Read the Docs build information Build id: 1583124 Project: institute-for-disease-modeling-emod-api Version: latest Commit: 5d94c46376f087bb7442f18955931068102d261e Date: 2023-07-06T21:54:59.837174Z State: finished Success: True [rtd-command-info] start-time: 2023-07-06T21:55:06.730333Z, end-time: 2023-07-06T21:55:08.942699Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.113' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2023-07-06T21:55:09.573083Z, end-time: 2023-07-06T21:55:10.031492Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: switching to 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 5d94c46 Pre release bump + test patch (#631) [rtd-command-info] start-time: 2023-07-06T21:55:10.447441Z, end-time: 2023-07-06T21:55:10.511840Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-07-06T21:55:10.930376Z, end-time: 2023-07-06T21:55:10.995382Z, duration: 0, exit-code: 0 cat .readthedocs.yml # .readthedocs.yml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py fail_on_warning: true # Build documentation with MkDocs #mkdocs: # configuration: mkdocs.yml # Optionally build your docs in additional formats such as PDF formats: - htmlzip - pdf # Optionally set the version of Python and requirements required to build your docs python: version: 3.7 install: - requirements: requirements.txt - requirements: docs/requirements.txt - method: setuptools path: . system_packages: true # Optionally rank topics in search results, between -10 (lower) and 10 (higher). # 0 is normal rank, not no rank # search: # ranking: [rtd-command-info] start-time: 2023-07-06T21:55:14.260266Z, end-time: 2023-07-06T21:55:21.054873Z, duration: 6, exit-code: 0 python3.7 -mvirtualenv --system-site-packages $READTHEDOCS_VIRTUALENV_PATH Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2023-07-06T21:55:21.544201Z, end-time: 2023-07-06T21:55:23.614609Z, duration: 2, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (23.1.2) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 27.0 MB/s eta 0:00:00 Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 68.0.0 Uninstalling setuptools-68.0.0: Successfully uninstalled setuptools-68.0.0 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2023-07-06T21:55:24.066550Z, end-time: 2023-07-06T21:55:33.032384Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I pillow==5.4.1 mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0 setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 39.0 MB/s eta 0:00:00 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 218.9 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl (13 kB) Collecting commonmark==0.9.1 Downloading commonmark-0.9.1-py2.py3-none-any.whl (51 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 51.1/51.1 kB 159.3 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filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=dcc91fc77e2c4f809b7343bed3ed6f48ba5a908fe67baae0c8583737d023cade Stored in directory: /tmp/pip-ephem-wheel-cache-pds2kqrc/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Successfully built mock Installing collected packages: snowballstemmer, pytz, mock, commonmark, urllib3, sphinxcontrib-serializinghtml, six, setuptools, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.5.3 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. Successfully installed MarkupSafe-2.1.3 Pygments-2.15.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.5.7 charset-normalizer-3.1.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.1 pillow-5.4.1 pytz-2023.3 readthedocs-sphinx-ext-2.2.2 recommonmark-0.5.0 requests-2.31.0 setuptools-58.2.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.0.3 [rtd-command-info] start-time: 2023-07-06T21:55:33.522675Z, end-time: 2023-07-06T21:55:40.751567Z, duration: 7, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: numpy!=1.19.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.21.6) Collecting pyyaml (from -r requirements.txt 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12)) Downloading parse-1.19.1-py2.py3-none-any.whl (18 kB) Requirement already satisfied: matplotlib in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 13)) (3.5.3) Requirement already satisfied: python-dateutil>=2.7.3 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2.8.2) Requirement already satisfied: pytz>=2017.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2023.3) Requirement already satisfied: certifi in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pyproj->-r requirements.txt (line 6)) (2023.5.7) Collecting joblib>=0.11 (from scikit-learn->-r requirements.txt (line 8)) Downloading joblib-1.3.1-py3-none-any.whl (301 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 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filename=prodict-0.8.18-py3-none-any.whl size=4224 sha256=a01589aedb4f63910728b65cea39627a77c95b7df5b0fbc82f965e9c218af3d6 Stored in directory: /tmp/pip-ephem-wheel-cache-bz3o8cop/wheels/a8/e6/67/cda708a2cd06853a75a33ecab7ade9eda84e962a7635406c70 Successfully built prodict Installing collected packages: prodict, parse, threadpoolctl, shapely, pyyaml, pyproj, pillow, lz4, joblib, graphviz, geographiclib, scikit-learn Attempting uninstall: pillow Found existing installation: Pillow 5.4.1 Uninstalling Pillow-5.4.1: Successfully uninstalled Pillow-5.4.1 Successfully installed geographiclib-2.0 graphviz-0.20.1 joblib-1.3.1 lz4-4.3.2 parse-1.19.1 pillow-9.5.0 prodict-0.8.18 pyproj-3.2.1 pyyaml-6.0 scikit-learn-1.0.2 shapely-2.0.1 threadpoolctl-3.1.0 [rtd-command-info] start-time: 2023-07-06T21:55:41.119284Z, end-time: 2023-07-06T21:55:46.110787Z, duration: 4, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting sphinx-rtd-theme~=0.5.0 (from -r docs/requirements.txt (line 1)) Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.1/9.1 MB 110.1 MB/s eta 0:00:00 Collecting sphinxcontrib-napoleon~=0.7 (from -r docs/requirements.txt (line 2)) Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=4.4.0 (from -r docs/requirements.txt (line 3)) Downloading Sphinx-4.4.0-py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 183.0 MB/s eta 0:00:00 Collecting plantweb~=1.2.1 (from -r docs/requirements.txt (line 4)) Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.16 (from -r docs/requirements.txt (line 5)) Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting sphinxext.remoteliteralinclude (from -r docs/requirements.txt (line 6)) Downloading sphinxext_remoteliteralinclude-0.4.0-py3-none-any.whl (6.4 kB) Collecting sphinx-copybutton~=0.4.0 (from -r docs/requirements.txt (line 7)) Downloading sphinx_copybutton-0.4.0-py3-none-any.whl (12 kB) Collecting docutils<0.17 (from sphinx-rtd-theme~=0.5.0->-r docs/requirements.txt (line 1)) Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 548.2/548.2 kB 215.3 MB/s eta 0:00:00 Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 2)) (1.16.0) Collecting pockets>=0.3 (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 2)) Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Collecting sphinxcontrib-applehelp (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.2/121.2 kB 187.1 MB/s eta 0:00:00 Collecting sphinxcontrib-devhelp (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 kB 177.8 MB/s eta 0:00:00 Collecting sphinxcontrib-jsmath (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.5/100.5 kB 142.9 MB/s eta 0:00:00 Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (1.1.5) Collecting sphinxcontrib-qthelp (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.6/90.6 kB 182.0 MB/s eta 0:00:00 Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (3.0.3) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2.15.1) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2.2.0) 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babel>=1.3->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2023.3) Collecting zipp>=0.5 (from importlib-metadata>=4.4->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading zipp-3.15.0-py3-none-any.whl (6.8 kB) Requirement already satisfied: typing-extensions>=3.6.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from importlib-metadata>=4.4->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (4.5.0) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (3.1.0) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (3.4) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2.0.3) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2023.5.7) Installing collected packages: zipp, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pockets, MarkupSafe, docutils, sphinxcontrib-napoleon, plantweb, Jinja2, importlib-metadata, sphinxext.remoteliteralinclude, sphinx, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton Attempting uninstall: MarkupSafe Found existing installation: MarkupSafe 2.1.3 Uninstalling MarkupSafe-2.1.3: Successfully uninstalled MarkupSafe-2.1.3 Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: Jinja2 Found existing installation: Jinja2 3.0.3 Uninstalling Jinja2-3.0.3: Successfully uninstalled Jinja2-3.0.3 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed Jinja2-2.11.3 MarkupSafe-2.0.1 docutils-0.16 importlib-metadata-6.7.0 plantweb-1.2.1 pockets-0.9.1 sphinx-4.4.0 sphinx-copybutton-0.4.0 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.4.0 zipp-3.15.0 [rtd-command-info] start-time: 2023-07-06T21:55:46.703003Z, end-time: 2023-07-06T21:55:47.708748Z, duration: 1, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/setuptools/dist.py:487: UserWarning: Normalizing '1.29.0pre0' to '1.29.0rc0' warnings.warn(tmpl.format(**locals())) warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' adding license file 'LICENSE' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/spatial_report.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/property_report_to_csv.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/peek_camp.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api copying emod_api/multidim_plotter.py -> build/lib/emod_api creating build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather creating build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/plot_icj_means.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/plot_prop_report.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/icj_to_csv.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/utils.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/PreDefinedDistributions.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/Updateable.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/PropertiesAndAttributes.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/plot_spat_means.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization creating build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config creating build/lib/emod_api/legacy copying emod_api/legacy/plotAllCharts.py -> build/lib/emod_api/legacy copying emod_api/legacy/__init__.py -> build/lib/emod_api/legacy creating build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl_viz.py -> build/lib/emod_api/interventions copying emod_api/interventions/migration.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/demographics/service copying emod_api/demographics/service/service.py -> build/lib/emod_api/demographics/service copying emod_api/demographics/service/__init__.py -> build/lib/emod_api/demographics/service copying emod_api/demographics/service/grid_construction.py -> build/lib/emod_api/demographics/service creating build/lib/emod_api/migration/client copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/test_properties_and_attributes.py -> build/lib/tests/unittests copying tests/unittests/test_version.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/property_report_to_csv.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/plot_icj_means.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/plot_prop_report.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/icj_to_csv.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/utils.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/peek_camp.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics creating build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/service.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/service/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics/service copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PreDefinedDistributions.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Updateable.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PropertiesAndAttributes.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/plot_spat_means.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/legacy/plotAllCharts.py -> build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/legacy/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/multidim_plotter.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration creating build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl_viz.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/migration.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_properties_and_attributes.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/property_report_to_csv.py to property_report_to_csv.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_icj_means.py to plot_icj_means.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_prop_report.py to plot_prop_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/icj_to_csv.py to icj_to_csv.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/peek_camp.py to peek_camp.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/service.py to service.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/service/grid_construction.py to grid_construction.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PreDefinedDistributions.py to PreDefinedDistributions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Updateable.py to Updateable.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PropertiesAndAttributes.py to PropertiesAndAttributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/plot_spat_means.py to plot_spat_means.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/legacy/plotAllCharts.py to plotAllCharts.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/legacy/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/multidim_plotter.py to multidim_plotter.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl.py to ccdl.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl_viz.py to ccdl_viz.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_properties_and_attributes.py to test_properties_and_attributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-37: module references __file__ emod_api.spatialreports.__pycache__.__main__.cpython-37: module references __file__ examples.__pycache__.insetchart.cpython-37: module references __file__ examples.__pycache__.property_report_to_csv.cpython-37: module references __file__ examples.__pycache__.spatial_report.cpython-37: module references __file__ examples.__pycache__.weather_file.cpython-37: module references __file__ creating dist creating 'dist/emod_api-1.29.0rc0-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.29.0rc0-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.29.0rc0-py3.7.egg Extracting emod_api-1.29.0rc0-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Adding emod-api 1.29.0rc0 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.29.0rc0-py3.7.egg Processing dependencies for emod-api==1.29.0rc0 Searching for matplotlib==3.5.3 Best match: matplotlib 3.5.3 Adding matplotlib 3.5.3 to easy-install.pth file Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for parse==1.19.1 Best match: parse 1.19.1 Adding parse 1.19.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for graphviz==0.20.1 Best match: graphviz 0.20.1 Adding graphviz 0.20.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for lz4==4.3.2 Best match: lz4 4.3.2 Adding lz4 4.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scikit-learn==1.0.2 Best match: scikit-learn 1.0.2 Adding scikit-learn 1.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for geographiclib==2.0 Best match: geographiclib 2.0 Adding geographiclib 2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.2.1 Best match: pyproj 3.2.1 Adding pyproj 3.2.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for shapely==2.0.1 Best match: shapely 2.0.1 Adding shapely 2.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scipy==1.7.3 Best match: scipy 1.7.3 scipy 1.7.3 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pandas==1.3.5 Best match: pandas 1.3.5 pandas 1.3.5 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for PyYAML==6.0 Best match: PyYAML 6.0 Adding PyYAML 6.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for numpy==1.21.6 Best match: numpy 1.21.6 numpy 1.21.6 is already the active version in easy-install.pth Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for cycler==0.11.0 Best match: cycler 0.11.0 cycler 0.11.0 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for packaging==23.1 Best match: packaging 23.1 Adding packaging 23.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for kiwisolver==1.4.4 Best match: kiwisolver 1.4.4 kiwisolver 1.4.4 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pyparsing==3.0.9 Best match: pyparsing 3.0.9 pyparsing 3.0.9 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 python-dateutil 2.8.2 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for fonttools==4.38.0 Best match: fonttools 4.38.0 fonttools 4.38.0 is already the active version in easy-install.pth Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for Pillow==9.5.0 Best match: Pillow 9.5.0 Adding Pillow 9.5.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for joblib==1.3.1 Best match: joblib 1.3.1 Adding joblib 1.3.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for threadpoolctl==3.1.0 Best match: threadpoolctl 3.1.0 Adding threadpoolctl 3.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for certifi==2023.5.7 Best match: certifi 2023.5.7 Adding certifi 2023.5.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pytz==2023.3 Best match: pytz 2023.3 Adding pytz 2023.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for typing-extensions==4.5.0 Best match: typing-extensions 4.5.0 typing-extensions 4.5.0 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Finished processing dependencies for emod-api==1.29.0rc0 [rtd-command-info] start-time: 2023-07-06T21:55:55.821099Z, end-time: 2023-07-06T21:55:55.890851Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "emod-api" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ tags.add('emodapi') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude', 'sphinx.ext.viewcode' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emod-api' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} # This following legacy behavior will gradually be sliced out until its deprecated and removed. # Skipped for Sphinx 6+ # Skipped by internal Feature flag SKIP_SPHINX_HTML_THEME_PATH # Skipped by all new projects since SKIP_SPHINX_HTML_THEME_PATH's introduction (jan 2023) if ( using_rtd_theme and version_info < (6,0) and not False ): theme = importlib.import_module('sphinx_rtd_theme') if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] # Define websupport2_base_url and websupport2_static_url if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.28.5", "/en/v1.28.5/"), ("v1.28.1", "/en/v1.28.1/"), ("v1.27.4", "/en/v1.27.4/"), ("v1.27.1", "/en/v1.27.1/"), ("v1.26.1", "/en/v1.26.1/"), ("v1.25.1", "/en/v1.25.1/"), ("v1.24.11", "/en/v1.24.11/"), ("v1.24.8", "/en/v1.24.8/"), ("v1.24.1", "/en/v1.24.1/"), ("v1.23.2", "/en/v1.23.2/"), ("v1.23.1", "/en/v1.23.1/"), ("v1.22.11", "/en/v1.22.11/"), ("v1.22.10", "/en/v1.22.10/"), ("v1.22.9", "/en/v1.22.9/"), ("v1.22.1", "/en/v1.22.1/"), ("v1.22.0", "/en/v1.22.0/"), ("v1.21.1", "/en/v1.21.1/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.20.1", "/en/v1.20.1/"), ("v1.19.13", "/en/v1.19.13/"), ("v1.19.2", "/en/v1.19.2/"), ("v1.18.1", "/en/v1.18.1/"), ("v1.17.4", "/en/v1.17.4/"), ("v1.17.3", "/en/v1.17.3/"), ("v1.17.2", "/en/v1.17.2/"), ("v1.16.10", "/en/v1.16.10/"), ("v1.16.5", "/en/v1.16.5/"), ("v1.16.2", "/en/v1.16.2/"), ("v1.15.6", "/en/v1.15.6/"), ("v1.15.4", "/en/v1.15.4/"), ("v1.15.1", "/en/v1.15.1/"), ("v1.14.7", "/en/v1.14.7/"), ("v1.14.1", "/en/v1.14.1/"), ("v1.13.1", "/en/v1.13.1/"), ("v1.12.1", "/en/v1.12.1/"), ("v1.11.7", "/en/v1.11.7/"), ("v1.11.4", "/en/v1.11.4/"), ("v1.11.0", "/en/v1.11.0/"), ("v1.10.8", "/en/v1.10.8/"), ("v1.10.6", "/en/v1.10.6/"), ("v1.10.5", "/en/v1.10.5/"), ("v1.10.3", "/en/v1.10.3/"), ("v1.10.2", "/en/v1.10.2/"), ("v1.9.2", "/en/v1.9.2/"), ("v1.9.1", "/en/v1.9.1/"), ("v1.8.9", "/en/v1.8.9/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emod-api/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': '', 'analytics_code': 'G-SVDSQH04EM', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'G-SVDSQH04EM', 'global_analytics_code': 'UA-17997319-2', 'commit': '5d94c463', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): for key in context: if key not in html_context: html_context[key] = context[key] else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/1583124/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2023-07-06T21:55:56.369468Z, end-time: 2023-07-06T21:57:00.155326Z, duration: 63, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 72 source files that are out of date updating environment: [new config] 72 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 2%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 5%] emod_api.channelreports.channels reading sources... [ 6%] emod_api.channelreports.icj_to_csv reading sources... [ 8%] emod_api.channelreports.plot_icj_means Matplotlib is building the font cache; this may take a moment. reading sources... [ 9%] emod_api.channelreports.plot_prop_report reading sources... [ 11%] emod_api.channelreports.utils reading sources... [ 12%] emod_api.config reading sources... [ 13%] emod_api.config.default_from_schema reading sources... [ 15%] emod_api.config.default_from_schema_no_validation reading sources... [ 16%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 19%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 22%] emod_api.config.from_poi_and_binary reading sources... 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[ 93%] emod_api.serialization.dtkFileTools highlighting module code... [ 95%] emod_api.spatialreports.plot_spat_means highlighting module code... [ 97%] emod_api.spatialreports.spatial highlighting module code... [100%] emod_api.weather.weather writing additional pages... search opensearch done copying images... [ 20%] images/fertility_over_time_doc.png copying images... [ 40%] images/sweep_plot.png copying images... [ 60%] images/spat_plot.png copying images... [ 80%] images/prop_plot.png copying images... [100%] images/colormap_plot.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in ../_readthedocs/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2023-07-06T21:57:00.631168Z, end-time: 2023-07-06T21:57:13.630421Z, duration: 12, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 72 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 2%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 5%] emod_api.channelreports.channels reading sources... [ 6%] emod_api.channelreports.icj_to_csv reading sources... [ 8%] emod_api.channelreports.plot_icj_means reading sources... [ 9%] emod_api.channelreports.plot_prop_report reading sources... [ 11%] emod_api.channelreports.utils reading sources... [ 12%] emod_api.config reading sources... [ 13%] emod_api.config.default_from_schema reading sources... [ 15%] emod_api.config.default_from_schema_no_validation reading sources... [ 16%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 19%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 22%] emod_api.config.from_poi_and_binary reading sources... [ 23%] emod_api.config.from_schema reading sources... [ 25%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 26%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 30%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 33%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 38%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 41%] emod_api.demographics.service reading sources... [ 43%] emod_api.demographics.service.grid_construction reading sources... [ 44%] emod_api.demographics.service.service reading sources... [ 45%] emod_api.interventions reading sources... [ 47%] emod_api.interventions.ccdl reading sources... [ 48%] emod_api.interventions.ccdl_viz reading sources... [ 50%] emod_api.interventions.common reading sources... [ 51%] emod_api.interventions.import_pressure reading sources... [ 52%] emod_api.interventions.migration reading sources... [ 54%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 58%] emod_api.interventions.utils reading sources... [ 59%] emod_api.legacy reading sources... [ 61%] emod_api.legacy.plotAllCharts no display found. Using non-interactive Agg backend reading sources... [ 62%] emod_api.migration reading sources... [ 63%] emod_api.migration.client reading sources... [ 65%] emod_api.migration.client.client reading sources... [ 66%] emod_api.migration.migration reading sources... [ 68%] emod_api.multidim_plotter reading sources... [ 69%] emod_api.peek_camp reading sources... [ 70%] emod_api.schema reading sources... [ 72%] emod_api.schema.dtk_post_process_schema reading sources... [ 73%] emod_api.schema.get_schema reading sources... [ 75%] emod_api.schema_to_class reading sources... [ 76%] emod_api.serialization reading sources... [ 77%] emod_api.serialization.CensusAndModPop reading sources... [ 79%] emod_api.serialization.SerializedPopulation reading sources... [ 80%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 83%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.plot_spat_means reading sources... [ 87%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 90%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] faq reading sources... [ 94%] glossary reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [ 98%] modules reading sources... [100%] plotters looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.channelreports.icj_to_csv emod_api.channelreports.plot_icj_means emod_api.channelreports.plot_prop_report emod_api.channelreports.utils emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.service emod_api.demographics.service.grid_construction emod_api.demographics.service.service emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.legacy emod_api.legacy.plotAllCharts emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.plot_spat_means emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.multidim_plotter emod_api.peek_camp emod_api.schema_to_class glossary plotters done writing... done writing additional files... opensearchdone copying images... [ 20%] images/fertility_over_time_doc.png copying images... [ 40%] images/sweep_plot.png copying images... [ 60%] images/spat_plot.png copying images... [ 80%] images/prop_plot.png copying images... [100%] images/colormap_plot.png copying static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in ../_readthedocs/htmlzip. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2023-07-06T21:57:15.041966Z, end-time: 2023-07-06T21:57:27.832562Z, duration: 12, exit-code: 0 python -m sphinx -T -E -b latex -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/pdf Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [new config] 72 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 2%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 5%] emod_api.channelreports.channels reading sources... [ 6%] emod_api.channelreports.icj_to_csv reading sources... [ 8%] emod_api.channelreports.plot_icj_means reading sources... [ 9%] emod_api.channelreports.plot_prop_report reading sources... [ 11%] emod_api.channelreports.utils reading sources... [ 12%] emod_api.config reading sources... [ 13%] emod_api.config.default_from_schema reading sources... [ 15%] emod_api.config.default_from_schema_no_validation reading sources... [ 16%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 19%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 22%] emod_api.config.from_poi_and_binary reading sources... [ 23%] emod_api.config.from_schema reading sources... [ 25%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 26%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 29%] emod_api.demographics.Demographics reading sources... [ 30%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 33%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 38%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 41%] emod_api.demographics.service reading sources... [ 43%] emod_api.demographics.service.grid_construction reading sources... [ 44%] emod_api.demographics.service.service reading sources... [ 45%] emod_api.interventions reading sources... [ 47%] emod_api.interventions.ccdl reading sources... [ 48%] emod_api.interventions.ccdl_viz reading sources... [ 50%] emod_api.interventions.common reading sources... [ 51%] emod_api.interventions.import_pressure reading sources... [ 52%] emod_api.interventions.migration reading sources... [ 54%] emod_api.interventions.node_multiplier reading sources... [ 55%] emod_api.interventions.outbreak reading sources... [ 56%] emod_api.interventions.simple_vaccine reading sources... [ 58%] emod_api.interventions.utils reading sources... [ 59%] emod_api.legacy reading sources... [ 61%] emod_api.legacy.plotAllCharts no display found. Using non-interactive Agg backend reading sources... [ 62%] emod_api.migration reading sources... [ 63%] emod_api.migration.client reading sources... [ 65%] emod_api.migration.client.client reading sources... [ 66%] emod_api.migration.migration reading sources... [ 68%] emod_api.multidim_plotter reading sources... [ 69%] emod_api.peek_camp reading sources... [ 70%] emod_api.schema reading sources... [ 72%] emod_api.schema.dtk_post_process_schema reading sources... [ 73%] emod_api.schema.get_schema reading sources... [ 75%] emod_api.schema_to_class reading sources... [ 76%] emod_api.serialization reading sources... [ 77%] emod_api.serialization.CensusAndModPop reading sources... [ 79%] emod_api.serialization.SerializedPopulation reading sources... [ 80%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 83%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 86%] emod_api.spatialreports.plot_spat_means reading sources... [ 87%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 90%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 93%] faq reading sources... [ 94%] glossary reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [ 98%] modules reading sources... [100%] plotters looking for now-outdated files... none found pickling environment... done checking consistency... done processing emod-api-docs.tex... index installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.channelreports.icj_to_csv emod_api.channelreports.plot_icj_means emod_api.channelreports.plot_prop_report emod_api.channelreports.utils emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.service emod_api.demographics.service.grid_construction emod_api.demographics.service.service emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.legacy emod_api.legacy.plotAllCharts emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.plot_spat_means emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.multidim_plotter emod_api.peek_camp emod_api.schema_to_class glossary plotters resolving references... done writing... done copying images... [ 20%] images/fertility_over_time_doc.png copying images... [ 40%] images/sweep_plot.png copying images... [ 60%] images/spat_plot.png copying images... [ 80%] images/prop_plot.png copying images... [100%] images/colormap_plot.png copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in ../_readthedocs/pdf. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/latest/_readthedocs/pdf/_static/searchtools.js [rtd-command-info] start-time: 2023-07-06T21:57:28.882139Z, end-time: 2023-07-06T21:57:28.952673Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2023-07-06T21:57:29.385674Z, end-time: 2023-07-06T21:57:35.709133Z, duration: 6, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emod-api -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emod-api-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] [1] [2] Chapter 1. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4] Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 246--251 []\T1/qtm/m/n/10 Sure. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 309--312 []\T1/qtm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 313--316 []\T1/qtm/m/n/10 python -m [7] LaTeX Warning: Hyper reference `emod_api.channelreports.channels:emod_api.chann elreports.channels.Header' on page 8 undefined on input line 1. [8] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [9] [10] [11] Underfull \hbox (badness 10000) in paragraph at lines 944--947 []\T1/qtm/m/n/10 con-fig = json.load(open(^^Pdefault_config.json^^Q), ob-ject_h ook=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (23.04372pt too wide) in paragraph at lines 953--953 []\T1/qtm/m/it/10 path_to_schema\T1/qtm/m/n/10 , Overfull \hbox (37.0137pt too wide) in paragraph at lines 953--953 \T1/qtm/m/it/10 schema_node=True\T1/qtm/m/n/10 , Overfull \hbox (13.74374pt too wide) in paragraph at lines 953--953 \T1/qtm/m/it/10 as_rod=False\T1/qtm/m/n/10 , Overfull \hbox (40.01373pt too wide) in paragraph at lines 953--953 \T1/qtm/m/it/10 put_filename=None\T1/txtt/m/n/10 )| Overfull \hbox (70.57379pt too wide) in paragraph at lines 968--968 \T1/qtm/m/it/10 put_filename=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 default_config.j son\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (13.51376pt too wide) in paragraph at lines 968--968 \T1/qtm/m/it/10 schema_node=True\T1/txtt/m/n/10 )| Overfull \hbox (53.72368pt too wide) in paragraph at lines 998--998 []\T1/qtm/m/it/10 config_path=None\T1/qtm/m/n/10 , Overfull \hbox (30.34369pt too wide) in paragraph at lines 998--998 \T1/qtm/m/it/10 set_fn=None\T1/qtm/m/n/10 , Overfull \hbox (19.35367pt too wide) in paragraph at lines 998--998 \T1/qtm/m/it/10 fig=None\T1/txtt/m/n/10 )| Overfull \hbox (36.61365pt too wide) in paragraph at lines 1033--1033 []\T1/qtm/m/it/10 config_path\T1/qtm/m/n/10 , Overfull \hbox (13.23366pt too wide) in paragraph at lines 1033--1033 \T1/qtm/m/it/10 set_fn\T1/qtm/m/n/10 , Overfull \hbox (4.76366pt too wide) in paragraph at lines 1033--1033 \T1/qtm/m/it/10 con- Overfull \hbox (42.7586pt too wide) in paragraph at lines 1033--1033 \T1/qtm/m/it/10 fig_out_path\T1/txtt/m/n/10 )| [12] [13] Underfull \hbox (badness 10000) in paragraph at lines 1226--1229 []\T1/qtm/m/n/10 builder = s2c.SchemaConfigBuilder( LaTeX Warning: Hyper reference `emod_api.config.from_schema:emod_api.config.fro m_schema.SchemaConfigBuilder' on page 14 undefined on input line 1251. 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[16] [17] Overfull \hbox (2.44467pt too wide) in paragraph at lines 1732--1732 []\T1/qtm/m/it/10 crude_birth_rate=] Overfull \hbox (377.44386pt too wide) in paragraph at lines 2300--2300 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (349.59387pt too wide) in paragraph at lines 2300--2300 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox (5.45383pt too wide) in paragraph at lines 2300--2300 \T1/qtm/m/it/10 res_in_arcsec=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 custom\TS1/qtm/ m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (35.91386pt too wide) in paragraph at lines 2300--2300 \T1/qtm/m/it/10 node_id_from_lat_long=False\T1/txtt/m/n/10 )| [23] Overfull \hbox (309.19406pt too wide) in paragraph at lines 2401--2401 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (281.34407pt too wide) in paragraph at lines 2401--2401 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox (9.76408pt too wide) in paragraph at lines 2401--2401 \T1/qtm/m/it/10 load_other_columns_as_attributes=False\T1/qtm/m/n/10 , [24] Overfull \hbox (282.94414pt too wide) in paragraph at lines 2480--2480 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (255.09415pt too wide) in paragraph at lines 2480--2480 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] [25] Overfull \hbox (34.91383pt too wide) in paragraph at lines 2568--2568 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (13.9139pt too wide) in paragraph at lines 2580--2580 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (34.55377pt too wide) in paragraph at lines 2586--2586 \T1/qtm/m/it/10 tra_data_columns=[]\T1/qtm/m/n/10 , Overfull \hbox (66.41374pt too wide) in paragraph at lines 2586--2586 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| LaTeX Warning: Hyper reference `emod_api.demographics.DemographicsTemplates:emo d_api.demographics.DemographicsTemplates.CrudeRate' on page 26 undefined on inp ut line 2612. 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Underfull \hbox (badness 10000) in paragraph at lines 4193--4195 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is Overfull \hbox (2.75383pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 ip_targeting=None\T1/qtm/m/n/10 , Overfull \hbox (10.51382pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 get_age_max=45625\T1/qtm/m/n/10 , Overfull \hbox (29.36382pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 get_residents_only=False\T1/qtm/m/n/10 , Overfull \hbox (24.73378pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 check_at_trigger=False\T1/txtt/m/n/10 )| [41] Underfull \hbox (badness 10000) in paragraph at lines 4247--4249 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [42] [43] [44] [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 []\T1/qtm/m/n/10 {^^PDu-ra-tion_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DIST RIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 []\T1/qtm/m/n/10 {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTIO N^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 \T1/qtm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 \T1/qtm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- [47] Overfull \hbox (17.85501pt too wide) in paragraph at lines 4805--4810 \T1/qtm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (55.02502pt too wide) in paragraph at lines 4805--4810 \T1/qtm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4811--4817 []\T1/qtm/m/n/10 du-ra- ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4840 ...{CONST(ANT)}] \leavevmode\begin{itemize} [48] [49] [50] [51] Underfull \hbox (badness 10000) in paragraph at lines 5374--5378 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [52] [53] LaTeX Warning: Hyper reference `emod_api.migration.migration:emod_api.migration .migration.Migration' on page 54 undefined on input line 5674. Overfull \hbox (57.54393pt too wide) in paragraph at lines 5674--5674 \T1/qtm/m/it/10 emod_api.migration.migration.Migration| [54] [55] [56] [57] LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileSupport:emod_api. serialization.dtkFileSupport.SerialObject' on page 58 undefined on input line 6 104. 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[59] LaTeX Warning: Hyper reference `emod_api.spatialreports.spatial:emod_api.spatia lreports.spatial.SpatialNode' on page 60 undefined on input line 1. [60] [61] LaTeX Warning: Hyper reference `emod_api.weather.weather:emod_api.weather.weath er.Metadata' on page 62 undefined on input line 1. [62] LaTeX Warning: Hyper reference `emod_api.weather.weather:emod_api.weather.weath er.WeatherNode' on page 63 undefined on input line 1. Underfull \hbox (badness 6842) in paragraph at lines 6850--6853 []\T1/qtm/m/n/10 Set the (path to) the schema file. And re-set all cam-paign va ri-ables. This is es-sen-tially a [63] [64] [65] [66] Chapter 4. [67] [68] Chapter 5. [69] [70] Chapter 6. LaTeX Warning: Hyper reference `emod_api.channelreports.plot_icj_means:module-e mod_api.channelreports.plot_icj_means' on page 71 undefined on input line 7192. Underfull \hbox (badness 10000) in paragraph at lines 7206--7208 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_icj_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [[]t [71] [72 <./sweep_plot.png>] Chapter 7. LaTeX Warning: Hyper reference `emod_api.spatialreports.plot_spat_means:module- emod_api.spatialreports.plot_spat_means' on page 73 undefined on input line 724 4. Underfull \hbox (badness 10000) in paragraph at lines 7257--7259 []\T1/txtt/m/n/10 python []m emod_api.spatialreports.plot_spat_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [73] [74 <./spat_plot.png>] Chapter 8. Underfull \hbox (badness 10000) in paragraph at lines 7294--7296 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_prop_report.py [[]h] [[]c channelName] [[]p PRIMARY] [75] [76 <./prop_plot.png>] Chapter 9. LaTeX Warning: Hyper reference `emod_api.multidim_plotter:module-emod_api.multi dim_plotter' on page 77 undefined on input line 7357. 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LaTeX Warning: Reference `emod_api.weather.weather:module-emod_api.weather.weat her' on page 79 undefined on input line 7501. [79] No file institute-for-disease-modeling-emod-api.ind. (./institute-for-disease-modeling-emod-api.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-emod-api.o ut' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (83 pages, 192125 9 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emod-api.ind' from line 'No file institute-for-disease-modeling-emod-api.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: List of undefined refs and citations: Reference `emod_api.campaign:module-emod_api.campaign' on page 79 undefined on input line 7437 Reference `emod_api.channelreports.channels:module-emod_api.channelreports.channels' on page 79 undefined on input line 7439 Reference `emod_api.channelreports.icj_to_csv:module-emod_api.channelreports.icj_to_csv' on page 79 undefined on input line 7440 Reference `emod_api.channelreports.plot_icj_means:module-emod_api.channelreports.plot_icj_means' on page 79 undefined on input line 7441 Reference `emod_api.channelreports.plot_prop_report:module-emod_api.channelreports.plot_prop_report' on page 79 undefined on input line 7442 Reference `emod_api.channelreports.utils:module-emod_api.channelreports.utils' on page 79 undefined on input line 7443 Reference `emod_api.channelreports:module-emod_api.channelreports' on page 79 undefined on input line 7438 Reference `emod_api.config.default_from_schema:module-emod_api.config.default_from_schema' on page 79 undefined on input line 7445 Reference `emod_api.config.default_from_schema_no_validation:module-emod_api.config.default_from_schema_no_validation' on page 79 undefined on input line 7446 Reference `emod_api.config.dtk_post_process_adhocevents:module-emod_api.config.dtk_post_process_adhocevents' on page 79 undefined on input line 7447 Reference `emod_api.config.dtk_pre_process_adhocevents:module-emod_api.config.dtk_pre_process_adhocevents' on page 79 undefined on input line 7448 Reference `emod_api.config.dtk_pre_process_w5ml:module-emod_api.config.dtk_pre_process_w5ml' on page 79 undefined on input line 7449 Reference `emod_api.config.from_overrides:module-emod_api.config.from_overrides' on page 79 undefined on input line 7450 Reference `emod_api.config.from_poi_and_binary:module-emod_api.config.from_poi_and_binary' on page 79 undefined on input line 7451 Reference `emod_api.config.from_schema:module-emod_api.config.from_schema' on page 79 undefined on input line 7452 Reference `emod_api.config.schema_to_config:module-emod_api.config.schema_to_config' on page 79 undefined on input line 7453 Reference `emod_api.config:module-emod_api.config' on page 79 undefined on input line 7444 Reference `emod_api.demographics.BaseInputFile:module-emod_api.demographics.BaseInputFile' on page 79 undefined on input line 7455 Reference `emod_api.demographics.Demographics:module-emod_api.demographics.Demographics' on page 79 undefined on input line 7456 Reference `emod_api.demographics.DemographicsGenerator:module-emod_api.demographics.DemographicsGenerator' on page 79 undefined on input line 7458 Reference `emod_api.demographics.DemographicsInputDataParsers:module-emod_api.demographics.DemographicsInputDataParsers' on page 79 undefined on input line 7459 Reference `emod_api.demographics.DemographicsTemplates:module-emod_api.demographics.DemographicsTemplates' on page 79 undefined on input line 7460 Reference `emod_api.demographics.Node:module-emod_api.demographics.Node' on page 79 undefined on input line 7461 Reference `emod_api.demographics.PreDefinedDistributions:module-emod_api.demographics.PreDefinedDistributions' on page 79 undefined on input line 7462 Reference `emod_api.demographics.PropertiesAndAttributes:module-emod_api.demographics.PropertiesAndAttributes' on page 79 undefined on input line 7463 Reference `emod_api.demographics.Updateable:module-emod_api.demographics.Updateable' on page 79 undefined on input line 7467 Reference `emod_api.demographics.demographics_utils:module-emod_api.demographics.demographics_utils' on page 79 undefined on input line 7457 Reference `emod_api.demographics.service.grid_construction:module-emod_api.demographics.service.grid_construction' on page 79 undefined on input line 7465 Reference `emod_api.demographics.service.service:module-emod_api.demographics.service.service' on page 79 undefined on input line 7466 Reference `emod_api.demographics.service:module-emod_api.demographics.service' on page 79 undefined on input line 7464 Reference `emod_api.demographics:module-emod_api.demographics' on page 79 undefined on input line 7454 Reference `emod_api.interventions.ccdl:module-emod_api.interventions.ccdl' on page 79 undefined on input line 7469 Reference `emod_api.interventions.ccdl_viz:module-emod_api.interventions.ccdl_viz' on page 79 undefined on input line 7470 Reference `emod_api.interventions.common:module-emod_api.interventions.common' on page 79 undefined on input line 7471 Reference `emod_api.interventions.import_pressure:module-emod_api.interventions.import_pressure' on page 79 undefined on input line 7472 Reference `emod_api.interventions.migration:module-emod_api.interventions.migration' on page 79 undefined on input line 7473 Reference 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Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emod-api.idx....done (569 entries accepted, 0 rejected). Sorting entries.......done (5390 comparisons). Generating output file institute-for-disease-modeling-emod-api.ind....done (1063 lines written, 0 warnings). Output written in institute-for-disease-modeling-emod-api.ind. Transcript written in institute-for-disease-modeling-emod-api.ilg. 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[]\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 2718--2721 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [27] Overfull \hbox (43.13435pt too wide) in paragraph at lines 2889--2889 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualAttributes[][]\T1/qtm/m/it/10 ] Overfull \hbox (43.93436pt too wide) in paragraph at lines 2889--2889 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperties[][]\T1/qtm/m/it/10 ] Overfull \hbox (23.48436pt too wide) in paragraph at lines 2889--2889 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.NodeAttributes[][]\T1/qtm/m/it/10 ] [28] [29] Overfull \hbox (221.57382pt too wide) in paragraph at lines 3068--3068 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 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(30.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 nity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 nity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 nity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 risk_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 risk_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 risk_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (89.17386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 tion_heterogeneity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 tion_heterogeneity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (29.62386pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution_male=None\T1/qtm/m/n/10 , Overfull \hbox (36.54384pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution_female=None\T1/qtm/m/n/10 , Overfull \hbox (7.93384pt too wide) in paragraph at lines 3101--3101 \T1/qtm/m/it/10 ity_distribution=None\T1/txtt/m/n/10 )| [30] [31] Overfull \hbox (10.98395pt too wide) in paragraph at lines 3200--3200 \T1/qtm/m/it/10 tial_vectors_per_species=None\T1/qtm/m/n/10 , [32] [33] Underfull \hbox (badness 5578) in paragraph at lines 3419--3422 []\T1/qtm/m/n/10 Cre-ate a static de-mo-graph-ics based on the de-mo-graph-ics file spec-i-fied in the con-fig file of the [34] Overfull \hbox (5.21407pt too wide) in paragraph at lines 3589--3589 \T1/qtm/m/it/10 Node_Selection_Type=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 DISTANCE_ ONLY\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 3854--3856 []\T1/txtt/bx/n/10 IP. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Target_Property_Value. The value part of the new key[]value pair Underfull \hbox (badness 10000) in paragraph at lines 3866--3868 []\T1/txtt/bx/n/10 Target_Property_Value. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Dail y_Probability. The daily probability that Underfull \hbox (badness 10000) in paragraph at lines 3870--3872 []\T1/txtt/bx/n/10 Daily_Probability. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Maximum_ Duration. The maximum amount of time Underfull \hbox (badness 10000) in paragraph at lines 3870--3872 \T1/txtt/m/sl/10 individuals have to move to a new group. This timing works in Underfull \hbox (badness 10000) in paragraph at lines 3874--3876 []\T1/txtt/bx/n/10 group. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Revert. The number o f days before an individual moves back to Underfull \hbox (badness 10000) in paragraph at lines 3878--3880 []\T1/txtt/bx/n/10 policy. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Intervention_Name. Optional Intervention_Name. Useful if Underfull \hbox (badness 10000) in paragraph at lines 3886--3888 []\T1/txtt/bx/n/10 expired. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Event_Trigger_Expi red. Optional broadcast trigger to be [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 4193--4195 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is Overfull \hbox (2.75383pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 ip_targeting=None\T1/qtm/m/n/10 , Overfull \hbox (10.51382pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 get_age_max=45625\T1/qtm/m/n/10 , Overfull \hbox (29.36382pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 get_residents_only=False\T1/qtm/m/n/10 , Overfull \hbox (24.73378pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 check_at_trigger=False\T1/txtt/m/n/10 )| [41] Underfull \hbox (badness 10000) in paragraph at lines 4247--4249 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [42] [43] [44] [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 []\T1/qtm/m/n/10 {^^PDu-ra-tion_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DIST RIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 []\T1/qtm/m/n/10 {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTIO N^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 \T1/qtm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 \T1/qtm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- [47] Overfull \hbox (17.85501pt too wide) in paragraph at lines 4805--4810 \T1/qtm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (55.02502pt too wide) in paragraph at lines 4805--4810 \T1/qtm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4811--4817 []\T1/qtm/m/n/10 du-ra- ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4840 ...{CONST(ANT)}] \leavevmode\begin{itemize} [48] [49] [50] [51] Underfull \hbox (badness 10000) in paragraph at lines 5374--5378 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [52] [53] Overfull \hbox (57.54393pt too wide) in paragraph at lines 5674--5674 [][]\T1/qtm/m/it/10 emod_api.migration.migration.Migration[][]| [54] [55] [56] [57] [58] [59] [60] [61] [62] Underfull \hbox (badness 6842) in paragraph at lines 6850--6853 []\T1/qtm/m/n/10 Set the (path to) the schema file. And re-set all cam-paign va ri-ables. This is es-sen-tially a [63] [64] [65] [66] Chapter 4. [67] [68] Chapter 5. [69] [70] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 7206--7208 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_icj_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [[]t [71] [72 <./sweep_plot.png>] Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 7257--7259 []\T1/txtt/m/n/10 python []m emod_api.spatialreports.plot_spat_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [73] [74 <./spat_plot.png>] Chapter 8. Underfull \hbox (badness 10000) in paragraph at lines 7294--7296 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_prop_report.py [[]h] [[]c channelName] [[]p PRIMARY] [75] [76 <./prop_plot.png>] Chapter 9. [77] [78 <./colormap_plot.png>] Overfull \hbox (29.87175pt too wide) in paragraph at lines 7446--7447 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/ 10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 7447--7448 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7448--7449 []\T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7458--7459 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 7459--7460 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 7460--7461 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7462--7463 []\T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7463--7464 []\T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Overfull \hbox (19.37178pt too wide) in paragraph at lines 7465--7466 []\T1/txtt/m/n/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7495--7496 []\T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , [79] (./institute-for-disease-modeling-emod-api.ind [80] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/txtt/m/n/10 accumulate_channel_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (85.18242pt too wide) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.P ropertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/txtt/m/n/10 add_migration_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (137.68227pt too wide) in paragraph at lines 15--17 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (49.44226pt too wide) in paragraph at lines 17--19 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/txtt/m/n/10 AddAgeDependentTransmission() Overfull \hbox (33.46252pt too wide) in paragraph at lines 19--21 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/txtt/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (33.46252pt too wide) in paragraph at lines 21--23 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/txtt/m/n/10 AgeStructureUNWPP() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 23--25 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/txtt/m/n/10 AgesYears \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Overfull \hbox (31.54231pt too wide) in paragraph at lines 28--30 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Contents Overfull \hbox (26.68231pt too wide) in paragraph at lines 30--32 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.10747pt too wide) in paragraph at lines 32--34 \T1/qtm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 34--36 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (73.8823pt too wide) in paragraph at lines 40--42 []\T1/txtt/m/n/10 apply_overlay() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 apply_to_defaults_or_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 42--44 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 arcsec_to_deg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 44--46 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Overfull \hbox (51.92223pt too wide) in paragraph at lines 46--48 []\T1/txtt/m/n/10 as_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (30.00221pt too wide) in paragraph at lines 48--50 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Channel Overfull \hbox (26.10222pt too wide) in paragraph at lines 50--52 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/txtt/m/n/10 author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 63--65 []\T1/txtt/m/n/10 BaseInputFile \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 63--65 \T1/qtm/m/it/10 emod_api.demographics.BaseInputFile\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 65--66 []\T1/txtt/m/n/10 basicNode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 67--69 []\T1/txtt/m/n/10 BroadcastEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 69--71 []\T1/txtt/m/n/10 BroadcastEventToOtherNodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 72--74 []\T1/txtt/m/n/10 byte_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 call_plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [81] Underfull \hbox (badness 10000) in paragraph at lines 79--81 []\T1/txtt/m/n/10 change_individual_property() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 83--85 []\T1/txtt/m/n/10 change_individual_property_scheduled() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 85--87 []\T1/txtt/m/n/10 change_individual_property_triggered() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/txtt/m/n/10 change_ser_pop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 87--89 \T1/qtm/m/it/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 ), Overfull \hbox (46.67224pt too wide) in paragraph at lines 90--92 []\T1/txtt/m/n/10 channel_names \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channe lreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 ChannelReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (20.42232pt too wide) in paragraph at lines 94--96 []\T1/txtt/m/n/10 channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrepo rts.channels.ChannelReport Overfull \hbox (9.38226pt too wide) in paragraph at lines 96--98 []\T1/txtt/m/n/10 chunk_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 98--100 []\T1/txtt/m/n/10 chunk_sizes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 chunks \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/txtt/m/n/10 collect() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 102--104 \T1/qtm/m/it/10 emod_api.channelreports.plot_icj_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 collect() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 104--106 \T1/qtm/m/it/10 emod_api.spatialreports.plot_spat_means\T1/qtm/m/n/10 ), Overfull \hbox (29.63231pt too wide) in paragraph at lines 106--108 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.EllZeeFour Overfull \hbox (13.76231pt too wide) in paragraph at lines 108--110 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Snappy Overfull \hbox (43.15228pt too wide) in paragraph at lines 110--112 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 114--116 []\T1/txtt/m/n/10 compressed \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 116--118 []\T1/txtt/m/n/10 compression \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 ConstantDistribution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.58746pt too wide) in paragraph at lines 118--120 \T1/qtm/m/it/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 construct() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 120--122 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 ConstructNodesFromDataFrame() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 122--124 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (92.52237pt too wide) in paragraph at lines 124--126 []\T1/txtt/m/n/10 copy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. PreDefinedDistributions.ConstantDistribution Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Weather Overfull \hbox (58.51736pt too wide) in paragraph at lines 130--132 []\T1/txtt/m/n/10 CrudeRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.d emographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports. spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 141--142 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.weather .WeatherNode prop- Overfull \hbox (1.23224pt too wide) in paragraph at lines 142--144 []\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weat her.weather.Metadata Overfull \hbox (13.67229pt too wide) in paragraph at lines 148--150 []\T1/txtt/m/n/10 DatavalueCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 155--156 []\T1/txtt/m/n/10 decorate_actual_iv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/txtt/m/n/10 decorate_actual_iv_impl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (14.49223pt too wide) in paragraph at lines 158--160 []\T1/txtt/m/n/10 default_population \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Node.Node Overfull \hbox (15.1475pt too wide) in paragraph at lines 160--162 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/txtt/m/n/10 DelayedIntervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 164--166 []\T1/txtt/m/n/10 Demographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 164--166 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 166--168 []\T1/txtt/m/n/10 DemographicsGenerator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Overfull \hbox (16.85251pt too wide) in paragraph at lines 166--168 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/txtt/m/n/10 DemographicsOverlay \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 168--170 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/txtt/m/n/10 DemographicsType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (16.85251pt too wide) in paragraph at lines 170--172 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/txtt/m/n/10 disable_warnings() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [82] Underfull \hbox (badness 10000) in paragraph at lines 174--176 []\T1/txtt/m/n/10 display() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 174--176 \T1/qtm/m/it/10 emod_api.channelreports.plot_icj_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 176--178 []\T1/txtt/m/n/10 do_mapping_from_events() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 176--178 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 179--181 []\T1/txtt/m/n/10 dtk_to_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.17227pt too wide) in paragraph at lines 181--183 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 183--185 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 186--188 []\T1/txtt/m/n/10 DtkFile.Contents \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 188--190 []\T1/txtt/m/n/10 DtkFile.Objects \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 190--192 []\T1/txtt/m/n/10 DtkFileV1 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 192--194 []\T1/txtt/m/n/10 DtkFileV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 194--196 []\T1/txtt/m/n/10 DtkFileV2.NodesV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 196--198 []\T1/txtt/m/n/10 DtkFileV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 198--200 []\T1/txtt/m/n/10 DtkFileV3.NodesV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 200--202 []\T1/txtt/m/n/10 DtkFileV4 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 202--204 []\T1/txtt/m/n/10 DtkFileV5 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 204--206 []\T1/txtt/m/n/10 DtkHeader \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (48.0174pt too wide) in paragraph at lines 206--208 []\T1/txtt/m/n/10 DtkRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.dem ographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 208--210 []\T1/txtt/m/n/10 duplicate_nodeID_check() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 208--210 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (19.2323pt too wide) in paragraph at lines 213--215 []\T1/txtt/m/n/10 EllZeeFour \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. serialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (27.37175pt too wide) in paragraph at lines 235--236 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (1.12183pt too wide) in paragraph at lines 237--238 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents 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(badness 10000) in paragraph at lines 356--358 []\T1/txtt/m/n/10 FAMILY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 358--360 []\T1/txtt/m/n/10 FEMALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 360--362 []\T1/txtt/m/n/10 fill_nodes_legacy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (46.2575pt too wide) in paragraph at lines 360--362 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (31.2124pt too wide) in paragraph at lines 364--366 []\T1/txtt/m/n/10 find() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.se rialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 flattenConfig() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (76.32239pt too wide) in paragraph at lines 368--370 []\T1/txtt/m/n/10 flush() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 372--374 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 372--374 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 377--379 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 377--379 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 379--381 []\T1/txtt/m/n/10 from_demog_and_param_gravity() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule [84] Overfull \hbox (113.91234pt too wide) in paragraph at lines 383--385 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (180.06232pt too wide) in paragraph at lines 385--387 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (197.29231pt too wide) in paragraph at lines 387--389 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution Overfull \hbox (203.09232pt too wide) in paragraph at lines 389--391 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (93.66234pt too wide) in paragraph at lines 391--393 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather. weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 395--397 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 395--397 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 397--399 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 397--399 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 399--400 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 400--402 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 400--402 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 402--403 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 []\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/txtt/m/n/10 from_pop_raster_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 405--407 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 407--409 []\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 407--409 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 409--411 []\T1/txtt/m/n/10 FullRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 409--411 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (13.67229pt too wide) in paragraph at lines 414--416 []\T1/txtt/m/n/10 GenderDataType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/txtt/m/n/10 generate_demographics() Overfull \hbox (115.38252pt too wide) in paragraph at lines 416--418 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (69.64224pt too wide) in paragraph at lines 418--420 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.BaseInputFile.BaseInputFile Overfull \hbox (73.8823pt too wide) in paragraph at lines 420--422 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Overfull \hbox (85.3922pt too wide) in paragraph at lines 422--424 []\T1/txtt/m/n/10 generate_headers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.BaseInputFile.BaseInputFile Underfull \hbox (badness 10000) in paragraph at lines 424--426 []\T1/txtt/m/n/10 generate_metadata() Overfull \hbox (115.38252pt too wide) in paragraph at lines 424--426 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (161.05228pt too wide) in paragraph at lines 426--428 []\T1/txtt/m/n/10 generate_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 430--432 []\T1/txtt/m/n/10 get_bbox() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 430--432 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 432--434 []\T1/txtt/m/n/10 get_class_with_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 434--436 []\T1/txtt/m/n/10 get_colour_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (44.89249pt too wide) in paragraph at lines 436--438 \T1/qtm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 438--440 []\T1/txtt/m/n/10 get_default_config_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 438--440 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 440--442 []\T1/txtt/m/n/10 get_default_for_complex_type() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (93.54231pt too wide) in paragraph at lines 442--444 []\T1/txtt/m/n/10 get_dtk_rate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.DemographicsTemplates.CrudeRate Underfull \hbox (badness 10000) in paragraph at lines 445--447 []\T1/txtt/m/n/10 get_fert_dist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 445--447 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/txtt/m/n/10 get_fert_dist_from_rates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 447--449 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 449--451 []\T1/txtt/m/n/10 get_grid_cell_id() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 449--451 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 452--454 []\T1/txtt/m/n/10 get_next_individual_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 452--454 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 454--456 []\T1/txtt/m/n/10 get_next_infection_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 454--456 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 456--458 []\T1/txtt/m/n/10 get_nickname_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.63237pt too wide) in paragraph at lines 458--460 []\T1/txtt/m/n/10 get_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 460--462 []\T1/txtt/m/n/10 get_node_ids_from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 460--462 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Overfull \hbox (34.67223pt too wide) in paragraph at lines 462--464 []\T1/txtt/m/n/10 get_node_offsets() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 464--466 []\T1/txtt/m/n/10 get_node_pops_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 464--466 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 get_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 466--468 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), [85] Underfull \hbox 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emod_api.channelreport s.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 492--494 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 5985) in paragraph at lines 501--503 []\T1/txtt/m/n/10 id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports.sp atial.SpatialNode prop- Underfull \hbox (badness 10000) in paragraph at lines 504--506 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 506--508 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Overfull \hbox (34.6714pt too wide) in paragraph at lines 508--510 []\T1/txtt/m/n/10 IDREF_GRUMP1DEGREE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 510--512 []\T1/txtt/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 510--512 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 512--514 []\T1/txtt/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 512--514 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (3.1715pt too wide) in paragraph at lines 514--516 []\T1/txtt/m/n/10 IDREF_LEGACY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 518--520 []\T1/txtt/m/n/10 IndividualAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 518--520 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Overfull \hbox (14.13748pt too wide) in paragraph at lines 520--522 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 522--524 []\T1/txtt/m/n/10 IndividualAttributes.FertilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 522--524 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 524--526 []\T1/txtt/m/n/10 IndividualAttributes.MortalityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 524--526 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Overfull \hbox (16.87178pt too wide) in paragraph at lines 526--528 []\T1/txtt/m/n/10 IndividualAttributes.SusceptibilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 526--528 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 528--530 []\T1/txtt/m/n/10 IndividualProperties \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 528--530 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 530--532 []\T1/txtt/m/n/10 IndividualProperty \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 530--532 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 532--534 []\T1/txtt/m/n/10 infer_natural_mortality() Overfull \hbox (33.46252pt too wide) in paragraph at lines 532--534 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 534--536 []\T1/txtt/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 534--536 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 536--538 []\T1/txtt/m/n/10 InitAgeUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 536--538 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 538--540 []\T1/txtt/m/n/10 InitPrevUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 538--540 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 540--542 []\T1/txtt/m/n/10 InitRiskExponential() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 540--542 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 542--544 []\T1/txtt/m/n/10 InitRiskLogNormal() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 542--544 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 544--546 []\T1/txtt/m/n/10 InitRiskUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 544--546 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 546--548 []\T1/txtt/m/n/10 InitSusceptConstant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 546--548 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 548--550 []\T1/txtt/m/n/10 inset_chart_json_to_csv_dataframe_pd() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (29.42224pt too wide) in paragraph at lines 550--552 []\T1/txtt/m/n/10 InterpolationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.mi gration.migration.Migration Overfull \hbox (2.72234pt too wide) in paragraph at lines 552--554 []\T1/txtt/m/n/10 interval \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Overfull \hbox (3.1715pt too wide) in paragraph at lines 554--556 []\T1/txtt/m/n/10 INTERVENTION \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration [86] Underfull \hbox (badness 10000) in paragraph at lines 561--563 []\T1/txtt/m/n/10 lat_lon_from_nodeid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 564--566 []\T1/txtt/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 564--566 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 566--568 []\T1/txtt/m/n/10 list_channels_and_ips() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 568--570 []\T1/txtt/m/n/10 load_default_config_as_rod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 568--570 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 570--572 []\T1/txtt/m/n/10 LOCAL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migr ation.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 573--575 []\T1/txtt/m/n/10 lon_lat_2_point() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 573--575 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Overfull \hbox (26.81233pt too wide) in paragraph at lines 578--580 []\T1/txtt/m/n/10 main() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.ch annelreports.plot_prop_report\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 581--583 []\T1/txtt/m/n/10 make_config_from_poi() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 581--583 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 583--585 []\T1/txtt/m/n/10 make_config_from_poi_and_config_dict() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 583--585 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 585--587 []\T1/txtt/m/n/10 make_config_from_poi_and_config_file() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 585--587 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 587--589 []\T1/txtt/m/n/10 make_config_from_poi_and_schema() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 589--590 []\T1/txtt/m/n/10 MALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 593--594 []\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Overfull \hbox (8.4223pt too wide) in paragraph at lines 595--597 []\T1/txtt/m/n/10 MigrationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrat ion.migration.Migration Overfull \hbox (2.62189pt too wide) in paragraph at lines 604--605 []| \T1/txtt/m/n/10 emod_api.channelreports.plot_prop_report\T1/qtm/m/n/10 , Overfull \hbox (49.87175pt too wide) in paragraph at lines 608--609 []| \T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 609--610 []| \T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 610--611 []| \T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (2.62189pt too wide) in paragraph at lines 619--620 []| \T1/txtt/m/n/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 620--621 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (55.12173pt too wide) in paragraph at lines 621--622 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m /n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 622--623 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Overfull \hbox (28.87181pt too wide) in paragraph at lines 624--625 []| \T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (28.87181pt too wide) in paragraph at lines 625--626 []| \T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Overfull \hbox (39.37178pt too wide) in paragraph at lines 627--628 []| \T1/txtt/m/n/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 634--635 []| \T1/txtt/m/n/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 636--637 []| \T1/txtt/m/n/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 , [87] Underfull \hbox (badness 10000) in paragraph at lines 649--650 []| \T1/txtt/m/n/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 653--654 []| \T1/txtt/m/n/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 657--658 []| \T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 659--660 []| \T1/txtt/m/n/10 emod_api.spatialreports.plot_spat_means\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 664--666 []\T1/txtt/m/n/10 MortalityRateByAge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Overfull \hbox (15.1475pt too wide) in paragraph at lines 664--666 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 666--668 []\T1/txtt/m/n/10 MortalityStructureNigeriaDHS() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 666--668 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 668--670 []\T1/txtt/m/n/10 MultiInterventionDistributor() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 673--675 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 673--675 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 675--677 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 675--677 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 677--679 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 679--681 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 679--681 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 681--683 []\T1/txtt/m/n/10 new_intervention2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 681--683 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 683--685 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 683--685 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 685--687 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 685--687 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 687--689 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 689--691 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 689--691 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 691--693 []\T1/txtt/m/n/10 new_scheduled_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 691--693 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Overfull \hbox (47.63237pt too wide) in paragraph at lines 695--697 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Overfull \hbox (13.2223pt too wide) in paragraph at lines 697--699 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/txtt/m/n/10 node_ID_from_lat_long() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 702--704 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (37.1324pt too wide) in paragraph at lines 704--706 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographic s.Demographics.Demographics Overfull \hbox (2.72234pt too wide) in paragraph at lines 706--708 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Underfull \hbox (badness 6808) in paragraph at lines 708--709 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 709--710 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Underfull \hbox (badness 10000) in paragraph at lines 710--712 []\T1/txtt/m/n/10 NodeAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 710--712 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 713--715 []\T1/txtt/m/n/10 NodeCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 715--717 []\T1/txtt/m/n/10 nodeid_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (21.38245pt too wide) in paragraph at lines 719--721 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.D emographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 722--724 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (65.82242pt too wide) in paragraph at lines 724--726 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 730--732 []\T1/txtt/m/n/10 nodes_for_DTK() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/txtt/m/n/10 NoInitialPrevalence() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 732--734 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), [88] Overfull \hbox (62.70738pt too wide) in paragraph at lines 734--736 []\T1/txtt/m/n/10 NoRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (3.48235pt too wide) in paragraph at lines 736--738 []\T1/txtt/m/n/10 NullPtr \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.ser ialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 738--740 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (10.35226pt too wide) in paragraph at lines 740--742 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 742--744 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 744--746 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 749--751 []\T1/txtt/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 749--751 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (34.6714pt too wide) in paragraph at lines 756--758 []\T1/txtt/m/n/10 PIECEWISE_CONSTANT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Overfull \hbox (21.05736pt too wide) in paragraph at lines 758--760 []\T1/txtt/m/n/10 plot() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.sp atialreports.plot_spat_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/txtt/m/n/10 plot_from_sql() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 762--764 []\T1/txtt/m/n/10 plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 764--765 []\T1/txtt/m/n/10 plotBunch() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 765--767 []\T1/txtt/m/n/10 plotCompareFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 767--769 []\T1/txtt/m/n/10 plotOneFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 769--771 []\T1/txtt/m/n/10 point_2_grid_cell_id_lookup() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 769--771 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 772--774 []\T1/txtt/m/n/10 process_cmd_line() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/txtt/m/n/10 prop_report_json_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 774--776 \T1/qtm/m/it/10 emod_api.channelreports.plot_prop_report\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 776--778 []\T1/txtt/m/n/10 property_report_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 778--780 []\T1/txtt/m/n/10 PropertyValueChanger() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 786--788 []\T1/txtt/m/n/10 read_json_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 789--791 []\T1/txtt/m/n/10 recurser() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 789--791 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (36.17227pt too wide) in paragraph at lines 793--795 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 795--797 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 797--799 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 799--801 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 801--803 []\T1/txtt/m/n/10 res_in_degrees \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 808--810 []\T1/txtt/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 808--810 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 811--813 []\T1/txtt/m/n/10 save_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 813--815 []\T1/txtt/m/n/10 ScheduledCampaignEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 815--817 []\T1/txtt/m/n/10 schema_to_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 815--817 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 817--819 []\T1/txtt/m/n/10 schema_to_config_subnode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 817--819 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 819--821 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 821--823 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 825--827 []\T1/txtt/m/n/10 seed_by_coverage() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (26.63243pt too wide) in paragraph at lines 827--829 []\T1/txtt/m/n/10 send() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. Demographics.Demographics [89] Underfull \hbox (badness 10000) in paragraph at lines 829--831 []\T1/txtt/m/n/10 SerializedPopulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 829--831 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 831--833 []\T1/txtt/m/n/10 SerialObject \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 833--835 []\T1/txtt/m/n/10 set_beautifiers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 835--837 []\T1/txtt/m/n/10 set_demog_distributions() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 835--837 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 837--839 []\T1/txtt/m/n/10 set_growing_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 837--839 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 839--841 []\T1/txtt/m/n/10 set_immune_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 839--841 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (161.05228pt too wide) in paragraph at lines 841--843 []\T1/txtt/m/n/10 set_resolution() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 843--845 []\T1/txtt/m/n/10 set_risk_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 843--845 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (6.99231pt too wide) in paragraph at lines 845--847 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_ to_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 848--850 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 848--850 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 850--852 []\T1/txtt/m/n/10 set_static_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 850--852 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 852--854 []\T1/txtt/m/n/10 SetAgeDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 852--854 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (68.63231pt too wide) in paragraph at lines 854--856 []\T1/txtt/m/n/10 SetBirthRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Demographics.Demographics Overfull \hbox (84.38226pt too wide) in paragraph at lines 856--858 []\T1/txtt/m/n/10 SetConstantRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.de mographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 858--860 []\T1/txtt/m/n/10 SetConstantSusceptibility() Overfull \hbox (33.46252pt too wide) in paragraph at lines 858--860 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 860--862 []\T1/txtt/m/n/10 SetDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 860--862 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 862--864 []\T1/txtt/m/n/10 SetDefaultIndividualAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 862--864 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 864--866 []\T1/txtt/m/n/10 SetDefaultIndividualProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 864--866 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 866--868 []\T1/txtt/m/n/10 SetDefaultNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 866--868 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 868--870 []\T1/txtt/m/n/10 SetDefaultProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 868--870 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 870--872 []\T1/txtt/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 870--872 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (1.12183pt too wide) in paragraph at lines 872--874 []\T1/txtt/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (33.46252pt too wide) in paragraph at lines 872--874 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 874--876 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamics() Overfull \hbox (33.46252pt too wide) in paragraph at lines 874--876 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 876--878 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamicsFromWorldBank() Overfull \hbox (33.46252pt too wide) in paragraph at lines 876--878 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 878--880 []\T1/txtt/m/n/10 SetFertilityOverTimeFromParams() Overfull \hbox (33.46252pt too wide) in paragraph at lines 878--880 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 880--882 []\T1/txtt/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 880--882 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/txtt/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 882--884 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 884--886 []\T1/txtt/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 884--886 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at 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emod_api.demographics.Demographics.Demographics Overfull \hbox (89.63225pt too wide) in paragraph at lines 902--904 []\T1/txtt/m/n/10 SetMortalityRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/txtt/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 904--906 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics [90] Underfull \hbox (badness 10000) in paragraph at lines 906--908 []\T1/txtt/m/n/10 SetOneWayMigration() Overfull \hbox (33.46252pt too wide) in paragraph at lines 906--908 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 908--910 []\T1/txtt/m/n/10 SetOverdispersion() Overfull \hbox (33.46252pt too wide) in paragraph at lines 908--910 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics 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cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 985--987 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 987--989 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 989--990 []\T1/txtt/m/n/10 to_tuple() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 990--991 []\T1/txtt/m/n/10 Tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration prop- Underfull \hbox (badness 10000) in paragraph at lines 993--995 []\T1/txtt/m/n/10 triggered_campaign_delay_event() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (11.6218pt too wide) in paragraph at lines 995--997 []\T1/txtt/m/n/10 triggered_campaign_event_with_optional_delay() Underfull \hbox (badness 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (96 pages, 198421 7 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: References changed. 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Underfull \hbox (badness 10000) in paragraph at lines 309--312 []\T1/qtm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 313--316 []\T1/qtm/m/n/10 python -m [7] [8] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [9] [10] [11] Underfull \hbox (badness 10000) in paragraph at lines 944--947 []\T1/qtm/m/n/10 con-fig = json.load(open(^^Pdefault_config.json^^Q), ob-ject_h ook=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (23.04372pt too wide) in paragraph at lines 953--953 []\T1/qtm/m/it/10 path_to_schema\T1/qtm/m/n/10 , Overfull \hbox (37.0137pt too wide) in paragraph at lines 953--953 \T1/qtm/m/it/10 schema_node=True\T1/qtm/m/n/10 , Overfull \hbox (13.74374pt too wide) in paragraph at lines 953--953 \T1/qtm/m/it/10 as_rod=False\T1/qtm/m/n/10 , Overfull \hbox (40.01373pt too wide) in paragraph at lines 953--953 \T1/qtm/m/it/10 put_filename=None\T1/txtt/m/n/10 )| Overfull \hbox (70.57379pt too wide) in paragraph at lines 968--968 \T1/qtm/m/it/10 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Optional broadcast trigger to be [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 4193--4195 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is Overfull \hbox (2.75383pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 ip_targeting=None\T1/qtm/m/n/10 , Overfull \hbox (10.51382pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 get_age_max=45625\T1/qtm/m/n/10 , Overfull \hbox (29.36382pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 get_residents_only=False\T1/qtm/m/n/10 , Overfull \hbox (24.73378pt too wide) in paragraph at lines 4221--4221 \T1/qtm/m/it/10 check_at_trigger=False\T1/txtt/m/n/10 )| [41] Underfull \hbox (badness 10000) in paragraph at lines 4247--4249 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [42] [43] [44] [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 []\T1/qtm/m/n/10 {^^PDu-ra-tion_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DIST RIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4733--4738 \T1/qtm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 []\T1/qtm/m/n/10 {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTIO N^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 \T1/qtm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 4749--4753 \T1/qtm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- [47] Overfull \hbox (17.85501pt too wide) in paragraph at lines 4805--4810 \T1/qtm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (55.02502pt too wide) in paragraph at lines 4805--4810 \T1/qtm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4811--4817 []\T1/qtm/m/n/10 du-ra- ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4840 ...{CONST(ANT)}] \leavevmode\begin{itemize} [48] [49] [50] [51] Underfull \hbox (badness 10000) in paragraph at lines 5374--5378 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [52] [53] Overfull \hbox (57.54393pt too wide) in paragraph at lines 5674--5674 [][]\T1/qtm/m/it/10 emod_api.migration.migration.Migration[][]| [54] [55] [56] [57] [58] [59] [60] [61] [62] Underfull \hbox (badness 6842) in paragraph at lines 6850--6853 []\T1/qtm/m/n/10 Set the (path to) the schema file. And re-set all cam-paign va ri-ables. This is es-sen-tially a [63] [64] [65] [66] Chapter 4. [67] [68] Chapter 5. [69] [70] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 7206--7208 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_icj_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [[]t [71] [72 <./sweep_plot.png>] Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 7257--7259 []\T1/txtt/m/n/10 python []m emod_api.spatialreports.plot_spat_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [73] [74 <./spat_plot.png>] Chapter 8. Underfull \hbox (badness 10000) in paragraph at lines 7294--7296 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_prop_report.py [[]h] [[]c channelName] [[]p PRIMARY] [75] [76 <./prop_plot.png>] Chapter 9. [77] [78 <./colormap_plot.png>] Overfull \hbox (29.87175pt too wide) in paragraph at lines 7446--7447 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/ 10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 7447--7448 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7448--7449 []\T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7458--7459 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 7459--7460 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 7460--7461 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7462--7463 []\T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7463--7464 []\T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Overfull \hbox (19.37178pt too wide) in paragraph at lines 7465--7466 []\T1/txtt/m/n/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7495--7496 []\T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , [79] (./institute-for-disease-modeling-emod-api.ind [80] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/txtt/m/n/10 accumulate_channel_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (85.18242pt too wide) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.P ropertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/txtt/m/n/10 add_migration_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (137.68227pt too wide) in paragraph at lines 15--17 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (49.44226pt too wide) in paragraph at lines 17--19 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/txtt/m/n/10 AddAgeDependentTransmission() Overfull \hbox (33.46252pt too wide) in paragraph at lines 19--21 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/txtt/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (33.46252pt too wide) in paragraph at lines 21--23 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/txtt/m/n/10 AgeStructureUNWPP() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 23--25 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/txtt/m/n/10 AgesYears \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Overfull \hbox (31.54231pt too wide) in paragraph at lines 28--30 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Contents Overfull \hbox (26.68231pt too wide) in paragraph at lines 30--32 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.10747pt too wide) in paragraph at lines 32--34 \T1/qtm/m/it/10 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mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 72--74 []\T1/txtt/m/n/10 byte_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 call_plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [81] Underfull \hbox (badness 10000) in paragraph at lines 79--81 []\T1/txtt/m/n/10 change_individual_property() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 83--85 []\T1/txtt/m/n/10 change_individual_property_scheduled() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 85--87 []\T1/txtt/m/n/10 change_individual_property_triggered() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/txtt/m/n/10 change_ser_pop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 87--89 \T1/qtm/m/it/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 ), Overfull \hbox (46.67224pt too wide) in paragraph at lines 90--92 []\T1/txtt/m/n/10 channel_names \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channe lreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 ChannelReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (20.42232pt too wide) in paragraph at lines 94--96 []\T1/txtt/m/n/10 channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrepo rts.channels.ChannelReport Overfull \hbox (9.38226pt too wide) in paragraph at lines 96--98 []\T1/txtt/m/n/10 chunk_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 98--100 []\T1/txtt/m/n/10 chunk_sizes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 chunks \T1/qtm/m/n/10 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paragraph at lines 110--112 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 114--116 []\T1/txtt/m/n/10 compressed \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 116--118 []\T1/txtt/m/n/10 compression \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 ConstantDistribution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.58746pt too wide) in paragraph at lines 118--120 \T1/qtm/m/it/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 construct() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 120--122 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 ConstructNodesFromDataFrame() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 122--124 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (92.52237pt too wide) in paragraph at lines 124--126 []\T1/txtt/m/n/10 copy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. PreDefinedDistributions.ConstantDistribution Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Weather Overfull \hbox (58.51736pt too wide) in paragraph at lines 130--132 []\T1/txtt/m/n/10 CrudeRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.d emographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports. spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 141--142 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.weather .WeatherNode prop- Overfull \hbox (1.23224pt too wide) in paragraph at lines 142--144 []\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weat her.weather.Metadata Overfull \hbox (13.67229pt too wide) in paragraph at lines 148--150 []\T1/txtt/m/n/10 DatavalueCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 155--156 []\T1/txtt/m/n/10 decorate_actual_iv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/txtt/m/n/10 decorate_actual_iv_impl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (14.49223pt too wide) in paragraph at lines 158--160 []\T1/txtt/m/n/10 default_population \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Node.Node Overfull \hbox (15.1475pt too wide) in paragraph at lines 160--162 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/txtt/m/n/10 DelayedIntervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 164--166 []\T1/txtt/m/n/10 Demographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 164--166 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 166--168 []\T1/txtt/m/n/10 DemographicsGenerator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Overfull \hbox (16.85251pt too wide) in paragraph at lines 166--168 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/txtt/m/n/10 DemographicsOverlay \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 168--170 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/txtt/m/n/10 DemographicsType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (16.85251pt too wide) in paragraph at lines 170--172 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/txtt/m/n/10 disable_warnings() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [82] Underfull \hbox (badness 10000) in paragraph at lines 174--176 []\T1/txtt/m/n/10 display() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 174--176 \T1/qtm/m/it/10 emod_api.channelreports.plot_icj_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 176--178 []\T1/txtt/m/n/10 do_mapping_from_events() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 176--178 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 179--181 []\T1/txtt/m/n/10 dtk_to_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.17227pt too wide) in paragraph at lines 181--183 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 183--185 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 186--188 []\T1/txtt/m/n/10 DtkFile.Contents \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 188--190 []\T1/txtt/m/n/10 DtkFile.Objects \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 190--192 []\T1/txtt/m/n/10 DtkFileV1 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 192--194 []\T1/txtt/m/n/10 DtkFileV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 194--196 []\T1/txtt/m/n/10 DtkFileV2.NodesV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 196--198 []\T1/txtt/m/n/10 DtkFileV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 198--200 []\T1/txtt/m/n/10 DtkFileV3.NodesV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 200--202 []\T1/txtt/m/n/10 DtkFileV4 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 202--204 []\T1/txtt/m/n/10 DtkFileV5 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 204--206 []\T1/txtt/m/n/10 DtkHeader \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (48.0174pt too wide) in paragraph at lines 206--208 []\T1/txtt/m/n/10 DtkRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.dem ographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 208--210 []\T1/txtt/m/n/10 duplicate_nodeID_check() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 208--210 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (19.2323pt too wide) in paragraph at lines 213--215 []\T1/txtt/m/n/10 EllZeeFour \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. serialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (27.37175pt too wide) in paragraph at lines 235--236 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (1.12183pt too wide) in paragraph at lines 237--238 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents 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(badness 10000) in paragraph at lines 356--358 []\T1/txtt/m/n/10 FAMILY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 358--360 []\T1/txtt/m/n/10 FEMALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 360--362 []\T1/txtt/m/n/10 fill_nodes_legacy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (46.2575pt too wide) in paragraph at lines 360--362 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (31.2124pt too wide) in paragraph at lines 364--366 []\T1/txtt/m/n/10 find() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.se rialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 flattenConfig() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (76.32239pt too wide) in paragraph at lines 368--370 []\T1/txtt/m/n/10 flush() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 372--374 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 372--374 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 377--379 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 377--379 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 379--381 []\T1/txtt/m/n/10 from_demog_and_param_gravity() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule [84] Overfull \hbox (113.91234pt too wide) in paragraph at lines 383--385 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (180.06232pt too wide) in paragraph at lines 385--387 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (197.29231pt too wide) in paragraph at lines 387--389 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution Overfull \hbox (203.09232pt too wide) in paragraph at lines 389--391 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (93.66234pt too wide) in paragraph at lines 391--393 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather. weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 395--397 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 395--397 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 397--399 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 397--399 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 399--400 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 400--402 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 400--402 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 402--403 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 []\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 403--405 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/txtt/m/n/10 from_pop_raster_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 405--407 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 407--409 []\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 407--409 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 409--411 []\T1/txtt/m/n/10 FullRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 409--411 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (13.67229pt too wide) in paragraph at lines 414--416 []\T1/txtt/m/n/10 GenderDataType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/txtt/m/n/10 generate_demographics() Overfull \hbox (115.38252pt too wide) in paragraph at lines 416--418 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (69.64224pt too wide) in paragraph at lines 418--420 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.BaseInputFile.BaseInputFile Overfull \hbox (73.8823pt too wide) in paragraph at lines 420--422 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Overfull \hbox (85.3922pt too wide) in paragraph at lines 422--424 []\T1/txtt/m/n/10 generate_headers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.BaseInputFile.BaseInputFile Underfull \hbox (badness 10000) in paragraph at lines 424--426 []\T1/txtt/m/n/10 generate_metadata() Overfull \hbox (115.38252pt too wide) in paragraph at lines 424--426 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (161.05228pt too wide) in paragraph at lines 426--428 []\T1/txtt/m/n/10 generate_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 430--432 []\T1/txtt/m/n/10 get_bbox() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 430--432 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 432--434 []\T1/txtt/m/n/10 get_class_with_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 434--436 []\T1/txtt/m/n/10 get_colour_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (44.89249pt too wide) in paragraph at lines 436--438 \T1/qtm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 438--440 []\T1/txtt/m/n/10 get_default_config_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 438--440 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 440--442 []\T1/txtt/m/n/10 get_default_for_complex_type() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (93.54231pt too wide) in paragraph at lines 442--444 []\T1/txtt/m/n/10 get_dtk_rate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.DemographicsTemplates.CrudeRate Underfull \hbox (badness 10000) in paragraph at lines 445--447 []\T1/txtt/m/n/10 get_fert_dist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 445--447 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/txtt/m/n/10 get_fert_dist_from_rates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 447--449 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 449--451 []\T1/txtt/m/n/10 get_grid_cell_id() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 449--451 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 452--454 []\T1/txtt/m/n/10 get_next_individual_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 452--454 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 454--456 []\T1/txtt/m/n/10 get_next_infection_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 454--456 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 456--458 []\T1/txtt/m/n/10 get_nickname_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.63237pt too wide) in paragraph at lines 458--460 []\T1/txtt/m/n/10 get_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 460--462 []\T1/txtt/m/n/10 get_node_ids_from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 460--462 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Overfull \hbox (34.67223pt too wide) in paragraph at lines 462--464 []\T1/txtt/m/n/10 get_node_offsets() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 464--466 []\T1/txtt/m/n/10 get_node_pops_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 464--466 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 get_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 466--468 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), [85] Underfull \hbox (badness 10000) in paragraph at lines 469--471 []\T1/txtt/m/n/10 get_report_channels() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 474--476 []\T1/txtt/m/n/10 get_shape_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 477--479 []\T1/txtt/m/n/10 get_waning_from_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 479--481 []\T1/txtt/m/n/10 get_waning_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 481--483 []\T1/txtt/m/n/10 get_waning_from_points() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 483--485 []\T1/txtt/m/n/10 get_xpix_ypix() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (9.92235pt too wide) in paragraph at lines 490--492 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreport s.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 492--494 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 5985) in paragraph at lines 501--503 []\T1/txtt/m/n/10 id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports.sp atial.SpatialNode prop- Underfull \hbox (badness 10000) in paragraph at lines 504--506 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 506--508 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Overfull \hbox (34.6714pt too wide) in paragraph at lines 508--510 []\T1/txtt/m/n/10 IDREF_GRUMP1DEGREE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 510--512 []\T1/txtt/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 510--512 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 512--514 []\T1/txtt/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 512--514 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (3.1715pt too wide) in paragraph at lines 514--516 []\T1/txtt/m/n/10 IDREF_LEGACY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 518--520 []\T1/txtt/m/n/10 IndividualAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 518--520 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Overfull \hbox (14.13748pt too wide) in paragraph at lines 520--522 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 522--524 []\T1/txtt/m/n/10 IndividualAttributes.FertilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 522--524 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 524--526 []\T1/txtt/m/n/10 IndividualAttributes.MortalityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 524--526 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Overfull \hbox (16.87178pt too wide) in paragraph at lines 526--528 []\T1/txtt/m/n/10 IndividualAttributes.SusceptibilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 526--528 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 528--530 []\T1/txtt/m/n/10 IndividualProperties \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 528--530 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 530--532 []\T1/txtt/m/n/10 IndividualProperty \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 530--532 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 532--534 []\T1/txtt/m/n/10 infer_natural_mortality() Overfull \hbox (33.46252pt too wide) in paragraph at lines 532--534 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 534--536 []\T1/txtt/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 534--536 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 536--538 []\T1/txtt/m/n/10 InitAgeUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 536--538 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 538--540 []\T1/txtt/m/n/10 InitPrevUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 538--540 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 540--542 []\T1/txtt/m/n/10 InitRiskExponential() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 540--542 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 542--544 []\T1/txtt/m/n/10 InitRiskLogNormal() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 542--544 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 544--546 []\T1/txtt/m/n/10 InitRiskUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 544--546 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 546--548 []\T1/txtt/m/n/10 InitSusceptConstant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 546--548 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 548--550 []\T1/txtt/m/n/10 inset_chart_json_to_csv_dataframe_pd() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (29.42224pt too wide) in paragraph at lines 550--552 []\T1/txtt/m/n/10 InterpolationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.mi gration.migration.Migration Overfull \hbox (2.72234pt too wide) in paragraph at lines 552--554 []\T1/txtt/m/n/10 interval \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Overfull \hbox (3.1715pt too wide) in paragraph at lines 554--556 []\T1/txtt/m/n/10 INTERVENTION \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration [86] Underfull \hbox (badness 10000) in paragraph at lines 561--563 []\T1/txtt/m/n/10 lat_lon_from_nodeid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 564--566 []\T1/txtt/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 564--566 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 566--568 []\T1/txtt/m/n/10 list_channels_and_ips() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 568--570 []\T1/txtt/m/n/10 load_default_config_as_rod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 568--570 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 570--572 []\T1/txtt/m/n/10 LOCAL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migr ation.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 573--575 []\T1/txtt/m/n/10 lon_lat_2_point() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 573--575 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Overfull \hbox (26.81233pt too wide) in paragraph at lines 578--580 []\T1/txtt/m/n/10 main() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.ch annelreports.plot_prop_report\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 581--583 []\T1/txtt/m/n/10 make_config_from_poi() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 581--583 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 583--585 []\T1/txtt/m/n/10 make_config_from_poi_and_config_dict() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 583--585 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 585--587 []\T1/txtt/m/n/10 make_config_from_poi_and_config_file() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 585--587 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 587--589 []\T1/txtt/m/n/10 make_config_from_poi_and_schema() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 589--590 []\T1/txtt/m/n/10 MALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 593--594 []\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Overfull \hbox (8.4223pt too wide) in paragraph at lines 595--597 []\T1/txtt/m/n/10 MigrationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrat ion.migration.Migration Overfull \hbox (2.62189pt too wide) in paragraph at lines 604--605 []| \T1/txtt/m/n/10 emod_api.channelreports.plot_prop_report\T1/qtm/m/n/10 , Overfull \hbox (49.87175pt too wide) in paragraph at lines 608--609 []| \T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 609--610 []| \T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 610--611 []| \T1/txtt/m/n/10 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paragraph at lines 627--628 []| \T1/txtt/m/n/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 634--635 []| \T1/txtt/m/n/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 636--637 []| \T1/txtt/m/n/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 , [87] Underfull \hbox (badness 10000) in paragraph at lines 649--650 []| \T1/txtt/m/n/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 653--654 []| \T1/txtt/m/n/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 657--658 []| \T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 659--660 []| \T1/txtt/m/n/10 emod_api.spatialreports.plot_spat_means\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 664--666 []\T1/txtt/m/n/10 MortalityRateByAge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Overfull \hbox (15.1475pt too wide) in paragraph at lines 664--666 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 666--668 []\T1/txtt/m/n/10 MortalityStructureNigeriaDHS() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 666--668 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 668--670 []\T1/txtt/m/n/10 MultiInterventionDistributor() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 673--675 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 673--675 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull 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in paragraph at lines 683--685 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 683--685 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 685--687 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 685--687 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 687--689 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 689--691 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 689--691 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 691--693 []\T1/txtt/m/n/10 new_scheduled_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 691--693 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Overfull \hbox (47.63237pt too wide) in paragraph at lines 695--697 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Overfull \hbox (13.2223pt too wide) in paragraph at lines 697--699 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/txtt/m/n/10 node_ID_from_lat_long() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 702--704 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (37.1324pt too wide) in paragraph at lines 704--706 []\T1/txtt/m/n/10 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SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 730--732 []\T1/txtt/m/n/10 nodes_for_DTK() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 732--734 []\T1/txtt/m/n/10 NoInitialPrevalence() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 732--734 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), [88] Overfull \hbox (62.70738pt too wide) in paragraph at lines 734--736 []\T1/txtt/m/n/10 NoRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (3.48235pt too wide) in paragraph at lines 736--738 []\T1/txtt/m/n/10 NullPtr \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.ser ialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 738--740 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (10.35226pt too wide) in paragraph at lines 740--742 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 742--744 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 744--746 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 749--751 []\T1/txtt/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 749--751 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (34.6714pt too wide) in paragraph at lines 756--758 []\T1/txtt/m/n/10 PIECEWISE_CONSTANT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Overfull \hbox (21.05736pt too wide) in paragraph at lines 758--760 []\T1/txtt/m/n/10 plot() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.sp atialreports.plot_spat_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/txtt/m/n/10 plot_from_sql() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 762--764 []\T1/txtt/m/n/10 plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 764--765 []\T1/txtt/m/n/10 plotBunch() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 765--767 []\T1/txtt/m/n/10 plotCompareFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 767--769 []\T1/txtt/m/n/10 plotOneFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 769--771 []\T1/txtt/m/n/10 point_2_grid_cell_id_lookup() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (19.1925pt too wide) in paragraph at lines 769--771 \T1/qtm/m/it/10 emod_api.demographics.service.grid_construction\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 772--774 []\T1/txtt/m/n/10 process_cmd_line() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/txtt/m/n/10 prop_report_json_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 774--776 \T1/qtm/m/it/10 emod_api.channelreports.plot_prop_report\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 776--778 []\T1/txtt/m/n/10 property_report_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 778--780 []\T1/txtt/m/n/10 PropertyValueChanger() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 786--788 []\T1/txtt/m/n/10 read_json_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 789--791 []\T1/txtt/m/n/10 recurser() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 789--791 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (36.17227pt too wide) in paragraph at lines 793--795 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 795--797 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 797--799 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 799--801 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 801--803 []\T1/txtt/m/n/10 res_in_degrees \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 808--810 []\T1/txtt/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 808--810 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 811--813 []\T1/txtt/m/n/10 save_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 813--815 []\T1/txtt/m/n/10 ScheduledCampaignEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 815--817 []\T1/txtt/m/n/10 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[]\T1/txtt/m/n/10 send() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. Demographics.Demographics [89] Underfull \hbox (badness 10000) in paragraph at lines 829--831 []\T1/txtt/m/n/10 SerializedPopulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 829--831 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 831--833 []\T1/txtt/m/n/10 SerialObject \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 833--835 []\T1/txtt/m/n/10 set_beautifiers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 835--837 []\T1/txtt/m/n/10 set_demog_distributions() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 835--837 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 837--839 []\T1/txtt/m/n/10 set_growing_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 837--839 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 839--841 []\T1/txtt/m/n/10 set_immune_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 839--841 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (161.05228pt too wide) in paragraph at lines 841--843 []\T1/txtt/m/n/10 set_resolution() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 843--845 []\T1/txtt/m/n/10 set_risk_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 843--845 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (6.99231pt too wide) in paragraph at lines 845--847 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_ to_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 848--850 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 848--850 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 850--852 []\T1/txtt/m/n/10 set_static_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 850--852 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 852--854 []\T1/txtt/m/n/10 SetAgeDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 852--854 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (68.63231pt too wide) in paragraph at lines 854--856 []\T1/txtt/m/n/10 SetBirthRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Demographics.Demographics Overfull \hbox (84.38226pt too wide) in paragraph at lines 856--858 []\T1/txtt/m/n/10 SetConstantRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.de mographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 858--860 []\T1/txtt/m/n/10 SetConstantSusceptibility() Overfull \hbox (33.46252pt too wide) in paragraph at lines 858--860 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 860--862 []\T1/txtt/m/n/10 SetDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 860--862 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 862--864 []\T1/txtt/m/n/10 SetDefaultIndividualAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 862--864 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 864--866 []\T1/txtt/m/n/10 SetDefaultIndividualProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 864--866 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 866--868 []\T1/txtt/m/n/10 SetDefaultNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 866--868 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 868--870 []\T1/txtt/m/n/10 SetDefaultProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 868--870 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 870--872 []\T1/txtt/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 870--872 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (1.12183pt too wide) in paragraph at lines 872--874 []\T1/txtt/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (33.46252pt too wide) in paragraph at lines 872--874 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 874--876 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamics() Overfull \hbox (33.46252pt too wide) in paragraph at lines 874--876 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 876--878 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamicsFromWorldBank() Overfull \hbox (33.46252pt too wide) in paragraph at lines 876--878 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 878--880 []\T1/txtt/m/n/10 SetFertilityOverTimeFromParams() Overfull \hbox (33.46252pt too wide) in paragraph at lines 878--880 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 880--882 []\T1/txtt/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 880--882 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/txtt/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 882--884 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 884--886 []\T1/txtt/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 884--886 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 886--888 []\T1/txtt/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 886--888 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 888--890 []\T1/txtt/m/n/10 SetInitialAgeExponential() Overfull \hbox (33.46252pt too wide) in paragraph at lines 888--890 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 890--892 []\T1/txtt/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (33.46252pt too wide) in paragraph at lines 890--892 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 892--894 []\T1/txtt/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (33.46252pt too wide) in paragraph at lines 892--894 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics 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emod_api.demographics.Demographics.Demographics Overfull \hbox (89.63225pt too wide) in paragraph at lines 902--904 []\T1/txtt/m/n/10 SetMortalityRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/txtt/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 904--906 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics [90] Underfull \hbox (badness 10000) in paragraph at lines 906--908 []\T1/txtt/m/n/10 SetOneWayMigration() Overfull \hbox (33.46252pt too wide) in paragraph at lines 906--908 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 908--910 []\T1/txtt/m/n/10 SetOverdispersion() Overfull \hbox (33.46252pt too wide) in paragraph at lines 908--910 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics 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cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 985--987 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 987--989 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 989--990 []\T1/txtt/m/n/10 to_tuple() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 990--991 []\T1/txtt/m/n/10 Tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration prop- Underfull \hbox (badness 10000) in paragraph at lines 993--995 []\T1/txtt/m/n/10 triggered_campaign_delay_event() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (11.6218pt too wide) in paragraph at lines 995--997 []\T1/txtt/m/n/10 triggered_campaign_event_with_optional_delay() Underfull \hbox (badness 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lines 1012--1014 []\T1/txtt/m/n/10 units \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreports .channels.Channel Overfull \hbox (12.69237pt too wide) in paragraph at lines 1014--1016 []\T1/txtt/m/n/10 update() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographic s.Updateable.Updateable Overfull \hbox (11.73221pt too wide) in paragraph at lines 1016--1018 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.we ather.weather.Metadata Overfull \hbox (6.7322pt too wide) in paragraph at lines 1018--1020 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.we ather.weather.Weather Overfull \hbox (11.43234pt too wide) in paragraph at lines 1020--1021 []\T1/txtt/m/n/10 Updateable \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. demographics.Updateable\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1021--1023 []\T1/txtt/m/n/10 uses_old_waning() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 1026--1028 []\T1/txtt/m/n/10 validate_res_in_arcsec() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 1026--1028 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1028--1030 []\T1/txtt/m/n/10 version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile Overfull \hbox (76.32239pt too wide) in paragraph at lines 1036--1038 []\T1/txtt/m/n/10 write() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Overfull \hbox (2.12732pt too wide) in paragraph at lines 1038--1039 []\T1/txtt/m/n/10 write() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1039--1041 []\T1/txtt/m/n/10 write_config_from_default_and_params() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (62.11249pt too wide) in paragraph at lines 1039--1041 \T1/qtm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/qt m/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1041--1043 []\T1/txtt/m/n/10 write_default_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 1043--1045 []\T1/txtt/m/n/10 write_default_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 1043--1045 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 1045--1047 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (23.72227pt too wide) in paragraph at lines 1047--1049 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatial reports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 1049--1051 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 1051--1052 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 1055--1057 []\T1/txtt/m/n/10 xpix_ypix_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (63.76735pt too wide) in paragraph at lines 1060--1062 []\T1/txtt/m/n/10 YearlyRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), [92]) (./institute-for-disease-modeling-emod-api.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (96 pages, 198435 1 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Errors, in force_mode: so I tried finishing targets Collected error summary (may duplicate other messages): pdflatex: Command for 'pdflatex' gave return code 256