%] modules writing output... [100%] plotters generating indices... genindex py-modindex done highlighting module code... [ 2%] emod_api.campaign highlighting module code... [ 4%] emod_api.channelreports.channels highlighting module code... [ 6%] emod_api.channelreports.icj_to_csv highlighting module code... [ 8%] emod_api.channelreports.plot_icj_means highlighting module code... [ 10%] emod_api.channelreports.plot_prop_report highlighting module code... [ 12%] emod_api.channelreports.utils highlighting module code... [ 14%] emod_api.config.default_from_schema highlighting module code... [ 16%] emod_api.config.default_from_schema_no_validation highlighting module code... [ 18%] emod_api.config.dtk_post_process_adhocevents highlighting module code... [ 20%] emod_api.config.dtk_pre_process_adhocevents highlighting module code... [ 22%] emod_api.config.dtk_pre_process_w5ml highlighting module code... [ 24%] emod_api.config.from_overrides highlighting module code... [ 26%] emod_api.config.from_poi_and_binary highlighting module code... [ 28%] emod_api.config.from_schema highlighting module code... [ 30%] emod_api.config.schema_to_config highlighting module code... [ 32%] emod_api.demographics.BaseInputFile highlighting module code... [ 34%] emod_api.demographics.Demographics highlighting module code... [ 36%] emod_api.demographics.DemographicsGenerator highlighting module code... [ 38%] emod_api.demographics.DemographicsInputDataParsers highlighting module code... [ 40%] emod_api.demographics.DemographicsTemplates highlighting module code... [ 42%] emod_api.demographics.Node highlighting module code... [ 44%] emod_api.demographics.PreDefinedDistributions highlighting module code... [ 46%] emod_api.demographics.PropertiesAndAttributes highlighting module code... [ 48%] emod_api.demographics.Updateable highlighting module code... [ 51%] emod_api.demographics.demographics_utils highlighting module code... [ 53%] emod_api.demographics.service.grid_construction highlighting module code... [ 55%] emod_api.interventions.ccdl_viz highlighting module code... [ 57%] emod_api.interventions.common highlighting module code... [ 59%] emod_api.interventions.import_pressure highlighting module code... [ 61%] emod_api.interventions.migration highlighting module code... [ 63%] emod_api.interventions.node_multiplier highlighting module code... [ 65%] emod_api.interventions.outbreak highlighting module code... [ 67%] emod_api.interventions.simple_vaccine highlighting module code... [ 69%] emod_api.interventions.utils highlighting module code... [ 71%] emod_api.legacy.plotAllCharts highlighting module code... [ 73%] emod_api.migration.client.client highlighting module code... [ 75%] emod_api.migration.migration highlighting module code... [ 77%] emod_api.multidim_plotter highlighting module code... [ 79%] emod_api.peek_camp highlighting module code... [ 81%] emod_api.schema.dtk_post_process_schema highlighting module code... [ 83%] emod_api.schema.get_schema highlighting module code... [ 85%] emod_api.schema_to_class highlighting module code... [ 87%] emod_api.serialization.CensusAndModPop highlighting module code... [ 89%] emod_api.serialization.SerializedPopulation highlighting module code... [ 91%] emod_api.serialization.dtkFileSupport highlighting module code... [ 93%] emod_api.serialization.dtkFileTools highlighting module code... [ 95%] emod_api.spatialreports.plot_spat_means highlighting module code... [ 97%] emod_api.spatialreports.spatial highlighting module code... [100%] emod_api.weather.weather writing additional pages... search opensearch done copying images... [ 20%] images/fertility_over_time_doc.png copying images... [ 40%] images/sweep_plot.png copying images... [ 60%] images/spat_plot.png copying images... [ 80%] images/prop_plot.png copying images... [100%] images/colormap_plot.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in ../_readthedocs/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2023-08-09T20:53:26.166292Z, end-time: 2023-08-09T20:53:39.246677Z, duration: 13, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 72 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 2%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 5%] emod_api.channelreports.channels reading sources... [ 6%] emod_api.channelreports.icj_to_csv reading sources... [ 8%] emod_api.channelreports.plot_icj_means reading sources... [ 9%] emod_api.channelreports.plot_prop_report reading sources... [ 11%] emod_api.channelreports.utils reading sources... [ 12%] emod_api.config reading sources... [ 13%] emod_api.config.default_from_schema reading sources... [ 15%] emod_api.config.default_from_schema_no_validation reading sources... [ 16%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 19%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 22%] emod_api.config.from_poi_and_binary reading sources... [ 23%] emod_api.config.from_schema reading sources... [ 25%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 26%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 30%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 33%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 38%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 41%] emod_api.demographics.service reading sources... [ 43%] emod_api.demographics.service.grid_construction reading sources... [ 44%] emod_api.demographics.service.service reading sources... [ 45%] emod_api.interventions reading sources... [ 47%] emod_api.interventions.ccdl reading sources... [ 48%] emod_api.interventions.ccdl_viz reading sources... [ 50%] emod_api.interventions.common reading sources... [ 51%] emod_api.interventions.import_pressure reading sources... [ 52%] emod_api.interventions.migration reading sources... [ 54%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 58%] emod_api.interventions.utils reading sources... [ 59%] emod_api.legacy reading sources... [ 61%] emod_api.legacy.plotAllCharts no display found. Using non-interactive Agg backend reading sources... [ 62%] emod_api.migration reading sources... [ 63%] emod_api.migration.client reading sources... [ 65%] emod_api.migration.client.client reading sources... [ 66%] emod_api.migration.migration reading sources... [ 68%] emod_api.multidim_plotter reading sources... [ 69%] emod_api.peek_camp reading sources... [ 70%] emod_api.schema reading sources... [ 72%] emod_api.schema.dtk_post_process_schema reading sources... [ 73%] emod_api.schema.get_schema reading sources... [ 75%] emod_api.schema_to_class reading sources... [ 76%] emod_api.serialization reading sources... [ 77%] emod_api.serialization.CensusAndModPop reading sources... [ 79%] emod_api.serialization.SerializedPopulation reading sources... [ 80%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 83%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.plot_spat_means reading sources... [ 87%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 90%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] faq reading sources... [ 94%] glossary reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [ 98%] modules reading sources... [100%] plotters looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.channelreports.icj_to_csv emod_api.channelreports.plot_icj_means emod_api.channelreports.plot_prop_report emod_api.channelreports.utils emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.service emod_api.demographics.service.grid_construction emod_api.demographics.service.service emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.legacy emod_api.legacy.plotAllCharts emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.plot_spat_means emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.multidim_plotter emod_api.peek_camp emod_api.schema_to_class glossary plotters done writing... done writing additional files... opensearchdone copying images... [ 20%] images/fertility_over_time_doc.png copying images... [ 40%] images/sweep_plot.png copying images... [ 60%] images/spat_plot.png copying images... [ 80%] images/prop_plot.png copying images... [100%] images/colormap_plot.png copying static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in ../_readthedocs/htmlzip. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2023-08-09T20:53:40.470833Z, end-time: 2023-08-09T20:53:53.199879Z, duration: 12, exit-code: 0 python -m sphinx -T -E -b latex -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/pdf Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [new config] 72 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 2%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 5%] emod_api.channelreports.channels reading sources... [ 6%] emod_api.channelreports.icj_to_csv reading sources... [ 8%] emod_api.channelreports.plot_icj_means reading sources... [ 9%] emod_api.channelreports.plot_prop_report reading sources... [ 11%] emod_api.channelreports.utils reading sources... [ 12%] emod_api.config reading sources... [ 13%] emod_api.config.default_from_schema reading sources... [ 15%] emod_api.config.default_from_schema_no_validation reading sources... [ 16%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 19%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 22%] emod_api.config.from_poi_and_binary reading sources... [ 23%] emod_api.config.from_schema reading sources... [ 25%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 26%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 30%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 33%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 38%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 41%] emod_api.demographics.service reading sources... [ 43%] emod_api.demographics.service.grid_construction reading sources... [ 44%] emod_api.demographics.service.service reading sources... [ 45%] emod_api.interventions reading sources... [ 47%] emod_api.interventions.ccdl reading sources... [ 48%] emod_api.interventions.ccdl_viz reading sources... [ 50%] emod_api.interventions.common reading sources... [ 51%] emod_api.interventions.import_pressure reading sources... [ 52%] emod_api.interventions.migration reading sources... [ 54%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 58%] emod_api.interventions.utils reading sources... [ 59%] emod_api.legacy reading sources... [ 61%] emod_api.legacy.plotAllCharts no display found. Using non-interactive Agg backend reading sources... [ 62%] emod_api.migration reading sources... [ 63%] emod_api.migration.client reading sources... [ 65%] emod_api.migration.client.client reading sources... [ 66%] emod_api.migration.migration reading sources... [ 68%] emod_api.multidim_plotter reading sources... [ 69%] emod_api.peek_camp reading sources... [ 70%] emod_api.schema reading sources... [ 72%] emod_api.schema.dtk_post_process_schema reading sources... [ 73%] emod_api.schema.get_schema reading sources... [ 75%] emod_api.schema_to_class reading sources... [ 76%] emod_api.serialization reading sources... [ 77%] emod_api.serialization.CensusAndModPop reading sources... [ 79%] emod_api.serialization.SerializedPopulation reading sources... [ 80%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 83%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.plot_spat_means reading sources... [ 87%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 90%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] faq reading sources... [ 94%] glossary reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [ 98%] modules reading sources... [100%] plotters looking for now-outdated files... none found pickling environment... done checking consistency... done processing emod-api-docs.tex... index installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.channelreports.icj_to_csv emod_api.channelreports.plot_icj_means emod_api.channelreports.plot_prop_report emod_api.channelreports.utils emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.service emod_api.demographics.service.grid_construction emod_api.demographics.service.service emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.legacy emod_api.legacy.plotAllCharts emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.plot_spat_means emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.multidim_plotter emod_api.peek_camp emod_api.schema_to_class glossary plotters resolving references... done writing... done copying images... [ 20%] images/fertility_over_time_doc.png copying images... [ 40%] images/sweep_plot.png copying images... [ 60%] images/spat_plot.png copying images... [ 80%] images/prop_plot.png copying images... [100%] images/colormap_plot.png copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in ../_readthedocs/pdf. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/latest/_readthedocs/pdf/_static/searchtools.js [rtd-command-info] start-time: 2023-08-09T20:53:54.070251Z, end-time: 2023-08-09T20:53:54.130598Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2023-08-09T20:53:54.363969Z, end-time: 2023-08-09T20:54:00.729762Z, duration: 6, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emod-api -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emod-api-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] [1] [2] Chapter 1. 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[8] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [9] [10] [11] Underfull \hbox (badness 10000) in paragraph at lines 944--947 []\T1/qtm/m/n/10 con-fig = json.load(open(^^Pdefault_config.json^^Q), ob-ject_h ook=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (23.04372pt too wide) in paragraph at lines 953--953 []\T1/qtm/m/it/10 path_to_schema\T1/qtm/m/n/10 , Overfull \hbox (37.0137pt too wide) in paragraph at lines 953--953 \T1/qtm/m/it/10 schema_node=True\T1/qtm/m/n/10 , Overfull \hbox (13.74374pt too wide) in paragraph at lines 953--953 \T1/qtm/m/it/10 as_rod=False\T1/qtm/m/n/10 , Overfull \hbox (40.01373pt too wide) in paragraph at lines 953--953 \T1/qtm/m/it/10 put_filename=None\T1/txtt/m/n/10 )| Overfull \hbox (70.57379pt too wide) in paragraph at lines 968--968 \T1/qtm/m/it/10 put_filename=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 default_config.j son\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (13.51376pt too wide) in paragraph at lines 968--968 \T1/qtm/m/it/10 schema_node=True\T1/txtt/m/n/10 )| Overfull \hbox (53.72368pt too wide) in paragraph at lines 998--998 []\T1/qtm/m/it/10 config_path=None\T1/qtm/m/n/10 , Overfull \hbox (30.34369pt too wide) in paragraph at lines 998--998 \T1/qtm/m/it/10 set_fn=None\T1/qtm/m/n/10 , Overfull \hbox (19.35367pt too wide) in paragraph at lines 998--998 \T1/qtm/m/it/10 fig=None\T1/txtt/m/n/10 )| Overfull \hbox (36.61365pt too wide) in paragraph at lines 1033--1033 []\T1/qtm/m/it/10 config_path\T1/qtm/m/n/10 , Overfull \hbox (13.23366pt too wide) in paragraph at lines 1033--1033 \T1/qtm/m/it/10 set_fn\T1/qtm/m/n/10 , Overfull \hbox (4.76366pt too wide) in paragraph at lines 1033--1033 \T1/qtm/m/it/10 con- Overfull \hbox (42.7586pt too wide) in paragraph at lines 1033--1033 \T1/qtm/m/it/10 fig_out_path\T1/txtt/m/n/10 )| [12] [13] Underfull \hbox (badness 10000) in paragraph at lines 1226--1229 []\T1/qtm/m/n/10 builder = s2c.SchemaConfigBuilder( LaTeX Warning: Hyper reference `emod_api.config.from_schema:emod_api.config.fro m_schema.SchemaConfigBuilder' on page 14 undefined on input line 1251. 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LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4840 ...{CONST(ANT)}] \leavevmode\begin{itemize} [48] [49] [50] [51] Underfull \hbox (badness 10000) in paragraph at lines 5374--5378 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [52] [53] LaTeX Warning: Hyper reference `emod_api.migration.migration:emod_api.migration .migration.Migration' on page 54 undefined on input line 5674. Overfull \hbox (57.54393pt too wide) in paragraph at lines 5674--5674 \T1/qtm/m/it/10 emod_api.migration.migration.Migration| [54] [55] [56] [57] LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileSupport:emod_api. serialization.dtkFileSupport.SerialObject' on page 58 undefined on input line 6 104. 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[59] LaTeX Warning: Hyper reference `emod_api.spatialreports.spatial:emod_api.spatia lreports.spatial.SpatialNode' on page 60 undefined on input line 1. [60] [61] LaTeX Warning: Hyper reference `emod_api.weather.weather:emod_api.weather.weath er.Metadata' on page 62 undefined on input line 1. [62] LaTeX Warning: Hyper reference `emod_api.weather.weather:emod_api.weather.weath er.WeatherNode' on page 63 undefined on input line 1. Underfull \hbox (badness 6842) in paragraph at lines 6850--6853 []\T1/qtm/m/n/10 Set the (path to) the schema file. And re-set all cam-paign va ri-ables. This is es-sen-tially a [63] [64] [65] [66] Chapter 4. [67] [68] Chapter 5. [69] [70] Chapter 6. LaTeX Warning: Hyper reference `emod_api.channelreports.plot_icj_means:module-e mod_api.channelreports.plot_icj_means' on page 71 undefined on input line 7192. Underfull \hbox (badness 10000) in paragraph at lines 7206--7208 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_icj_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [[]t [71] [72 <./sweep_plot.png>] Chapter 7. LaTeX Warning: Hyper reference `emod_api.spatialreports.plot_spat_means:module- emod_api.spatialreports.plot_spat_means' on page 73 undefined on input line 724 4. Underfull \hbox (badness 10000) in paragraph at lines 7257--7259 []\T1/txtt/m/n/10 python []m emod_api.spatialreports.plot_spat_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [73] [74 <./spat_plot.png>] Chapter 8. Underfull \hbox (badness 10000) in paragraph at lines 7294--7296 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_prop_report.py [[]h] [[]c channelName] [[]p PRIMARY] [75] [76 <./prop_plot.png>] Chapter 9. LaTeX Warning: Hyper reference `emod_api.multidim_plotter:module-emod_api.multi dim_plotter' on page 77 undefined on input line 7357. 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LaTeX Warning: Reference `emod_api.weather.weather:module-emod_api.weather.weat her' on page 79 undefined on input line 7501. [79] No file institute-for-disease-modeling-emod-api.ind. (./institute-for-disease-modeling-emod-api.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-emod-api.o ut' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (83 pages, 192125 2 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emod-api.ind' from line 'No file institute-for-disease-modeling-emod-api.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: List of undefined refs and citations: Reference `emod_api.campaign:module-emod_api.campaign' on page 79 undefined on input line 7437 Reference `emod_api.channelreports.channels:module-emod_api.channelreports.channels' on page 79 undefined on input line 7439 Reference `emod_api.channelreports.icj_to_csv:module-emod_api.channelreports.icj_to_csv' on page 79 undefined on input line 7440 Reference `emod_api.channelreports.plot_icj_means:module-emod_api.channelreports.plot_icj_means' on page 79 undefined on input line 7441 Reference `emod_api.channelreports.plot_prop_report:module-emod_api.channelreports.plot_prop_report' on page 79 undefined on input line 7442 Reference `emod_api.channelreports.utils:module-emod_api.channelreports.utils' on page 79 undefined on input line 7443 Reference `emod_api.channelreports:module-emod_api.channelreports' on page 79 undefined on input line 7438 Reference `emod_api.config.default_from_schema:module-emod_api.config.default_from_schema' on page 79 undefined on input line 7445 Reference `emod_api.config.default_from_schema_no_validation:module-emod_api.config.default_from_schema_no_validation' on page 79 undefined on input line 7446 Reference `emod_api.config.dtk_post_process_adhocevents:module-emod_api.config.dtk_post_process_adhocevents' on page 79 undefined on input line 7447 Reference `emod_api.config.dtk_pre_process_adhocevents:module-emod_api.config.dtk_pre_process_adhocevents' on page 79 undefined on input line 7448 Reference `emod_api.config.dtk_pre_process_w5ml:module-emod_api.config.dtk_pre_process_w5ml' on page 79 undefined on input line 7449 Reference `emod_api.config.from_overrides:module-emod_api.config.from_overrides' on page 79 undefined on input line 7450 Reference `emod_api.config.from_poi_and_binary:module-emod_api.config.from_poi_and_binary' on page 79 undefined on input line 7451 Reference `emod_api.config.from_schema:module-emod_api.config.from_schema' on page 79 undefined on input line 7452 Reference `emod_api.config.schema_to_config:module-emod_api.config.schema_to_config' on page 79 undefined on input line 7453 Reference `emod_api.config:module-emod_api.config' on page 79 undefined on input line 7444 Reference `emod_api.demographics.BaseInputFile:module-emod_api.demographics.BaseInputFile' on page 79 undefined on input line 7455 Reference `emod_api.demographics.Demographics:module-emod_api.demographics.Demographics' on page 79 undefined on input line 7456 Reference `emod_api.demographics.DemographicsGenerator:module-emod_api.demographics.DemographicsGenerator' on page 79 undefined on input line 7458 Reference `emod_api.demographics.DemographicsInputDataParsers:module-emod_api.demographics.DemographicsInputDataParsers' on page 79 undefined 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7465 Reference `emod_api.demographics.service.service:module-emod_api.demographics.service.service' on page 79 undefined on input line 7466 Reference `emod_api.demographics.service:module-emod_api.demographics.service' on page 79 undefined on input line 7464 Reference `emod_api.demographics:module-emod_api.demographics' on page 79 undefined on input line 7454 Reference `emod_api.interventions.ccdl:module-emod_api.interventions.ccdl' on page 79 undefined on input line 7469 Reference `emod_api.interventions.ccdl_viz:module-emod_api.interventions.ccdl_viz' on page 79 undefined on input line 7470 Reference `emod_api.interventions.common:module-emod_api.interventions.common' on page 79 undefined on input line 7471 Reference `emod_api.interventions.import_pressure:module-emod_api.interventions.import_pressure' on page 79 undefined on input line 7472 Reference `emod_api.interventions.migration:module-emod_api.interventions.migration' on page 79 undefined on input line 7473 Reference `emod_api.interventions.node_multiplier:module-emod_api.interventions.node_multiplier' on page 79 undefined on input line 7474 Reference `emod_api.interventions.outbreak:module-emod_api.interventions.outbreak' on page 79 undefined on input line 7475 Reference `emod_api.interventions.simple_vaccine:module-emod_api.interventions.simple_vaccine' on page 79 undefined on input line 7476 Reference `emod_api.interventions.utils:module-emod_api.interventions.utils' on page 79 undefined on input line 7477 Reference `emod_api.interventions:module-emod_api.interventions' on page 79 undefined on input line 7468 Reference `emod_api.legacy.plotAllCharts:module-emod_api.legacy.plotAllCharts' on page 79 undefined on input line 7479 Reference `emod_api.legacy:module-emod_api.legacy' on page 79 undefined on input line 7478 Reference `emod_api.migration.client.client:module-emod_api.migration.client.client' on page 79 undefined on input line 7482 Reference `emod_api.migration.client:module-emod_api.migration.client' on page 79 undefined on input line 7481 Reference `emod_api.migration.migration:module-emod_api.migration.migration' on page 79 undefined on input line 7483 Reference `emod_api.migration:module-emod_api.migration' on page 79 undefined on input line 7480 Reference `emod_api.multidim_plotter:module-emod_api.multidim_plotter' on page 79 undefined on input line 7484 Reference `emod_api.peek_camp:module-emod_api.peek_camp' on page 79 undefined on input line 7485 Reference `emod_api.schema.dtk_post_process_schema:module-emod_api.schema.dtk_post_process_schema' on page 79 undefined on input line 7487 Reference `emod_api.schema.get_schema:module-emod_api.schema.get_schema' on page 79 undefined on input line 7488 Reference `emod_api.schema:module-emod_api.schema' on page 79 undefined on input line 7486 Reference `emod_api.schema_to_class:module-emod_api.schema_to_class' on page 79 undefined on input line 7489 Reference `emod_api.serialization.CensusAndModPop:module-emod_api.serialization.CensusAndModPop' on page 79 undefined on input line 7491 Reference `emod_api.serialization.SerializedPopulation:module-emod_api.serialization.SerializedPopulation' on page 79 undefined on input line 7495 Reference `emod_api.serialization.dtkFileSupport:module-emod_api.serialization.dtkFileSupport' on page 79 undefined on input line 7492 Reference `emod_api.serialization.dtkFileTools:module-emod_api.serialization.dtkFileTools' on page 79 undefined on input line 7493 Reference `emod_api.serialization.dtkFileUtility:module-emod_api.serialization.dtkFileUtility' on page 79 undefined on input line 7494 Reference `emod_api.serialization:module-emod_api.serialization' on page 79 undefined on input line 7490 Reference `emod_api.spatialreports.plot_spat_means:module-emod_api.spatialreports.plot_spat_means' on page 79 undefined on input line 7497 Reference `emod_api.spatialreports.spatial:module-emod_api.spatialreports.spatial' on page 79 undefined on input line 7498 Reference `emod_api.spatialreports:module-emod_api.spatialreports' on page 79 undefined on input line 7496 Reference `emod_api.tabularoutput:module-emod_api.tabularoutput' on page 79 undefined on input line 7499 Reference `emod_api.weather.weather:module-emod_api.weather.weather' on page 79 undefined on input line 7501 Reference `emod_api.weather:module-emod_api.weather' on page 79 undefined on input line 7500 Reference `emod_api:module-emod_api' on page 79 undefined on input line 7436 Latexmk: Summary of warnings: Latex failed to resolve 66 reference(s) Rule 'makeindex institute-for-disease-modeling-emod-api.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emod-api.idx' ------------ ------------ Running 'makeindex -s python.ist -o 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This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emod-api.idx....done (569 entries accepted, 0 rejected). Sorting entries.......done (5391 comparisons). Generating output file institute-for-disease-modeling-emod-api.ind....done (1063 lines written, 0 warnings). Output written in institute-for-disease-modeling-emod-api.ind. Transcript written in institute-for-disease-modeling-emod-api.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emod-api.aux' 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emod-api-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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paragraph at lines 2300--2300 \T1/qtm/m/it/10 res_in_arcsec=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 custom\TS1/qtm/ m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (35.91386pt too wide) in paragraph at lines 2300--2300 \T1/qtm/m/it/10 node_id_from_lat_long=False\T1/txtt/m/n/10 )| [23] Overfull \hbox (309.19406pt too wide) in paragraph at lines 2401--2401 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (281.34407pt too wide) in paragraph at lines 2401--2401 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox (9.76408pt too wide) in paragraph at lines 2401--2401 \T1/qtm/m/it/10 load_other_columns_as_attributes=False\T1/qtm/m/n/10 , [24] Overfull \hbox (282.94414pt too wide) in paragraph at lines 2480--2480 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (255.09415pt too wide) in paragraph at lines 2480--2480 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] [25] Overfull \hbox (34.91383pt too wide) in paragraph at lines 2568--2568 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (13.9139pt too wide) in paragraph at lines 2580--2580 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (34.55377pt too wide) in paragraph at lines 2586--2586 \T1/qtm/m/it/10 tra_data_columns=[]\T1/qtm/m/n/10 , Overfull \hbox (66.41374pt too wide) in paragraph at lines 2586--2586 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| [26] Underfull \hbox (badness 10000) in paragraph at lines 2665--2668 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 2695--2698 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 2718--2721 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [27] Overfull \hbox (43.13435pt too wide) in paragraph at lines 2889--2889 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualAttributes[][]\T1/qtm/m/it/10 ] Overfull \hbox (43.93436pt too wide) in paragraph at lines 2889--2889 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperties[][]\T1/qtm/m/it/10 ] Overfull \hbox (23.48436pt too wide) in paragraph at lines 2889--2889 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.NodeAttributes[][]\T1/qtm/m/it/10 ] [28] [29] Overfull \hbox (221.57382pt too wide) in paragraph at lines 3068--3068 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperty[][]\T1/qtm/m/it/10 ] Overfull \hbox (29.17384pt too wide) in paragraph at lines 3101--3101 []\T1/qtm/m/it/10 age_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 age_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 age_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (9.17384pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 age_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (36.28386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 lence_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 lence_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 lence_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 nity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 nity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 nity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 risk_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 risk_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 risk_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (89.17386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 tion_heterogeneity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 tion_heterogeneity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (29.62386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution_male=None\T1/qtm/m/n/10 , Overfull \hbox (36.54384pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution_female=None\T1/qtm/m/n/10 , Overfull \hbox (7.93384pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution=None\T1/txtt/m/n/10 )| [30] [31] Overfull \hbox (10.98395pt too wide) in paragraph at lines 3200--3200 \T1/qtm/m/it/10 tial_vectors_per_species=None\T1/qtm/m/n/10 , [32] [33] Underfull \hbox (badness 5578) in paragraph at lines 3419--3422 []\T1/qtm/m/n/10 Cre-ate a static de-mo-graph-ics based on the de-mo-graph-ics file spec-i-fied in the con-fig file of the [34] Overfull \hbox (5.21407pt too wide) in paragraph at lines 3589--3589 \T1/qtm/m/it/10 Node_Selection_Type=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 DISTANCE_ ONLY\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 3854--3856 []\T1/txtt/bx/n/10 IP. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Target_Property_Value. The value part of the new key[]value pair Underfull \hbox (badness 10000) in paragraph at lines 3866--3868 []\T1/txtt/bx/n/10 Target_Property_Value. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Dail y_Probability. The daily probability that Underfull \hbox (badness 10000) in paragraph at lines 3870--3872 []\T1/txtt/bx/n/10 Daily_Probability. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Maximum_ Duration. The maximum amount of time Underfull \hbox (badness 10000) in paragraph at lines 3870--3872 \T1/txtt/m/sl/10 individuals have to move to a new group. This timing works in Underfull \hbox (badness 10000) in paragraph at lines 3874--3876 []\T1/txtt/bx/n/10 group. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Revert. The number o f days before an individual moves back to Underfull \hbox (badness 10000) in paragraph at lines 3878--3880 []\T1/txtt/bx/n/10 policy. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Intervention_Name. Optional Intervention_Name. Useful if Underfull \hbox (badness 10000) in paragraph at lines 3886--3888 []\T1/txtt/bx/n/10 expired. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Event_Trigger_Expi red. Optional broadcast trigger to be [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 4193--4195 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is Overfull \hbox (2.75383pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 ip_targeting=None\T1/qtm/m/n/10 , Overfull \hbox (10.51382pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 get_age_max=45625\T1/qtm/m/n/10 , Overfull \hbox (29.36382pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 get_residents_only=False\T1/qtm/m/n/10 , Overfull \hbox (24.73378pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 check_at_trigger=False\T1/txtt/m/n/10 )| [41] Underfull \hbox (badness 10000) in paragraph at lines 4247--4249 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [42] [43] [44] [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 []\T1/qtm/m/n/10 {^^PDu-ra-tion_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DIST RIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 []\T1/qtm/m/n/10 {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTIO N^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 \T1/qtm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 \T1/qtm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- [47] Overfull \hbox (17.85501pt too wide) in paragraph at lines 4805--4810 \T1/qtm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (55.02502pt too wide) in paragraph at lines 4805--4810 \T1/qtm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4811--4817 []\T1/qtm/m/n/10 du-ra- ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4840 ...{CONST(ANT)}] \leavevmode\begin{itemize} [48] [49] [50] [51] Underfull \hbox (badness 10000) in paragraph at lines 5374--5378 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [52] [53] Overfull \hbox (57.54393pt too wide) in paragraph at lines 5674--5674 [][]\T1/qtm/m/it/10 emod_api.migration.migration.Migration[][]| [54] [55] [56] [57] [58] [59] [60] [61] [62] Underfull \hbox (badness 6842) in paragraph at lines 6850--6853 []\T1/qtm/m/n/10 Set the (path to) the schema file. And re-set all cam-paign va ri-ables. This is es-sen-tially a [63] [64] [65] [66] Chapter 4. [67] [68] Chapter 5. [69] [70] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 7206--7208 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_icj_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [[]t [71] [72 <./sweep_plot.png>] Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 7257--7259 []\T1/txtt/m/n/10 python []m emod_api.spatialreports.plot_spat_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [73] [74 <./spat_plot.png>] Chapter 8. Underfull \hbox (badness 10000) in paragraph at lines 7294--7296 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_prop_report.py [[]h] [[]c channelName] [[]p PRIMARY] [75] [76 <./prop_plot.png>] Chapter 9. [77] [78 <./colormap_plot.png>] Overfull \hbox (29.87175pt too wide) in paragraph at lines 7446--7447 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/ 10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 7447--7448 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7448--7449 []\T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7458--7459 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 7459--7460 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 7460--7461 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7462--7463 []\T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7463--7464 []\T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Overfull \hbox (19.37178pt too wide) in paragraph at lines 7465--7466 []\T1/txtt/m/n/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7495--7496 []\T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , [79] (./institute-for-disease-modeling-emod-api.ind [80] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/txtt/m/n/10 accumulate_channel_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (85.18242pt too wide) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.P ropertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/txtt/m/n/10 add_migration_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (137.68227pt too wide) in paragraph at lines 15--17 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (49.44226pt too wide) in paragraph at lines 17--19 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/txtt/m/n/10 AddAgeDependentTransmission() Overfull \hbox (33.46252pt too wide) in paragraph at lines 19--21 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/txtt/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (33.46252pt too wide) in paragraph at lines 21--23 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/txtt/m/n/10 AgeStructureUNWPP() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 23--25 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/txtt/m/n/10 AgesYears \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Overfull \hbox (31.54231pt too wide) in paragraph at lines 28--30 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Contents Overfull \hbox (26.68231pt too wide) in paragraph at lines 30--32 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.10747pt too wide) in paragraph at lines 32--34 \T1/qtm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 34--36 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (73.8823pt too wide) in paragraph at lines 40--42 []\T1/txtt/m/n/10 apply_overlay() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 apply_to_defaults_or_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 42--44 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 arcsec_to_deg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 44--46 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Overfull \hbox (51.92223pt too wide) in paragraph at lines 46--48 []\T1/txtt/m/n/10 as_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (30.00221pt too wide) in paragraph at lines 48--50 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Channel Overfull \hbox (26.10222pt too wide) in paragraph at lines 50--52 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/txtt/m/n/10 author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 63--65 []\T1/txtt/m/n/10 BaseInputFile \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 63--65 \T1/qtm/m/it/10 emod_api.demographics.BaseInputFile\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 65--66 []\T1/txtt/m/n/10 basicNode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 67--69 []\T1/txtt/m/n/10 BroadcastEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 69--71 []\T1/txtt/m/n/10 BroadcastEventToOtherNodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 72--74 []\T1/txtt/m/n/10 byte_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 call_plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [81] Underfull \hbox (badness 10000) in paragraph at lines 79--81 []\T1/txtt/m/n/10 change_individual_property() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 83--85 []\T1/txtt/m/n/10 change_individual_property_scheduled() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 85--87 []\T1/txtt/m/n/10 change_individual_property_triggered() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/txtt/m/n/10 change_ser_pop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 87--89 \T1/qtm/m/it/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 ), Overfull \hbox (46.67224pt too wide) in paragraph at lines 90--92 []\T1/txtt/m/n/10 channel_names \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channe lreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 ChannelReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (20.42232pt too wide) in paragraph at lines 94--96 []\T1/txtt/m/n/10 channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrepo rts.channels.ChannelReport Overfull \hbox (9.38226pt too wide) in paragraph at lines 96--98 []\T1/txtt/m/n/10 chunk_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 98--100 []\T1/txtt/m/n/10 chunk_sizes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 chunks \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/txtt/m/n/10 collect() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 102--104 \T1/qtm/m/it/10 emod_api.channelreports.plot_icj_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 collect() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 104--106 \T1/qtm/m/it/10 emod_api.spatialreports.plot_spat_means\T1/qtm/m/n/10 ), Overfull \hbox (29.63231pt too wide) in paragraph at lines 106--108 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.EllZeeFour Overfull \hbox (13.76231pt too wide) in paragraph at lines 108--110 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Snappy Overfull \hbox (43.15228pt too wide) in paragraph at lines 110--112 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 114--116 []\T1/txtt/m/n/10 compressed \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 116--118 []\T1/txtt/m/n/10 compression \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 ConstantDistribution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.58746pt too wide) in paragraph at lines 118--120 \T1/qtm/m/it/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 construct() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 120--122 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 ConstructNodesFromDataFrame() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 122--124 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (92.52237pt too wide) in paragraph at lines 124--126 []\T1/txtt/m/n/10 copy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. PreDefinedDistributions.ConstantDistribution Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Weather Overfull \hbox (58.51736pt too wide) in paragraph at lines 130--132 []\T1/txtt/m/n/10 CrudeRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.d emographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports. spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 141--142 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.weather .WeatherNode prop- Overfull \hbox (1.23224pt too wide) in paragraph at lines 142--144 []\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weat her.weather.Metadata Overfull \hbox (13.67229pt too wide) in paragraph at lines 148--150 []\T1/txtt/m/n/10 DatavalueCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 155--156 []\T1/txtt/m/n/10 decorate_actual_iv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/txtt/m/n/10 decorate_actual_iv_impl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (14.49223pt too wide) in paragraph at lines 158--160 []\T1/txtt/m/n/10 default_population \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Node.Node Overfull \hbox (15.1475pt too wide) in paragraph at lines 160--162 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/txtt/m/n/10 DelayedIntervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 164--166 []\T1/txtt/m/n/10 Demographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 164--166 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 166--168 []\T1/txtt/m/n/10 DemographicsGenerator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Overfull \hbox (16.85251pt too wide) in paragraph at lines 166--168 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/txtt/m/n/10 DemographicsOverlay \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 168--170 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/txtt/m/n/10 DemographicsType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (16.85251pt too wide) in paragraph at lines 170--172 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/txtt/m/n/10 disable_warnings() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [82] Underfull \hbox (badness 10000) in paragraph at lines 174--176 []\T1/txtt/m/n/10 display() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 174--176 \T1/qtm/m/it/10 emod_api.channelreports.plot_icj_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 176--178 []\T1/txtt/m/n/10 do_mapping_from_events() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 176--178 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 179--181 []\T1/txtt/m/n/10 dtk_to_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.17227pt too wide) in paragraph at lines 181--183 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 183--185 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 186--188 []\T1/txtt/m/n/10 DtkFile.Contents \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 188--190 []\T1/txtt/m/n/10 DtkFile.Objects \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 190--192 []\T1/txtt/m/n/10 DtkFileV1 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 192--194 []\T1/txtt/m/n/10 DtkFileV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 194--196 []\T1/txtt/m/n/10 DtkFileV2.NodesV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 196--198 []\T1/txtt/m/n/10 DtkFileV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 198--200 []\T1/txtt/m/n/10 DtkFileV3.NodesV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 200--202 []\T1/txtt/m/n/10 DtkFileV4 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 202--204 []\T1/txtt/m/n/10 DtkFileV5 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 204--206 []\T1/txtt/m/n/10 DtkHeader \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (48.0174pt too wide) in paragraph at lines 206--208 []\T1/txtt/m/n/10 DtkRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.dem ographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 208--210 []\T1/txtt/m/n/10 duplicate_nodeID_check() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 208--210 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (19.2323pt too wide) in paragraph at lines 213--215 []\T1/txtt/m/n/10 EllZeeFour \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. serialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (27.37175pt too wide) in paragraph at lines 235--236 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (1.12183pt too wide) in paragraph at lines 237--238 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents 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(badness 10000) in paragraph at lines 356--358 []\T1/txtt/m/n/10 FAMILY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 358--360 []\T1/txtt/m/n/10 FEMALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 360--362 []\T1/txtt/m/n/10 fill_nodes_legacy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (46.2575pt too wide) in paragraph at lines 360--362 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (31.2124pt too wide) in paragraph at lines 364--366 []\T1/txtt/m/n/10 find() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.se rialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 flattenConfig() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (76.32239pt too wide) in paragraph at lines 368--370 []\T1/txtt/m/n/10 flush() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 372--374 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 372--374 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 377--379 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 377--379 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 379--381 []\T1/txtt/m/n/10 from_demog_and_param_gravity() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule [84] Overfull \hbox (113.91234pt too wide) in paragraph at lines 383--385 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (180.06232pt too wide) in paragraph at lines 385--387 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (197.29231pt too wide) in paragraph at lines 387--389 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution Overfull \hbox (203.09232pt too wide) in paragraph at lines 389--391 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (93.66234pt too wide) in paragraph at lines 391--393 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather. weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 395--397 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 395--397 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 397--399 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 397--399 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 399--400 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 400--402 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 400--402 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 402--403 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 []\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/txtt/m/n/10 from_pop_raster_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 405--407 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 407--409 []\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 407--409 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 409--411 []\T1/txtt/m/n/10 FullRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 409--411 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (13.67229pt too wide) in paragraph at lines 414--416 []\T1/txtt/m/n/10 GenderDataType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/txtt/m/n/10 generate_demographics() Overfull \hbox (115.38252pt too wide) in paragraph at lines 416--418 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (69.64224pt too wide) in paragraph at lines 418--420 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.BaseInputFile.BaseInputFile Overfull \hbox (73.8823pt too wide) in paragraph at lines 420--422 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Overfull \hbox (85.3922pt too wide) in paragraph at lines 422--424 []\T1/txtt/m/n/10 generate_headers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.BaseInputFile.BaseInputFile Underfull \hbox (badness 10000) in paragraph at lines 424--426 []\T1/txtt/m/n/10 generate_metadata() Overfull \hbox (115.38252pt too wide) in paragraph at lines 424--426 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (161.05228pt too wide) in paragraph at lines 426--428 []\T1/txtt/m/n/10 generate_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 430--432 []\T1/txtt/m/n/10 get_bbox() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 430--432 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 432--434 []\T1/txtt/m/n/10 get_class_with_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 434--436 []\T1/txtt/m/n/10 get_colour_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (44.89249pt too wide) in paragraph at lines 436--438 \T1/qtm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 438--440 []\T1/txtt/m/n/10 get_default_config_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 438--440 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 440--442 []\T1/txtt/m/n/10 get_default_for_complex_type() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (93.54231pt too wide) in paragraph at lines 442--444 []\T1/txtt/m/n/10 get_dtk_rate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.DemographicsTemplates.CrudeRate Underfull \hbox (badness 10000) in paragraph at lines 445--447 []\T1/txtt/m/n/10 get_fert_dist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 445--447 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/txtt/m/n/10 get_fert_dist_from_rates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 447--449 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 449--451 []\T1/txtt/m/n/10 get_grid_cell_id() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 449--451 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 452--454 []\T1/txtt/m/n/10 get_next_individual_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 452--454 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 454--456 []\T1/txtt/m/n/10 get_next_infection_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 454--456 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 456--458 []\T1/txtt/m/n/10 get_nickname_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.63237pt too wide) in paragraph at lines 458--460 []\T1/txtt/m/n/10 get_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 460--462 []\T1/txtt/m/n/10 get_node_ids_from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 460--462 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Overfull \hbox (34.67223pt too wide) in paragraph at lines 462--464 []\T1/txtt/m/n/10 get_node_offsets() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 464--466 []\T1/txtt/m/n/10 get_node_pops_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 464--466 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 get_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 466--468 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), [85] Underfull \hbox (badness 10000) in paragraph at lines 469--471 []\T1/txtt/m/n/10 get_report_channels() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 474--476 []\T1/txtt/m/n/10 get_shape_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 477--479 []\T1/txtt/m/n/10 get_waning_from_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 479--481 []\T1/txtt/m/n/10 get_waning_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 481--483 []\T1/txtt/m/n/10 get_waning_from_points() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 483--485 []\T1/txtt/m/n/10 get_xpix_ypix() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (9.92235pt too wide) in paragraph at lines 490--492 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreport s.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 492--494 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 5985) in paragraph at lines 501--503 []\T1/txtt/m/n/10 id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports.sp atial.SpatialNode prop- Underfull \hbox (badness 10000) in paragraph at lines 504--506 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 506--508 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Overfull \hbox (34.6714pt too wide) in paragraph at lines 508--510 []\T1/txtt/m/n/10 IDREF_GRUMP1DEGREE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 510--512 []\T1/txtt/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 510--512 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 512--514 []\T1/txtt/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 512--514 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (3.1715pt too wide) in paragraph at lines 514--516 []\T1/txtt/m/n/10 IDREF_LEGACY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 518--520 []\T1/txtt/m/n/10 IndividualAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 518--520 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Overfull \hbox (14.13748pt too wide) in paragraph at lines 520--522 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 522--524 []\T1/txtt/m/n/10 IndividualAttributes.FertilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 522--524 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 524--526 []\T1/txtt/m/n/10 IndividualAttributes.MortalityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 524--526 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Overfull \hbox (16.87178pt too wide) in paragraph at lines 526--528 []\T1/txtt/m/n/10 IndividualAttributes.SusceptibilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 526--528 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 528--530 []\T1/txtt/m/n/10 IndividualProperties \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 528--530 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 530--532 []\T1/txtt/m/n/10 IndividualProperty \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 530--532 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 532--534 []\T1/txtt/m/n/10 infer_natural_mortality() Overfull \hbox (33.46252pt too wide) in paragraph at lines 532--534 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 534--536 []\T1/txtt/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 534--536 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 536--538 []\T1/txtt/m/n/10 InitAgeUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 536--538 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 538--540 []\T1/txtt/m/n/10 InitPrevUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 538--540 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 540--542 []\T1/txtt/m/n/10 InitRiskExponential() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 540--542 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 542--544 []\T1/txtt/m/n/10 InitRiskLogNormal() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 542--544 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 544--546 []\T1/txtt/m/n/10 InitRiskUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 544--546 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 546--548 []\T1/txtt/m/n/10 InitSusceptConstant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 546--548 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 548--550 []\T1/txtt/m/n/10 inset_chart_json_to_csv_dataframe_pd() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (29.42224pt too wide) in paragraph at lines 550--552 []\T1/txtt/m/n/10 InterpolationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.mi gration.migration.Migration Overfull \hbox (2.72234pt too wide) in paragraph at lines 552--554 []\T1/txtt/m/n/10 interval \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Overfull \hbox (3.1715pt too wide) in paragraph at lines 554--556 []\T1/txtt/m/n/10 INTERVENTION \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration [86] Underfull \hbox (badness 10000) in paragraph at lines 561--563 []\T1/txtt/m/n/10 lat_lon_from_nodeid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 564--566 []\T1/txtt/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 564--566 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 566--568 []\T1/txtt/m/n/10 list_channels_and_ips() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 568--570 []\T1/txtt/m/n/10 load_default_config_as_rod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 568--570 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 570--572 []\T1/txtt/m/n/10 LOCAL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migr ation.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 573--575 []\T1/txtt/m/n/10 lon_lat_2_point() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 573--575 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Overfull \hbox (26.81233pt too wide) in paragraph at lines 578--580 []\T1/txtt/m/n/10 main() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.ch annelreports.plot_prop_report\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 581--583 []\T1/txtt/m/n/10 make_config_from_poi() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 581--583 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 583--585 []\T1/txtt/m/n/10 make_config_from_poi_and_config_dict() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 583--585 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 585--587 []\T1/txtt/m/n/10 make_config_from_poi_and_config_file() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 585--587 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 587--589 []\T1/txtt/m/n/10 make_config_from_poi_and_schema() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 589--590 []\T1/txtt/m/n/10 MALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 593--594 []\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Overfull \hbox (8.4223pt too wide) in paragraph at lines 595--597 []\T1/txtt/m/n/10 MigrationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrat ion.migration.Migration Overfull \hbox (2.62189pt too wide) in paragraph at lines 604--605 []| \T1/txtt/m/n/10 emod_api.channelreports.plot_prop_report\T1/qtm/m/n/10 , Overfull \hbox (49.87175pt too wide) in paragraph at lines 608--609 []| \T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 609--610 []| \T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 610--611 []| \T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (2.62189pt too wide) in paragraph at lines 619--620 []| \T1/txtt/m/n/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 620--621 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (55.12173pt too wide) in paragraph at lines 621--622 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m /n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 622--623 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Overfull \hbox (28.87181pt too wide) in paragraph at lines 624--625 []| \T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (28.87181pt too wide) in paragraph at lines 625--626 []| \T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Overfull \hbox (39.37178pt too wide) in paragraph at lines 627--628 []| \T1/txtt/m/n/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 634--635 []| \T1/txtt/m/n/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 636--637 []| \T1/txtt/m/n/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 , [87] Underfull \hbox (badness 10000) in paragraph at lines 649--650 []| \T1/txtt/m/n/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 653--654 []| \T1/txtt/m/n/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 657--658 []| \T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 659--660 []| \T1/txtt/m/n/10 emod_api.spatialreports.plot_spat_means\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 664--666 []\T1/txtt/m/n/10 MortalityRateByAge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Overfull \hbox (15.1475pt too wide) in paragraph at lines 664--666 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 666--668 []\T1/txtt/m/n/10 MortalityStructureNigeriaDHS() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 666--668 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 668--670 []\T1/txtt/m/n/10 MultiInterventionDistributor() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 673--675 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 673--675 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 675--677 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 675--677 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 677--679 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 679--681 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 679--681 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 681--683 []\T1/txtt/m/n/10 new_intervention2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 681--683 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 683--685 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 683--685 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 685--687 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 685--687 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 687--689 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 689--691 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 689--691 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 691--693 []\T1/txtt/m/n/10 new_scheduled_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 691--693 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Overfull \hbox (47.63237pt too wide) in paragraph at lines 695--697 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Overfull \hbox (13.2223pt too wide) in paragraph at lines 697--699 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/txtt/m/n/10 node_ID_from_lat_long() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 702--704 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (37.1324pt too wide) in paragraph at lines 704--706 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographic s.Demographics.Demographics Overfull \hbox (2.72234pt too wide) in paragraph at lines 706--708 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Underfull \hbox (badness 6808) in paragraph at lines 708--709 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 709--710 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Underfull \hbox (badness 10000) in paragraph at lines 710--712 []\T1/txtt/m/n/10 NodeAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 710--712 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 713--715 []\T1/txtt/m/n/10 NodeCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 715--717 []\T1/txtt/m/n/10 nodeid_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (21.38245pt too wide) in paragraph at lines 719--721 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.D emographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 722--724 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (65.82242pt too wide) in paragraph at lines 724--726 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 730--732 []\T1/txtt/m/n/10 nodes_for_DTK() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/txtt/m/n/10 NoInitialPrevalence() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 732--734 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), [88] Overfull \hbox (62.70738pt too wide) in paragraph at lines 734--736 []\T1/txtt/m/n/10 NoRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (3.48235pt too wide) in paragraph at lines 736--738 []\T1/txtt/m/n/10 NullPtr \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.ser ialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 738--740 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (10.35226pt too wide) in paragraph at lines 740--742 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 742--744 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 744--746 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 749--751 []\T1/txtt/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 749--751 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (34.6714pt too wide) in paragraph at lines 756--758 []\T1/txtt/m/n/10 PIECEWISE_CONSTANT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Overfull \hbox (21.05736pt too wide) in paragraph at lines 758--760 []\T1/txtt/m/n/10 plot() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.sp atialreports.plot_spat_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/txtt/m/n/10 plot_from_sql() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 762--764 []\T1/txtt/m/n/10 plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 764--765 []\T1/txtt/m/n/10 plotBunch() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 765--767 []\T1/txtt/m/n/10 plotCompareFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 767--769 []\T1/txtt/m/n/10 plotOneFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 769--771 []\T1/txtt/m/n/10 point_2_grid_cell_id_lookup() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 769--771 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 772--774 []\T1/txtt/m/n/10 process_cmd_line() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 772--774 \T1/qtm/m/it/10 emod_api.channelreports.plot_prop_report\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/txtt/m/n/10 prop_report_json_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 776--778 []\T1/txtt/m/n/10 property_report_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 778--780 []\T1/txtt/m/n/10 PropertyValueChanger() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 786--788 []\T1/txtt/m/n/10 read_json_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 789--791 []\T1/txtt/m/n/10 recurser() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 789--791 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (36.17227pt too wide) in paragraph at lines 793--795 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 795--797 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 797--799 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 799--801 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 801--803 []\T1/txtt/m/n/10 res_in_degrees \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 808--810 []\T1/txtt/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 808--810 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 811--813 []\T1/txtt/m/n/10 save_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 813--815 []\T1/txtt/m/n/10 ScheduledCampaignEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 815--817 []\T1/txtt/m/n/10 schema_to_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 815--817 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 817--819 []\T1/txtt/m/n/10 schema_to_config_subnode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 817--819 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 819--821 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 821--823 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 825--827 []\T1/txtt/m/n/10 seed_by_coverage() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (26.63243pt too wide) in paragraph at lines 827--829 []\T1/txtt/m/n/10 send() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. Demographics.Demographics [89] Underfull \hbox (badness 10000) in paragraph at lines 829--831 []\T1/txtt/m/n/10 SerializedPopulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 829--831 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 831--833 []\T1/txtt/m/n/10 SerialObject \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 833--835 []\T1/txtt/m/n/10 set_beautifiers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 835--837 []\T1/txtt/m/n/10 set_demog_distributions() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 835--837 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 837--839 []\T1/txtt/m/n/10 set_growing_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 837--839 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 839--841 []\T1/txtt/m/n/10 set_immune_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 839--841 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (161.05228pt too wide) in paragraph at lines 841--843 []\T1/txtt/m/n/10 set_resolution() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 843--845 []\T1/txtt/m/n/10 set_risk_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 843--845 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (6.99231pt too wide) in paragraph at lines 845--847 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_ to_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 848--850 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 848--850 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 850--852 []\T1/txtt/m/n/10 set_static_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 850--852 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 852--854 []\T1/txtt/m/n/10 SetAgeDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 852--854 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (68.63231pt too wide) in paragraph at lines 854--856 []\T1/txtt/m/n/10 SetBirthRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Demographics.Demographics Overfull \hbox (84.38226pt too wide) in paragraph at lines 856--858 []\T1/txtt/m/n/10 SetConstantRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.de mographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 858--860 []\T1/txtt/m/n/10 SetConstantSusceptibility() Overfull \hbox (33.46252pt too wide) in paragraph at lines 858--860 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 860--862 []\T1/txtt/m/n/10 SetDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 860--862 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 862--864 []\T1/txtt/m/n/10 SetDefaultIndividualAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 862--864 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 864--866 []\T1/txtt/m/n/10 SetDefaultIndividualProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 864--866 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 866--868 []\T1/txtt/m/n/10 SetDefaultNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 866--868 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 868--870 []\T1/txtt/m/n/10 SetDefaultProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 868--870 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 870--872 []\T1/txtt/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 870--872 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (1.12183pt too wide) in paragraph at lines 872--874 []\T1/txtt/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (33.46252pt too wide) in paragraph at lines 872--874 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 874--876 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamics() Overfull \hbox (33.46252pt too wide) in paragraph at lines 874--876 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 876--878 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamicsFromWorldBank() Overfull \hbox (33.46252pt too wide) in paragraph at lines 876--878 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 878--880 []\T1/txtt/m/n/10 SetFertilityOverTimeFromParams() Overfull \hbox (33.46252pt too wide) in paragraph at lines 878--880 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 880--882 []\T1/txtt/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 880--882 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/txtt/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 882--884 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 884--886 []\T1/txtt/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 884--886 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 886--888 []\T1/txtt/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 886--888 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 888--890 []\T1/txtt/m/n/10 SetInitialAgeExponential() Overfull \hbox (33.46252pt too wide) in paragraph at lines 888--890 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 890--892 []\T1/txtt/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (33.46252pt too wide) in paragraph at lines 890--892 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 892--894 []\T1/txtt/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (33.46252pt too wide) in paragraph at lines 892--894 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 894--896 []\T1/txtt/m/n/10 SetMigrationPattern() Overfull \hbox (33.46252pt too wide) in paragraph at lines 894--896 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 896--898 []\T1/txtt/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 896--898 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 898--900 []\T1/txtt/m/n/10 SetMortalityDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 898--900 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 900--902 []\T1/txtt/m/n/10 SetMortalityOverTimeFromData() Overfull \hbox (33.46252pt too wide) in paragraph at lines 900--902 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (89.63225pt too wide) in paragraph at lines 902--904 []\T1/txtt/m/n/10 SetMortalityRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/txtt/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 904--906 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics [90] Underfull \hbox (badness 10000) in paragraph at lines 906--908 []\T1/txtt/m/n/10 SetOneWayMigration() Overfull \hbox (33.46252pt too wide) in paragraph at lines 906--908 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 908--910 []\T1/txtt/m/n/10 SetOverdispersion() Overfull \hbox (33.46252pt too wide) in paragraph at lines 908--910 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 910--912 []\T1/txtt/m/n/10 SetRoundTripMigration() Overfull \hbox (33.46252pt too wide) in paragraph at lines 910--912 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 912--914 []\T1/txtt/m/n/10 SetSimpleVitalDynamics() Overfull \hbox (33.46252pt too wide) in paragraph at lines 912--914 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (15.1475pt too wide) in paragraph at lines 914--916 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (14.49228pt too wide) in paragraph at lines 916--918 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV1 Overfull \hbox (14.49228pt too wide) in paragraph at lines 918--920 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV2 Overfull \hbox (14.49228pt too wide) in paragraph at lines 920--922 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV3 Underfull \hbox (badness 10000) in paragraph at lines 924--926 []\T1/txtt/m/n/10 SpatialReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 926--928 []\T1/txtt/m/n/10 StandardDiagnostic() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 928--930 []\T1/txtt/m/n/10 start \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Overfull \hbox (30.92229pt too wide) in paragraph at lines 930--932 []\T1/txtt/m/n/10 start_time \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (85.98161pt too wide) in paragraph at lines 934--936 []\T1/txtt/m/n/10 STATIC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. DemographicsGenerator.DemographicsType Overfull \hbox (25.6723pt too wide) in paragraph at lines 936--938 []\T1/txtt/m/n/10 step_size \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrep orts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 940--942 []\T1/txtt/m/n/10 StepFunctionSusceptibility() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 940--942 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (30.92229pt too wide) in paragraph at lines 947--949 []\T1/txtt/m/n/10 time_stamp \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (13.2223pt too wide) in paragraph at lines 951--953 []\T1/txtt/m/n/10 time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 953--955 []\T1/txtt/m/n/10 title \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreports .channels.Channel Overfull \hbox (20.42232pt too wide) in paragraph at lines 955--957 []\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrepo rts.channels.ChannelReport Overfull \hbox (42.38239pt too wide) in paragraph at lines 958--960 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.Demographics Overfull \hbox (74.09238pt too wide) in paragraph at lines 960--962 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 962--963 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Node.Node Overfull \hbox (108.27232pt too wide) in paragraph at lines 963--965 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PreDefinedDistributions.ConstantDistribution Overfull \hbox (103.41237pt too wide) in paragraph at lines 965--967 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (169.56235pt too wide) in paragraph at lines 967--969 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (186.79234pt too wide) in paragraph at lines 969--971 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution Overfull \hbox (192.59235pt too wide) in paragraph at lines 971--973 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (208.45236pt too wide) in paragraph at lines 973--975 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi 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cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 985--987 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 987--989 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 989--990 []\T1/txtt/m/n/10 to_tuple() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 990--991 []\T1/txtt/m/n/10 Tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration prop- Underfull \hbox (badness 10000) in paragraph at lines 993--995 []\T1/txtt/m/n/10 triggered_campaign_delay_event() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (11.6218pt too wide) in paragraph at lines 995--997 []\T1/txtt/m/n/10 triggered_campaign_event_with_optional_delay() Underfull \hbox (badness 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[]\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 2718--2721 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [27] Overfull \hbox (43.13435pt too wide) in paragraph at lines 2889--2889 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualAttributes[][]\T1/qtm/m/it/10 ] Overfull \hbox (43.93436pt too wide) in paragraph at lines 2889--2889 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperties[][]\T1/qtm/m/it/10 ] Overfull \hbox (23.48436pt too wide) in paragraph at lines 2889--2889 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.NodeAttributes[][]\T1/qtm/m/it/10 ] [28] [29] Overfull \hbox (221.57382pt too wide) in paragraph at lines 3068--3068 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 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(30.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 nity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 nity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 nity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 risk_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 risk_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 risk_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (89.17386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 tion_heterogeneity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 tion_heterogeneity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (29.62386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution_male=None\T1/qtm/m/n/10 , Overfull \hbox (36.54384pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution_female=None\T1/qtm/m/n/10 , Overfull \hbox (7.93384pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution=None\T1/txtt/m/n/10 )| [30] [31] Overfull \hbox (10.98395pt too wide) in paragraph at lines 3200--3200 \T1/qtm/m/it/10 tial_vectors_per_species=None\T1/qtm/m/n/10 , [32] [33] Underfull \hbox (badness 5578) in paragraph at lines 3419--3422 []\T1/qtm/m/n/10 Cre-ate a static de-mo-graph-ics based on the de-mo-graph-ics file spec-i-fied in the con-fig file of the [34] Overfull \hbox (5.21407pt too wide) in paragraph at lines 3589--3589 \T1/qtm/m/it/10 Node_Selection_Type=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 DISTANCE_ ONLY\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 3854--3856 []\T1/txtt/bx/n/10 IP. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Target_Property_Value. The value part of the new key[]value pair Underfull \hbox (badness 10000) in paragraph at lines 3866--3868 []\T1/txtt/bx/n/10 Target_Property_Value. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Dail y_Probability. The daily probability that Underfull \hbox (badness 10000) in paragraph at lines 3870--3872 []\T1/txtt/bx/n/10 Daily_Probability. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Maximum_ Duration. The maximum amount of time Underfull \hbox (badness 10000) in paragraph at lines 3870--3872 \T1/txtt/m/sl/10 individuals have to move to a new group. This timing works in Underfull \hbox (badness 10000) in paragraph at lines 3874--3876 []\T1/txtt/bx/n/10 group. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Revert. The number o f days before an individual moves back to Underfull \hbox (badness 10000) in paragraph at lines 3878--3880 []\T1/txtt/bx/n/10 policy. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Intervention_Name. Optional Intervention_Name. Useful if Underfull \hbox (badness 10000) in paragraph at lines 3886--3888 []\T1/txtt/bx/n/10 expired. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Event_Trigger_Expi red. Optional broadcast trigger to be [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 4193--4195 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is Overfull \hbox (2.75383pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 ip_targeting=None\T1/qtm/m/n/10 , Overfull \hbox (10.51382pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 get_age_max=45625\T1/qtm/m/n/10 , Overfull \hbox (29.36382pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 get_residents_only=False\T1/qtm/m/n/10 , Overfull \hbox (24.73378pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 check_at_trigger=False\T1/txtt/m/n/10 )| [41] Underfull \hbox (badness 10000) in paragraph at lines 4247--4249 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [42] [43] [44] [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 []\T1/qtm/m/n/10 {^^PDu-ra-tion_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DIST RIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 []\T1/qtm/m/n/10 {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTIO N^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 \T1/qtm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 \T1/qtm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- [47] Overfull \hbox (17.85501pt too wide) in paragraph at lines 4805--4810 \T1/qtm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (55.02502pt too wide) in paragraph at lines 4805--4810 \T1/qtm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4811--4817 []\T1/qtm/m/n/10 du-ra- ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4840 ...{CONST(ANT)}] \leavevmode\begin{itemize} [48] [49] [50] [51] Underfull \hbox (badness 10000) in paragraph at lines 5374--5378 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [52] [53] Overfull \hbox (57.54393pt too wide) in paragraph at lines 5674--5674 [][]\T1/qtm/m/it/10 emod_api.migration.migration.Migration[][]| [54] [55] [56] [57] [58] [59] [60] [61] [62] Underfull \hbox (badness 6842) in paragraph at lines 6850--6853 []\T1/qtm/m/n/10 Set the (path to) the schema file. And re-set all cam-paign va ri-ables. This is es-sen-tially a [63] [64] [65] [66] Chapter 4. [67] [68] Chapter 5. [69] [70] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 7206--7208 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_icj_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [[]t [71] [72 <./sweep_plot.png>] Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 7257--7259 []\T1/txtt/m/n/10 python []m emod_api.spatialreports.plot_spat_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [73] [74 <./spat_plot.png>] Chapter 8. Underfull \hbox (badness 10000) in paragraph at lines 7294--7296 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_prop_report.py [[]h] [[]c channelName] [[]p PRIMARY] [75] [76 <./prop_plot.png>] Chapter 9. [77] [78 <./colormap_plot.png>] Overfull \hbox (29.87175pt too wide) in paragraph at lines 7446--7447 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/ 10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 7447--7448 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7448--7449 []\T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7458--7459 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 7459--7460 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 7460--7461 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7462--7463 []\T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7463--7464 []\T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Overfull \hbox (19.37178pt too wide) in paragraph at lines 7465--7466 []\T1/txtt/m/n/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7495--7496 []\T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , [79] (./institute-for-disease-modeling-emod-api.ind [80] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/txtt/m/n/10 accumulate_channel_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (85.18242pt too wide) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.P ropertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/txtt/m/n/10 add_migration_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (137.68227pt too wide) in paragraph at lines 15--17 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (49.44226pt too wide) in paragraph at lines 17--19 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/txtt/m/n/10 AddAgeDependentTransmission() Overfull \hbox (33.46252pt too wide) in paragraph at lines 19--21 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/txtt/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (33.46252pt too wide) in paragraph at lines 21--23 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/txtt/m/n/10 AgeStructureUNWPP() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 23--25 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/txtt/m/n/10 AgesYears \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Overfull \hbox (31.54231pt too wide) in paragraph at lines 28--30 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Contents Overfull \hbox (26.68231pt too wide) in paragraph at lines 30--32 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.10747pt too wide) in paragraph at lines 32--34 \T1/qtm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 34--36 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (73.8823pt too wide) in paragraph at lines 40--42 []\T1/txtt/m/n/10 apply_overlay() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 apply_to_defaults_or_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 42--44 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 arcsec_to_deg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 44--46 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Overfull \hbox (51.92223pt too wide) in paragraph at lines 46--48 []\T1/txtt/m/n/10 as_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (30.00221pt too wide) in paragraph at lines 48--50 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Channel Overfull \hbox (26.10222pt too wide) in paragraph at lines 50--52 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/txtt/m/n/10 author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 63--65 []\T1/txtt/m/n/10 BaseInputFile \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 63--65 \T1/qtm/m/it/10 emod_api.demographics.BaseInputFile\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 65--66 []\T1/txtt/m/n/10 basicNode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 67--69 []\T1/txtt/m/n/10 BroadcastEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 69--71 []\T1/txtt/m/n/10 BroadcastEventToOtherNodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 72--74 []\T1/txtt/m/n/10 byte_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 call_plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [81] Underfull \hbox (badness 10000) in paragraph at lines 79--81 []\T1/txtt/m/n/10 change_individual_property() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 83--85 []\T1/txtt/m/n/10 change_individual_property_scheduled() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 85--87 []\T1/txtt/m/n/10 change_individual_property_triggered() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/txtt/m/n/10 change_ser_pop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 87--89 \T1/qtm/m/it/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 ), Overfull \hbox (46.67224pt too wide) in paragraph at lines 90--92 []\T1/txtt/m/n/10 channel_names \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channe lreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 ChannelReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (20.42232pt too wide) in paragraph at lines 94--96 []\T1/txtt/m/n/10 channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrepo rts.channels.ChannelReport Overfull \hbox (9.38226pt too wide) in paragraph at lines 96--98 []\T1/txtt/m/n/10 chunk_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 98--100 []\T1/txtt/m/n/10 chunk_sizes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 chunks \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/txtt/m/n/10 collect() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 102--104 \T1/qtm/m/it/10 emod_api.channelreports.plot_icj_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 collect() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 104--106 \T1/qtm/m/it/10 emod_api.spatialreports.plot_spat_means\T1/qtm/m/n/10 ), Overfull \hbox (29.63231pt too wide) in paragraph at lines 106--108 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.EllZeeFour Overfull \hbox (13.76231pt too wide) in paragraph at lines 108--110 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Snappy Overfull \hbox (43.15228pt too wide) in paragraph at lines 110--112 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 114--116 []\T1/txtt/m/n/10 compressed \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 116--118 []\T1/txtt/m/n/10 compression \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 ConstantDistribution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.58746pt too wide) in paragraph at lines 118--120 \T1/qtm/m/it/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 construct() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 120--122 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 ConstructNodesFromDataFrame() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 122--124 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (92.52237pt too wide) in paragraph at lines 124--126 []\T1/txtt/m/n/10 copy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. PreDefinedDistributions.ConstantDistribution Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Weather Overfull \hbox (58.51736pt too wide) in paragraph at lines 130--132 []\T1/txtt/m/n/10 CrudeRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.d emographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports. spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 141--142 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.weather .WeatherNode prop- Overfull \hbox (1.23224pt too wide) in paragraph at lines 142--144 []\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weat her.weather.Metadata Overfull \hbox (13.67229pt too wide) in paragraph at lines 148--150 []\T1/txtt/m/n/10 DatavalueCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 155--156 []\T1/txtt/m/n/10 decorate_actual_iv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/txtt/m/n/10 decorate_actual_iv_impl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (14.49223pt too wide) in paragraph at lines 158--160 []\T1/txtt/m/n/10 default_population \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Node.Node Overfull \hbox (15.1475pt too wide) in paragraph at lines 160--162 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/txtt/m/n/10 DelayedIntervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 164--166 []\T1/txtt/m/n/10 Demographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 164--166 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 166--168 []\T1/txtt/m/n/10 DemographicsGenerator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Overfull \hbox (16.85251pt too wide) in paragraph at lines 166--168 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/txtt/m/n/10 DemographicsOverlay \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 168--170 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/txtt/m/n/10 DemographicsType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (16.85251pt too wide) in paragraph at lines 170--172 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/txtt/m/n/10 disable_warnings() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [82] Underfull \hbox (badness 10000) in paragraph at lines 174--176 []\T1/txtt/m/n/10 display() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 174--176 \T1/qtm/m/it/10 emod_api.channelreports.plot_icj_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 176--178 []\T1/txtt/m/n/10 do_mapping_from_events() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 176--178 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 179--181 []\T1/txtt/m/n/10 dtk_to_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.17227pt too wide) in paragraph at lines 181--183 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 183--185 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 186--188 []\T1/txtt/m/n/10 DtkFile.Contents \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 188--190 []\T1/txtt/m/n/10 DtkFile.Objects \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 190--192 []\T1/txtt/m/n/10 DtkFileV1 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 192--194 []\T1/txtt/m/n/10 DtkFileV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 194--196 []\T1/txtt/m/n/10 DtkFileV2.NodesV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 196--198 []\T1/txtt/m/n/10 DtkFileV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 198--200 []\T1/txtt/m/n/10 DtkFileV3.NodesV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 200--202 []\T1/txtt/m/n/10 DtkFileV4 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 202--204 []\T1/txtt/m/n/10 DtkFileV5 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 204--206 []\T1/txtt/m/n/10 DtkHeader \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (48.0174pt too wide) in paragraph at lines 206--208 []\T1/txtt/m/n/10 DtkRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.dem ographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 208--210 []\T1/txtt/m/n/10 duplicate_nodeID_check() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 208--210 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (19.2323pt too wide) in paragraph at lines 213--215 []\T1/txtt/m/n/10 EllZeeFour \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. serialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (27.37175pt too wide) in paragraph at lines 235--236 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (1.12183pt too wide) in paragraph at lines 237--238 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents 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(badness 10000) in paragraph at lines 356--358 []\T1/txtt/m/n/10 FAMILY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 358--360 []\T1/txtt/m/n/10 FEMALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 360--362 []\T1/txtt/m/n/10 fill_nodes_legacy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (46.2575pt too wide) in paragraph at lines 360--362 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (31.2124pt too wide) in paragraph at lines 364--366 []\T1/txtt/m/n/10 find() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.se rialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 flattenConfig() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (76.32239pt too wide) in paragraph at lines 368--370 []\T1/txtt/m/n/10 flush() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 372--374 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 372--374 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 377--379 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 377--379 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 379--381 []\T1/txtt/m/n/10 from_demog_and_param_gravity() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule [84] Overfull \hbox (113.91234pt too wide) in paragraph at lines 383--385 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (180.06232pt too wide) in paragraph at lines 385--387 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (197.29231pt too wide) in paragraph at lines 387--389 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution Overfull \hbox (203.09232pt too wide) in paragraph at lines 389--391 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (93.66234pt too wide) in paragraph at lines 391--393 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather. weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 395--397 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 395--397 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 397--399 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 397--399 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 399--400 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 400--402 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 400--402 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 402--403 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 []\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/txtt/m/n/10 from_pop_raster_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 405--407 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 407--409 []\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 407--409 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 409--411 []\T1/txtt/m/n/10 FullRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 409--411 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (13.67229pt too wide) in paragraph at lines 414--416 []\T1/txtt/m/n/10 GenderDataType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/txtt/m/n/10 generate_demographics() Overfull \hbox (115.38252pt too wide) in paragraph at lines 416--418 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (69.64224pt too wide) in paragraph at lines 418--420 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.BaseInputFile.BaseInputFile Overfull \hbox (73.8823pt too wide) in paragraph at lines 420--422 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Overfull \hbox (85.3922pt too wide) in paragraph at lines 422--424 []\T1/txtt/m/n/10 generate_headers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.BaseInputFile.BaseInputFile Underfull \hbox (badness 10000) in paragraph at lines 424--426 []\T1/txtt/m/n/10 generate_metadata() Overfull \hbox (115.38252pt too wide) in paragraph at lines 424--426 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (161.05228pt too wide) in paragraph at lines 426--428 []\T1/txtt/m/n/10 generate_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 430--432 []\T1/txtt/m/n/10 get_bbox() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 430--432 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 432--434 []\T1/txtt/m/n/10 get_class_with_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 434--436 []\T1/txtt/m/n/10 get_colour_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (44.89249pt too wide) in paragraph at lines 436--438 \T1/qtm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 438--440 []\T1/txtt/m/n/10 get_default_config_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 438--440 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 440--442 []\T1/txtt/m/n/10 get_default_for_complex_type() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (93.54231pt too wide) in paragraph at lines 442--444 []\T1/txtt/m/n/10 get_dtk_rate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.DemographicsTemplates.CrudeRate Underfull \hbox (badness 10000) in paragraph at lines 445--447 []\T1/txtt/m/n/10 get_fert_dist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 445--447 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/txtt/m/n/10 get_fert_dist_from_rates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 447--449 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 449--451 []\T1/txtt/m/n/10 get_grid_cell_id() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 449--451 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 452--454 []\T1/txtt/m/n/10 get_next_individual_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 452--454 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 454--456 []\T1/txtt/m/n/10 get_next_infection_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 454--456 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 456--458 []\T1/txtt/m/n/10 get_nickname_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.63237pt too wide) in paragraph at lines 458--460 []\T1/txtt/m/n/10 get_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 460--462 []\T1/txtt/m/n/10 get_node_ids_from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 460--462 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Overfull \hbox (34.67223pt too wide) in paragraph at lines 462--464 []\T1/txtt/m/n/10 get_node_offsets() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 464--466 []\T1/txtt/m/n/10 get_node_pops_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 464--466 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 get_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 466--468 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), [85] Underfull \hbox 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emod_api.channelreport s.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 492--494 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 5985) in paragraph at lines 501--503 []\T1/txtt/m/n/10 id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports.sp atial.SpatialNode prop- Underfull \hbox (badness 10000) in paragraph at lines 504--506 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 506--508 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Overfull \hbox (34.6714pt too wide) in paragraph at lines 508--510 []\T1/txtt/m/n/10 IDREF_GRUMP1DEGREE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 510--512 []\T1/txtt/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 510--512 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 512--514 []\T1/txtt/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 512--514 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (3.1715pt too wide) in paragraph at lines 514--516 []\T1/txtt/m/n/10 IDREF_LEGACY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 518--520 []\T1/txtt/m/n/10 IndividualAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 518--520 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Overfull \hbox (14.13748pt too wide) in paragraph at lines 520--522 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 522--524 []\T1/txtt/m/n/10 IndividualAttributes.FertilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 522--524 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 524--526 []\T1/txtt/m/n/10 IndividualAttributes.MortalityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 524--526 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Overfull \hbox (16.87178pt too wide) in paragraph at lines 526--528 []\T1/txtt/m/n/10 IndividualAttributes.SusceptibilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 526--528 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 528--530 []\T1/txtt/m/n/10 IndividualProperties \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 528--530 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 530--532 []\T1/txtt/m/n/10 IndividualProperty \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 530--532 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 532--534 []\T1/txtt/m/n/10 infer_natural_mortality() Overfull \hbox (33.46252pt too wide) in paragraph at lines 532--534 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 534--536 []\T1/txtt/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 534--536 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 536--538 []\T1/txtt/m/n/10 InitAgeUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 536--538 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 538--540 []\T1/txtt/m/n/10 InitPrevUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 538--540 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 540--542 []\T1/txtt/m/n/10 InitRiskExponential() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 540--542 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 542--544 []\T1/txtt/m/n/10 InitRiskLogNormal() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 542--544 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 544--546 []\T1/txtt/m/n/10 InitRiskUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 544--546 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 546--548 []\T1/txtt/m/n/10 InitSusceptConstant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 546--548 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 548--550 []\T1/txtt/m/n/10 inset_chart_json_to_csv_dataframe_pd() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (29.42224pt too wide) in paragraph at lines 550--552 []\T1/txtt/m/n/10 InterpolationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.mi gration.migration.Migration Overfull \hbox (2.72234pt too wide) in paragraph at lines 552--554 []\T1/txtt/m/n/10 interval \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Overfull \hbox (3.1715pt too wide) in paragraph at lines 554--556 []\T1/txtt/m/n/10 INTERVENTION \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration [86] Underfull \hbox (badness 10000) in paragraph at lines 561--563 []\T1/txtt/m/n/10 lat_lon_from_nodeid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 564--566 []\T1/txtt/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 564--566 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 566--568 []\T1/txtt/m/n/10 list_channels_and_ips() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 568--570 []\T1/txtt/m/n/10 load_default_config_as_rod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 568--570 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 570--572 []\T1/txtt/m/n/10 LOCAL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migr ation.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 573--575 []\T1/txtt/m/n/10 lon_lat_2_point() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 573--575 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Overfull \hbox (26.81233pt too wide) in paragraph at lines 578--580 []\T1/txtt/m/n/10 main() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.ch annelreports.plot_prop_report\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 581--583 []\T1/txtt/m/n/10 make_config_from_poi() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 581--583 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 583--585 []\T1/txtt/m/n/10 make_config_from_poi_and_config_dict() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 583--585 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 585--587 []\T1/txtt/m/n/10 make_config_from_poi_and_config_file() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 585--587 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 587--589 []\T1/txtt/m/n/10 make_config_from_poi_and_schema() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 589--590 []\T1/txtt/m/n/10 MALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 593--594 []\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Overfull \hbox (8.4223pt too wide) in paragraph at lines 595--597 []\T1/txtt/m/n/10 MigrationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrat ion.migration.Migration Overfull \hbox (2.62189pt too wide) in paragraph at lines 604--605 []| \T1/txtt/m/n/10 emod_api.channelreports.plot_prop_report\T1/qtm/m/n/10 , Overfull \hbox (49.87175pt too wide) in paragraph at lines 608--609 []| \T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 609--610 []| \T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 610--611 []| \T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (2.62189pt too wide) in paragraph at lines 619--620 []| \T1/txtt/m/n/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 620--621 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (55.12173pt too wide) in paragraph at lines 621--622 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m /n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 622--623 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Overfull \hbox (28.87181pt too wide) in paragraph at lines 624--625 []| \T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (28.87181pt too wide) in paragraph at lines 625--626 []| \T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Overfull \hbox (39.37178pt too wide) in paragraph at lines 627--628 []| \T1/txtt/m/n/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 634--635 []| \T1/txtt/m/n/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 636--637 []| \T1/txtt/m/n/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 , [87] Underfull \hbox (badness 10000) in paragraph at lines 649--650 []| \T1/txtt/m/n/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 653--654 []| \T1/txtt/m/n/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 657--658 []| \T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 659--660 []| \T1/txtt/m/n/10 emod_api.spatialreports.plot_spat_means\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 664--666 []\T1/txtt/m/n/10 MortalityRateByAge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Overfull \hbox (15.1475pt too wide) in paragraph at lines 664--666 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 666--668 []\T1/txtt/m/n/10 MortalityStructureNigeriaDHS() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 666--668 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 668--670 []\T1/txtt/m/n/10 MultiInterventionDistributor() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 673--675 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 673--675 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 675--677 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 675--677 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 677--679 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 679--681 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 679--681 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 681--683 []\T1/txtt/m/n/10 new_intervention2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 681--683 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 683--685 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 683--685 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 685--687 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 685--687 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 687--689 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 689--691 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 689--691 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 691--693 []\T1/txtt/m/n/10 new_scheduled_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 691--693 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Overfull \hbox (47.63237pt too wide) in paragraph at lines 695--697 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Overfull \hbox (13.2223pt too wide) in paragraph at lines 697--699 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/txtt/m/n/10 node_ID_from_lat_long() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 702--704 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (37.1324pt too wide) in paragraph at lines 704--706 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographic s.Demographics.Demographics Overfull \hbox (2.72234pt too wide) in paragraph at lines 706--708 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Underfull \hbox (badness 6808) in paragraph at lines 708--709 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 709--710 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Underfull \hbox (badness 10000) in paragraph at lines 710--712 []\T1/txtt/m/n/10 NodeAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 710--712 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 713--715 []\T1/txtt/m/n/10 NodeCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 715--717 []\T1/txtt/m/n/10 nodeid_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (21.38245pt too wide) in paragraph at lines 719--721 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.D emographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 722--724 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (65.82242pt too wide) in paragraph at lines 724--726 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 730--732 []\T1/txtt/m/n/10 nodes_for_DTK() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/txtt/m/n/10 NoInitialPrevalence() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 732--734 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), [88] Overfull \hbox (62.70738pt too wide) in paragraph at lines 734--736 []\T1/txtt/m/n/10 NoRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (3.48235pt too wide) in paragraph at lines 736--738 []\T1/txtt/m/n/10 NullPtr \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.ser ialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 738--740 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (10.35226pt too wide) in paragraph at lines 740--742 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 742--744 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 744--746 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 749--751 []\T1/txtt/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 749--751 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (34.6714pt too wide) in paragraph at lines 756--758 []\T1/txtt/m/n/10 PIECEWISE_CONSTANT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Overfull \hbox (21.05736pt too wide) in paragraph at lines 758--760 []\T1/txtt/m/n/10 plot() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.sp atialreports.plot_spat_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/txtt/m/n/10 plot_from_sql() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 762--764 []\T1/txtt/m/n/10 plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 764--765 []\T1/txtt/m/n/10 plotBunch() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 765--767 []\T1/txtt/m/n/10 plotCompareFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 767--769 []\T1/txtt/m/n/10 plotOneFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 769--771 []\T1/txtt/m/n/10 point_2_grid_cell_id_lookup() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 769--771 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 772--774 []\T1/txtt/m/n/10 process_cmd_line() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 772--774 \T1/qtm/m/it/10 emod_api.channelreports.plot_prop_report\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/txtt/m/n/10 prop_report_json_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 776--778 []\T1/txtt/m/n/10 property_report_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 778--780 []\T1/txtt/m/n/10 PropertyValueChanger() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 786--788 []\T1/txtt/m/n/10 read_json_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 789--791 []\T1/txtt/m/n/10 recurser() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 789--791 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (36.17227pt too wide) in paragraph at lines 793--795 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 795--797 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 797--799 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 799--801 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 801--803 []\T1/txtt/m/n/10 res_in_degrees \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 808--810 []\T1/txtt/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 808--810 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 811--813 []\T1/txtt/m/n/10 save_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 813--815 []\T1/txtt/m/n/10 ScheduledCampaignEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 815--817 []\T1/txtt/m/n/10 schema_to_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 815--817 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 817--819 []\T1/txtt/m/n/10 schema_to_config_subnode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 817--819 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 819--821 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 821--823 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 825--827 []\T1/txtt/m/n/10 seed_by_coverage() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (26.63243pt too wide) in paragraph at lines 827--829 []\T1/txtt/m/n/10 send() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. Demographics.Demographics [89] Underfull \hbox (badness 10000) in paragraph at lines 829--831 []\T1/txtt/m/n/10 SerializedPopulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 829--831 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 831--833 []\T1/txtt/m/n/10 SerialObject \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 833--835 []\T1/txtt/m/n/10 set_beautifiers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 835--837 []\T1/txtt/m/n/10 set_demog_distributions() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 835--837 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 837--839 []\T1/txtt/m/n/10 set_growing_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 837--839 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 839--841 []\T1/txtt/m/n/10 set_immune_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 839--841 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (161.05228pt too wide) in paragraph at lines 841--843 []\T1/txtt/m/n/10 set_resolution() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 843--845 []\T1/txtt/m/n/10 set_risk_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 843--845 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (6.99231pt too wide) in paragraph at lines 845--847 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_ to_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 848--850 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 848--850 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 850--852 []\T1/txtt/m/n/10 set_static_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 850--852 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 852--854 []\T1/txtt/m/n/10 SetAgeDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 852--854 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (68.63231pt too wide) in paragraph at lines 854--856 []\T1/txtt/m/n/10 SetBirthRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Demographics.Demographics Overfull \hbox (84.38226pt too wide) in paragraph at lines 856--858 []\T1/txtt/m/n/10 SetConstantRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.de mographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 858--860 []\T1/txtt/m/n/10 SetConstantSusceptibility() Overfull \hbox (33.46252pt too wide) in paragraph at lines 858--860 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 860--862 []\T1/txtt/m/n/10 SetDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 860--862 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 862--864 []\T1/txtt/m/n/10 SetDefaultIndividualAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 862--864 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 864--866 []\T1/txtt/m/n/10 SetDefaultIndividualProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 864--866 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 866--868 []\T1/txtt/m/n/10 SetDefaultNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 866--868 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 868--870 []\T1/txtt/m/n/10 SetDefaultProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 868--870 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 870--872 []\T1/txtt/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 870--872 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (1.12183pt too wide) in paragraph at lines 872--874 []\T1/txtt/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (33.46252pt too wide) in paragraph at lines 872--874 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 874--876 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamics() Overfull \hbox (33.46252pt too wide) in paragraph at lines 874--876 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 876--878 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamicsFromWorldBank() Overfull \hbox (33.46252pt too wide) in paragraph at lines 876--878 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 878--880 []\T1/txtt/m/n/10 SetFertilityOverTimeFromParams() Overfull \hbox (33.46252pt too wide) in paragraph at lines 878--880 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 880--882 []\T1/txtt/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 880--882 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/txtt/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 882--884 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 884--886 []\T1/txtt/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 884--886 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 886--888 []\T1/txtt/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 886--888 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 888--890 []\T1/txtt/m/n/10 SetInitialAgeExponential() Overfull \hbox (33.46252pt too wide) in paragraph at lines 888--890 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 890--892 []\T1/txtt/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (33.46252pt too wide) in paragraph at lines 890--892 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 892--894 []\T1/txtt/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (33.46252pt too wide) in paragraph at lines 892--894 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics 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emod_api.demographics.Demographics.Demographics Overfull \hbox (89.63225pt too wide) in paragraph at lines 902--904 []\T1/txtt/m/n/10 SetMortalityRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/txtt/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 904--906 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics [90] Underfull \hbox (badness 10000) in paragraph at lines 906--908 []\T1/txtt/m/n/10 SetOneWayMigration() Overfull \hbox (33.46252pt too wide) in paragraph at lines 906--908 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 908--910 []\T1/txtt/m/n/10 SetOverdispersion() Overfull \hbox (33.46252pt too wide) in paragraph at lines 908--910 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics 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tion.dtkFileTools.DtkFileV2 Overfull \hbox (14.49228pt too wide) in paragraph at lines 920--922 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV3 Underfull \hbox (badness 10000) in paragraph at lines 924--926 []\T1/txtt/m/n/10 SpatialReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 926--928 []\T1/txtt/m/n/10 StandardDiagnostic() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 928--930 []\T1/txtt/m/n/10 start \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Overfull \hbox (30.92229pt too wide) in paragraph at lines 930--932 []\T1/txtt/m/n/10 start_time \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (85.98161pt too wide) in paragraph at lines 934--936 []\T1/txtt/m/n/10 STATIC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. DemographicsGenerator.DemographicsType Overfull \hbox (25.6723pt too wide) in paragraph at lines 936--938 []\T1/txtt/m/n/10 step_size \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrep orts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 940--942 []\T1/txtt/m/n/10 StepFunctionSusceptibility() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 940--942 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (30.92229pt too wide) in paragraph at lines 947--949 []\T1/txtt/m/n/10 time_stamp \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (13.2223pt too wide) in paragraph at lines 951--953 []\T1/txtt/m/n/10 time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 953--955 []\T1/txtt/m/n/10 title \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreports .channels.Channel Overfull \hbox (20.42232pt too wide) in paragraph at lines 955--957 []\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrepo rts.channels.ChannelReport Overfull \hbox (42.38239pt too wide) in paragraph at lines 958--960 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.Demographics Overfull \hbox (74.09238pt too wide) in paragraph at lines 960--962 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 962--963 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Node.Node Overfull \hbox (108.27232pt too wide) in paragraph at lines 963--965 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PreDefinedDistributions.ConstantDistribution Overfull \hbox (103.41237pt too wide) in paragraph at lines 965--967 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (169.56235pt too wide) in paragraph at lines 967--969 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (186.79234pt too wide) in paragraph at lines 969--971 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution Overfull \hbox (192.59235pt too wide) in paragraph at lines 971--973 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (208.45236pt too wide) in paragraph at lines 973--975 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.SusceptibilityDistribution Overfull \hbox (106.18236pt too wide) in paragraph at lines 975--977 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualProperties Overfull \hbox (99.51236pt too wide) in paragraph at lines 977--979 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualProperty Overfull \hbox (83.16237pt too wide) in paragraph at lines 979--981 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.NodeAttributes Overfull \hbox (17.94235pt too wide) in paragraph at lines 981--983 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Updateable.Updateable Overfull \hbox (74.09238pt too wide) in paragraph at lines 983--985 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 985--987 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 987--989 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 989--990 []\T1/txtt/m/n/10 to_tuple() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 990--991 []\T1/txtt/m/n/10 Tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration prop- Underfull \hbox (badness 10000) in paragraph at lines 993--995 []\T1/txtt/m/n/10 triggered_campaign_delay_event() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (11.6218pt too wide) in paragraph at lines 995--997 []\T1/txtt/m/n/10 triggered_campaign_event_with_optional_delay() Underfull \hbox (badness 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lines 1012--1014 []\T1/txtt/m/n/10 units \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreports .channels.Channel Overfull \hbox (12.69237pt too wide) in paragraph at lines 1014--1016 []\T1/txtt/m/n/10 update() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographic s.Updateable.Updateable Overfull \hbox (11.73221pt too wide) in paragraph at lines 1016--1018 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.we ather.weather.Metadata Overfull \hbox (6.7322pt too wide) in paragraph at lines 1018--1020 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.we ather.weather.Weather Overfull \hbox (11.43234pt too wide) in paragraph at lines 1020--1021 []\T1/txtt/m/n/10 Updateable \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. demographics.Updateable\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1021--1023 []\T1/txtt/m/n/10 uses_old_waning() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) 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(62.11249pt too wide) in paragraph at lines 1039--1041 \T1/qtm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/qt m/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1041--1043 []\T1/txtt/m/n/10 write_default_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 1043--1045 []\T1/txtt/m/n/10 write_default_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 1043--1045 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 1045--1047 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (23.72227pt too wide) in paragraph at lines 1047--1049 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatial reports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 1049--1051 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 1051--1052 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 1055--1057 []\T1/txtt/m/n/10 xpix_ypix_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (63.76735pt too wide) in paragraph at lines 1060--1062 []\T1/txtt/m/n/10 YearlyRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), [92]) (./institute-for-disease-modeling-emod-api.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (96 pages, 198433 7 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Errors, in force_mode: so I tried finishing targets Collected error summary (may duplicate other messages): pdflatex: Command for 'pdflatex' gave return code 256