Read the Docs build information
Build id: 1639508
Project: tiledb-inc-tiledb
Version: latest
Commit: 5b80c2d2cab3b9e5bf5d660ffd83807804cce620
Date: 2023-08-03T15:47:08.022515Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2023-08-03T15:47:12.374363Z, end-time: 2023-08-03T15:47:14.232096Z, duration: 1, exit-code: 0
git clone --depth 1 https://github.com/TileDB-Inc/TileDB.git .
Cloning into '.'...

[rtd-command-info] start-time: 2023-08-03T15:47:14.475192Z, end-time: 2023-08-03T15:47:16.491378Z, duration: 2, exit-code: 0
git fetch origin --force --prune --prune-tags --depth 50 refs/heads/dev:refs/remotes/origin/dev


[rtd-command-info] start-time: 2023-08-03T15:47:16.796589Z, end-time: 2023-08-03T15:47:17.088117Z, duration: 0, exit-code: 0
git checkout --force origin/dev
Note: switching to 'origin/dev'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 5b80c2d Inline and remove `Status` from some trivial methods of `Array`. (#4226)

[rtd-command-info] start-time: 2023-08-03T15:47:17.367274Z, end-time: 2023-08-03T15:47:17.436361Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-08-03T15:47:17.877399Z, end-time: 2023-08-03T15:47:17.962214Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# Don't build any extra formats
formats: []

# Use RTD config version 2
# https://docs.readthedocs.io/en/stable/config-file/v2.html
version: 2

sphinx:
  configuration: tiledb/doxygen/source/conf.py

build:
  os: "ubuntu-22.04"
  tools:
    python: "3.8"

python:
  install:
    # this order is important: we need cmake to build doxygen XML for breathe
    - requirements: tiledb/doxygen/source/requirements.txt

[rtd-command-info] start-time: 2023-08-03T15:47:24.034039Z, end-time: 2023-08-03T15:47:24.141042Z, duration: 0, exit-code: 0
asdf global python 3.8.17


[rtd-command-info] start-time: 2023-08-03T15:47:24.935326Z, end-time: 2023-08-03T15:47:25.977649Z, duration: 1, exit-code: 0
python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.8.17.final.0-64 in 724ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/envs/latest, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==21.2.3, setuptools==57.4.0, wheel==0.37.0
  activators BashActivator,CShellActivator,FishActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2023-08-03T15:47:26.246024Z, end-time: 2023-08-03T15:47:37.479136Z, duration: 11, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/envs/latest/lib/python3.8/site-packages (21.2.3)
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  Downloading pip-23.2.1-py3-none-any.whl (2.1 MB)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb/envs/latest/lib/python3.8/site-packages (57.4.0)
Collecting setuptools
  Downloading setuptools-68.0.0-py3-none-any.whl (804 kB)
Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 57.4.0
    Uninstalling setuptools-57.4.0:
      Successfully uninstalled setuptools-57.4.0
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-23.2.1 setuptools-68.0.0

[rtd-command-info] start-time: 2023-08-03T15:47:37.817024Z, end-time: 2023-08-03T15:47:45.842705Z, duration: 8, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0
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  Obtaining dependency information for docutils>=0.11 from https://files.pythonhosted.org/packages/26/87/f238c0670b94533ac0353a4e2a1a771a0cc73277b88bff23d3ae35a256c1/docutils-0.20.1-py3-none-any.whl.metadata
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Building wheels for collected packages: mock
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  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23753 sha256=2de62587de337288d712572d8647735da58ab86c5c7b2c7634b95b095ede9dc1
  Stored in directory: /tmp/pip-ephem-wheel-cache-ty0blj8h/wheels/41/7c/21/90057f91c6ead7c77a90c52d6e85ca48bf82d8b0d3f8dfbb65
Successfully built mock
Installing collected packages: snowballstemmer, pytz, mock, commonmark, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed MarkupSafe-2.1.3 Pygments-2.15.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.7.22 charset-normalizer-3.2.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.1 pillow-10.0.0 pytz-2023.3 readthedocs-sphinx-ext-2.2.2 recommonmark-0.5.0 requests-2.31.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.0.4

[rtd-command-info] start-time: 2023-08-03T15:47:46.179747Z, end-time: 2023-08-03T15:47:51.371108Z, duration: 5, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r tiledb/doxygen/source/requirements.txt
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Installing collected packages: cmake, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Sphinx, sphinxcontrib-contentui, sphinx_rtd_theme, breathe
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[rtd-command-info] start-time: 2023-08-03T15:47:54.514635Z, end-time: 2023-08-03T15:47:54.572957Z, duration: 0, exit-code: 0
cat tiledb/doxygen/source/conf.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# TileDB documentation build configuration file, created by
# sphinx-quickstart on Mon Feb  5 10:08:37 2018.
#

# -- Imports configuration -------------------------------------------------

import os
import subprocess
import sys
from os.path import abspath, join, dirname

SCRIPT_PATH = abspath(join(dirname(__file__)))
sys.path.insert(0, SCRIPT_PATH)
TILEDB_SRC_PATH = abspath(join(SCRIPT_PATH, "../../../"))
TILEDB_BUILD_DIR = join(TILEDB_SRC_PATH, "build")

# -- ReadTheDocs configuration ---------------------------------------------

# Special handling on ReadTheDocs builds.
# Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py
readthedocs = os.environ.get('READTHEDOCS', None) == 'True'
rtd_version = os.environ.get('READTHEDOCS_VERSION', 'latest')
rtd_version = rtd_version if rtd_version in ['stable', 'latest'] else 'stable'

# On RTD, build the Doxygen XML files.
if readthedocs:
    # Build docs
    subprocess.check_call('''
        mkdir build;
        cd build;
        ../bootstrap;
        make doc;
    ''',
    shell=True,
    cwd=TILEDB_SRC_PATH)


# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.intersphinx',
    'sphinxcontrib.contentui',
    'breathe'
]

if readthedocs:
    # Mapping for linking between RTD subprojects.
    intersphinx_mapping = {
        'tiledb': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/' % rtd_version, None),
        'tiledb-py': ('https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/' % rtd_version, None)
    }

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
source_suffix = '.rst'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = 'TileDB'
copyright = '2023 TileDB, Inc'
author = 'TileDB, Inc.'

# The short X.Y version.
version = '2.17'
# The full version, including alpha/beta/rc tags.
release = '2.17.0'

# Breathe extension configuration.
doxygen_xml_dir = os.path.join(TILEDB_BUILD_DIR, 'xml/')
c_api_src_path = os.path.join(TILEDB_SRC_PATH, 'tiledb/sm/c_api/')
cpp_api_src_path = os.path.join(TILEDB_SRC_PATH, 'tiledb/sm/cpp_api/')
breathe_projects = {'TileDB-C': doxygen_xml_dir, 'TileDB-C++': doxygen_xml_dir}
breathe_default_project = 'TileDB-C'
breathe_projects_source = {
    'TileDB-C': (c_api_src_path, ['tiledb.h', 'tiledb_experimental.h', 'tiledb_serialization.h']),
    'TileDB-C++': (cpp_api_src_path, ['tiledb', 'tiledb_experimental'])
}
breathe_domain_by_file_pattern = {
    '*/c_api/tiledb.h': 'c',
    '*/c_api/tiledb_experimental.h': 'c',
    '*/c_api/tiledb_serialization.h': 'c',
    '*/cpp_api/tiledb': 'cpp',
    '*/cpp_api/tiledb_experimental': 'cpp',
}

# Allow parsing TILEDB_DEPRECATED in C++ function signatures.
cpp_id_attributes = ['TILEDB_DEPRECATED']
c_id_attributes = ['TILEDB_EXPORT', 'TILEDB_NOEXCEPT', 'TILEDB_DEPRECATED_EXPORT']

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = []

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'friendly'

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False


# -- Options for HTML output ----------------------------------------------

html_static_path = ['../../../doc/source/_static']
html_logo = os.path.join(html_static_path[0], 'tiledb-logo_color_no_margin_@4x.png')
html_favicon = os.path.join(html_static_path[0], 'favicon.ico')

if readthedocs:
    html_theme = 'default'
else:
    import sphinx_rtd_theme
    html_theme = 'sphinx_rtd_theme'
    html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# -- Options for HTMLHelp output ------------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = 'TileDBdoc'


# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'TileDB.tex', 'TileDB Documentation',
     'TileDB, Inc.', 'manual'),
]


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'tiledb', 'TileDB Documentation',
     [author], 1)
]


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'TileDB', 'TileDB Documentation',
     author, 'TileDB', 'One line description of project.',
     'Miscellaneous'),
]

# -- Custom Document processing ----------------------------------------------

# Generate the sidebar automatically so that it is identical across all subprojects.
# This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs
import gensidebar
gensidebar.generate_sidebar({'on_rtd': readthedocs, 'rtd_version': rtd_version}, 'tiledb')

# Replace C/C++ source examples path
def replaceText(app, docname, source):
    result = source[0]
    for key in app.config.text_replacements:
        result = result.replace(key, app.config.text_replacements[key])
    source[0] = result

text_replacements = {
    "{source_examples_path}" : "../../examples",
    "{tiledb_src_root_url}" : "https://github.com/TileDB-Inc/TileDB/blob/dev",
    "{tiledb_py_src_root_url}" : "https://github.com/TileDB-Inc/TileDB-Py/blob/dev",
    "{tiledb_R_src_root_url}" : "https://github.com/TileDB-Inc/TileDB-R/blob/master",
    "{tiledb_go_src_root_url}" : "https://github.com/TileDB-Inc/TileDB-Go/blob/master"
}

# -- Custom setup -----------------------------------------------------------

def add_custom_js(app):
    app.add_js_file('custom.js')

def setup(app):
    app.add_config_value('text_replacements', {}, True)
    app.connect('source-read', replaceText)
    app.add_css_file('custom.css')

    # Use this event so that our custom JS gets included *after* the ContentUI
    # extension adds its JS, otherwise we can't override its behavior.
    app.connect('builder-inited', add_custom_js)




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#
# Note: this file shouldn't rely on extra dependencies.

import importlib
import sys
import os.path

# Borrowed from six.
PY3 = sys.version_info[0] == 3
string_types = str if PY3 else basestring

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}


# This following legacy behavior will gradually be sliced out until its deprecated and removed.
# Skipped for Sphinx 6+
# Skipped by internal Feature flag SKIP_SPHINX_HTML_THEME_PATH
# Skipped by all new projects since SKIP_SPHINX_HTML_THEME_PATH's introduction (jan 2023)
if (
        using_rtd_theme
        and version_info < (6,0)
        and not False
    ):
    theme = importlib.import_module('sphinx_rtd_theme')
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

# Define websupport2_base_url and websupport2_static_url
if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://assets.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://assets.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'proxied_static_path': "/_/static/",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("1.7.3", "/en/1.7.3/"),
    ("1.6.3", "/en/1.6.3/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
        ("tiledb-inc-tiledb-py", "https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/tiledb-py/en/stable/"),
    ],
    'slug': 'tiledb-inc-tiledb',
    'name': u'TileDB',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': '',
    'analytics_code': 'G-W0J7K3XGLY',
    'single_version': False,
    'conf_py_path': '/tiledb/doxygen/source/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'TileDB-Inc',
    'proxied_api_host': '/_',
    'github_repo': 'TileDB',
    'github_version': 'dev',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'dev',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'dev',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': 'G-W0J7K3XGLY',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '5b80c2d2',
}

# For sphinx >=1.8 we can use html_baseurl to set the canonical URL.
# https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl
if version_info >= (1, 8):
    if not globals().get('html_baseurl'):
        html_baseurl = context['canonical_url']
    context['canonical_url'] = None





if 'html_context' in globals():
    for key in context:
        if key not in html_context:
            html_context[key] = context[key]
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")
    readthedocs_vcs_url = 'None'
    readthedocs_build_url = 'https://readthedocs.com/projects/tiledb-inc-tiledb/builds/1639508/'

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])