Read the Docs build information
Build id: 1583041
Project: institute-for-disease-modeling-emodpy-malaria
Version: latest
Commit: 5ae5639e4bbbe637810f5bba99a0fb49e5a548c2
Date: 2023-07-06T21:20:48.539676Z
State: finished
Success: True


[rtd-command-info] start-time: 2023-07-06T21:20:57.481398Z, end-time: 2023-07-06T21:21:01.052165Z, duration: 3, exit-code: 0
git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emodpy-malaria.git .
Cloning into '.'...
Warning: Permanently added 'github.com,192.30.255.112' (ECDSA) to the list of known hosts.

[rtd-command-info] start-time: 2023-07-06T21:21:02.133377Z, end-time: 2023-07-06T21:21:02.280626Z, duration: 0, exit-code: 0
git checkout --force origin/main
Note: switching to 'origin/main'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 5ae5639 Adding malaria_challenge intervention (#610)

[rtd-command-info] start-time: 2023-07-06T21:21:02.734772Z, end-time: 2023-07-06T21:21:02.805022Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-07-06T21:21:03.543299Z, end-time: 2023-07-06T21:21:03.612484Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# .readthedocs.yml
# Read the Docs configuration file
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details

# Required
version: 2

# Build documentation in the docs/ directory with Sphinx
sphinx:
  configuration: docs/conf.py
  fail_on_warning: true

# Build documentation with MkDocs
#mkdocs:
#  configuration: mkdocs.yml

# Optionally build your docs in additional formats such as PDF
formats:
  - htmlzip
  - pdf

# Optionally set the version of Python and requirements required to build your docs
python:
   version: 3.8
   install:
      - requirements: requirements.txt
      - requirements: docs/requirements.txt
      - method: setuptools
        path: .
        
# Optionally rank topics in search results, between -10 (lower) and 10 (higher).
# 0 is normal rank, not no rank

# search:
#   ranking:

[rtd-command-info] start-time: 2023-07-06T21:21:06.231907Z, end-time: 2023-07-06T21:21:11.872603Z, duration: 5, exit-code: 0
python3.8 -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
Using base prefix '/home/docs/.pyenv/versions/3.8.6'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python3.8
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2023-07-06T21:21:12.266140Z, end-time: 2023-07-06T21:21:14.125321Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (23.1.2)
Collecting setuptools<58.3.0
  Downloading setuptools-58.2.0-py3-none-any.whl (946 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 31.5 MB/s eta 0:00:00
Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 68.0.0
    Uninstalling setuptools-68.0.0:
      Successfully uninstalled setuptools-68.0.0
Successfully installed setuptools-58.2.0

[rtd-command-info] start-time: 2023-07-06T21:21:14.579866Z, end-time: 2023-07-06T21:21:22.138568Z, duration: 7, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple
Collecting pillow
  Downloading Pillow-10.0.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.3/3.3 MB 69.4 MB/s eta 0:00:00
Collecting mock==1.0.1
  Downloading mock-1.0.1.zip (861 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 249.7 MB/s eta 0:00:00
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting alabaster!=0.7.5,<0.8,>=0.7
  Downloading alabaster-0.7.13-py3-none-any.whl (13 kB)
Collecting commonmark==0.9.1
  Downloading commonmark-0.9.1-py2.py3-none-any.whl (51 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 51.1/51.1 kB 205.5 MB/s eta 0:00:00
Collecting recommonmark==0.5.0
  Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB)
Collecting sphinx<2
  Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 219.7 MB/s eta 0:00:00
Collecting sphinx-rtd-theme<0.5
  Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.4/6.4 MB 196.1 MB/s eta 0:00:00
Collecting readthedocs-sphinx-ext<2.3
  Downloading readthedocs_sphinx_ext-2.2.2-py2.py3-none-any.whl (11 kB)
Collecting jinja2<3.1.0
  Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.6/133.6 kB 219.1 MB/s eta 0:00:00
Collecting docutils>=0.11 (from recommonmark==0.5.0)
  Downloading docutils-0.20.1-py3-none-any.whl (572 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 572.7/572.7 kB 269.5 MB/s eta 0:00:00
Collecting six>=1.5 (from sphinx<2)
  Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting Pygments>=2.0 (from sphinx<2)
  Downloading Pygments-2.15.1-py3-none-any.whl (1.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 274.3 MB/s eta 0:00:00
Collecting docutils>=0.11 (from recommonmark==0.5.0)
  Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 575.5/575.5 kB 268.4 MB/s eta 0:00:00
Collecting snowballstemmer>=1.1 (from sphinx<2)
  Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 229.5 MB/s eta 0:00:00
Collecting babel!=2.0,>=1.3 (from sphinx<2)
  Downloading Babel-2.12.1-py3-none-any.whl (10.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.1/10.1 MB 195.7 MB/s eta 0:00:00
Collecting imagesize (from sphinx<2)
  Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
Collecting requests>=2.0.0 (from sphinx<2)
  Downloading requests-2.31.0-py3-none-any.whl (62 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.6/62.6 kB 193.1 MB/s eta 0:00:00
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx<2) (58.2.0)
Collecting packaging (from sphinx<2)
  Downloading packaging-23.1-py3-none-any.whl (48 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 48.9/48.9 kB 206.4 MB/s eta 0:00:00
Collecting sphinxcontrib-websupport (from sphinx<2)
  Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB)
Collecting MarkupSafe>=2.0 (from jinja2<3.1.0)
  Downloading MarkupSafe-2.1.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
Collecting pytz>=2015.7 (from babel!=2.0,>=1.3->sphinx<2)
  Downloading pytz-2023.3-py2.py3-none-any.whl (502 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 502.3/502.3 kB 264.5 MB/s eta 0:00:00
Collecting charset-normalizer<4,>=2 (from requests>=2.0.0->sphinx<2)
  Downloading charset_normalizer-3.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (195 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 195.9/195.9 kB 257.5 MB/s eta 0:00:00
Collecting idna<4,>=2.5 (from requests>=2.0.0->sphinx<2)
  Downloading idna-3.4-py3-none-any.whl (61 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 213.1 MB/s eta 0:00:00
Collecting urllib3<3,>=1.21.1 (from requests>=2.0.0->sphinx<2)
  Downloading urllib3-2.0.3-py3-none-any.whl (123 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 123.6/123.6 kB 230.1 MB/s eta 0:00:00
Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx<2)
  Downloading certifi-2023.5.7-py3-none-any.whl (156 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 157.0/157.0 kB 248.6 MB/s eta 0:00:00
Collecting sphinxcontrib-serializinghtml (from sphinxcontrib-websupport->sphinx<2)
  Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.0/94.0 kB 209.3 MB/s eta 0:00:00
Building wheels for collected packages: mock
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=767a3a52074c8ee0a8c012d011a5ec24a21ef8b36bc406896ce5e6919d816c84
  Stored in directory: /tmp/pip-ephem-wheel-cache-ezupgnkz/wheels/41/7c/21/90057f91c6ead7c77a90c52d6e85ca48bf82d8b0d3f8dfbb65
Successfully built mock
Installing collected packages: snowballstemmer, pytz, mock, commonmark, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed MarkupSafe-2.1.3 Pygments-2.15.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.5.7 charset-normalizer-3.1.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.1 pillow-10.0.0 pytz-2023.3 readthedocs-sphinx-ext-2.2.2 recommonmark-0.5.0 requests-2.31.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.0.3

[rtd-command-info] start-time: 2023-07-06T21:21:22.535160Z, end-time: 2023-07-06T21:21:53.782880Z, duration: 31, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements.txt
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple
Collecting emodpy~=1.16 (from -r requirements.txt (line 1))
  Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emodpy/1.21.1/emodpy-1.21.1-py3-none-any.whl (121 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.7/121.7 kB 4.5 MB/s eta 0:00:00
Collecting emod-malaria==0.0.54 (from -r requirements.txt (line 2))
  Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emod-malaria/0.0.54/emod_malaria-0.0.54-py3-none-any.whl (3.7 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.7/3.7 MB 14.9 MB/s eta 0:00:00
Collecting requests==2.29.0 (from -r requirements.txt (line 3))
  Downloading requests-2.29.0-py3-none-any.whl (62 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.5/62.5 kB 6.6 MB/s eta 0:00:00
Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests==2.29.0->-r requirements.txt (line 3)) (3.1.0)
Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests==2.29.0->-r requirements.txt (line 3)) (3.4)
Collecting urllib3<1.27,>=1.21.1 (from requests==2.29.0->-r requirements.txt (line 3))
  Downloading urllib3-1.26.16-py2.py3-none-any.whl (143 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 143.1/143.1 kB 20.1 MB/s eta 0:00:00
Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests==2.29.0->-r requirements.txt (line 3)) (2023.5.7)
Collecting click~=7.1 (from emodpy~=1.16->-r requirements.txt (line 1))
  Downloading click-7.1.2-py2.py3-none-any.whl (82 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 82.8/82.8 kB 221.5 MB/s eta 0:00:00
Collecting idmtools~=1.7 (from emodpy~=1.16->-r requirements.txt (line 1))
  Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools/1.7.7/idmtools-1.7.7-py3-none-any.whl (168 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 168.4/168.4 kB 17.7 MB/s eta 0:00:00
Collecting idmtools-platform-comps~=1.7 (from emodpy~=1.16->-r requirements.txt (line 1))
  Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools-platform-comps/1.7.7/idmtools_platform_comps-1.7.7-py3-none-any.whl (185 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 185.2/185.2 kB 19.1 MB/s eta 0:00:00
Collecting idmtools-models~=1.7 (from emodpy~=1.16->-r requirements.txt (line 1))
  Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools-models/1.7.7/idmtools_models-1.7.7-py3-none-any.whl (24 kB)
Collecting emod-api~=1.24 (from emodpy~=1.16->-r requirements.txt (line 1))
  Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emod-api/1.28.5/emod_api-1.28.5-py3-none-any.whl (160 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 160.7/160.7 kB 17.0 MB/s eta 0:00:00
Collecting matplotlib (from emodpy~=1.16->-r requirements.txt (line 1))
  Downloading matplotlib-3.7.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (9.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.2/9.2 MB 157.6 MB/s eta 0:00:00
Collecting astor (from emodpy~=1.16->-r requirements.txt (line 1))
  Downloading astor-0.8.1-py2.py3-none-any.whl (27 kB)
Collecting astunparse (from emodpy~=1.16->-r requirements.txt (line 1))
  Downloading astunparse-1.6.3-py2.py3-none-any.whl (12 kB)
Collecting bs4 (from emodpy~=1.16->-r requirements.txt (line 1))
  Downloading bs4-0.0.1.tar.gz (1.1 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting keyring (from emodpy~=1.16->-r requirements.txt (line 1))
  Downloading keyring-24.2.0-py3-none-any.whl (37 kB)
Collecting pyCOMPS~=2.6 (from emodpy~=1.16->-r requirements.txt (line 1))
  Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/pyCOMPS/2.10.0/pyCOMPS-2.10.0-py2.py3-none-any.whl (74 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 74.5/74.5 kB 181.3 MB/s eta 0:00:00
Collecting numpy!=1.19.4 (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading numpy-1.24.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.3/17.3 MB 198.9 MB/s eta 0:00:00
Collecting pyyaml (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading PyYAML-6.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (701 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 701.2/701.2 kB 255.8 MB/s eta 0:00:00
Collecting pandas (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading pandas-2.0.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.4/12.4 MB 208.4 MB/s eta 0:00:00
Collecting scipy (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading scipy-1.10.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (34.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 34.5/34.5 MB 195.8 MB/s eta 0:00:00
Collecting shapely (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading shapely-2.0.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.3/2.3 MB 232.0 MB/s eta 0:00:00
Collecting pyproj (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading pyproj-3.5.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.8 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.8/7.8 MB 207.0 MB/s eta 0:00:00
Collecting geographiclib (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading geographiclib-2.0-py3-none-any.whl (40 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.3/40.3 kB 187.6 MB/s eta 0:00:00
Collecting scikit-learn (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading scikit_learn-1.3.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.1/11.1 MB 120.7 MB/s eta 0:00:00
Collecting lz4 (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading lz4-4.3.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 259.1 MB/s eta 0:00:00
Collecting prodict (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading prodict-0.8.18.tar.gz (4.2 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting graphviz (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading graphviz-0.20.1-py3-none-any.whl (47 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.0/47.0 kB 152.1 MB/s eta 0:00:00
Collecting parse (from emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading parse-1.19.1-py2.py3-none-any.whl (18 kB)
Collecting backoff<2.3,>=1.10.0 (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading backoff-2.2.1-py3-none-any.whl (15 kB)
Collecting coloredlogs~=15.0 (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading coloredlogs-15.0.1-py2.py3-none-any.whl (46 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 46.0/46.0 kB 188.7 MB/s eta 0:00:00
Collecting diskcache~=5.4.0 (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading diskcache-5.4.0-py3-none-any.whl (44 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.0/45.0 kB 14.5 MB/s eta 0:00:00
Collecting filelock (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading filelock-3.12.2-py3-none-any.whl (10 kB)
Collecting more-itertools~=9.0.0 (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading more_itertools-9.0.0-py3-none-any.whl (52 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 52.8/52.8 kB 197.0 MB/s eta 0:00:00
Collecting pipreqs<0.5,>=0.4.10 (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading pipreqs-0.4.13-py2.py3-none-any.whl (33 kB)
Collecting pluggy~=1.0.0 (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading pluggy-1.0.0-py2.py3-none-any.whl (13 kB)
Collecting tabulate<0.10,>=0.8.9 (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading tabulate-0.9.0-py3-none-any.whl (35 kB)
Collecting tqdm<5,>=4.52.0 (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading tqdm-4.65.0-py3-none-any.whl (77 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.1/77.1 kB 215.5 MB/s eta 0:00:00
Collecting jinja2~=3.1.2 (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading Jinja2-3.1.2-py3-none-any.whl (133 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.1/133.1 kB 230.0 MB/s eta 0:00:00
Collecting packaging<22.0,>=20.4 (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading packaging-21.3-py3-none-any.whl (40 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.8/40.8 kB 199.8 MB/s eta 0:00:00
Collecting pygit2<=1.10.1,>=1.4.0 (from idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading pygit2-1.10.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.6 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 174.7 MB/s eta 0:00:00
Collecting natsort~=8.2.0 (from idmtools-platform-comps~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading natsort-8.2.0-py3-none-any.whl (37 kB)
Requirement already satisfied: pytz>=2016.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from pyCOMPS~=2.6->emodpy~=1.16->-r requirements.txt (line 1)) (2023.3)
Collecting future>=0.16.0 (from pyCOMPS~=2.6->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading future-0.18.3.tar.gz (840 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 840.9/840.9 kB 256.6 MB/s eta 0:00:00
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting xdg>=4.0.1 (from pyCOMPS~=2.6->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading xdg-6.0.0-py3-none-any.whl (3.9 kB)
Requirement already satisfied: wheel<1.0,>=0.23.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from astunparse->emodpy~=1.16->-r requirements.txt (line 1)) (0.40.0)
Requirement already satisfied: six<2.0,>=1.6.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from astunparse->emodpy~=1.16->-r requirements.txt (line 1)) (1.16.0)
Collecting beautifulsoup4 (from bs4->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading beautifulsoup4-4.12.2-py3-none-any.whl (142 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 143.0/143.0 kB 206.8 MB/s eta 0:00:00
Collecting jaraco.classes (from keyring->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading jaraco.classes-3.2.3-py3-none-any.whl (6.0 kB)
Collecting importlib-metadata>=4.11.4 (from keyring->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading importlib_metadata-6.7.0-py3-none-any.whl (22 kB)
Collecting importlib-resources (from keyring->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading importlib_resources-5.12.0-py3-none-any.whl (36 kB)
Collecting SecretStorage>=3.2 (from keyring->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading SecretStorage-3.3.3-py3-none-any.whl (15 kB)
Collecting jeepney>=0.4.2 (from keyring->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading jeepney-0.8.0-py3-none-any.whl (48 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 48.4/48.4 kB 192.6 MB/s eta 0:00:00
Collecting contourpy>=1.0.1 (from matplotlib->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading contourpy-1.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (300 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 300.4/300.4 kB 254.1 MB/s eta 0:00:00
Collecting cycler>=0.10 (from matplotlib->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading cycler-0.11.0-py3-none-any.whl (6.4 kB)
Collecting fonttools>=4.22.0 (from matplotlib->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading fonttools-4.40.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.4/4.4 MB 204.0 MB/s eta 0:00:00
Collecting kiwisolver>=1.0.1 (from matplotlib->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading kiwisolver-1.4.4-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 254.0 MB/s eta 0:00:00
Requirement already satisfied: pillow>=6.2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from matplotlib->emodpy~=1.16->-r requirements.txt (line 1)) (10.0.0)
Collecting pyparsing<3.1,>=2.3.1 (from matplotlib->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading pyparsing-3.0.9-py3-none-any.whl (98 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 98.3/98.3 kB 215.1 MB/s eta 0:00:00
Collecting python-dateutil>=2.7 (from matplotlib->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 247.7/247.7 kB 242.4 MB/s eta 0:00:00
Collecting humanfriendly>=9.1 (from coloredlogs~=15.0->idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading humanfriendly-10.0-py2.py3-none-any.whl (86 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 86.8/86.8 kB 226.3 MB/s eta 0:00:00
Collecting zipp>=0.5 (from importlib-metadata>=4.11.4->keyring->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading zipp-3.15.0-py3-none-any.whl (6.8 kB)
Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from jinja2~=3.1.2->idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1)) (2.1.3)
Collecting tzdata>=2022.1 (from pandas->emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading tzdata-2023.3-py2.py3-none-any.whl (341 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 341.8/341.8 kB 255.1 MB/s eta 0:00:00
Collecting docopt (from pipreqs<0.5,>=0.4.10->idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading docopt-0.6.2.tar.gz (25 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting yarg (from pipreqs<0.5,>=0.4.10->idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading yarg-0.1.9-py2.py3-none-any.whl (19 kB)
Collecting cffi>=1.9.1 (from pygit2<=1.10.1,>=1.4.0->idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading cffi-1.15.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (442 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 442.7/442.7 kB 259.8 MB/s eta 0:00:00
Collecting cryptography>=2.0 (from SecretStorage>=3.2->keyring->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading cryptography-41.0.1-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.3/4.3 MB 204.2 MB/s eta 0:00:00
Collecting soupsieve>1.2 (from beautifulsoup4->bs4->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading soupsieve-2.4.1-py3-none-any.whl (36 kB)
Collecting joblib>=1.1.1 (from scikit-learn->emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading joblib-1.3.1-py3-none-any.whl (301 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 302.0/302.0 kB 256.5 MB/s eta 0:00:00
Collecting threadpoolctl>=2.0.0 (from scikit-learn->emod-api~=1.24->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading threadpoolctl-3.1.0-py3-none-any.whl (14 kB)
Collecting pycparser (from cffi>=1.9.1->pygit2<=1.10.1,>=1.4.0->idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1))
  Downloading pycparser-2.21-py2.py3-none-any.whl (118 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 118.7/118.7 kB 239.2 MB/s eta 0:00:00
Building wheels for collected packages: bs4, future, prodict, docopt
  Building wheel for bs4 (setup.py): started
  Building wheel for bs4 (setup.py): finished with status 'done'
  Created wheel for bs4: filename=bs4-0.0.1-py3-none-any.whl size=1272 sha256=e1651d94dca83908c1059a05163d2e8ce4b6d8717f9def96fdbe6636e768c518
  Stored in directory: /tmp/pip-ephem-wheel-cache-hicbdhjp/wheels/75/78/21/68b124549c9bdc94f822c02fb9aa3578a669843f9767776bca
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.3-py3-none-any.whl size=492035 sha256=fd4862ccc53e1043c2cbeb3507cdec72e518697da51bf8796ce85bbdc528dd36
  Stored in directory: /tmp/pip-ephem-wheel-cache-hicbdhjp/wheels/a0/0b/ee/e6994fadb42c1354dcccb139b0bf2795271bddfe6253ccdf11
  Building wheel for prodict (setup.py): started
  Building wheel for prodict (setup.py): finished with status 'done'
  Created wheel for prodict: filename=prodict-0.8.18-py3-none-any.whl size=4224 sha256=098417afcd9dfaf45facd92f1b84f684fd583e5a3ee843d52b50f2ed60ed7e6e
  Stored in directory: /tmp/pip-ephem-wheel-cache-hicbdhjp/wheels/f7/87/da/f7f3dad926a33705d391981f28b2c2d2b4bc7e1e4804e6fdfe
  Building wheel for docopt (setup.py): started
  Building wheel for docopt (setup.py): finished with status 'done'
  Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13723 sha256=8002ca740c14b72124d97de3e7190c42337c53d63ee0c41eb3c7b111e7165f0f
  Stored in directory: /tmp/pip-ephem-wheel-cache-hicbdhjp/wheels/56/ea/58/ead137b087d9e326852a851351d1debf4ada529b6ac0ec4e8c
Successfully built bs4 future prodict docopt
Installing collected packages: prodict, parse, emod-malaria, docopt, zipp, xdg, urllib3, tzdata, tqdm, threadpoolctl, tabulate, soupsieve, pyyaml, python-dateutil, pyproj, pyparsing, pycparser, pluggy, numpy, natsort, more-itertools, lz4, kiwisolver, joblib, jinja2, jeepney, humanfriendly, graphviz, geographiclib, future, fonttools, filelock, diskcache, cycler, click, backoff, astunparse, astor, shapely, scipy, requests, pandas, packaging, jaraco.classes, importlib-resources, importlib-metadata, contourpy, coloredlogs, cffi, beautifulsoup4, yarg, scikit-learn, pygit2, pyCOMPS, matplotlib, cryptography, bs4, SecretStorage, pipreqs, emod-api, keyring, idmtools, idmtools-platform-comps, idmtools-models, emodpy
  Attempting uninstall: urllib3
    Found existing installation: urllib3 2.0.3
    Uninstalling urllib3-2.0.3:
      Successfully uninstalled urllib3-2.0.3
  Attempting uninstall: jinja2
    Found existing installation: Jinja2 3.0.3
    Uninstalling Jinja2-3.0.3:
      Successfully uninstalled Jinja2-3.0.3
  Attempting uninstall: requests
    Found existing installation: requests 2.31.0
    Uninstalling requests-2.31.0:
      Successfully uninstalled requests-2.31.0
  Attempting uninstall: packaging
    Found existing installation: packaging 23.1
    Uninstalling packaging-23.1:
      Successfully uninstalled packaging-23.1
Successfully installed SecretStorage-3.3.3 astor-0.8.1 astunparse-1.6.3 backoff-2.2.1 beautifulsoup4-4.12.2 bs4-0.0.1 cffi-1.15.1 click-7.1.2 coloredlogs-15.0.1 contourpy-1.1.0 cryptography-41.0.1 cycler-0.11.0 diskcache-5.4.0 docopt-0.6.2 emod-api-1.28.5 emod-malaria-0.0.54 emodpy-1.21.1 filelock-3.12.2 fonttools-4.40.0 future-0.18.3 geographiclib-2.0 graphviz-0.20.1 humanfriendly-10.0 idmtools-1.7.7 idmtools-models-1.7.7 idmtools-platform-comps-1.7.7 importlib-metadata-6.7.0 importlib-resources-5.12.0 jaraco.classes-3.2.3 jeepney-0.8.0 jinja2-3.1.2 joblib-1.3.1 keyring-24.2.0 kiwisolver-1.4.4 lz4-4.3.2 matplotlib-3.7.2 more-itertools-9.0.0 natsort-8.2.0 numpy-1.24.4 packaging-21.3 pandas-2.0.3 parse-1.19.1 pipreqs-0.4.13 pluggy-1.0.0 prodict-0.8.18 pyCOMPS-2.10.0 pycparser-2.21 pygit2-1.10.1 pyparsing-3.0.9 pyproj-3.5.0 python-dateutil-2.8.2 pyyaml-6.0 requests-2.29.0 scikit-learn-1.3.0 scipy-1.10.1 shapely-2.0.1 soupsieve-2.4.1 tabulate-0.9.0 threadpoolctl-3.1.0 tqdm-4.65.0 tzdata-2023.3 urllib3-1.26.16 xdg-6.0.0 yarg-0.1.9 zipp-3.15.0

[rtd-command-info] start-time: 2023-07-06T21:21:54.195202Z, end-time: 2023-07-06T21:22:00.079108Z, duration: 5, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple
Collecting plantweb~=1.2.1 (from -r docs/requirements.txt (line 1))
  Downloading plantweb-1.2.1-py3-none-any.whl (20 kB)
Collecting sphinx-copybutton~=0.3.1 (from -r docs/requirements.txt (line 2))
  Downloading sphinx_copybutton-0.3.3-py3-none-any.whl (12 kB)
Collecting sphinx-rtd-theme~=0.5.0 (from -r docs/requirements.txt (line 3))
  Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.1/9.1 MB 111.0 MB/s eta 0:00:00
Collecting sphinxcontrib-napoleon~=0.7 (from -r docs/requirements.txt (line 4))
  Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB)
Collecting sphinxcontrib-programoutput~=0.16 (from -r docs/requirements.txt (line 5))
  Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB)
Collecting sphinx~=4.4.0 (from -r docs/requirements.txt (line 6))
  Downloading Sphinx-4.4.0-py3-none-any.whl (3.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 211.0 MB/s eta 0:00:00
Collecting sphinxext.remoteliteralinclude (from -r docs/requirements.txt (line 7))
  Downloading sphinxext_remoteliteralinclude-0.4.0-py3-none-any.whl (6.4 kB)
Collecting myst-parser (from -r docs/requirements.txt (line 8))
  Downloading myst_parser-2.0.0-py3-none-any.whl (77 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.2/77.2 kB 226.6 MB/s eta 0:00:00
Collecting readthedocs-sphinx-search (from -r docs/requirements.txt (line 9))
  Downloading readthedocs_sphinx_search-0.3.1-py3-none-any.whl (21 kB)
Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.16.0)
Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2.29.0)
Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (0.17.1)
Collecting docutils (from plantweb~=1.2.1->-r docs/requirements.txt (line 1))
  Downloading docutils-0.16-py2.py3-none-any.whl (548 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 548.2/548.2 kB 261.5 MB/s eta 0:00:00
Collecting pockets>=0.3 (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 4))
  Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB)
Collecting sphinxcontrib-applehelp (from sphinx~=4.4.0->-r docs/requirements.txt (line 6))
  Downloading sphinxcontrib_applehelp-1.0.4-py3-none-any.whl (120 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 120.6/120.6 kB 243.4 MB/s eta 0:00:00
Collecting sphinxcontrib-devhelp (from sphinx~=4.4.0->-r docs/requirements.txt (line 6))
  Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 kB 230.3 MB/s eta 0:00:00
Collecting sphinxcontrib-jsmath (from sphinx~=4.4.0->-r docs/requirements.txt (line 6))
  Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB)
Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx~=4.4.0->-r docs/requirements.txt (line 6))
  Downloading sphinxcontrib_htmlhelp-2.0.1-py3-none-any.whl (99 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 99.8/99.8 kB 213.4 MB/s eta 0:00:00
Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (1.1.5)
Collecting sphinxcontrib-qthelp (from sphinx~=4.4.0->-r docs/requirements.txt (line 6))
  Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.6/90.6 kB 223.1 MB/s eta 0:00:00
Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (3.1.2)
Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.15.1)
Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.2.0)
Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.12.1)
Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (0.7.13)
Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (1.4.1)
Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (21.3)
Requirement already satisfied: importlib-metadata>=4.4 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (6.7.0)
Collecting markdown-it-py~=3.0 (from myst-parser->-r docs/requirements.txt (line 8))
  Downloading markdown_it_py-3.0.0-py3-none-any.whl (87 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 87.5/87.5 kB 189.1 MB/s eta 0:00:00
Collecting mdit-py-plugins~=0.4 (from myst-parser->-r docs/requirements.txt (line 8))
  Downloading mdit_py_plugins-0.4.0-py3-none-any.whl (54 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.1/54.1 kB 186.9 MB/s eta 0:00:00
Requirement already satisfied: pyyaml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from myst-parser->-r docs/requirements.txt (line 8)) (6.0)
INFO: pip is looking at multiple versions of myst-parser to determine which version is compatible with other requirements. This could take a while.
Collecting myst-parser (from -r docs/requirements.txt (line 8))
  Downloading myst_parser-1.0.0-py3-none-any.whl (77 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.3/77.3 kB 149.6 MB/s eta 0:00:00
Collecting markdown-it-py<3.0.0,>=1.0.0 (from myst-parser->-r docs/requirements.txt (line 8))
  Downloading markdown_it_py-2.2.0-py3-none-any.whl (84 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.5/84.5 kB 202.6 MB/s eta 0:00:00
Collecting mdit-py-plugins~=0.3.4 (from myst-parser->-r docs/requirements.txt (line 8))
  Downloading mdit_py_plugins-0.3.5-py3-none-any.whl (52 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 52.1/52.1 kB 192.1 MB/s eta 0:00:00
Collecting myst-parser (from -r docs/requirements.txt (line 8))
  Downloading myst_parser-0.19.2-py3-none-any.whl (77 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.3/77.3 kB 218.3 MB/s eta 0:00:00
  Downloading myst_parser-0.19.1-py3-none-any.whl (76 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 76.8/76.8 kB 221.7 MB/s eta 0:00:00
  Downloading myst_parser-0.19.0-py3-none-any.whl (76 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 76.8/76.8 kB 218.7 MB/s eta 0:00:00
  Downloading myst_parser-0.18.1-py3-none-any.whl (58 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.2/58.2 kB 218.3 MB/s eta 0:00:00
Collecting typing-extensions (from myst-parser->-r docs/requirements.txt (line 8))
  Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB)
Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from babel>=1.3->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2023.3)
Requirement already satisfied: zipp>=0.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from importlib-metadata>=4.4->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (3.15.0)
Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from Jinja2>=2.3->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.1.3)
Collecting mdurl~=0.1 (from markdown-it-py<3.0.0,>=1.0.0->myst-parser->-r docs/requirements.txt (line 8))
  Downloading mdurl-0.1.2-py3-none-any.whl (10.0 kB)
Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (3.1.0)
Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (3.4)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.26.16)
Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2023.5.7)
Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from packaging->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (3.0.9)
Installing collected packages: typing-extensions, sphinxext.remoteliteralinclude, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, readthedocs-sphinx-search, pockets, mdurl, docutils, sphinxcontrib-napoleon, sphinx, plantweb, markdown-it-py, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton, mdit-py-plugins, myst-parser
  Attempting uninstall: docutils
    Found existing installation: docutils 0.17.1
    Uninstalling docutils-0.17.1:
      Successfully uninstalled docutils-0.17.1
  Attempting uninstall: sphinx
    Found existing installation: Sphinx 1.8.6
    Uninstalling Sphinx-1.8.6:
      Successfully uninstalled Sphinx-1.8.6
  Attempting uninstall: sphinx-rtd-theme
    Found existing installation: sphinx-rtd-theme 0.4.3
    Uninstalling sphinx-rtd-theme-0.4.3:
      Successfully uninstalled sphinx-rtd-theme-0.4.3
Successfully installed docutils-0.16 markdown-it-py-2.2.0 mdit-py-plugins-0.3.5 mdurl-0.1.2 myst-parser-0.18.1 plantweb-1.2.1 pockets-0.9.1 readthedocs-sphinx-search-0.3.1 sphinx-4.4.0 sphinx-copybutton-0.3.3 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.4 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.4.0 typing-extensions-4.7.1

[rtd-command-info] start-time: 2023-07-06T21:22:00.536891Z, end-time: 2023-07-06T21:22:02.261509Z, duration: 1, exit-code: 0
python ./setup.py install --force
running install
running bdist_egg
running egg_info
creating emodpy_malaria.egg-info
writing emodpy_malaria.egg-info/PKG-INFO
writing dependency_links to emodpy_malaria.egg-info/dependency_links.txt
writing requirements to emodpy_malaria.egg-info/requires.txt
writing top-level names to emodpy_malaria.egg-info/top_level.txt
writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt'
reading manifest file 'emodpy_malaria.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
creating build/lib/emodpy_malaria
copying emodpy_malaria/malaria_vector_species_params.py -> build/lib/emodpy_malaria
copying emodpy_malaria/vector_config.py -> build/lib/emodpy_malaria
copying emodpy_malaria/malaria_config.py -> build/lib/emodpy_malaria
copying emodpy_malaria/__init__.py -> build/lib/emodpy_malaria
creating build/lib/tests
copying tests/run_all_sft_tests.py -> build/lib/tests
copying tests/add_itn.py -> build/lib/tests
copying tests/__init__.py -> build/lib/tests
copying tests/create_auth_token_args.py -> build/lib/tests
creating build/lib/emodpy_malaria/weather
copying emodpy_malaria/weather/weather_utils.py -> build/lib/emodpy_malaria/weather
copying emodpy_malaria/weather/weather_request.py -> build/lib/emodpy_malaria/weather
copying emodpy_malaria/weather/weather_variable.py -> build/lib/emodpy_malaria/weather
copying emodpy_malaria/weather/weather_set.py -> build/lib/emodpy_malaria/weather
copying emodpy_malaria/weather/data_sources.py -> build/lib/emodpy_malaria/weather
copying emodpy_malaria/weather/weather_metadata.py -> build/lib/emodpy_malaria/weather
copying emodpy_malaria/weather/weather_data.py -> build/lib/emodpy_malaria/weather
copying emodpy_malaria/weather/__init__.py -> build/lib/emodpy_malaria/weather
creating build/lib/emodpy_malaria/demographics
copying emodpy_malaria/demographics/MalariaDemographics.py -> build/lib/emodpy_malaria/demographics
copying emodpy_malaria/demographics/__init__.py -> build/lib/emodpy_malaria/demographics
creating build/lib/emodpy_malaria/reporters
copying emodpy_malaria/reporters/builtin.py -> build/lib/emodpy_malaria/reporters
copying emodpy_malaria/reporters/__init__.py -> build/lib/emodpy_malaria/reporters
creating build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/common.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/adherentdrug.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/sugartrap.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/scale_larval_habitats.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/drug.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/usage_dependent_bednet.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/vaccine.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/malaria_challenge.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/larvicide.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/outbreak.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/outdoorrestkill.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/irs.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/community_health_worker.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/__init__.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/inputeir.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/mosquitorelease.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/treatment_seeking.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/spacespraying.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/diag_survey.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/drug_campaign.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/ivermectin.py -> build/lib/emodpy_malaria/interventions
copying emodpy_malaria/interventions/bednet.py -> build/lib/emodpy_malaria/interventions
creating build/lib/tests/unittests
copying tests/unittests/test_treatment_seeking.py -> build/lib/tests/unittests
copying tests/unittests/test_malaria_reporters.py -> build/lib/tests/unittests
copying tests/unittests/test_malaria_config.py -> build/lib/tests/unittests
copying tests/unittests/manifest.py -> build/lib/tests/unittests
copying tests/unittests/test_import.py -> build/lib/tests/unittests
copying tests/unittests/test_malaria_interventions.py -> build/lib/tests/unittests
copying tests/unittests/test_demog.py -> build/lib/tests/unittests
copying tests/unittests/test_malaria_interventions_as_files.py -> build/lib/tests/unittests
copying tests/unittests/__init__.py -> build/lib/tests/unittests
copying tests/unittests/schema_path_file.py -> build/lib/tests/unittests
copying tests/unittests/test_campaign_common.py -> build/lib/tests/unittests
copying tests/unittests/get_unittest_coverage.py -> build/lib/tests/unittests
creating build/lib/tests/unittests/weather
copying tests/unittests/weather/test_weather_metadata.py -> build/lib/tests/unittests/weather
copying tests/unittests/weather/test_e2e_comps.py -> build/lib/tests/unittests/weather
copying tests/unittests/weather/test_e2e.py -> build/lib/tests/unittests/weather
copying tests/unittests/weather/__init__.py -> build/lib/tests/unittests/weather
copying tests/unittests/weather/test_weather_data.py -> build/lib/tests/unittests/weather
copying tests/unittests/weather/test_weather_request.py -> build/lib/tests/unittests/weather
copying tests/unittests/weather/test_weather_set.py -> build/lib/tests/unittests/weather
copying tests/unittests/weather/test_weather_scenarios.py -> build/lib/tests/unittests/weather
copying emodpy_malaria/malaria_drug_params.csv -> build/lib/emodpy_malaria
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/emodpy_malaria
creating build/bdist.linux-x86_64/egg/emodpy_malaria/weather
copying build/lib/emodpy_malaria/weather/weather_utils.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather
copying build/lib/emodpy_malaria/weather/weather_request.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather
copying build/lib/emodpy_malaria/weather/weather_variable.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather
copying build/lib/emodpy_malaria/weather/weather_set.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather
copying build/lib/emodpy_malaria/weather/data_sources.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather
copying build/lib/emodpy_malaria/weather/weather_metadata.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather
copying build/lib/emodpy_malaria/weather/weather_data.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather
copying build/lib/emodpy_malaria/weather/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather
copying build/lib/emodpy_malaria/malaria_vector_species_params.py -> build/bdist.linux-x86_64/egg/emodpy_malaria
creating build/bdist.linux-x86_64/egg/emodpy_malaria/demographics
copying build/lib/emodpy_malaria/demographics/MalariaDemographics.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics
copying build/lib/emodpy_malaria/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics
copying build/lib/emodpy_malaria/vector_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria
copying build/lib/emodpy_malaria/malaria_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria
creating build/bdist.linux-x86_64/egg/emodpy_malaria/reporters
copying build/lib/emodpy_malaria/reporters/builtin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters
copying build/lib/emodpy_malaria/reporters/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters
copying build/lib/emodpy_malaria/malaria_drug_params.csv -> build/bdist.linux-x86_64/egg/emodpy_malaria
copying build/lib/emodpy_malaria/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria
creating build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/common.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/adherentdrug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/sugartrap.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/scale_larval_habitats.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/drug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/usage_dependent_bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/vaccine.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/malaria_challenge.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/larvicide.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/outdoorrestkill.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/irs.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/community_health_worker.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/inputeir.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/mosquitorelease.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/treatment_seeking.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/spacespraying.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/diag_survey.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/drug_campaign.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/ivermectin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
copying build/lib/emodpy_malaria/interventions/bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions
creating build/bdist.linux-x86_64/egg/tests
copying build/lib/tests/run_all_sft_tests.py -> build/bdist.linux-x86_64/egg/tests
copying build/lib/tests/add_itn.py -> build/bdist.linux-x86_64/egg/tests
copying build/lib/tests/__init__.py -> build/bdist.linux-x86_64/egg/tests
creating build/bdist.linux-x86_64/egg/tests/unittests
creating build/bdist.linux-x86_64/egg/tests/unittests/weather
copying build/lib/tests/unittests/weather/test_weather_metadata.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather
copying build/lib/tests/unittests/weather/test_e2e_comps.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather
copying build/lib/tests/unittests/weather/test_e2e.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather
copying build/lib/tests/unittests/weather/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather
copying build/lib/tests/unittests/weather/test_weather_data.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather
copying build/lib/tests/unittests/weather/test_weather_request.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather
copying build/lib/tests/unittests/weather/test_weather_set.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather
copying build/lib/tests/unittests/weather/test_weather_scenarios.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather
copying build/lib/tests/unittests/test_treatment_seeking.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_malaria_reporters.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_malaria_config.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/manifest.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_import.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_malaria_interventions.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_demog.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_malaria_interventions_as_files.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/schema_path_file.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_campaign_common.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/get_unittest_coverage.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/create_auth_token_args.py -> build/bdist.linux-x86_64/egg/tests
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_utils.py to weather_utils.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_request.py to weather_request.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_variable.py to weather_variable.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_set.py to weather_set.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/data_sources.py to data_sources.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_metadata.py to weather_metadata.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_data.py to weather_data.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_vector_species_params.py to malaria_vector_species_params.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/MalariaDemographics.py to MalariaDemographics.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/vector_config.py to vector_config.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_config.py to malaria_config.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/builtin.py to builtin.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/common.py to common.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/adherentdrug.py to adherentdrug.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/sugartrap.py to sugartrap.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/scale_larval_habitats.py to scale_larval_habitats.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug.py to drug.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/usage_dependent_bednet.py to usage_dependent_bednet.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/vaccine.py to vaccine.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/malaria_challenge.py to malaria_challenge.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/larvicide.py to larvicide.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outbreak.py to outbreak.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outdoorrestkill.py to outdoorrestkill.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/irs.py to irs.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/community_health_worker.py to community_health_worker.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/inputeir.py to inputeir.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/mosquitorelease.py to mosquitorelease.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/treatment_seeking.py to treatment_seeking.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/spacespraying.py to spacespraying.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/diag_survey.py to diag_survey.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug_campaign.py to drug_campaign.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/ivermectin.py to ivermectin.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/bednet.py to bednet.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/run_all_sft_tests.py to run_all_sft_tests.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/add_itn.py to add_itn.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_metadata.py to test_weather_metadata.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_e2e_comps.py to test_e2e_comps.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_e2e.py to test_e2e.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_data.py to test_weather_data.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_request.py to test_weather_request.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_set.py to test_weather_set.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_scenarios.py to test_weather_scenarios.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_treatment_seeking.py to test_treatment_seeking.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_reporters.py to test_malaria_reporters.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_config.py to test_malaria_config.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/manifest.py to manifest.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_import.py to test_import.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions.py to test_malaria_interventions.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demog.py to test_demog.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions_as_files.py to test_malaria_interventions_as_files.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/schema_path_file.py to schema_path_file.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_campaign_common.py to test_campaign_common.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_unittest_coverage.py to get_unittest_coverage.cpython-38.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/create_auth_token_args.py to create_auth_token_args.cpython-38.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying emodpy_malaria.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emodpy_malaria.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emodpy_malaria.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emodpy_malaria.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emodpy_malaria.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
emodpy_malaria.__pycache__.malaria_config.cpython-38: module references __file__
tests.__pycache__.run_all_sft_tests.cpython-38: module references __file__
tests.unittests.__pycache__.manifest.cpython-38: module references __file__
tests.unittests.__pycache__.schema_path_file.cpython-38: module references __file__
tests.unittests.__pycache__.test_campaign_common.cpython-38: module references __file__
tests.unittests.__pycache__.test_demog.cpython-38: module references __file__
tests.unittests.__pycache__.test_malaria_config.cpython-38: module references __file__
tests.unittests.__pycache__.test_malaria_interventions.cpython-38: module references __file__
tests.unittests.__pycache__.test_malaria_reporters.cpython-38: module references __file__
tests.unittests.__pycache__.test_treatment_seeking.cpython-38: module references __file__
tests.unittests.weather.__pycache__.__init__.cpython-38: module references __file__
tests.unittests.weather.__pycache__.test_e2e.cpython-38: module references __file__
tests.unittests.weather.__pycache__.test_e2e_comps.cpython-38: module references __file__
tests.unittests.weather.__pycache__.test_weather_data.cpython-38: module references __file__
tests.unittests.weather.__pycache__.test_weather_metadata.cpython-38: module references __file__
tests.unittests.weather.__pycache__.test_weather_request.cpython-38: module references __file__
tests.unittests.weather.__pycache__.test_weather_scenarios.cpython-38: module references __file__
tests.unittests.weather.__pycache__.test_weather_set.cpython-38: module references __file__
creating dist
creating 'dist/emodpy_malaria-3.1.17.dev0-py3.8.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing emodpy_malaria-3.1.17.dev0-py3.8.egg
creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/emodpy_malaria-3.1.17.dev0-py3.8.egg
Extracting emodpy_malaria-3.1.17.dev0-py3.8.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Adding emodpy-malaria 3.1.17.dev0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/emodpy_malaria-3.1.17.dev0-py3.8.egg
Processing dependencies for emodpy-malaria==3.1.17.dev0
Searching for requests==2.29.0
Best match: requests 2.29.0
Adding requests 2.29.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for emod-malaria==0.0.54
Best match: emod-malaria 0.0.54
Adding emod-malaria 0.0.54 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for emodpy==1.21.1
Best match: emodpy 1.21.1
Adding emodpy 1.21.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for charset-normalizer==3.1.0
Best match: charset-normalizer 3.1.0
Adding charset-normalizer 3.1.0 to easy-install.pth file
Installing normalizer script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for urllib3==1.26.16
Best match: urllib3 1.26.16
Adding urllib3 1.26.16 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for idna==3.4
Best match: idna 3.4
Adding idna 3.4 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for certifi==2023.5.7
Best match: certifi 2023.5.7
Adding certifi 2023.5.7 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for astunparse==1.6.3
Best match: astunparse 1.6.3
Adding astunparse 1.6.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for idmtools-platform-comps==1.7.7
Best match: idmtools-platform-comps 1.7.7
Adding idmtools-platform-comps 1.7.7 to easy-install.pth file
Installing comps-cli script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for astor==0.8.1
Best match: astor 0.8.1
Adding astor 0.8.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for matplotlib==3.7.2
Best match: matplotlib 3.7.2
Adding matplotlib 3.7.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for bs4==0.0.1
Best match: bs4 0.0.1
Adding bs4 0.0.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for idmtools-models==1.7.7
Best match: idmtools-models 1.7.7
Adding idmtools-models 1.7.7 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for emod-api==1.28.5
Best match: emod-api 1.28.5
Adding emod-api 1.28.5 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for idmtools==1.7.7
Best match: idmtools 1.7.7
Adding idmtools 1.7.7 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for pyCOMPS==2.10.0
Best match: pyCOMPS 2.10.0
Adding pyCOMPS 2.10.0 to easy-install.pth file
Installing comps-util script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for keyring==24.2.0
Best match: keyring 24.2.0
Adding keyring 24.2.0 to easy-install.pth file
Installing keyring script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for click==7.1.2
Best match: click 7.1.2
Adding click 7.1.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for wheel==0.40.0
Best match: wheel 0.40.0
Adding wheel 0.40.0 to easy-install.pth file
Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for six==1.16.0
Best match: six 1.16.0
Adding six 1.16.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for Jinja2==3.1.2
Best match: Jinja2 3.1.2
Adding Jinja2 3.1.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for natsort==8.2.0
Best match: natsort 8.2.0
Adding natsort 8.2.0 to easy-install.pth file
Installing natsort script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for tqdm==4.65.0
Best match: tqdm 4.65.0
Adding tqdm 4.65.0 to easy-install.pth file
Installing tqdm script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for fonttools==4.40.0
Best match: fonttools 4.40.0
Adding fonttools 4.40.0 to easy-install.pth file
Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin
Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin
Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin
Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for contourpy==1.1.0
Best match: contourpy 1.1.0
Adding contourpy 1.1.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for kiwisolver==1.4.4
Best match: kiwisolver 1.4.4
Adding kiwisolver 1.4.4 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for Pillow==10.0.0
Best match: Pillow 10.0.0
Adding Pillow 10.0.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for cycler==0.11.0
Best match: cycler 0.11.0
Adding cycler 0.11.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for numpy==1.24.4
Best match: numpy 1.24.4
Adding numpy 1.24.4 to easy-install.pth file
Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin
Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin
Installing f2py3.8 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for importlib-resources==5.12.0
Best match: importlib-resources 5.12.0
Adding importlib-resources 5.12.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for pyparsing==3.0.9
Best match: pyparsing 3.0.9
Adding pyparsing 3.0.9 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for python-dateutil==2.8.2
Best match: python-dateutil 2.8.2
Adding python-dateutil 2.8.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for packaging==21.3
Best match: packaging 21.3
Adding packaging 21.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for beautifulsoup4==4.12.2
Best match: beautifulsoup4 4.12.2
Adding beautifulsoup4 4.12.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for graphviz==0.20.1
Best match: graphviz 0.20.1
Adding graphviz 0.20.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for scikit-learn==1.3.0
Best match: scikit-learn 1.3.0
Adding scikit-learn 1.3.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for parse==1.19.1
Best match: parse 1.19.1
Adding parse 1.19.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for lz4==4.3.2
Best match: lz4 4.3.2
Adding lz4 4.3.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for geographiclib==2.0
Best match: geographiclib 2.0
Adding geographiclib 2.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for pyproj==3.5.0
Best match: pyproj 3.5.0
Adding pyproj 3.5.0 to easy-install.pth file
Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for scipy==1.10.1
Best match: scipy 1.10.1
Adding scipy 1.10.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for shapely==2.0.1
Best match: shapely 2.0.1
Adding shapely 2.0.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for pandas==2.0.3
Best match: pandas 2.0.3
Adding pandas 2.0.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for PyYAML==6.0
Best match: PyYAML 6.0
Adding PyYAML 6.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for prodict==0.8.18
Best match: prodict 0.8.18
Adding prodict 0.8.18 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for tabulate==0.9.0
Best match: tabulate 0.9.0
Adding tabulate 0.9.0 to easy-install.pth file
Installing tabulate script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for pluggy==1.0.0
Best match: pluggy 1.0.0
Adding pluggy 1.0.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for pipreqs==0.4.13
Best match: pipreqs 0.4.13
Adding pipreqs 0.4.13 to easy-install.pth file
Installing pipreqs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for more-itertools==9.0.0
Best match: more-itertools 9.0.0
Adding more-itertools 9.0.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for coloredlogs==15.0.1
Best match: coloredlogs 15.0.1
Adding coloredlogs 15.0.1 to easy-install.pth file
Installing coloredlogs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for pygit2==1.10.1
Best match: pygit2 1.10.1
Adding pygit2 1.10.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for backoff==2.2.1
Best match: backoff 2.2.1
Adding backoff 2.2.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for diskcache==5.4.0
Best match: diskcache 5.4.0
Adding diskcache 5.4.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for filelock==3.12.2
Best match: filelock 3.12.2
Adding filelock 3.12.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for future==0.18.3
Best match: future 0.18.3
Adding future 0.18.3 to easy-install.pth file
Installing futurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin
Installing pasteurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for pytz==2023.3
Best match: pytz 2023.3
Adding pytz 2023.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for xdg==6.0.0
Best match: xdg 6.0.0
Adding xdg 6.0.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for jeepney==0.8.0
Best match: jeepney 0.8.0
Adding jeepney 0.8.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for SecretStorage==3.3.3
Best match: SecretStorage 3.3.3
Adding SecretStorage 3.3.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for jaraco.classes==3.2.3
Best match: jaraco.classes 3.2.3
Adding jaraco.classes 3.2.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for importlib-metadata==6.7.0
Best match: importlib-metadata 6.7.0
Adding importlib-metadata 6.7.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for MarkupSafe==2.1.3
Best match: MarkupSafe 2.1.3
Adding MarkupSafe 2.1.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for zipp==3.15.0
Best match: zipp 3.15.0
Adding zipp 3.15.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for soupsieve==2.4.1
Best match: soupsieve 2.4.1
Adding soupsieve 2.4.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for threadpoolctl==3.1.0
Best match: threadpoolctl 3.1.0
Adding threadpoolctl 3.1.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for joblib==1.3.1
Best match: joblib 1.3.1
Adding joblib 1.3.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for tzdata==2023.3
Best match: tzdata 2023.3
Adding tzdata 2023.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for yarg==0.1.9
Best match: yarg 0.1.9
Adding yarg 0.1.9 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for docopt==0.6.2
Best match: docopt 0.6.2
Adding docopt 0.6.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for humanfriendly==10.0
Best match: humanfriendly 10.0
Adding humanfriendly 10.0 to easy-install.pth file
Installing humanfriendly script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for cffi==1.15.1
Best match: cffi 1.15.1
Adding cffi 1.15.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for cryptography==41.0.1
Best match: cryptography 41.0.1
Adding cryptography 41.0.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Searching for pycparser==2.21
Best match: pycparser 2.21
Adding pycparser 2.21 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages
Finished processing dependencies for emodpy-malaria==3.1.17.dev0

[rtd-command-info] start-time: 2023-07-06T21:22:08.819654Z, end-time: 2023-07-06T21:22:08.893585Z, duration: 0, exit-code: 0
cat docs/conf.py
# -*- coding: utf-8 -*-
#
# Sphinx Demo docs build configuration file, created by
# sphinx-quickstart on Fri Aug 26 16:52:16 2016.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# docs root, use os.path.abspath to make it absolute, like shown here.
#
import os
import subprocess
import sys
import sphinx_rtd_theme
import configparser
from datetime import datetime
from urllib.request import urlretrieve

if sys.platform in ["linux", "darwin"]:
    subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__)))
else:
    subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__)))

# Rename "emodpy-malaria" to "API reference"
filename = 'modules.rst' # This must match the Makefile
with open(filename) as f: # Read existing file
    lines = f.readlines()
lines[0] = "API reference\n" # Blast away the existing heading and replace with this
lines[1] = "=============\n" # Ensure the heading is the right length
with open(filename, "w") as f: # Write new file
    f.writelines(lines)


# -- General configuration ------------------------------------------------

tags.add('emodpymalaria')

# If your docs needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.mathjax',
    'sphinx.ext.githubpages',
    'sphinx.ext.autodoc',
    'sphinxcontrib.napoleon',
    'sphinx.ext.todo',
    'plantweb.directive',
    'sphinxcontrib.programoutput',
    'sphinx_copybutton',
    'sphinx.ext.intersphinx',
    'sphinxext.remoteliteralinclude',
    'myst_parser',
    'sphinx_search.extension'
]

plantuml = 'plantweb'

autodoc_default_options = {
    'member-order': 'bysource',
    'members': None,
    'exclude-members': '__all__'
}

autodoc_mock_imports = []

napoleon_google_docstring = True
# napoleon_numpy_docstring = True

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The encoding of source files.
#
# source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'emodpy-malaria'
copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.'
author = u'Institute for Disease Modeling'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
#current_path = os.path.dirname(__file__)
#version_path = os.path.join(current_path, '..', '.bumpversion.cfg')
#config = configparser.ConfigParser()
#config.read(version_path)

#version = config['bumpversion']['current_version']
# The full version, including alpha/beta/rc tags.
# release = u'1.0'

# The language for content autogenerated by Sphinx. Refer to docs
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = 'en'

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#
# today = ''
#
# Else, today_fmt is used as the format for a strftime call.
#
# today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The reST default role (used for this markup: `text`) to use for all
# documents.
#
# default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#
# add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#
# add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#
# show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
# keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False

# RST epilog is added to the end of every topic. Useful for replace
# directives to use across the docset.

rst_epilog = "\n.. include:: /variables.txt"

# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the docs for
# a list of builtin themes.
#
html_theme = 'sphinx_rtd_theme'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# docs.
# #
# html_theme_options = {
# }

# Add any paths that contain custom themes here, relative to this directory.
html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# The name for this set of Sphinx documents.
# "<project> v<release> docs" by default.
#
# html_title = u'Sphinx Demo v1.0'

# A shorter title for the navigation bar.  Default is the same as html_title.
#
# html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#
html_logo = "images/IDM_white.png"

# The name of an image file (relative to this directory) to use as a favicon of
# the docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#
html_favicon = "images/favicon.ico"

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

html_context = {
    'css_files': [
        '_static/theme_overrides.css',
        '_static/copy_button.css'
        ]
}
html_js_files = ['show_block_by_os.js']
# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the docs.
#
# html_extra_path = []

# If not None, a 'Last updated on:' timestamp is inserted at every page
# bottom, using the given strftime format.
# The empty string is equivalent to '%b %d, %Y'.
#
# html_last_updated_fmt = None

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#
# html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#
# html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#
# html_additional_pages = {}

# If false, no module index is generated.
#
# html_domain_indices = True

# If false, no index is generated.
#
# html_use_index = True

# If true, the index is split into individual pages for each letter.
#
# html_split_index = False

# If true, links to the reST sources are added to the pages.
#
html_show_sourcelink = False

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#
html_show_sphinx = False

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#
# html_show_copyright = True

# -- RTD Sphinx search for searching across the entire domain -------------

if os.environ.get('READTHEDOCS') == 'True':

    search_project_parent = "institute-for-disease-modeling-idm"
    search_project = os.environ["READTHEDOCS_PROJECT"]
    search_version = os.environ["READTHEDOCS_VERSION"]

    rtd_sphinx_search_default_filter = f"subprojects:{search_project_parent}/{search_version}"

    rtd_sphinx_search_filters = {
        "Search this project": f"project:{search_project}/{search_version}",
        "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}",
    }

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#
html_use_opensearch = 'www.idmod.org/docs/'

# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh'
#
# html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# 'ja' uses this config value.
# 'zh' user can custom change `jieba` dictionary path.
#
# html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#
# html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'emodpy-malaria'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'emodpy-malaria-docs.tex', u'emodpy-malaria',
     u'Institute for Disease Modeling', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#
# latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#
# latex_use_parts = False

# If true, show page references after internal links.
#
# latex_show_pagerefs = False

# If true, show URL addresses after external links.
#
# latex_show_urls = False

# Documents to append as an appendix to all manuals.
#
# latex_appendices = []

# It false, will not define \strong, \code,     itleref, \crossref ... but only
# \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added
# packages.
#
# latex_keep_old_macro_names = True

# If false, no module index is generated.
#
# latex_domain_indices = True


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria',
     [author], 1)
]

# If true, show URL addresses after external links.
#
man_show_urls = True

# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria',
     author, 'Institute for Disease Modeling', 'How to use emodpy for malaria simulations.',
     'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#
# texinfo_appendices = []

# If false, no module index is generated.
#
# texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#
# texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#
# texinfo_no_detailmenu = False


# Example configuration for intersphinx: refer to the Python standard library.

intersphinx_mapping = {'python': ('https://docs.python.org/3', None),
                       'emod_api': ('https://docs.idmod.org/projects/emod-api/en/latest/', None),
                       'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None),
                       'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None),
                       'emod-malaria': ('https://docs.idmod.org/projects/emod-malaria/en/latest/', None),
                       'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None)
                       }



###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#
# Note: this file shouldn't rely on extra dependencies.

import importlib
import sys
import os.path

# Borrowed from six.
PY3 = sys.version_info[0] == 3
string_types = str if PY3 else basestring

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}


# This following legacy behavior will gradually be sliced out until its deprecated and removed.
# Skipped for Sphinx 6+
# Skipped by internal Feature flag SKIP_SPHINX_HTML_THEME_PATH
# Skipped by all new projects since SKIP_SPHINX_HTML_THEME_PATH's introduction (jan 2023)
if (
        using_rtd_theme
        and version_info < (6,0)
        and not False
    ):
    theme = importlib.import_module('sphinx_rtd_theme')
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

# Define websupport2_base_url and websupport2_static_url
if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://assets.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://assets.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'proxied_static_path': "/_/static/",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("v3.1.12", "/en/v3.1.12/"),
    ("3.1.1", "/en/3.1.1/"),
    ("2.4.3", "/en/2.4.3/"),
    ("2.3.6", "/en/2.3.6/"),
    ("v2.3.1", "/en/v2.3.1/"),
    ("2.2.1", "/en/2.2.1/"),
    ("v2.1.1", "/en/v2.1.1/"),
    ("v2.0.2", "/en/v2.0.2/"),
    ("v2.0.1", "/en/v2.0.1/"),
    ("v1.20.2", "/en/v1.20.2/"),
    ("v1.1.19", "/en/v1.1.19/"),
    ("v1.1.0", "/en/v1.1.0/"),
    ("v1.0.10", "/en/v1.0.10/"),
    ("v1.0.9", "/en/v1.0.9/"),
    ("v1.0.2", "/en/v1.0.2/"),
    ("v3.0.1release", "/en/v3.0.1release/"),
    ("v.2.2.0", "/en/v.2.2.0/"),
    ("2.3.6release", "/en/2.3.6release/"),
    ("v0.0.61", "/en/v0.0.61/"),
    ("v0.0.50", "/en/v0.0.50/"),
    ("0.0.50", "/en/0.0.50/"),
    ("v0.0.48", "/en/v0.0.48/"),
    ("v0.0.45", "/en/v0.0.45/"),
    ("v0.0.44", "/en/v0.0.44/"),
    ("v0.0.29", "/en/v0.0.29/"),
    ("v0.0.18", "/en/v0.0.18/"),
    ],
    'downloads': [ 
    ("pdf", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/pdf/"),
    ("html", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/htmlzip/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'institute-for-disease-modeling-emodpy-malaria',
    'name': u'emodpy-malaria',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': '',
    'analytics_code': 'G-SVDSQH04EM',
    'single_version': False,
    'conf_py_path': '/docs/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'InstituteforDiseaseModeling',
    'proxied_api_host': '/_',
    'github_repo': 'emodpy-malaria',
    'github_version': 'main',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'main',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'main',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': 'G-SVDSQH04EM',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '5ae5639e',
}

# For sphinx >=1.8 we can use html_baseurl to set the canonical URL.
# https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl
if version_info >= (1, 8):
    if not globals().get('html_baseurl'):
        html_baseurl = context['canonical_url']
    context['canonical_url'] = None





if 'html_context' in globals():
    for key in context:
        if key not in html_context:
            html_context[key] = context[key]
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")
    readthedocs_vcs_url = 'None'
    readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emodpy-malaria/builds/1583041/'

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2023-07-06T21:22:09.308538Z, end-time: 2023-07-06T21:22:21.962083Z, duration: 12, exit-code: 0
python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html
Running Sphinx v4.4.0
loading translations [en]... done
making output directory... done
loading intersphinx inventory from https://docs.python.org/3/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv...
myst v0.18.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=[], disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area')
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 43 source files that are out of date
updating environment: [new config] 43 added, 0 changed, 0 removed
reading sources... [  2%] emodpy_malaria
reading sources... [  4%] emodpy_malaria.demographics
reading sources... [  6%] emodpy_malaria.demographics.MalariaDemographics
reading sources... [  9%] emodpy_malaria.interventions
reading sources... [ 11%] emodpy_malaria.interventions.adherentdrug
reading sources... [ 13%] emodpy_malaria.interventions.bednet
reading sources... [ 16%] emodpy_malaria.interventions.common
reading sources... [ 18%] emodpy_malaria.interventions.community_health_worker
reading sources... [ 20%] emodpy_malaria.interventions.diag_survey
reading sources... [ 23%] emodpy_malaria.interventions.drug
reading sources... [ 25%] emodpy_malaria.interventions.drug_campaign
reading sources... [ 27%] emodpy_malaria.interventions.inputeir
reading sources... [ 30%] emodpy_malaria.interventions.irs
reading sources... [ 32%] emodpy_malaria.interventions.ivermectin
reading sources... [ 34%] emodpy_malaria.interventions.larvicide
reading sources... [ 37%] emodpy_malaria.interventions.malaria_challenge
reading sources... [ 39%] emodpy_malaria.interventions.mosquitorelease
reading sources... [ 41%] emodpy_malaria.interventions.outbreak
reading sources... [ 44%] emodpy_malaria.interventions.outdoorrestkill
reading sources... [ 46%] emodpy_malaria.interventions.scale_larval_habitats
reading sources... [ 48%] emodpy_malaria.interventions.spacespraying
reading sources... [ 51%] emodpy_malaria.interventions.sugartrap
reading sources... [ 53%] emodpy_malaria.interventions.treatment_seeking
reading sources... [ 55%] emodpy_malaria.interventions.usage_dependent_bednet
reading sources... [ 58%] emodpy_malaria.interventions.vaccine
reading sources... [ 60%] emodpy_malaria.malaria_config
reading sources... [ 62%] emodpy_malaria.malaria_vector_species_params
reading sources... [ 65%] emodpy_malaria.reporters
reading sources... [ 67%] emodpy_malaria.reporters.builtin
/!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.7.7/configuration.html for details on how to configure idmtools.
reading sources... [ 69%] emodpy_malaria.vector_config
reading sources... [ 72%] emodpy_malaria.weather
reading sources... [ 74%] emodpy_malaria.weather.data_sources
reading sources... [ 76%] emodpy_malaria.weather.weather_data
reading sources... [ 79%] emodpy_malaria.weather.weather_metadata
reading sources... [ 81%] emodpy_malaria.weather.weather_request
reading sources... [ 83%] emodpy_malaria.weather.weather_set
reading sources... [ 86%] emodpy_malaria.weather.weather_utils
reading sources... [ 88%] emodpy_malaria.weather.weather_variable
reading sources... [ 90%] faq
reading sources... [ 93%] index
reading sources... [ 95%] installation
reading sources... [ 97%] installation-basic
reading sources... [100%] modules

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  2%] emodpy_malaria
writing output... [  4%] emodpy_malaria.demographics
writing output... [  6%] emodpy_malaria.demographics.MalariaDemographics
writing output... [  9%] emodpy_malaria.interventions
writing output... [ 11%] emodpy_malaria.interventions.adherentdrug
writing output... [ 13%] emodpy_malaria.interventions.bednet
writing output... [ 16%] emodpy_malaria.interventions.common
writing output... [ 18%] emodpy_malaria.interventions.community_health_worker
writing output... [ 20%] emodpy_malaria.interventions.diag_survey
writing output... [ 23%] emodpy_malaria.interventions.drug
writing output... [ 25%] emodpy_malaria.interventions.drug_campaign
writing output... [ 27%] emodpy_malaria.interventions.inputeir
writing output... [ 30%] emodpy_malaria.interventions.irs
writing output... [ 32%] emodpy_malaria.interventions.ivermectin
writing output... [ 34%] emodpy_malaria.interventions.larvicide
writing output... [ 37%] emodpy_malaria.interventions.malaria_challenge
writing output... [ 39%] emodpy_malaria.interventions.mosquitorelease
writing output... [ 41%] emodpy_malaria.interventions.outbreak
writing output... [ 44%] emodpy_malaria.interventions.outdoorrestkill
writing output... [ 46%] emodpy_malaria.interventions.scale_larval_habitats
writing output... [ 48%] emodpy_malaria.interventions.spacespraying
writing output... [ 51%] emodpy_malaria.interventions.sugartrap
writing output... [ 53%] emodpy_malaria.interventions.treatment_seeking
writing output... [ 55%] emodpy_malaria.interventions.usage_dependent_bednet
writing output... [ 58%] emodpy_malaria.interventions.vaccine
writing output... [ 60%] emodpy_malaria.malaria_config
writing output... [ 62%] emodpy_malaria.malaria_vector_species_params
writing output... [ 65%] emodpy_malaria.reporters
writing output... [ 67%] emodpy_malaria.reporters.builtin
writing output... [ 69%] emodpy_malaria.vector_config
writing output... [ 72%] emodpy_malaria.weather
writing output... [ 74%] emodpy_malaria.weather.data_sources
writing output... [ 76%] emodpy_malaria.weather.weather_data
writing output... [ 79%] emodpy_malaria.weather.weather_metadata
writing output... [ 81%] emodpy_malaria.weather.weather_request
writing output... [ 83%] emodpy_malaria.weather.weather_set
writing output... [ 86%] emodpy_malaria.weather.weather_utils
writing output... [ 88%] emodpy_malaria.weather.weather_variable
writing output... [ 90%] faq
writing output... [ 93%] index
writing output... [ 95%] installation
writing output... [ 97%] installation-basic
writing output... [100%] modules

generating indices... genindex py-modindex done
writing additional pages... search opensearch done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded.

The HTML pages are in ../_readthedocs/html.
Updating searchtools for Read the Docs search...

[rtd-command-info] start-time: 2023-07-06T21:22:22.339310Z, end-time: 2023-07-06T21:22:34.420693Z, duration: 12, exit-code: 0
python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip
Running Sphinx v4.4.0
loading translations [en]... done
making output directory... done
loading intersphinx inventory from https://docs.python.org/3/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv...
myst v0.18.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=[], disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area')
building [mo]: targets for 0 po files that are out of date
building [readthedocssinglehtmllocalmedia]: all documents
updating environment: [new config] 43 added, 0 changed, 0 removed
reading sources... [  2%] emodpy_malaria
reading sources... [  4%] emodpy_malaria.demographics
reading sources... [  6%] emodpy_malaria.demographics.MalariaDemographics
reading sources... [  9%] emodpy_malaria.interventions
reading sources... [ 11%] emodpy_malaria.interventions.adherentdrug
reading sources... [ 13%] emodpy_malaria.interventions.bednet
reading sources... [ 16%] emodpy_malaria.interventions.common
reading sources... [ 18%] emodpy_malaria.interventions.community_health_worker
reading sources... [ 20%] emodpy_malaria.interventions.diag_survey
reading sources... [ 23%] emodpy_malaria.interventions.drug
reading sources... [ 25%] emodpy_malaria.interventions.drug_campaign
reading sources... [ 27%] emodpy_malaria.interventions.inputeir
reading sources... [ 30%] emodpy_malaria.interventions.irs
reading sources... [ 32%] emodpy_malaria.interventions.ivermectin
reading sources... [ 34%] emodpy_malaria.interventions.larvicide
reading sources... [ 37%] emodpy_malaria.interventions.malaria_challenge
reading sources... [ 39%] emodpy_malaria.interventions.mosquitorelease
reading sources... [ 41%] emodpy_malaria.interventions.outbreak
reading sources... [ 44%] emodpy_malaria.interventions.outdoorrestkill
reading sources... [ 46%] emodpy_malaria.interventions.scale_larval_habitats
reading sources... [ 48%] emodpy_malaria.interventions.spacespraying
reading sources... [ 51%] emodpy_malaria.interventions.sugartrap
reading sources... [ 53%] emodpy_malaria.interventions.treatment_seeking
reading sources... [ 55%] emodpy_malaria.interventions.usage_dependent_bednet
reading sources... [ 58%] emodpy_malaria.interventions.vaccine
reading sources... [ 60%] emodpy_malaria.malaria_config
reading sources... [ 62%] emodpy_malaria.malaria_vector_species_params
reading sources... [ 65%] emodpy_malaria.reporters
reading sources... [ 67%] emodpy_malaria.reporters.builtin
/!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.7.7/configuration.html for details on how to configure idmtools.
reading sources... [ 69%] emodpy_malaria.vector_config
reading sources... [ 72%] emodpy_malaria.weather
reading sources... [ 74%] emodpy_malaria.weather.data_sources
reading sources... [ 76%] emodpy_malaria.weather.weather_data
reading sources... [ 79%] emodpy_malaria.weather.weather_metadata
reading sources... [ 81%] emodpy_malaria.weather.weather_request
reading sources... [ 83%] emodpy_malaria.weather.weather_set
reading sources... [ 86%] emodpy_malaria.weather.weather_utils
reading sources... [ 88%] emodpy_malaria.weather.weather_variable
reading sources... [ 90%] faq
reading sources... [ 93%] index
reading sources... [ 95%] installation
reading sources... [ 97%] installation-basic
reading sources... [100%] modules

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
assembling single document... installation installation-basic modules emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.adherentdrug emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.community_health_worker emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.larvicide emodpy_malaria.interventions.malaria_challenge emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.scale_larval_habitats emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.usage_dependent_bednet emodpy_malaria.interventions.vaccine emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.weather emodpy_malaria.weather.data_sources emodpy_malaria.weather.weather_data emodpy_malaria.weather.weather_metadata emodpy_malaria.weather.weather_request emodpy_malaria.weather.weather_set emodpy_malaria.weather.weather_utils emodpy_malaria.weather.weather_variable emodpy_malaria.malaria_config emodpy_malaria.malaria_vector_species_params emodpy_malaria.vector_config faq done
writing... done
writing additional files...  opensearchdone
copying static files... done
copying extra files... done
dumping object inventory... done
build succeeded.

The HTML page is in ../_readthedocs/htmlzip.
Updating searchtools for Read the Docs search...

[rtd-command-info] start-time: 2023-07-06T21:22:35.773330Z, end-time: 2023-07-06T21:22:47.607038Z, duration: 11, exit-code: 0
python -m sphinx -T -E -b latex -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/pdf
Running Sphinx v4.4.0
loading translations [en]... done
making output directory... done
loading intersphinx inventory from https://docs.python.org/3/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv...
myst v0.18.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=[], disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area')
building [mo]: targets for 0 po files that are out of date
building [latex]: all documents
updating environment: [new config] 43 added, 0 changed, 0 removed
reading sources... [  2%] emodpy_malaria
reading sources... [  4%] emodpy_malaria.demographics
reading sources... [  6%] emodpy_malaria.demographics.MalariaDemographics
reading sources... [  9%] emodpy_malaria.interventions
reading sources... [ 11%] emodpy_malaria.interventions.adherentdrug
reading sources... [ 13%] emodpy_malaria.interventions.bednet
reading sources... [ 16%] emodpy_malaria.interventions.common
reading sources... [ 18%] emodpy_malaria.interventions.community_health_worker
reading sources... [ 20%] emodpy_malaria.interventions.diag_survey
reading sources... [ 23%] emodpy_malaria.interventions.drug
reading sources... [ 25%] emodpy_malaria.interventions.drug_campaign
reading sources... [ 27%] emodpy_malaria.interventions.inputeir
reading sources... [ 30%] emodpy_malaria.interventions.irs
reading sources... [ 32%] emodpy_malaria.interventions.ivermectin
reading sources... [ 34%] emodpy_malaria.interventions.larvicide
reading sources... [ 37%] emodpy_malaria.interventions.malaria_challenge
reading sources... [ 39%] emodpy_malaria.interventions.mosquitorelease
reading sources... [ 41%] emodpy_malaria.interventions.outbreak
reading sources... [ 44%] emodpy_malaria.interventions.outdoorrestkill
reading sources... [ 46%] emodpy_malaria.interventions.scale_larval_habitats
reading sources... [ 48%] emodpy_malaria.interventions.spacespraying
reading sources... [ 51%] emodpy_malaria.interventions.sugartrap
reading sources... [ 53%] emodpy_malaria.interventions.treatment_seeking
reading sources... [ 55%] emodpy_malaria.interventions.usage_dependent_bednet
reading sources... [ 58%] emodpy_malaria.interventions.vaccine
reading sources... [ 60%] emodpy_malaria.malaria_config
reading sources... [ 62%] emodpy_malaria.malaria_vector_species_params
reading sources... [ 65%] emodpy_malaria.reporters
reading sources... [ 67%] emodpy_malaria.reporters.builtin
/!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.7.7/configuration.html for details on how to configure idmtools.
reading sources... [ 69%] emodpy_malaria.vector_config
reading sources... [ 72%] emodpy_malaria.weather
reading sources... [ 74%] emodpy_malaria.weather.data_sources
reading sources... [ 76%] emodpy_malaria.weather.weather_data
reading sources... [ 79%] emodpy_malaria.weather.weather_metadata
reading sources... [ 81%] emodpy_malaria.weather.weather_request
reading sources... [ 83%] emodpy_malaria.weather.weather_set
reading sources... [ 86%] emodpy_malaria.weather.weather_utils
reading sources... [ 88%] emodpy_malaria.weather.weather_variable
reading sources... [ 90%] faq
reading sources... [ 93%] index
reading sources... [ 95%] installation
reading sources... [ 97%] installation-basic
reading sources... [100%] modules

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
processing emodpy-malaria-docs.tex... index installation installation-basic modules emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.adherentdrug emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.community_health_worker emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.larvicide emodpy_malaria.interventions.malaria_challenge emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.scale_larval_habitats emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.usage_dependent_bednet emodpy_malaria.interventions.vaccine emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.weather emodpy_malaria.weather.data_sources emodpy_malaria.weather.weather_data emodpy_malaria.weather.weather_metadata emodpy_malaria.weather.weather_request emodpy_malaria.weather.weather_set emodpy_malaria.weather.weather_utils emodpy_malaria.weather.weather_variable emodpy_malaria.malaria_config emodpy_malaria.malaria_vector_species_params emodpy_malaria.vector_config faq 
resolving references...
done
writing... done
copying TeX support files... copying TeX support files...
done
build succeeded.

The LaTeX files are in ../_readthedocs/pdf.
Run 'make' in that directory to run these through (pdf)latex
(use `make latexpdf' here to do that automatically).
WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/checkouts/latest/_readthedocs/pdf/_static/searchtools.js

[rtd-command-info] start-time: 2023-07-06T21:22:48.528860Z, end-time: 2023-07-06T21:22:48.614507Z, duration: 0, exit-code: 0
cat latexmkrc
$latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S';
$pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S';
$lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S';
$xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S';
$makeindex = 'makeindex -s python.ist %O -o %D %S';
add_cus_dep( "glo", "gls", 0, "makeglo" );
sub makeglo {
 return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" );
}

[rtd-command-info] start-time: 2023-07-06T21:22:49.469119Z, end-time: 2023-07-06T21:22:55.697983Z, duration: 6, exit-code: 0
latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emodpy-malaria -interaction=nonstopmode
Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, <GEN1> chunk 1.
Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, <GEN1> chunk 1.
Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, <GEN1> chunk 1.
Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, <GEN1> chunk 1.
Subroutine makeglo redefined at (eval 11) line 7, <GEN2> chunk 1.
Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, <GEN2> chunk 1.
Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, <GEN2> chunk 1.
Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, <GEN2> chunk 1.
Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, <GEN2> chunk 1.
Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41.
File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex   -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emodpy-malaria"  "emodpy-malaria-docs.tex"'
------------
Latexmk: applying rule 'pdflatex'...
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./emodpy-malaria-docs.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 84 language(s) loaded.
(./sphinxmanual.cls
Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual)
(/usr/share/texlive/texmf-dist/tex/latex/base/report.cls
Document Class: report 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<<t1.cmap>>)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty
(/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def)
(/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf
(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def
(/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def))))
(/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty)))))
(/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty)
(/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)
(/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty
(/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty))
(./sphinxlatexliterals.sty
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix 
<2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty)
(/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty))
(./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty)
(./sphinxhighlight.sty) (./sphinxlatextables.sty
(/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty))
(./sphinxlatexnumfig.sty
(/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty))
(./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty)
(./sphinxlatexindbibtoc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty))
(./sphinxlatexstylepage.sty
(/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty)
(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty))
(./sphinxlatexstyleheadings.sty
(/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty))
(./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty))
(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)
(./sphinxmessages.sty)
Writing index file institute-for-disease-modeling-emodpy-malaria.idx
(./institute-for-disease-modeling-emodpy-malaria.aux)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<<ot1.cmap>><<oml.cmap>><<oms.cma
p>><<omx.cmap>> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] [1] [2]
Chapter 1.

LaTeX Warning: Hyper reference `installation-basic::doc' on page 3 undefined on
 input line 105.

(/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4]
Chapter 2.

Overfull \hbox (57.31381pt too wide) in paragraph at lines 258--258
\T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )|  

Underfull \hbox (badness 5274) in paragraph at lines 305--308
[]\T1/qtm/m/n/10 Set ini-tial risk for low-medium trans-mis-sion set-tings per:
 [][]$https : / / wiki . idmod . org / display / MAL /
[5]
Overfull \hbox (20.56392pt too wide) in paragraph at lines 413--413
\T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )|  

LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics
:module-emodpy_malaria.demographics.MalariaDemographics' on page 6 undefined on
 input line 415.

[6]

LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics
:module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on
 input line 448.


Overfull \hbox (35.49402pt too wide) in paragraph at lines 457--457
\T1/qtm/m/it/10 pop_filename_out=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 spatial_grid
ded_pop_dir\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , 

LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics
:module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on
 input line 459.


LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics
:module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on
 input line 479.


LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics
:module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on
 input line 490.


LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics
:module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on
 input line 518.


LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics
:module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on
 input line 534.


LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics
:module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on
 input line 563.

[7] [8] [9]
Underfull \hbox (badness 10000) in paragraph at lines 733--736
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 743--747
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Underfull \hbox (badness 10000) in paragraph at lines 743--747
\T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1
/txtt/m/n/10 [{ "BitingRisk":"High"},
[10]
Underfull \hbox (badness 10000) in paragraph at lines 878--881
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[11]
Underfull \hbox (badness 10000) in paragraph at lines 888--892
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Underfull \hbox (badness 10000) in paragraph at lines 888--892
\T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1
/txtt/m/n/10 [{ "BitingRisk":"High"},
[12]
Overfull \hbox (27.94388pt too wide) in paragraph at lines 985--985
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (8.55386pt too wide) in paragraph at lines 985--985
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (4.09389pt too wide) in paragraph at lines 985--985
\T1/qtm/m/it/10 out_on_first_occurrence: 
[13]
Underfull \hbox (badness 10000) in paragraph at lines 1026--1029
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 1036--1039
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[14]
Underfull \hbox (badness 10000) in paragraph at lines 1118--1121
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 1128--1131
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Overfull \hbox (31.3137pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 ger_condition_list: 

Overfull \hbox (29.93373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 graphic_coverage: 

Overfull \hbox (61.05371pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (9.43373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 get_age_min: 

Overfull \hbox (11.09373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 get_age_max: 

Overfull \hbox (2.46371pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 get_gender: 

Overfull \hbox (6.86372pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 tial_amount: 

Overfull \hbox (42.41373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 amount_in_shipment: 

Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , 

Overfull \hbox (59.27374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 days_between_shipments: 

Overfull \hbox (11.68375pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 3.40282e+38\T1/qtm/m/n/10 , 

Overfull \hbox (3.82375pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 tion_config: 

Overfull \hbox (1.05374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 tional[][][any] 

Overfull \hbox (60.84373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 max_distributed_per_day: 

Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , 

Overfull \hbox (0.53372pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 max_stock: 

Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , 

Overfull \hbox (2.71375pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 ing_period: 
[15]
Overfull \vbox (11.56755pt too high) has occurred while \output is active
[16]
Underfull \hbox (badness 10000) in paragraph at lines 1203--1206
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[17]
Underfull \hbox (badness 10000) in paragraph at lines 1315--1320
[]\T1/txtt/bx/n/10 diagnostic_type \T1/qtm/m/n/10 ^^U Type of malaria di-ag-nos
-tic used. De-fault is
[18]
Underfull \hbox (badness 10000) in paragraph at lines 1371--1375
[]\T1/qtm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure-

Underfull \hbox (badness 10000) in paragraph at lines 1399--1402
[]\T1/txtt/bx/n/10 measurement_sensitivity \T1/qtm/m/n/10 ^^U Set-ting for \T1/
qtm/b/n/10 Mea-sure-ment_Sensitivity \T1/qtm/m/n/10 in

Underfull \hbox (badness 10000) in paragraph at lines 1428--1434
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v
id-u-al-Prop-erty key:value

Underfull \hbox (badness 10000) in paragraph at lines 1428--1434
\T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t
ic in-ter-ven-

Underfull \hbox (badness 10000) in paragraph at lines 1428--1434
\T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr
opertyValue1"},

Underfull \hbox (badness 10000) in paragraph at lines 1436--1441
[]\T1/txtt/bx/n/10 disqualifying_properties \T1/qtm/m/n/10 ^^U List of In-di-vi
d-u-al-Prop-erty

Underfull \hbox (badness 10000) in paragraph at lines 1436--1441
\T1/qtm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For


Underfull \hbox (badness 10000) in paragraph at lines 1436--1441
\T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu
e1"},
[19]
Underfull \hbox (badness 10000) in paragraph at lines 1464--1468
[]\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 
[{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop-

Overfull \hbox (1.69395pt too wide) in paragraph at lines 1485--1485
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Underfull \hbox (badness 10000) in paragraph at lines 1516--1519
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[20]
Underfull \hbox (badness 10000) in paragraph at lines 1526--1529
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[21]
Overfull \hbox (72.89397pt too wide) in paragraph at lines 1650--1650
\T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received
_Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )|  
[22] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [23]
Overfull \hbox (25.23418pt too wide) in paragraph at lines 1874--1874
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (54.63417pt too wide) in paragraph at lines 1874--1874
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 


LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod
py_malaria.interventions.drug_campaign.add_drug_campaign' on page 24 undefined 
on input line 1877.


Overfull \hbox (30.48416pt too wide) in paragraph at lines 1891--1891
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (59.88416pt too wide) in paragraph at lines 1891--1891
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 


LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod
py_malaria.interventions.drug_campaign.add_drug_campaign' on page 24 undefined 
on input line 1894.

[24]
Overfull \hbox (30.48416pt too wide) in paragraph at lines 1908--1908
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (59.88416pt too wide) in paragraph at lines 1908--1908
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 


LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod
py_malaria.interventions.drug_campaign.add_drug_campaign' on page 25 undefined 
on input line 1911.


Underfull \hbox (badness 10000) in paragraph at lines 1909--1913
[]\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-
ven-tion to your cam-paign. See

Overfull \hbox (40.98413pt too wide) in paragraph at lines 1925--1925
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (70.38412pt too wide) in paragraph at lines 1925--1925
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 


LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod
py_malaria.interventions.drug_campaign.add_drug_campaign' on page 25 undefined 
on input line 1928.

[25]
Overfull \hbox (35.73415pt too wide) in paragraph at lines 1942--1942
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (65.13414pt too wide) in paragraph at lines 1942--1942
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 


LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod
py_malaria.interventions.drug_campaign.add_drug_campaign' on page 26 undefined 
on input line 1945.

[26] [27]
Overfull \hbox (26.20386pt too wide) in paragraph at lines 2099--2099
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (28.42386pt too wide) in paragraph at lines 2099--2099
\T1/qtm/m/it/10 pelling_decay_time_constant: 
[28]
Overfull \hbox (26.20386pt too wide) in paragraph at lines 2178--2178
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (28.42386pt too wide) in paragraph at lines 2178--2178
\T1/qtm/m/it/10 pelling_decay_time_constant: 
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 2384--2387
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 2394--2397
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[32] [33]
Underfull \hbox (badness 10000) in paragraph at lines 2497--2500
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[34]
Underfull \hbox (badness 10000) in paragraph at lines 2587--2590
[]\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^
PTEM-PO-RARY_RAINFALL^^Q, ^^PWA-

Underfull \hbox (badness 10000) in paragraph at lines 2587--2590
\T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P
BRACK-
[35]
Overfull \hbox (54.1938pt too wide) in paragraph at lines 2695--2695
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (1.7138pt too wide) in paragraph at lines 2695--2695
\T1/qtm/m/it/10 leased_infectious: 

Overfull \hbox (19.54382pt too wide) in paragraph at lines 2695--2695
\T1/qtm/m/it/10 leased_microsporidia: 
[36]
Underfull \hbox (badness 10000) in paragraph at lines 2716--2719
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 7576) in paragraph at lines 2732--2734
[]\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t
o re-lease, sets Re-leased_Type =

Underfull \hbox (badness 10000) in paragraph at lines 2743--2746
[]\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec-
tors re-leased that

Underfull \hbox (badness 10000) in paragraph at lines 2743--2746
\T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when

Overfull \hbox (16.29498pt too wide) in paragraph at lines 2743--2746
\T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI
CS' 
[37]
Underfull \hbox (badness 10000) in paragraph at lines 2839--2842
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 2849--2852
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[38]
Overfull \hbox (12.19392pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (14.34396pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 ate_nucleotide_sequence_from: 

Overfull \hbox (79.13393pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: 

Overfull \hbox (118.29388pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: 

Overfull \hbox (74.29391pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 hrp_allele_frequencies_per_genome_location: 
[39]
Underfull \hbox (badness 10000) in paragraph at lines 2935--2938
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 2945--2948
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Underfull \hbox (badness 10000) in paragraph at lines 2986--2992
[]\T1/txtt/bx/n/10 drug_resistant_string \T1/qtm/m/n/10 ^^U Used with `BAR-CODE
_STRING' or `NU-
[40]
Underfull \hbox (badness 10000) in paragraph at lines 3007--3013
[]\T1/txtt/bx/n/10 barcode_allele_frequencies_per_genome_location \T1/qtm/m/n/1
0 ^^U Used with `AL-

Underfull \hbox (badness 10000) in paragraph at lines 3023--3028
[]\T1/txtt/bx/n/10 hrp_allele_frequencies_per_genome_location \T1/qtm/m/n/10 ^^
U Used with `AL-

Overfull \hbox (17.44391pt too wide) in paragraph at lines 3049--3049
\T1/qtm/m/it/10 timesteps_between_repetitions: 
[41]
Underfull \hbox (badness 10000) in paragraph at lines 3082--3085
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 3092--3095
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[42]
Underfull \hbox (badness 10000) in paragraph at lines 3180--3183
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 3190--3193
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[43]
Overfull \hbox (59.44379pt too wide) in paragraph at lines 3280--3280
\T1/qtm/m/it/10 timesteps_between_repetitions: 
[44]
Overfull \hbox (69.94376pt too wide) in paragraph at lines 3357--3357
\T1/qtm/m/it/10 timesteps_between_repetitions: 
[45]
Underfull \hbox (badness 10000) in paragraph at lines 3391--3394
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Overfull \hbox (33.19386pt too wide) in paragraph at lines 3416--3416
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (26.16386pt too wide) in paragraph at lines 3416--3416
\T1/qtm/m/it/10 killing_decay_time_constant: 

Underfull \hbox (badness 10000) in paragraph at lines 3432--3435
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[46] [47]
Underfull \hbox (badness 10000) in paragraph at lines 3550--3553
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[48]
Overfull \hbox (5.13391pt too wide) in paragraph at lines 3652--3652
\T1/qtm/m/it/10 drug_ineligibility_duration: 
[49]
Underfull \hbox (badness 10000) in paragraph at lines 3672--3677
[]\T1/txtt/bx/n/10 is \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 properties of individual
s to target with the intervention.

Underfull \hbox (badness 6094) in paragraph at lines 3672--3677
\T1/txtt/m/sl/10 Default\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 [{ "trigger":"NewC
linicalCase","coverage":0.8,"agemin":15,

Underfull \hbox (badness 10000) in paragraph at lines 3672--3677
\T1/txtt/m/n/10 "agemax":70, "seek":0.4,"rate":0.3},{"trigger":"NewSevereCase",


Underfull \hbox (badness 10000) in paragraph at lines 3695--3697
[]\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h
ave to receive the

Underfull \hbox (badness 10000) in paragraph at lines 3695--3697
\T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi
dualProperty1:PropertyValue1",

Overfull \hbox (39.43362pt too wide) in paragraph at lines 3731--3731
[]\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , 

Overfull \hbox (38.10359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 start_day: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (10.26363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 de- 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 mo- 

Overfull \hbox (71.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 graphic_coverage: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (11.9936pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tar- 

Overfull \hbox (84.11362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 get_num_individuals: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (39.17361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]int[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (36.93362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 node_ids: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (103.05359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 in- 

Overfull \hbox (11.28362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ter- 

Overfull \hbox (14.40361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ven- 

Overfull \hbox (43.04362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tion_name: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (14.07361pt too wide) in paragraph at lines 3731--3731
\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- 

Overfull \hbox (26.47362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ageDe- 

Overfull \hbox (15.26363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pen- 

Overfull \hbox (33.59363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 dentBed- 

Overfull \hbox (14.20361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 dis- 

Overfull \hbox (48.29361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 card_config: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 in- 

Overfull \hbox (13.59363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 sec- 

Overfull \hbox (6.38362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ti- 

Overfull \hbox (17.48363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 cide: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.27359pt too wide) in paragraph at lines 3731--3731
\TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 re- 

Overfull \hbox (83.63359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pelling_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 re- 

Overfull \hbox (86.9436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pelling_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 re- 

Overfull \hbox (117.6336pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pelling_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.63359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (71.9436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (102.6336pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (14.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 730\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.60362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_linear_times: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (72.79362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_linear_values: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (75.51361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_expire_at_end: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (81.41359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 killing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (84.7236pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 killing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (115.4136pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (67.01363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 age_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (14.15363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 sea- 

Overfull \hbox (74.69363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 sonal_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (23.6036pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/txtt/m/n/10 )|  
[50]
Overfull \vbox (839.56755pt too high) has occurred while \output is active
[51]
Underfull \hbox (badness 6188) in paragraph at lines 3736--3741
[]\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect-
Ex-po-nen-tial

Underfull \hbox (badness 10000) in paragraph at lines 3771--3774
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[52] [53]
Overfull \hbox (39.43362pt too wide) in paragraph at lines 3934--3934
[]\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , 

Overfull \hbox (38.10359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 start_day: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (10.26363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 de- 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 mo- 

Overfull \hbox (71.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 graphic_coverage: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (36.93362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 node_ids: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (103.05359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 trig- 

Overfull \hbox (73.31358pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ger_condition_list: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 trig- 

Overfull \hbox (93.44359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 gered_campaign_delay: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (46.39362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]float[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (10.27362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 lis- 

Overfull \hbox (12.89363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ten- 

Overfull \hbox (52.80362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (0.82362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 - 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 in- 

Overfull \hbox (11.28362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ter- 

Overfull \hbox (14.40361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ven- 

Overfull \hbox (43.04362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tion_name: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (14.07361pt too wide) in paragraph at lines 3934--3934
\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- 

Overfull \hbox (26.47362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ageDe- 

Overfull \hbox (15.26363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pen- 

Overfull \hbox (33.59363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 dentBed- 

Overfull \hbox (14.20361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 dis- 

Overfull \hbox (48.29361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 card_config: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 in- 

Overfull \hbox (13.59363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 sec- 

Overfull \hbox (6.38362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ti- 

Overfull \hbox (17.48363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 cide: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.27359pt too wide) in paragraph at lines 3934--3934
\TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 re- 

Overfull \hbox (83.63359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pelling_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 re- 

Overfull \hbox (86.9436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pelling_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 re- 

Overfull \hbox (117.6336pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pelling_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.63359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (71.9436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (102.6336pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (14.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 730\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.60362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_linear_times: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (72.79362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_linear_values: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (75.51361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_expire_at_end: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (81.41359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 killing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (84.7236pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 killing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (115.4136pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (67.01363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 age_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (14.15363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 sea- 

Overfull \hbox (74.69363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 sonal_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (23.6036pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/txtt/m/n/10 )|  
[54]
Overfull \vbox (979.56999pt too high) has occurred while \output is active
[55]
Underfull \hbox (badness 6188) in paragraph at lines 3939--3945
[]\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect-
Ex-po-nen-tial

Underfull \hbox (badness 10000) in paragraph at lines 3970--3973
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[56] [57]
Overfull \hbox (88.19377pt too wide) in paragraph at lines 4147--4147
\T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso
n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )|  
[58]
Underfull \hbox (badness 10000) in paragraph at lines 4191--4194
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 4201--4204
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[59]
Underfull \hbox (badness 10000) in paragraph at lines 4304--4307
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 4314--4317
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[60] [61]
Overfull \hbox (31.91403pt too wide) in paragraph at lines 4485--4485
\T1/qtm/m/it/10 cific_genome_combinations_for_stratification: 
[62]
Underfull \hbox (badness 5119) in paragraph at lines 4535--4542
\T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_
GENOME^^Q spe-
[63] [64] [65]
Overfull \hbox (2.92401pt too wide) in paragraph at lines 4859--4859
\T1/qtm/m/it/10 clude_30day_avg_infection_duration: 
[66]
Overfull \hbox (6.20389pt too wide) in paragraph at lines 4932--4932
\T1/qtm/m/it/10 must_have_ip_key_value: 

Overfull \hbox (1.87387pt too wide) in paragraph at lines 4932--4932
\T1/qtm/m/it/10 must_have_intervention: 

Overfull \hbox (55.41386pt too wide) in paragraph at lines 4932--4932
\T1/qtm/m/it/10 clude_30day_avg_infection_duration: 
[67]
Underfull \hbox (badness 5119) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T
emperature^^Q, ^^PBirths^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite
_Prevalence^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^
^Q, ^^PDis-ease_Deaths^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga
metocyte_Prevalence^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u
-la-tion^^Q, ^^PPreva-

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr
evalence^^Q De-faults:
[68] [69] [70] [71] [72] [73]
Overfull \hbox (4.70392pt too wide) in paragraph at lines 5611--5611
\T1/qtm/m/it/10 ify_by_clinical_symptoms: 

Overfull \hbox (38.49373pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 drug_resistant_strings: 

Overfull \hbox (102.98372pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 drug_resistant_and_hrp_statistic_type: 

Overfull \hbox (156.42372pt too wide) in paragraph at lines 5657--5657
\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m
/it/10 '\T1/qtm/m/n/10 , 

Overfull \hbox (18.46376pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 ip_key_to_collect: 

Overfull \hbox (4.78375pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 ify_by_gender: 

Overfull \hbox (37.74379pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 clude_identity_by_xxx: 
[74] [75]
Overfull \hbox (5.15385pt too wide) in paragraph at lines 5763--5763
\T1/qtm/m/it/10 clude_microsporidia: 
[76]
Underfull \hbox (badness 7308) in paragraph at lines 5833--5835
[]\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or 
ex-clude, de-pend-ing on value of
[77] [78]
Underfull \hbox (badness 10000) in paragraph at lines 6040--6043
\T1/qtm/m/n/10 im-plies one should get data on days Start_Day, Start_Day+Sampli
ng_Period,
[79] [80]
Underfull \hbox (badness 10000) in paragraph at lines 6217--6223
[]\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma
lar-i-a-Trans-mis-sion.csv) is a csv re-

Underfull \hbox (badness 6592) in paragraph at lines 6217--6223
\T1/qtm/m/n/10 port that pro-vides data on malaria trans-mis-sion, by track-ing
 who trans-mit-ted malaria to whom.

Underfull \hbox (badness 10000) in paragraph at lines 6217--6223
\T1/qtm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram
-e-ter \T1/qtm/b/n/10 Malaria_Model \T1/qtm/m/n/10 is set to

Underfull \hbox (badness 5388) in paragraph at lines 6217--6223
\T1/qtm/m/n/10 MALARIA_MECHANISTIC_MODEL_WITH_CO_TRANSMISSION. This re-port is 
typ-i-cally used as
[81] [82] [83]
Overfull \hbox (3.4238pt too wide) in paragraph at lines 6581--6581
\T1/qtm/m/it/10 ing.Optional[str] 
[84] [85] [86]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_request:emodpy_m
alaria.weather.weather_request.WeatherRequest' on page 87 undefined on input li
ne 6806.

[87]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 88 undefined on input
 line 6890.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherAttributes' on page 88 undefined on inp
ut line 6890.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 88 undefined on input
 line 6890.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_set:emodpy_malar
ia.weather.weather_set.WeatherSet' on page 88 undefined on input line 6890.


Overfull \hbox (21.75932pt too wide) in paragraph at lines 6890--6890
\T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w
eather_variable.WeatherVariable\T1/qtm/m/it/10 , 

Overfull \hbox (12.24933pt too wide) in paragraph at lines 6890--6890
\T1/qtm/m/it/10 tional[][][\T1/qtm/m/n/10 emodpy_malaria.weather.weather_metada
ta.WeatherAttributes\T1/qtm/m/it/10 ] 

Overfull \hbox (21.75932pt too wide) in paragraph at lines 6890--6890
\T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w
eather_variable.WeatherVariable\T1/qtm/m/it/10 , 

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 88 undefined on input
 line 6949.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 88 undefined on input
 line 6949.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherAttributes' on page 88 undefined on inp
ut line 6949.


Overfull \hbox (21.75932pt too wide) in paragraph at lines 6949--6949
\T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w
eather_variable.WeatherVariable\T1/qtm/m/it/10 , 

Overfull \hbox (21.75932pt too wide) in paragraph at lines 6949--6949
\T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w
eather_variable.WeatherVariable\T1/qtm/m/it/10 , 
[88]
Overfull \hbox (5.21489pt too wide) in paragraph at lines 6981--6984
[]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherMetadata' on page 89 undefined on input
 line 7024.


Overfull \hbox (93.4591pt too wide) in paragraph at lines 7024--7024
\T1/qtm/m/it/10 tional[][][\T1/qtm/m/n/10 emodpy_malaria.weather.weather_metada
ta.WeatherMetadata\T1/qtm/m/it/10 ] 
[89]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherMetadata' on page 90 undefined on input
 line 1.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherAttributes' on page 90 undefined on inp
ut line 7060.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala
ria.weather.weather_data.WeatherData' on page 90 undefined on input line 7060.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala
ria.weather.weather_data.DataFrameInfo' on page 90 undefined on input line 7119
.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherAttributes' on page 90 undefined on inp
ut line 7119.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala
ria.weather.weather_data.WeatherData' on page 90 undefined on input line 7119.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala
ria.weather.weather_data.DataFrameInfo' on page 90 undefined on input line 7150
.

[90]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala
ria.weather.weather_data.DataFrameInfo' on page 91 undefined on input line 7176
.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherAttributes' on page 91 undefined on inp
ut line 7176.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala
ria.weather.weather_data.WeatherData' on page 91 undefined on input line 7176.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala
ria.weather.weather_data.DataFrameInfo' on page 91 undefined on input line 7207
.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala
ria.weather.weather_data.WeatherData' on page 91 undefined on input line 7226.

[91]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala
ria.weather.weather_data.DataFrameInfo' on page 92 undefined on input line 7295
.

[92]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherMetadata' on page 93 undefined on input
 line 7464.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherAttributes' on page 93 undefined on inp
ut line 7464.


Overfull \hbox (162.65897pt too wide) in paragraph at lines 7464--7464
\T1/qtm/m/it/10 tional[][][[][]Union[][][\T1/qtm/m/n/10 emodpy_malaria.weather.
weather_metadata.WeatherMetadata\T1/qtm/m/it/10 , 

Overfull \hbox (109.32397pt too wide) in paragraph at lines 7464--7464
\T1/qtm/m/n/10 emodpy_malaria.weather.weather_metadata.WeatherAttributes\T1/qtm
/m/it/10 , 

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherAttributes' on page 93 undefined on inp
ut line 7466.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherAttributes' on page 93 undefined on inp
ut line 1.

[93]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherMetadata' on page 94 undefined on input
 line 7601.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 94 undefined on input
 line 1.

[94]
Overfull \hbox (79.22398pt too wide) in paragraph at lines 7694--7694
\T1/qtm/m/it/10 tools_platform_comps.comps_platform.COMPSPlatform[][]]\T1/qtm/m
/n/10 , 

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_request:emodpy_m
alaria.weather.weather_request.RequestReport' on page 95 undefined on input lin
e 1.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_request:emodpy_m
alaria.weather.weather_request.WeatherArgs' on page 95 undefined on input line 
7748.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_request:emodpy_m
alaria.weather.weather_request.WeatherRequest' on page 95 undefined on input li
ne 7748.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_request:emodpy_m
alaria.weather.weather_request.WeatherRequest' on page 95 undefined on input li
ne 7778.

[95]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 96 undefined on input
 line 7817.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 96 undefined on input
 line 7817.


Overfull \hbox (95.25911pt too wide) in paragraph at lines 7817--7817
\T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w
eather_variable.WeatherVariable\T1/qtm/m/it/10 , 

Overfull \hbox (95.25911pt too wide) in paragraph at lines 7817--7817
\T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w
eather_variable.WeatherVariable\T1/qtm/m/it/10 , 

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala
ria.weather.weather_data.WeatherData' on page 96 undefined on input line 7840.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 96 undefined on input
 line 1.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherAttributes' on page 96 undefined on inp
ut line 1.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 96 undefined on input
 line 1.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 96 undefined on input
 line 1.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 96 undefined on input
 line 7900.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherAttributes' on page 96 undefined on inp
ut line 7900.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_set:emodpy_malar
ia.weather.weather_set.WeatherSet' on page 96 undefined on input line 7900.

[96]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 97 undefined on input
 line 7940.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_
malaria.weather.weather_metadata.WeatherAttributes' on page 97 undefined on inp
ut line 7940.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_set:emodpy_malar
ia.weather.weather_set.WeatherSet' on page 97 undefined on input line 7940.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 97 undefined on input
 line 7980.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 97 undefined on input
 line 8011.

[97]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 98 undefined on input
 line 8046.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_set:emodpy_malar
ia.weather.weather_set.WeatherSet' on page 98 undefined on input line 8046.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 98 undefined on input
 line 8076.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 98 undefined on input
 line 8085.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 98 undefined on input
 line 8085.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 98 undefined on input
 line 8085.


Underfull \hbox (badness 10000) in paragraph at lines 8120--8124
[]\T1/qtm/m/n/10 For ex-am-ple, air

Underfull \hbox (badness 10000) in paragraph at lines 8120--8124
\T1/qtm/m/n/10 tem-per-a-ture could be rep-re-sented as: Weath-er-Vari-able.AIR
_TEMPERATURE:

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 98 undefined on input
 line 8135.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 98 undefined on input
 line 8135.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 98 undefined on input
 line 8135.


Overfull \hbox (23.48941pt too wide) in paragraph at lines 8135--8135
\T1/qtm/m/it/10 tional[][][[][]List[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w
eather_variable.WeatherVariable\T1/qtm/m/it/10 ]] 

Overfull \hbox (20.51942pt too wide) in paragraph at lines 8135--8135
\T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w
eather_variable.WeatherVariable\T1/qtm/m/it/10 , 
[98]
Overfull \hbox (21.12492pt too wide) in paragraph at lines 8163--8166
[]

Underfull \hbox (badness 10000) in paragraph at lines 8163--8166
\T1/qtm/m/n/10 In this case low-er-case weather vari-able names are used, for e
x-am-ple:
[99]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 100 undefined on inpu
t line 8372.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 100 undefined on inpu
t line 8372.


LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 100 undefined on inpu
t line 8372.

[100]

LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_
malaria.weather.weather_variable.WeatherVariable' on page 101 undefined on inpu
t line 8391.


Underfull \hbox (badness 10000) in paragraph at lines 8451--8454
[]\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s
im-u-la-tions Malaria_Model =

Underfull \hbox (badness 6510) in paragraph at lines 8465--8467
[]\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u
es are ^^PFIXED_NEIGHBORHOOD^^Q,
[101]
Underfull \hbox (badness 10000) in paragraph at lines 8615--8619
\T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^
PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] =
[102]
Overfull \hbox (31.99455pt too wide) in paragraph at lines 8675--8678
[]\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Female_to_Male_Transmission_Probability

Overfull \hbox (24.19456pt too wide) in paragraph at lines 8680--8683
[]\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 
Mi-crosporidia_Female_To_Egg_Transmission_Probability

Overfull \hbox (34.43456pt too wide) in paragraph at lines 8685--8688
[]\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Male_To_Female_Transmission_Probability

Overfull \hbox (4.75461pt too wide) in paragraph at lines 8690--8694
[]\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi
-crosporidia_Male_To_Egg_Transmission_Probability

Underfull \hbox (badness 10000) in paragraph at lines 8696--8704
[]\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 
^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 8719--8727
[]\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10
 ^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 8719--8727
\T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm
/m/n/10 , A dic-tio-nary for
[103] [104] [105] [106] [107] [108] [109] [110]
Underfull \hbox (badness 10000) in paragraph at lines 9477--9481
\T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^
PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] =
[111]
Overfull \hbox (31.99455pt too wide) in paragraph at lines 9537--9540
[]\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Female_to_Male_Transmission_Probability

Overfull \hbox (24.19456pt too wide) in paragraph at lines 9542--9545
[]\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 
Mi-crosporidia_Female_To_Egg_Transmission_Probability

Overfull \hbox (34.43456pt too wide) in paragraph at lines 9547--9550
[]\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Male_To_Female_Transmission_Probability

Overfull \hbox (4.75461pt too wide) in paragraph at lines 9552--9556
[]\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi
-crosporidia_Male_To_Egg_Transmission_Probability

Underfull \hbox (badness 10000) in paragraph at lines 9558--9566
[]\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 
^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 9581--9589
[]\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10
 ^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 9581--9589
\T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm
/m/n/10 , A dic-tio-nary for
[112] [113] [114]
Chapter 3.

LaTeX Warning: Hyper reference `faq:what-are-some-of-the-key-differences-for-pe
ople-used-to-using-dtk-tools' on page 115 undefined on input line 9661.


LaTeX Warning: Hyper reference `faq:do-i-need-to-install-a-whole-bunch-of-pytho
n-modules-where-do-i-get-that-list' on page 115 undefined on input line 9665.


LaTeX Warning: Hyper reference `faq:is-there-an-easier-way-than-typing-index-ur
l-with-that-long-url-every-time-i-use-pip' on page 115 undefined on input line 
9669.


LaTeX Warning: Hyper reference `faq:how-do-i-find-the-path-or-file-to-my-pip-in
i' on page 115 undefined on input line 9673.


LaTeX Warning: Hyper reference `faq:what-if-the-pip-ini-file-or-pip-folder-does
n-t-exist' on page 115 undefined on input line 9677.


LaTeX Warning: Hyper reference `faq:what-s-the-text-i-need-to-enter-into-my-pip
-config-file' on page 115 undefined on input line 9681.


LaTeX Warning: Hyper reference `faq:i-was-installing-the-python-modules-and-it-
told-me-i-needed-a-c-compiler' on page 115 undefined on input line 9685.


LaTeX Warning: Hyper reference `faq:i-was-installing-and-got-prompted-for-jfrog
-credentials' on page 115 undefined on input line 9689.


LaTeX Warning: Hyper reference `faq:what-if-i-really-actually-do-want-to-instal
l-something-from-staging' on page 115 undefined on input line 9693.


LaTeX Warning: Hyper reference `faq:what-version-of-python-should-i-be-using' o
n page 115 undefined on input line 9697.


LaTeX Warning: Hyper reference `faq:what-if-i-want-a-particular-version-of-emod
py-malaria' on page 115 undefined on input line 9701.


LaTeX Warning: Hyper reference `faq:what-if-i-want-to-make-changes-to-emodpy-ma
laria-and-run-with-those-instead-of-a-released-version' on page 115 undefined o
n input line 9705.


LaTeX Warning: Hyper reference `faq:i-pip-installed-emodpy-malaria-but-i-want-t
o-make-changes-how-should-i-do-that' on page 115 undefined on input line 9709.


LaTeX Warning: Hyper reference `faq:how-do-i-set-configuration-parameters' on p
age 115 undefined on input line 9713.


LaTeX Warning: Hyper reference `faq:how-do-i-specify-the-log-level-for-emod-s-i
-get-a-schema-error-when-i-try-to-set-it-now' on page 115 undefined on input li
ne 9717.


LaTeX Warning: Hyper reference `faq:how-do-i-specify-the-vector-species-for-my-
scenario' on page 115 undefined on input line 9721.


LaTeX Warning: Hyper reference `faq:where-else-should-i-search-for-functions' o
n page 115 undefined on input line 9725.


LaTeX Warning: Hyper reference `faq:do-i-need-to-be-connected-to-the-vpn' on pa
ge 115 undefined on input line 9729.


LaTeX Warning: Hyper reference `faq:is-there-an-example-of-creating-a-demograph
ics-file-from-scratch-with-the-api' on page 115 undefined on input line 9733.


LaTeX Warning: Hyper reference `faq:i-see-a-lot-of-malaria-sim-examples-are-the
re-any-vector-sim-examples' on page 115 undefined on input line 9737.


LaTeX Warning: Hyper reference `faq:is-there-a-multi-node-or-spatial-example' o
n page 115 undefined on input line 9741.


LaTeX Warning: Hyper reference `faq:are-there-simple-campaign-intervention-exam
ples' on page 115 undefined on input line 9745.


LaTeX Warning: Hyper reference `faq:is-there-a-drug-campaign-example' on page 1
15 undefined on input line 9749.


LaTeX Warning: Hyper reference `faq:is-there-a-campaign-sweep-example' on page 
115 undefined on input line 9753.


LaTeX Warning: Hyper reference `faq:is-there-a-demographics-sweep-example' on p
age 115 undefined on input line 9757.


LaTeX Warning: Hyper reference `faq:is-there-a-serialization-burn-in-example' o
n page 115 undefined on input line 9761.


LaTeX Warning: Hyper reference `faq:is-there-a-reporter-configuration-example' 
on page 115 undefined on input line 9765.

[115] [116] [117]
Overfull \hbox (15.08487pt too wide) in paragraph at lines 9851--9853
\T1/qtm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/<userna
me>@idmod.org:<shh...password>@packages.idmod.org/api/pypi/pypi-
[118] [119] [120] [121] [122] [123] [124]

LaTeX Warning: Reference `emodpy_malaria:module-emodpy_malaria' on page 125 und
efined on input line 10198.


LaTeX Warning: Reference `emodpy_malaria.demographics:module-emodpy_malaria.dem
ographics' on page 125 undefined on input line 10199.


LaTeX Warning: Reference `emodpy_malaria.demographics.MalariaDemographics:modul
e-emodpy_malaria.demographics.MalariaDemographics' on page 125 undefined on inp
ut line 10200.


Overfull \hbox (19.37178pt too wide) in paragraph at lines 10200--10201
[]\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10
 ,

LaTeX Warning: Reference `emodpy_malaria.interventions:module-emodpy_malaria.in
terventions' on page 125 undefined on input line 10201.


LaTeX Warning: Reference `emodpy_malaria.interventions.adherentdrug:module-emod
py_malaria.interventions.adherentdrug' on page 125 undefined on input line 1020
2.


LaTeX Warning: Reference `emodpy_malaria.interventions.bednet:module-emodpy_mal
aria.interventions.bednet' on page 125 undefined on input line 10203.


LaTeX Warning: Reference `emodpy_malaria.interventions.common:module-emodpy_mal
aria.interventions.common' on page 125 undefined on input line 10204.


LaTeX Warning: Reference `emodpy_malaria.interventions.community_health_worker:
module-emodpy_malaria.interventions.community_health_worker' on page 125 undefi
ned on input line 10205.


Overfull \hbox (45.6217pt too wide) in paragraph at lines 10205--10206
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m
/n/10 ,

LaTeX Warning: Reference `emodpy_malaria.interventions.diag_survey:module-emodp
y_malaria.interventions.diag_survey' on page 125 undefined on input line 10206.



LaTeX Warning: Reference `emodpy_malaria.interventions.drug:module-emodpy_malar
ia.interventions.drug' on page 125 undefined on input line 10207.


LaTeX Warning: Reference `emodpy_malaria.interventions.drug_campaign:module-emo
dpy_malaria.interventions.drug_campaign' on page 125 undefined on input line 10
208.


Underfull \hbox (badness 10000) in paragraph at lines 10208--10209
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ,

LaTeX Warning: Reference `emodpy_malaria.interventions.inputeir:module-emodpy_m
alaria.interventions.inputeir' on page 125 undefined on input line 10209.


LaTeX Warning: Reference `emodpy_malaria.interventions.irs:module-emodpy_malari
a.interventions.irs' on page 125 undefined on input line 10210.


LaTeX Warning: Reference `emodpy_malaria.interventions.ivermectin:module-emodpy
_malaria.interventions.ivermectin' on page 125 undefined on input line 10211.


LaTeX Warning: Reference `emodpy_malaria.interventions.larvicide:module-emodpy_
malaria.interventions.larvicide' on page 125 undefined on input line 10212.


LaTeX Warning: Reference `emodpy_malaria.interventions.malaria_challenge:module
-emodpy_malaria.interventions.malaria_challenge' on page 125 undefined on input
 line 10213.


Overfull \hbox (14.1218pt too wide) in paragraph at lines 10213--10214
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.malaria_challenge\T1/qtm/m/n/10 
,

LaTeX Warning: Reference `emodpy_malaria.interventions.mosquitorelease:module-e
modpy_malaria.interventions.mosquitorelease' on page 125 undefined on input lin
e 10214.


Overfull \hbox (3.62183pt too wide) in paragraph at lines 10214--10215
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ,

LaTeX Warning: Reference `emodpy_malaria.interventions.outbreak:module-emodpy_m
alaria.interventions.outbreak' on page 125 undefined on input line 10215.


LaTeX Warning: Reference `emodpy_malaria.interventions.outdoorrestkill:module-e
modpy_malaria.interventions.outdoorrestkill' on page 125 undefined on input lin
e 10216.


Overfull \hbox (3.62183pt too wide) in paragraph at lines 10216--10217
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 ,

LaTeX Warning: Reference `emodpy_malaria.interventions.scale_larval_habitats:mo
dule-emodpy_malaria.interventions.scale_larval_habitats' on page 125 undefined 
on input line 10217.


Overfull \hbox (35.12173pt too wide) in paragraph at lines 10217--10218
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n
/10 ,

LaTeX Warning: Reference `emodpy_malaria.interventions.spacespraying:module-emo
dpy_malaria.interventions.spacespraying' on page 125 undefined on input line 10
218.


Underfull \hbox (badness 10000) in paragraph at lines 10218--10219
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ,

LaTeX Warning: Reference `emodpy_malaria.interventions.sugartrap:module-emodpy_
malaria.interventions.sugartrap' on page 125 undefined on input line 10219.


LaTeX Warning: Reference `emodpy_malaria.interventions.treatment_seeking:module
-emodpy_malaria.interventions.treatment_seeking' on page 125 undefined on input
 line 10220.


Overfull \hbox (14.1218pt too wide) in paragraph at lines 10220--10221
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 
,

LaTeX Warning: Reference `emodpy_malaria.interventions.usage_dependent_bednet:m
odule-emodpy_malaria.interventions.usage_dependent_bednet' on page 125 undefine
d on input line 10221.


Overfull \hbox (40.37172pt too wide) in paragraph at lines 10221--10222
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/
n/10 ,

LaTeX Warning: Reference `emodpy_malaria.interventions.vaccine:module-emodpy_ma
laria.interventions.vaccine' on page 125 undefined on input line 10222.


LaTeX Warning: Reference `emodpy_malaria.malaria_config:module-emodpy_malaria.m
alaria_config' on page 125 undefined on input line 10223.


LaTeX Warning: Reference `emodpy_malaria.malaria_vector_species_params:module-e
modpy_malaria.malaria_vector_species_params' on page 125 undefined on input lin
e 10224.


Overfull \hbox (3.62183pt too wide) in paragraph at lines 10224--10225
[]\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 ,

LaTeX Warning: Reference `emodpy_malaria.reporters:module-emodpy_malaria.report
ers' on page 125 undefined on input line 10225.


LaTeX Warning: Reference `emodpy_malaria.reporters.builtin:module-emodpy_malari
a.reporters.builtin' on page 125 undefined on input line 10226.


LaTeX Warning: Reference `emodpy_malaria.vector_config:module-emodpy_malaria.ve
ctor_config' on page 125 undefined on input line 10227.


LaTeX Warning: Reference `emodpy_malaria.weather:module-emodpy_malaria.weather'
 on page 125 undefined on input line 10228.


LaTeX Warning: Reference `emodpy_malaria.weather.data_sources:module-emodpy_mal
aria.weather.data_sources' on page 125 undefined on input line 10229.


LaTeX Warning: Reference `emodpy_malaria.weather.weather_data:module-emodpy_mal
aria.weather.weather_data' on page 125 undefined on input line 10230.


LaTeX Warning: Reference `emodpy_malaria.weather.weather_metadata:module-emodpy
_malaria.weather.weather_metadata' on page 125 undefined on input line 10231.


LaTeX Warning: Reference `emodpy_malaria.weather.weather_request:module-emodpy_
malaria.weather.weather_request' on page 125 undefined on input line 10232.


LaTeX Warning: Reference `emodpy_malaria.weather.weather_set:module-emodpy_mala
ria.weather.weather_set' on page 125 undefined on input line 10233.


LaTeX Warning: Reference `emodpy_malaria.weather.weather_utils:module-emodpy_ma
laria.weather.weather_utils' on page 125 undefined on input line 10234.


LaTeX Warning: Reference `emodpy_malaria.weather.weather_variable:module-emodpy
_malaria.weather.weather_variable' on page 125 undefined on input line 10235.

[125]
No file institute-for-disease-modeling-emodpy-malaria.ind.
(./institute-for-disease-modeling-emodpy-malaria.aux)

Package rerunfilecheck Warning: File `institute-for-disease-modeling-emodpy-mal
aria.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.


LaTeX Warning: There were undefined references.


LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.

 )
(see the transcript file for additional information){/usr/share/texmf/fonts/enc
/dvips/tex-gyre/q-ec.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r
.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}</usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texmf/fonts/type1/public/tex-
gyre/qhvb.pfb></usr/share/texmf/fonts/type1/public/tex-gyre/qhvr.pfb></usr/shar
e/texmf/fonts/type1/public/tex-gyre/qtmb.pfb></usr/share/texmf/fonts/type1/publ
ic/tex-gyre/qtmr.pfb></usr/share/texmf/fonts/type1/public/tex-gyre/qtmri.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/txfonts/t1xbtt.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/txfonts/t1xbtt.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/txfonts/t1xtt.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/txfonts/t1xtt.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/txfonts/tcxbtt.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/txfo
nts/tcxtt.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb>
Output written on institute-for-disease-modeling-emodpy-malaria.pdf (129 pages,
 532543 bytes).
Transcript written on institute-for-disease-modeling-emodpy-malaria.log.
Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written
Latexmk: Missing input file: 'institute-for-disease-modeling-emodpy-malaria.ind' from line
  'No file institute-for-disease-modeling-emodpy-malaria.ind.'
Latexmk: References changed.
Latexmk: References changed.
Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf'
Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf'
Latexmk: List of undefined refs and citations:
  Reference `emodpy_malaria.demographics.MalariaDemographics:module-emodpy_malaria.demographics.MalariaDemographics' on page 125 undefined on input line 10200
  Reference `emodpy_malaria.demographics:module-emodpy_malaria.demographics' on page 125 undefined on input line 10199
  Reference `emodpy_malaria.interventions.adherentdrug:module-emodpy_malaria.interventions.adherentdrug' on page 125 undefined on input line 10202
  Reference `emodpy_malaria.interventions.bednet:module-emodpy_malaria.interventions.bednet' on page 125 undefined on input line 10203
  Reference `emodpy_malaria.interventions.common:module-emodpy_malaria.interventions.common' on page 125 undefined on input line 10204
  Reference `emodpy_malaria.interventions.community_health_worker:module-emodpy_malaria.interventions.community_health_worker' on page 125 undefined on input line 10205
  Reference `emodpy_malaria.interventions.diag_survey:module-emodpy_malaria.interventions.diag_survey' on page 125 undefined on input line 10206
  Reference `emodpy_malaria.interventions.drug:module-emodpy_malaria.interventions.drug' on page 125 undefined on input line 10207
  Reference `emodpy_malaria.interventions.drug_campaign:module-emodpy_malaria.interventions.drug_campaign' on page 125 undefined on input line 10208
  Reference `emodpy_malaria.interventions.inputeir:module-emodpy_malaria.interventions.inputeir' on page 125 undefined on input line 10209
  Reference `emodpy_malaria.interventions.irs:module-emodpy_malaria.interventions.irs' on page 125 undefined on input line 10210
  Reference `emodpy_malaria.interventions.ivermectin:module-emodpy_malaria.interventions.ivermectin' on page 125 undefined on input line 10211
  Reference `emodpy_malaria.interventions.larvicide:module-emodpy_malaria.interventions.larvicide' on page 125 undefined on input line 10212
  Reference `emodpy_malaria.interventions.malaria_challenge:module-emodpy_malaria.interventions.malaria_challenge' on page 125 undefined on input line 10213
  Reference `emodpy_malaria.interventions.mosquitorelease:module-emodpy_malaria.interventions.mosquitorelease' on page 125 undefined on input line 10214
  Reference `emodpy_malaria.interventions.outbreak:module-emodpy_malaria.interventions.outbreak' on page 125 undefined on input line 10215
  Reference `emodpy_malaria.interventions.outdoorrestkill:module-emodpy_malaria.interventions.outdoorrestkill' on page 125 undefined on input line 10216
  Reference `emodpy_malaria.interventions.scale_larval_habitats:module-emodpy_malaria.interventions.scale_larval_habitats' on page 125 undefined on input line 10217
  Reference `emodpy_malaria.interventions.spacespraying:module-emodpy_malaria.interventions.spacespraying' on page 125 undefined on input line 10218
  Reference `emodpy_malaria.interventions.sugartrap:module-emodpy_malaria.interventions.sugartrap' on page 125 undefined on input line 10219
  Reference `emodpy_malaria.interventions.treatment_seeking:module-emodpy_malaria.interventions.treatment_seeking' on page 125 undefined on input line 10220
  Reference `emodpy_malaria.interventions.usage_dependent_bednet:module-emodpy_malaria.interventions.usage_dependent_bednet' on page 125 undefined on input line 10221
  Reference `emodpy_malaria.interventions.vaccine:module-emodpy_malaria.interventions.vaccine' on page 125 undefined on input line 10222
  Reference `emodpy_malaria.interventions:module-emodpy_malaria.interventions' on page 125 undefined on input line 10201
  Reference `emodpy_malaria.malaria_config:module-emodpy_malaria.malaria_config' on page 125 undefined on input line 10223
  Reference `emodpy_malaria.malaria_vector_species_params:module-emodpy_malaria.malaria_vector_species_params' on page 125 undefined on input line 10224
  Reference `emodpy_malaria.reporters.builtin:module-emodpy_malaria.reporters.builtin' on page 125 undefined on input line 10226
  Reference `emodpy_malaria.reporters:module-emodpy_malaria.reporters' on page 125 undefined on input line 10225
  Reference `emodpy_malaria.vector_config:module-emodpy_malaria.vector_config' on page 125 undefined on input line 10227
  Reference `emodpy_malaria.weather.data_sources:module-emodpy_malaria.weather.data_sources' on page 125 undefined on input line 10229
  Reference `emodpy_malaria.weather.weather_data:module-emodpy_malaria.weather.weather_data' on page 125 undefined on input line 10230
  Reference `emodpy_malaria.weather.weather_metadata:module-emodpy_malaria.weather.weather_metadata' on page 125 undefined on input line 10231
  Reference `emodpy_malaria.weather.weather_request:module-emodpy_malaria.weather.weather_request' on page 125 undefined on input line 10232
  Reference `emodpy_malaria.weather.weather_set:module-emodpy_malaria.weather.weather_set' on page 125 undefined on input line 10233
  Reference `emodpy_malaria.weather.weather_utils:module-emodpy_malaria.weather.weather_utils' on page 125 undefined on input line 10234
  Reference `emodpy_malaria.weather.weather_variable:module-emodpy_malaria.weather.weather_variable' on page 125 undefined on input line 10235
  Reference `emodpy_malaria.weather:module-emodpy_malaria.weather' on page 125 undefined on input line 10228
  Reference `emodpy_malaria:module-emodpy_malaria' on page 125 undefined on input line 10198
Latexmk: Summary of warnings:
  Latex failed to resolve 39 reference(s)
Rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx': File changes, etc:
   Non-existent destination files:
      'institute-for-disease-modeling-emodpy-malaria.ind'
------------
Run number 1 of rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx'
------------
------------
Running 'makeindex -s python.ist  -o "institute-for-disease-modeling-emodpy-malaria.ind" "institute-for-disease-modeling-emodpy-malaria.idx"'
------------
Latexmk: applying rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx'...
This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support).
Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored).
Scanning input file institute-for-disease-modeling-emodpy-malaria.idx....done (368 entries accepted, 0 rejected).
Sorting entries......done (3243 comparisons).
Generating output file institute-for-disease-modeling-emodpy-malaria.ind....done (764 lines written, 0 warnings).
Output written in institute-for-disease-modeling-emodpy-malaria.ind.
Transcript written in institute-for-disease-modeling-emodpy-malaria.ilg.
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'institute-for-disease-modeling-emodpy-malaria.aux'
      'institute-for-disease-modeling-emodpy-malaria.ind'
------------
Run number 2 of rule 'pdflatex'
------------
------------
Running 'pdflatex   -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emodpy-malaria"  "emodpy-malaria-docs.tex"'
------------
Latexmk: applying rule 'pdflatex'...
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./emodpy-malaria-docs.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 84 language(s) loaded.
(./sphinxmanual.cls
Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual)
(/usr/share/texlive/texmf-dist/tex/latex/base/report.cls
Document Class: report 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<<t1.cmap>>)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty
(/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def)
(/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf
(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def
(/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def))))
(/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty)))))
(/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty)
(/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)
(/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty
(/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty))
(./sphinxlatexliterals.sty
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix 
<2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty)
(/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty))
(./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty)
(./sphinxhighlight.sty) (./sphinxlatextables.sty
(/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty))
(./sphinxlatexnumfig.sty
(/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty))
(./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty)
(./sphinxlatexindbibtoc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty))
(./sphinxlatexstylepage.sty
(/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty)
(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty))
(./sphinxlatexstyleheadings.sty
(/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty))
(./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty))
(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)
(./sphinxmessages.sty)
Writing index file institute-for-disease-modeling-emodpy-malaria.idx
(./institute-for-disease-modeling-emodpy-malaria.aux)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./institute-for-disease-modeling-emodpy-malaria.out)
(./institute-for-disease-modeling-emodpy-malaria.out)
(/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<<ot1.cmap>><<oml.cmap>><<oms.cma
p>><<omx.cmap>> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] [2]
(./institute-for-disease-modeling-emodpy-malaria.toc) [1] [2] [1] [2]
Chapter 1.
(/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4]
Chapter 2.

Overfull \hbox (57.31381pt too wide) in paragraph at lines 258--258
\T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )|  

Underfull \hbox (badness 5274) in paragraph at lines 305--308
[]\T1/qtm/m/n/10 Set ini-tial risk for low-medium trans-mis-sion set-tings per:
 [][]$https : / / wiki . idmod . org / display / MAL /
[5]
Overfull \hbox (20.56392pt too wide) in paragraph at lines 413--413
\T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )|  
[6]
Overfull \hbox (35.49402pt too wide) in paragraph at lines 457--457
\T1/qtm/m/it/10 pop_filename_out=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 spatial_grid
ded_pop_dir\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , 
[7] [8] [9]
Underfull \hbox (badness 10000) in paragraph at lines 733--736
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 743--747
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Underfull \hbox (badness 10000) in paragraph at lines 743--747
\T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1
/txtt/m/n/10 [{ "BitingRisk":"High"},
[10]
Underfull \hbox (badness 10000) in paragraph at lines 878--881
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[11]
Underfull \hbox (badness 10000) in paragraph at lines 888--892
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Underfull \hbox (badness 10000) in paragraph at lines 888--892
\T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1
/txtt/m/n/10 [{ "BitingRisk":"High"},
[12]
Overfull \hbox (27.94388pt too wide) in paragraph at lines 985--985
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (8.55386pt too wide) in paragraph at lines 985--985
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (4.09389pt too wide) in paragraph at lines 985--985
\T1/qtm/m/it/10 out_on_first_occurrence: 
[13]
Underfull \hbox (badness 10000) in paragraph at lines 1026--1029
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 1036--1039
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[14]
Underfull \hbox (badness 10000) in paragraph at lines 1118--1121
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 1128--1131
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Overfull \hbox (31.3137pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 ger_condition_list: 

Overfull \hbox (29.93373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 graphic_coverage: 

Overfull \hbox (61.05371pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (9.43373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 get_age_min: 

Overfull \hbox (11.09373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 get_age_max: 

Overfull \hbox (2.46371pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 get_gender: 

Overfull \hbox (6.86372pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 tial_amount: 

Overfull \hbox (42.41373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 amount_in_shipment: 

Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , 

Overfull \hbox (59.27374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 days_between_shipments: 

Overfull \hbox (11.68375pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 3.40282e+38\T1/qtm/m/n/10 , 

Overfull \hbox (3.82375pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 tion_config: 

Overfull \hbox (1.05374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 tional[][][any] 

Overfull \hbox (60.84373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 max_distributed_per_day: 

Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , 

Overfull \hbox (0.53372pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 max_stock: 

Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , 

Overfull \hbox (2.71375pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 ing_period: 
[15]
Overfull \vbox (11.56755pt too high) has occurred while \output is active
[16]
Underfull \hbox (badness 10000) in paragraph at lines 1203--1206
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[17]
Underfull \hbox (badness 10000) in paragraph at lines 1315--1320
[]\T1/txtt/bx/n/10 diagnostic_type \T1/qtm/m/n/10 ^^U Type of malaria di-ag-nos
-tic used. De-fault is
[18]
Underfull \hbox (badness 10000) in paragraph at lines 1371--1375
[]\T1/qtm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure-

Underfull \hbox (badness 10000) in paragraph at lines 1399--1402
[]\T1/txtt/bx/n/10 measurement_sensitivity \T1/qtm/m/n/10 ^^U Set-ting for \T1/
qtm/b/n/10 Mea-sure-ment_Sensitivity \T1/qtm/m/n/10 in

Underfull \hbox (badness 10000) in paragraph at lines 1428--1434
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v
id-u-al-Prop-erty key:value

Underfull \hbox (badness 10000) in paragraph at lines 1428--1434
\T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t
ic in-ter-ven-

Underfull \hbox (badness 10000) in paragraph at lines 1428--1434
\T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr
opertyValue1"},

Underfull \hbox (badness 10000) in paragraph at lines 1436--1441
[]\T1/txtt/bx/n/10 disqualifying_properties \T1/qtm/m/n/10 ^^U List of In-di-vi
d-u-al-Prop-erty

Underfull \hbox (badness 10000) in paragraph at lines 1436--1441
\T1/qtm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For


Underfull \hbox (badness 10000) in paragraph at lines 1436--1441
\T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu
e1"},
[19]
Underfull \hbox (badness 10000) in paragraph at lines 1464--1468
[]\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 
[{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop-

Overfull \hbox (1.69395pt too wide) in paragraph at lines 1485--1485
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Underfull \hbox (badness 10000) in paragraph at lines 1516--1519
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[20]
Underfull \hbox (badness 10000) in paragraph at lines 1526--1529
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[21]
Overfull \hbox (72.89397pt too wide) in paragraph at lines 1650--1650
\T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received
_Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )|  
[22] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [23]
Overfull \hbox (25.23418pt too wide) in paragraph at lines 1874--1874
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (54.63417pt too wide) in paragraph at lines 1874--1874
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 


Overfull \hbox (30.48416pt too wide) in paragraph at lines 1891--1891
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (59.88416pt too wide) in paragraph at lines 1891--1891
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 

[24]
Overfull \hbox (30.48416pt too wide) in paragraph at lines 1908--1908
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (59.88416pt too wide) in paragraph at lines 1908--1908
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 


Underfull \hbox (badness 10000) in paragraph at lines 1909--1913
[]\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-
ven-tion to your cam-paign. See

Overfull \hbox (40.98413pt too wide) in paragraph at lines 1925--1925
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (70.38412pt too wide) in paragraph at lines 1925--1925
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 

[25]
Overfull \hbox (35.73415pt too wide) in paragraph at lines 1942--1942
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (65.13414pt too wide) in paragraph at lines 1942--1942
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 

[26] [27]
Overfull \hbox (26.20386pt too wide) in paragraph at lines 2099--2099
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (28.42386pt too wide) in paragraph at lines 2099--2099
\T1/qtm/m/it/10 pelling_decay_time_constant: 
[28]
Overfull \hbox (26.20386pt too wide) in paragraph at lines 2178--2178
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (28.42386pt too wide) in paragraph at lines 2178--2178
\T1/qtm/m/it/10 pelling_decay_time_constant: 
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 2384--2387
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 2394--2397
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[32] [33]
Underfull \hbox (badness 10000) in paragraph at lines 2497--2500
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[34]
Underfull \hbox (badness 10000) in paragraph at lines 2587--2590
[]\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^
PTEM-PO-RARY_RAINFALL^^Q, ^^PWA-

Underfull \hbox (badness 10000) in paragraph at lines 2587--2590
\T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P
BRACK-
[35]
Overfull \hbox (54.1938pt too wide) in paragraph at lines 2695--2695
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (1.7138pt too wide) in paragraph at lines 2695--2695
\T1/qtm/m/it/10 leased_infectious: 

Overfull \hbox (19.54382pt too wide) in paragraph at lines 2695--2695
\T1/qtm/m/it/10 leased_microsporidia: 
[36]
Underfull \hbox (badness 10000) in paragraph at lines 2716--2719
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 7576) in paragraph at lines 2732--2734
[]\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t
o re-lease, sets Re-leased_Type =

Underfull \hbox (badness 10000) in paragraph at lines 2743--2746
[]\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec-
tors re-leased that

Underfull \hbox (badness 10000) in paragraph at lines 2743--2746
\T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when

Overfull \hbox (16.29498pt too wide) in paragraph at lines 2743--2746
\T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI
CS' 
[37]
Underfull \hbox (badness 10000) in paragraph at lines 2839--2842
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 2849--2852
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[38]
Overfull \hbox (12.19392pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (14.34396pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 ate_nucleotide_sequence_from: 

Overfull \hbox (79.13393pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: 

Overfull \hbox (118.29388pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: 

Overfull \hbox (74.29391pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 hrp_allele_frequencies_per_genome_location: 
[39]
Underfull \hbox (badness 10000) in paragraph at lines 2935--2938
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 2945--2948
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Underfull \hbox (badness 10000) in paragraph at lines 2986--2992
[]\T1/txtt/bx/n/10 drug_resistant_string \T1/qtm/m/n/10 ^^U Used with `BAR-CODE
_STRING' or `NU-
[40]
Underfull \hbox (badness 10000) in paragraph at lines 3007--3013
[]\T1/txtt/bx/n/10 barcode_allele_frequencies_per_genome_location \T1/qtm/m/n/1
0 ^^U Used with `AL-

Underfull \hbox (badness 10000) in paragraph at lines 3023--3028
[]\T1/txtt/bx/n/10 hrp_allele_frequencies_per_genome_location \T1/qtm/m/n/10 ^^
U Used with `AL-

Overfull \hbox (17.44391pt too wide) in paragraph at lines 3049--3049
\T1/qtm/m/it/10 timesteps_between_repetitions: 
[41]
Underfull \hbox (badness 10000) in paragraph at lines 3082--3085
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 3092--3095
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[42]
Underfull \hbox (badness 10000) in paragraph at lines 3180--3183
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 3190--3193
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[43]
Overfull \hbox (59.44379pt too wide) in paragraph at lines 3280--3280
\T1/qtm/m/it/10 timesteps_between_repetitions: 
[44]
Overfull \hbox (69.94376pt too wide) in paragraph at lines 3357--3357
\T1/qtm/m/it/10 timesteps_between_repetitions: 
[45]
Underfull \hbox (badness 10000) in paragraph at lines 3391--3394
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Overfull \hbox (33.19386pt too wide) in paragraph at lines 3416--3416
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (26.16386pt too wide) in paragraph at lines 3416--3416
\T1/qtm/m/it/10 killing_decay_time_constant: 

Underfull \hbox (badness 10000) in paragraph at lines 3432--3435
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[46] [47]
Underfull \hbox (badness 10000) in paragraph at lines 3550--3553
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[48]
Overfull \hbox (5.13391pt too wide) in paragraph at lines 3652--3652
\T1/qtm/m/it/10 drug_ineligibility_duration: 
[49]
Underfull \hbox (badness 10000) in paragraph at lines 3672--3677
[]\T1/txtt/bx/n/10 is \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 properties of individual
s to target with the intervention.

Underfull \hbox (badness 6094) in paragraph at lines 3672--3677
\T1/txtt/m/sl/10 Default\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 [{ "trigger":"NewC
linicalCase","coverage":0.8,"agemin":15,

Underfull \hbox (badness 10000) in paragraph at lines 3672--3677
\T1/txtt/m/n/10 "agemax":70, "seek":0.4,"rate":0.3},{"trigger":"NewSevereCase",


Underfull \hbox (badness 10000) in paragraph at lines 3695--3697
[]\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h
ave to receive the

Underfull \hbox (badness 10000) in paragraph at lines 3695--3697
\T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi
dualProperty1:PropertyValue1",

Overfull \hbox (39.43362pt too wide) in paragraph at lines 3731--3731
[]\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , 

Overfull \hbox (38.10359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 start_day: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (10.26363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 de- 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 mo- 

Overfull \hbox (71.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 graphic_coverage: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (11.9936pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tar- 

Overfull \hbox (84.11362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 get_num_individuals: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (39.17361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]int[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (36.93362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 node_ids: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (103.05359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 in- 

Overfull \hbox (11.28362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ter- 

Overfull \hbox (14.40361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ven- 

Overfull \hbox (43.04362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tion_name: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (14.07361pt too wide) in paragraph at lines 3731--3731
\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- 

Overfull \hbox (26.47362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ageDe- 

Overfull \hbox (15.26363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pen- 

Overfull \hbox (33.59363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 dentBed- 

Overfull \hbox (14.20361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 dis- 

Overfull \hbox (48.29361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 card_config: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 in- 

Overfull \hbox (13.59363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 sec- 

Overfull \hbox (6.38362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ti- 

Overfull \hbox (17.48363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 cide: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.27359pt too wide) in paragraph at lines 3731--3731
\TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 re- 

Overfull \hbox (83.63359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pelling_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 re- 

Overfull \hbox (86.9436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pelling_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 re- 

Overfull \hbox (117.6336pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pelling_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.63359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (71.9436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (102.6336pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (14.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 730\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.60362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_linear_times: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (72.79362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_linear_values: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (75.51361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_expire_at_end: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (81.41359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 killing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (84.7236pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 killing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (115.4136pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (67.01363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 age_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (14.15363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 sea- 

Overfull \hbox (74.69363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 sonal_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (23.6036pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/txtt/m/n/10 )|  
[50]
Overfull \vbox (839.56755pt too high) has occurred while \output is active
[51]
Underfull \hbox (badness 6188) in paragraph at lines 3736--3741
[]\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect-
Ex-po-nen-tial

Underfull \hbox (badness 10000) in paragraph at lines 3771--3774
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[52] [53]
Overfull \hbox (39.43362pt too wide) in paragraph at lines 3934--3934
[]\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , 

Overfull \hbox (38.10359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 start_day: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (10.26363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 de- 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 mo- 

Overfull \hbox (71.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 graphic_coverage: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (36.93362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 node_ids: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (103.05359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 trig- 

Overfull \hbox (73.31358pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ger_condition_list: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 trig- 

Overfull \hbox (93.44359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 gered_campaign_delay: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (46.39362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]float[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (10.27362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 lis- 

Overfull \hbox (12.89363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ten- 

Overfull \hbox (52.80362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (0.82362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 - 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 in- 

Overfull \hbox (11.28362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ter- 

Overfull \hbox (14.40361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ven- 

Overfull \hbox (43.04362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tion_name: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (14.07361pt too wide) in paragraph at lines 3934--3934
\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- 

Overfull \hbox (26.47362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ageDe- 

Overfull \hbox (15.26363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pen- 

Overfull \hbox (33.59363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 dentBed- 

Overfull \hbox (14.20361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 dis- 

Overfull \hbox (48.29361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 card_config: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 in- 

Overfull \hbox (13.59363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 sec- 

Overfull \hbox (6.38362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ti- 

Overfull \hbox (17.48363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 cide: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.27359pt too wide) in paragraph at lines 3934--3934
\TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 re- 

Overfull \hbox (83.63359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pelling_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 re- 

Overfull \hbox (86.9436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pelling_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 re- 

Overfull \hbox (117.6336pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pelling_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.63359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (71.9436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (102.6336pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (14.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 730\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.60362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_linear_times: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (72.79362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_linear_values: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (75.51361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_expire_at_end: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (81.41359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 killing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (84.7236pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 killing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (115.4136pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (67.01363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 age_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (14.15363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 sea- 

Overfull \hbox (74.69363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 sonal_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (23.6036pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/txtt/m/n/10 )|  
[54]
Overfull \vbox (979.56999pt too high) has occurred while \output is active
[55]
Underfull \hbox (badness 6188) in paragraph at lines 3939--3945
[]\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect-
Ex-po-nen-tial

Underfull \hbox (badness 10000) in paragraph at lines 3970--3973
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[56] [57]
Overfull \hbox (88.19377pt too wide) in paragraph at lines 4147--4147
\T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso
n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )|  
[58]
Underfull \hbox (badness 10000) in paragraph at lines 4191--4194
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 4201--4204
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[59]
Underfull \hbox (badness 10000) in paragraph at lines 4304--4307
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 4314--4317
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[60] [61]
Overfull \hbox (31.91403pt too wide) in paragraph at lines 4485--4485
\T1/qtm/m/it/10 cific_genome_combinations_for_stratification: 
[62]
Underfull \hbox (badness 5119) in paragraph at lines 4535--4542
\T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_
GENOME^^Q spe-
[63] [64] [65]
Overfull \hbox (2.92401pt too wide) in paragraph at lines 4859--4859
\T1/qtm/m/it/10 clude_30day_avg_infection_duration: 
[66]
Overfull \hbox (6.20389pt too wide) in paragraph at lines 4932--4932
\T1/qtm/m/it/10 must_have_ip_key_value: 

Overfull \hbox (1.87387pt too wide) in paragraph at lines 4932--4932
\T1/qtm/m/it/10 must_have_intervention: 

Overfull \hbox (55.41386pt too wide) in paragraph at lines 4932--4932
\T1/qtm/m/it/10 clude_30day_avg_infection_duration: 
[67]
Underfull \hbox (badness 5119) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T
emperature^^Q, ^^PBirths^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite
_Prevalence^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^
^Q, ^^PDis-ease_Deaths^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga
metocyte_Prevalence^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u
-la-tion^^Q, ^^PPreva-

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr
evalence^^Q De-faults:
[68] [69] [70] [71] [72] [73]
Overfull \hbox (4.70392pt too wide) in paragraph at lines 5611--5611
\T1/qtm/m/it/10 ify_by_clinical_symptoms: 

Overfull \hbox (38.49373pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 drug_resistant_strings: 

Overfull \hbox (102.98372pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 drug_resistant_and_hrp_statistic_type: 

Overfull \hbox (156.42372pt too wide) in paragraph at lines 5657--5657
\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m
/it/10 '\T1/qtm/m/n/10 , 

Overfull \hbox (18.46376pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 ip_key_to_collect: 

Overfull \hbox (4.78375pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 ify_by_gender: 

Overfull \hbox (37.74379pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 clude_identity_by_xxx: 
[74] [75]
Overfull \hbox (5.15385pt too wide) in paragraph at lines 5763--5763
\T1/qtm/m/it/10 clude_microsporidia: 
[76]
Underfull \hbox (badness 7308) in paragraph at lines 5833--5835
[]\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or 
ex-clude, de-pend-ing on value of
[77] [78]
Underfull \hbox (badness 10000) in paragraph at lines 6040--6043
\T1/qtm/m/n/10 im-plies one should get data on days Start_Day, Start_Day+Sampli
ng_Period,
[79] [80]
Underfull \hbox (badness 10000) in paragraph at lines 6217--6223
[]\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma
lar-i-a-Trans-mis-sion.csv) is a csv re-

Underfull \hbox (badness 6592) in paragraph at lines 6217--6223
\T1/qtm/m/n/10 port that pro-vides data on malaria trans-mis-sion, by track-ing
 who trans-mit-ted malaria to whom.

Underfull \hbox (badness 10000) in paragraph at lines 6217--6223
\T1/qtm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram
-e-ter \T1/qtm/b/n/10 Malaria_Model \T1/qtm/m/n/10 is set to

Underfull \hbox (badness 5388) in paragraph at lines 6217--6223
\T1/qtm/m/n/10 MALARIA_MECHANISTIC_MODEL_WITH_CO_TRANSMISSION. This re-port is 
typ-i-cally used as
[81] [82] [83]
Overfull \hbox (3.4238pt too wide) in paragraph at lines 6581--6581
\T1/qtm/m/it/10 ing.Optional[str] 
[84] [85] [86] [87]
Overfull \hbox (21.45433pt too wide) in paragraph at lines 6890--6890
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 

Overfull \hbox (11.94434pt too wide) in paragraph at lines 6890--6890
\T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me
tadata.WeatherAttributes[][]\T1/qtm/m/it/10 ] 

Overfull \hbox (21.45433pt too wide) in paragraph at lines 6890--6890
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 

Overfull \hbox (21.45433pt too wide) in paragraph at lines 6949--6949
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 

Overfull \hbox (21.45433pt too wide) in paragraph at lines 6949--6949
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 
[88]
Overfull \hbox (5.21489pt too wide) in paragraph at lines 6981--6984
[]

Overfull \hbox (93.15411pt too wide) in paragraph at lines 7024--7024
\T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me
tadata.WeatherMetadata[][]\T1/qtm/m/it/10 ] 
[89] [90] [91] [92]
Overfull \hbox (162.35397pt too wide) in paragraph at lines 7464--7464
\T1/qtm/m/it/10 tional[][][[][]Union[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weat
her.weather_metadata.WeatherMetadata[][]\T1/qtm/m/it/10 , 

Overfull \hbox (109.32397pt too wide) in paragraph at lines 7464--7464
[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_metadata.WeatherAttributes[][
]\T1/qtm/m/it/10 , 
[93] [94]
Overfull \hbox (79.22398pt too wide) in paragraph at lines 7694--7694
\T1/qtm/m/it/10 tools_platform_comps.comps_platform.COMPSPlatform[][]]\T1/qtm/m
/n/10 , 
[95]
Overfull \hbox (94.95412pt too wide) in paragraph at lines 7817--7817
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 

Overfull \hbox (94.95412pt too wide) in paragraph at lines 7817--7817
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 
[96] [97]
Underfull \hbox (badness 10000) in paragraph at lines 8120--8124
[]\T1/qtm/m/n/10 For ex-am-ple, air

Underfull \hbox (badness 10000) in paragraph at lines 8120--8124
\T1/qtm/m/n/10 tem-per-a-ture could be rep-re-sented as: Weath-er-Vari-able.AIR
_TEMPERATURE:

Overfull \hbox (23.18442pt too wide) in paragraph at lines 8135--8135
\T1/qtm/m/it/10 tional[][][[][]List[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 ]] 

Overfull \hbox (20.21443pt too wide) in paragraph at lines 8135--8135
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 
[98]
Overfull \hbox (21.12492pt too wide) in paragraph at lines 8163--8166
[]

Underfull \hbox (badness 10000) in paragraph at lines 8163--8166
\T1/qtm/m/n/10 In this case low-er-case weather vari-able names are used, for e
x-am-ple:
[99] [100]
Underfull \hbox (badness 10000) in paragraph at lines 8451--8454
[]\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s
im-u-la-tions Malaria_Model =

Underfull \hbox (badness 6510) in paragraph at lines 8465--8467
[]\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u
es are ^^PFIXED_NEIGHBORHOOD^^Q,
[101]
Underfull \hbox (badness 10000) in paragraph at lines 8615--8619
\T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^
PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] =
[102]
Overfull \hbox (31.99455pt too wide) in paragraph at lines 8675--8678
[]\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Female_to_Male_Transmission_Probability

Overfull \hbox (24.19456pt too wide) in paragraph at lines 8680--8683
[]\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 
Mi-crosporidia_Female_To_Egg_Transmission_Probability

Overfull \hbox (34.43456pt too wide) in paragraph at lines 8685--8688
[]\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Male_To_Female_Transmission_Probability

Overfull \hbox (4.75461pt too wide) in paragraph at lines 8690--8694
[]\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi
-crosporidia_Male_To_Egg_Transmission_Probability

Underfull \hbox (badness 10000) in paragraph at lines 8696--8704
[]\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 
^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 8719--8727
[]\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10
 ^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 8719--8727
\T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm
/m/n/10 , A dic-tio-nary for
[103] [104] [105] [106] [107] [108] [109] [110]
Underfull \hbox (badness 10000) in paragraph at lines 9477--9481
\T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^
PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] =
[111]
Overfull \hbox (31.99455pt too wide) in paragraph at lines 9537--9540
[]\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Female_to_Male_Transmission_Probability

Overfull \hbox (24.19456pt too wide) in paragraph at lines 9542--9545
[]\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 
Mi-crosporidia_Female_To_Egg_Transmission_Probability

Overfull \hbox (34.43456pt too wide) in paragraph at lines 9547--9550
[]\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Male_To_Female_Transmission_Probability

Overfull \hbox (4.75461pt too wide) in paragraph at lines 9552--9556
[]\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi
-crosporidia_Male_To_Egg_Transmission_Probability

Underfull \hbox (badness 10000) in paragraph at lines 9558--9566
[]\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 
^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 9581--9589
[]\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10
 ^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 9581--9589
\T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm
/m/n/10 , A dic-tio-nary for
[112] [113] [114]
Chapter 3.
[115] [116] [117]
Overfull \hbox (15.08487pt too wide) in paragraph at lines 9851--9853
\T1/qtm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/<userna
me>@idmod.org:<shh...password>@packages.idmod.org/api/pypi/pypi-
[118] [119] [120] [121] [122] [123] [124]
Overfull \hbox (19.37178pt too wide) in paragraph at lines 10200--10201
[]\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10
 ,

Overfull \hbox (45.6217pt too wide) in paragraph at lines 10205--10206
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m
/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 10208--10209
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ,

Overfull \hbox (14.1218pt too wide) in paragraph at lines 10213--10214
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.malaria_challenge\T1/qtm/m/n/10 
,

Overfull \hbox (3.62183pt too wide) in paragraph at lines 10214--10215
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ,

Overfull \hbox (3.62183pt too wide) in paragraph at lines 10216--10217
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 ,

Overfull \hbox (35.12173pt too wide) in paragraph at lines 10217--10218
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n
/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 10218--10219
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ,

Overfull \hbox (14.1218pt too wide) in paragraph at lines 10220--10221
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 
,

Overfull \hbox (40.37172pt too wide) in paragraph at lines 10221--10222
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/
n/10 ,

Overfull \hbox (3.62183pt too wide) in paragraph at lines 10224--10225
[]\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 ,
[125] (./institute-for-disease-modeling-emodpy-malaria.ind [126]
Underfull \hbox (badness 10000) in paragraph at lines 8--10
[]\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 8--10
\T1/qtm/m/it/10 emodpy_malaria.interventions.common\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 10--12
[]\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 10--12
\T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/txtt/m/n/10 add_challenge_trial() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-
ule

Overfull \hbox (15.59247pt too wide) in paragraph at lines 12--14
\T1/qtm/m/it/10 emodpy_malaria.interventions.malaria_challenge\T1/qtm/m/n/10 ),


Underfull \hbox (badness 10000) in paragraph at lines 14--16
[]\T1/txtt/m/n/10 add_community_health_worker() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Overfull \hbox (47.96248pt too wide) in paragraph at lines 14--16
\T1/qtm/m/it/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m/n
/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 16--18
[]\T1/txtt/m/n/10 add_diagnostic_survey() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Underfull \hbox (badness 10000) in paragraph at lines 16--18
\T1/qtm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 18--20
[]\T1/txtt/m/n/10 add_drug_campaign() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Overfull \hbox (4.22249pt too wide) in paragraph at lines 18--20
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 20--22
[]\T1/txtt/m/n/10 add_drug_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-
ule

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/txtt/m/n/10 add_drug_status_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m
od-ule

Underfull \hbox (badness 10000) in paragraph at lines 24--26
[]\T1/txtt/m/n/10 add_event_recorder() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 26--28
[]\T1/txtt/m/n/10 add_fMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 26--28
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 28--30
[]\T1/txtt/m/n/10 add_genes_and_alleles() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Underfull \hbox (badness 10000) in paragraph at lines 30--32
[]\T1/txtt/m/n/10 add_habitat_reduction_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Overfull \hbox (27.56747pt too wide) in paragraph at lines 30--32
\T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1
0 ),

Underfull \hbox (badness 10000) in paragraph at lines 32--34
[]\T1/txtt/m/n/10 add_human_migration_tracking() \T1/qtm/m/n/10 (\T1/qtm/m/it/1
0 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 34--36
[]\T1/txtt/m/n/10 add_initial_vectors_per_species()

Overfull \hbox (127.35252pt too wide) in paragraph at lines 34--36
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics
.MalariaDemographics

Underfull \hbox (badness 10000) in paragraph at lines 36--38
[]\T1/txtt/m/n/10 add_initial_vectors_per_species_from_csv()

Overfull \hbox (127.35252pt too wide) in paragraph at lines 36--38
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics
.MalariaDemographics

Underfull \hbox (badness 10000) in paragraph at lines 38--40
[]\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 40--42
[]\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 42--44
[]\T1/txtt/m/n/10 add_itn_scheduled() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 44--46
[]\T1/txtt/m/n/10 add_itn_triggered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 46--48
[]\T1/txtt/m/n/10 add_larval_habitat_multiplier()

Overfull \hbox (127.35252pt too wide) in paragraph at lines 46--48
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics
.MalariaDemographics

Underfull \hbox (badness 10000) in paragraph at lines 48--50
[]\T1/txtt/m/n/10 add_larvicide() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 48--50
\T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 52--54
[]\T1/txtt/m/n/10 add_malaria_immunity_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 54--56
[]\T1/txtt/m/n/10 add_malaria_patient_json_report() \T1/qtm/m/n/10 (\T1/qtm/m/i
t/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 56--58
[]\T1/txtt/m/n/10 add_malaria_summary_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 58--60
[]\T1/txtt/m/n/10 add_malaria_survey_analyzer() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 60--62
[]\T1/txtt/m/n/10 add_MDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 60--62
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 62--64
[]\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 64--66
[]\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 66--68
[]\T1/txtt/m/n/10 add_MSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 66--68
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 68--70
[]\T1/txtt/m/n/10 add_mutation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 70--72
[]\T1/txtt/m/n/10 add_outbreak_individual() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 70--72
\T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 72--74
[]\T1/txtt/m/n/10 add_outbreak_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/
10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 74--76
[]\T1/txtt/m/n/10 add_outbreak_malaria_var_genes() \T1/qtm/m/n/10 (\T1/qtm/m/it
/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 76--78
[]\T1/txtt/m/n/10 add_outdoorrestkill() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-
ule
[127]
Underfull \hbox (badness 10000) in paragraph at lines 78--80
[]\T1/txtt/m/n/10 add_report_event_counter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 80--82
[]\T1/txtt/m/n/10 add_report_fpg_output() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Underfull \hbox (badness 10000) in paragraph at lines 84--86
[]\T1/txtt/m/n/10 add_report_intervention_pop_avg() \T1/qtm/m/n/10 (\T1/qtm/m/i
t/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 86--88
[]\T1/txtt/m/n/10 add_report_malaria_filtered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 88--90
[]\T1/txtt/m/n/10 add_report_malaria_filtered_intrahost() \T1/qtm/m/n/10 (\T1/q
tm/m/it/10 in

Underfull \hbox (badness 10000) in paragraph at lines 90--92
[]\T1/txtt/m/n/10 add_report_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 92--94
[]\T1/txtt/m/n/10 add_report_node_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/1
0 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 94--96
[]\T1/txtt/m/n/10 add_report_node_demographics_malaria() \T1/qtm/m/n/10 (\T1/qt
m/m/it/10 in

Overfull \hbox (16.87178pt too wide) in paragraph at lines 96--98
[]\T1/txtt/m/n/10 add_report_node_demographics_malaria_genetics()

Underfull \hbox (badness 10000) in paragraph at lines 98--100
[]\T1/txtt/m/n/10 add_report_simulation_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 100--102
[]\T1/txtt/m/n/10 add_report_vector_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 102--104
[]\T1/txtt/m/n/10 add_report_vector_migration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 104--106
[]\T1/txtt/m/n/10 add_report_vector_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 106--108
[]\T1/txtt/m/n/10 add_report_vector_stats_malaria_genetics()

Underfull \hbox (badness 10000) in paragraph at lines 108--110
[]\T1/txtt/m/n/10 add_rfMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 108--110
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 110--112
[]\T1/txtt/m/n/10 add_rfMSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 110--112
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 112--114
[]\T1/txtt/m/n/10 add_scale_larval_habitats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i
n mod-ule

Overfull \hbox (27.56747pt too wide) in paragraph at lines 112--114
\T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1
0 ),

Underfull \hbox (badness 10000) in paragraph at lines 114--116
[]\T1/txtt/m/n/10 add_scheduled_antimalarial_drug() \T1/qtm/m/n/10 (\T1/qtm/m/i
t/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 116--118
[]\T1/txtt/m/n/10 add_scheduled_input_eir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 116--118
\T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 118--120
[]\T1/txtt/m/n/10 add_scheduled_irs_housing_modification() \T1/qtm/m/n/10 (\T1/
qtm/m/it/10 in

Underfull \hbox (badness 10000) in paragraph at lines 120--122
[]\T1/txtt/m/n/10 add_scheduled_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 120--122
\T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 122--124
[]\T1/txtt/m/n/10 add_scheduled_mosquito_release() \T1/qtm/m/n/10 (\T1/qtm/m/it
/10 in mod-ule

Overfull \hbox (5.84247pt too wide) in paragraph at lines 122--124
\T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 124--126
[]\T1/txtt/m/n/10 add_scheduled_space_spraying() \T1/qtm/m/n/10 (\T1/qtm/m/it/1
0 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 124--126
\T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 126--128
[]\T1/txtt/m/n/10 add_scheduled_sugar_trap() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 126--128
\T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 128--130
[]\T1/txtt/m/n/10 add_scheduled_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt
m/m/it/10 in

Overfull \hbox (72.8525pt too wide) in paragraph at lines 128--130
\T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/
qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 130--132
[]\T1/txtt/m/n/10 add_scheduled_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Underfull \hbox (badness 10000) in paragraph at lines 130--132
\T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 134--136
[]\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 136--138
[]\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 138--140
[]\T1/txtt/m/n/10 add_species_drivers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-
ule

Underfull \hbox (badness 10000) in paragraph at lines 140--142
[]\T1/txtt/m/n/10 add_sql_report_malaria() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m
od-ule

Underfull \hbox (badness 10000) in paragraph at lines 142--144
[]\T1/txtt/m/n/10 add_sql_report_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/i
t/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 144--145
[]\T1/txtt/m/n/10 add_trait() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 145--147
[]\T1/txtt/m/n/10 add_treatment_seeking() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Overfull \hbox (13.81248pt too wide) in paragraph at lines 145--147
\T1/qtm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 ),


Underfull \hbox (badness 10000) in paragraph at lines 147--149
\T1/qtm/m/it/10 ule emodpy_malaria.interventions.common\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 149--151
[]\T1/txtt/m/n/10 add_triggered_irs_housing_modification() \T1/qtm/m/n/10 (\T1/
qtm/m/it/10 in

Underfull \hbox (badness 10000) in paragraph at lines 151--153
[]\T1/txtt/m/n/10 add_triggered_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 151--153
\T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 153--155
[]\T1/txtt/m/n/10 add_triggered_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt
m/m/it/10 in

Overfull \hbox (72.8525pt too wide) in paragraph at lines 153--155
\T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/
qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 155--157
[]\T1/txtt/m/n/10 add_triggered_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Underfull \hbox (badness 10000) in paragraph at lines 155--157
\T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 157--159
[]\T1/txtt/m/n/10 add_vector_habitat_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i
n mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 159--161
[]\T1/txtt/m/n/10 add_visualizations() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 161--163
[]\T1/txtt/m/n/10 adherent_drug() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 161--163
\T1/qtm/m/it/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 ),

Overfull \hbox (97.69139pt too wide) in paragraph at lines 163--165
[]\T1/txtt/m/n/10 AIR_TEMPERATURE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.weather.weather_variable.WeatherVariable
[128]
Underfull \hbox (badness 10000) in paragraph at lines 165--167
[]\T1/txtt/m/n/10 all_vectors_if_none() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-
ule

Overfull \hbox (79.26231pt too wide) in paragraph at lines 167--169
[]\T1/txtt/m/n/10 attributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherMetadata

Overfull \hbox (27.04231pt too wide) in paragraph at lines 169--171
[]\T1/txtt/m/n/10 attributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_set.WeatherSet

Overfull \hbox (106.63223pt too wide) in paragraph at lines 171--173
[]\T1/txtt/m/n/10 attributes_dict \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.weather.weather_metadata.WeatherAttributes

Overfull \hbox (59.38237pt too wide) in paragraph at lines 173--175
[]\T1/txtt/m/n/10 author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather
.weather_metadata.WeatherAttributes

Underfull \hbox (badness 10000) in paragraph at lines 178--180
[]\T1/txtt/m/n/10 check_vectors() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (52.95236pt too wide) in paragraph at lines 180--182
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.MalariaImmunityReport

Overfull \hbox (66.65236pt too wide) in paragraph at lines 182--184
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.MalariaPatientJSONReport

Overfull \hbox (53.25237pt too wide) in paragraph at lines 184--186
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.MalariaSummaryReport

Overfull \hbox (73.90236pt too wide) in paragraph at lines 186--188
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.MalariaSurveyJSONAnalyzer

Overfull \hbox (27.91235pt too wide) in paragraph at lines 188--190
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportDrugStatus

Overfull \hbox (37.50235pt too wide) in paragraph at lines 190--192
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportEventCounter

Overfull \hbox (123.31236pt too wide) in paragraph at lines 192--194
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportFpgOutputForObservationalModel

Overfull \hbox (86.26233pt too wide) in paragraph at lines 194--196
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportHumanMigrationTracking

Overfull \hbox (69.73235pt too wide) in paragraph at lines 196--198
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportInfectionStatsMalaria

Overfull \hbox (61.24232pt too wide) in paragraph at lines 198--200
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportInterventionPopAvg

Overfull \hbox (46.60233pt too wide) in paragraph at lines 200--202
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportMalariaFiltered

Overfull \hbox (85.14232pt too wide) in paragraph at lines 202--204
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportMalariaFilteredIntraHost

Overfull \hbox (39.93236pt too wide) in paragraph at lines 204--206
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportMicrosporidia

Overfull \hbox (61.69237pt too wide) in paragraph at lines 206--208
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportNodeDemographics

Overfull \hbox (94.47237pt too wide) in paragraph at lines 208--210
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportNodeDemographicsMalaria

Overfull \hbox (129.31238pt too wide) in paragraph at lines 210--212
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportNodeDemographicsMalariaGenetics

Overfull \hbox (95.20233pt too wide) in paragraph at lines 212--214
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportSimpleMalariaTransmission

Overfull \hbox (45.04236pt too wide) in paragraph at lines 214--216
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportSimulationStats

Overfull \hbox (43.05237pt too wide) in paragraph at lines 216--218
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportVectorGenetics

Overfull \hbox (48.32236pt too wide) in paragraph at lines 218--220
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportVectorMigration

Overfull \hbox (27.51236pt too wide) in paragraph at lines 220--222
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportVectorStats

Overfull \hbox (95.13237pt too wide) in paragraph at lines 222--224
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportVectorStatsMalariaGenetics

Overfull \hbox (74.94232pt too wide) in paragraph at lines 224--226
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.SpatialReportMalariaFiltered

Overfull \hbox (27.96236pt too wide) in paragraph at lines 226--228
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.SqlReportMalaria

Overfull \hbox (62.80237pt too wide) in paragraph at lines 228--230
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.SqlReportMalariaGenetics

Overfull \hbox (38.77235pt too wide) in paragraph at lines 230--232
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.VectorHabitatReport

Underfull \hbox (badness 10000) in paragraph at lines 232--234
[]\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 234--236
[]\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 236--237
[]\T1/txtt/m/n/10 csv_to_weather() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (10.29239pt too wide) in paragraph at lines 240--242
[]\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w
eather_data.WeatherData

Overfull \hbox (48.51231pt too wide) in paragraph at lines 242--244
[]\T1/txtt/m/n/10 data_id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weathe
r.weather_request.WeatherRequest

Overfull \hbox (80.38231pt too wide) in paragraph at lines 244--246
[]\T1/txtt/m/n/10 data_years \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherAttributes

Underfull \hbox (badness 10000) in paragraph at lines 246--248
[]\T1/txtt/m/n/10 DataFrameInfo \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 246--248
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_data\T1/qtm/m/n/10 ),

Overfull \hbox (34.68227pt too wide) in paragraph at lines 248--250
[]\T1/txtt/m/n/10 DataSource \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emodpy_ma
laria.weather.weather_request\T1/qtm/m/n/10 ),

Overfull \hbox (105.51224pt too wide) in paragraph at lines 250--252
[]\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.weather.weather_metadata.WeatherMetadata

Overfull \hbox (90.88228pt too wide) in paragraph at lines 252--254
[]\T1/txtt/m/n/10 date_created \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_metadata.WeatherAttributes

Overfull \hbox (81.83218pt too wide) in paragraph at lines 254--256
[]\T1/txtt/m/n/10 detect_columns() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar
ia.weather.weather_data.DataFrameInfo

Overfull \hbox (16.54234pt too wide) in paragraph at lines 256--258
[]\T1/txtt/m/n/10 dir_path \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_set.WeatherSet

Overfull \hbox (47.7523pt too wide) in paragraph at lines 258--260
[]\T1/txtt/m/n/10 download \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_request.RequestReport

Overfull \hbox (64.26227pt too wide) in paragraph at lines 260--262
[]\T1/txtt/m/n/10 download() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_request.WeatherRequest

Underfull \hbox (badness 10000) in paragraph at lines 262--264
[]\T1/txtt/m/n/10 drug_configs_from_code() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m
od-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 262--264
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Overfull \hbox (16.87178pt too wide) in paragraph at lines 271--272
[]\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics 
[129]
Overfull \hbox (43.1217pt too wide) in paragraph at lines 281--282
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker 

Overfull \hbox (11.6218pt too wide) in paragraph at lines 297--298
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.malaria_challenge 

Overfull \hbox (1.12183pt too wide) in paragraph at lines 299--300
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease 

Overfull \hbox (1.12183pt too wide) in paragraph at lines 303--304
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill 

Overfull \hbox (32.62173pt too wide) in paragraph at lines 305--306
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats 

Overfull \hbox (11.6218pt too wide) in paragraph at lines 311--312
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking 

Overfull \hbox (37.87172pt too wide) in paragraph at lines 313--314
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet 

Overfull \hbox (1.12183pt too wide) in paragraph at lines 319--320
[]\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params 

Overfull \hbox (27.04231pt too wide) in paragraph at lines 346--348
[]\T1/txtt/m/n/10 file_names \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_set.WeatherSet

Overfull \hbox (52.54227pt too wide) in paragraph at lines 348--350
[]\T1/txtt/m/n/10 file_prefix \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_request.DataSource

Overfull \hbox (38.01234pt too wide) in paragraph at lines 350--352
[]\T1/txtt/m/n/10 files \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.
weather_request.WeatherRequest

Overfull \hbox (69.51225pt too wide) in paragraph at lines 352--354
[]\T1/txtt/m/n/10 files_exist \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_request.WeatherRequest

Underfull \hbox (badness 10000) in paragraph at lines 354--356
[]\T1/txtt/m/n/10 fmda_cfg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 354--356
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 356--358
[]\T1/txtt/m/n/10 format_create_date()

Overfull \hbox (66.21246pt too wide) in paragraph at lines 356--358
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather
Attributes

Overfull \hbox (41.7923pt too wide) in paragraph at lines 358--360
[]\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_data.WeatherData

Overfull \hbox (27.04231pt too wide) in paragraph at lines 360--362
[]\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 362--364
[]\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (36.1975pt too wide) in paragraph at lines 362--364
\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 )
,

Overfull \hbox (73.2922pt too wide) in paragraph at lines 364--366
[]\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar
ia.weather.weather_data.WeatherData

Overfull \hbox (58.54222pt too wide) in paragraph at lines 366--368
[]\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar
ia.weather.weather_set.WeatherSet

Overfull \hbox (47.04228pt too wide) in paragraph at lines 368--370
[]\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_data.WeatherData

Overfull \hbox (47.04228pt too wide) in paragraph at lines 370--372
[]\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_data.WeatherData

Overfull \hbox (84.5123pt too wide) in paragraph at lines 372--374
[]\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_metadata.WeatherMetadata

Overfull \hbox (37.54228pt too wide) in paragraph at lines 374--376
[]\T1/txtt/m/n/10 from_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 376--378
[]\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (36.1975pt too wide) in paragraph at lines 376--378
\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 )
,
[130]
Underfull \hbox (badness 10000) in paragraph at lines 378--380
[]\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (36.1975pt too wide) in paragraph at lines 378--380
\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 )
,

Underfull \hbox (badness 10000) in paragraph at lines 380--382
[]\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Overfull \hbox (36.1975pt too wide) in paragraph at lines 380--382
\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 )
,

Overfull \hbox (64.26227pt too wide) in paragraph at lines 385--387
[]\T1/txtt/m/n/10 generate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_request.WeatherRequest

Underfull \hbox (badness 10000) in paragraph at lines 387--388
[]\T1/txtt/m/n/10 generate_weather() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule


Underfull \hbox (badness 10000) in paragraph at lines 388--390
[]\T1/txtt/m/n/10 get_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 390--392
[]\T1/txtt/m/n/10 get_file_from_http() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 392--394
[]\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 394--396
[]\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 399--401
[]\T1/txtt/m/n/10 hash_series() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 399--401
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Overfull \hbox (90.88228pt too wide) in paragraph at lines 404--406
[]\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_metadata.WeatherAttributes

Underfull \hbox (badness 10000) in paragraph at lines 406--408
[]\T1/txtt/m/n/10 invert_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 406--408
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 408--410
[]\T1/txtt/m/n/10 irs_configuration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Overfull \hbox (11.29236pt too wide) in paragraph at lines 410--412
[]\T1/txtt/m/n/10 items() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weathe
r.weather_set.WeatherSet

Overfull \hbox (6.04237pt too wide) in paragraph at lines 415--417
[]\T1/txtt/m/n/10 keys() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather
.weather_set.WeatherSet

Overfull \hbox (102.94138pt too wide) in paragraph at lines 420--422
[]\T1/txtt/m/n/10 LAND_TEMPERATURE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar
ia.weather.weather_variable.WeatherVariable

Overfull \hbox (50.44235pt too wide) in paragraph at lines 422--424
[]\T1/txtt/m/n/10 list() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather
.weather_variable.WeatherVariable

Overfull \hbox (59.01228pt too wide) in paragraph at lines 424--426
[]\T1/txtt/m/n/10 local_dir \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat
her.weather_request.WeatherRequest

Overfull \hbox (63.7922pt too wide) in paragraph at lines 429--431
[]\T1/txtt/m/n/10 make_file_paths() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 431--433
[]\T1/txtt/m/n/10 make_path() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 431--433
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 433--435
[]\T1/txtt/m/n/10 MalariaDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Overfull \hbox (36.1975pt too wide) in paragraph at lines 433--435
\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 )
,

Underfull \hbox (badness 10000) in paragraph at lines 435--437
[]\T1/txtt/m/n/10 MalariaImmunityReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i
n

Underfull \hbox (badness 10000) in paragraph at lines 437--439
[]\T1/txtt/m/n/10 MalariaPatientJSONReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas
s in

Underfull \hbox (badness 10000) in paragraph at lines 439--441
[]\T1/txtt/m/n/10 MalariaSummaryReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in


Underfull \hbox (badness 10000) in paragraph at lines 441--443
[]\T1/txtt/m/n/10 MalariaSurveyJSONAnalyzer \T1/qtm/m/n/10 (\T1/qtm/m/it/10 cla
ss in

Overfull \hbox (31.29233pt too wide) in paragraph at lines 443--445
[]\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_data.WeatherData

Underfull \hbox (badness 10000) in paragraph at lines 445--447
[]\T1/txtt/m/n/10 metadata_defaults_dict()

Overfull \hbox (66.21246pt too wide) in paragraph at lines 445--447
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather
Attributes

Overfull \hbox (39.37178pt too wide) in paragraph at lines 450--451
[]| \T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/
10 ,

Overfull \hbox (7.87187pt too wide) in paragraph at lines 452--453
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 ,

Overfull \hbox (65.6217pt too wide) in paragraph at lines 455--456
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm
/m/n/10 ,

Overfull \hbox (2.62189pt too wide) in paragraph at lines 456--457
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 ,

Overfull \hbox (13.12186pt too wide) in paragraph at lines 458--459
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 461--462
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 462--463
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ,

Overfull \hbox (34.1218pt too wide) in paragraph at lines 463--464
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.malaria_challenge\T1/qtm/m/n/1
0 ,

Overfull \hbox (23.62183pt too wide) in paragraph at lines 464--465
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 
,

Overfull \hbox (23.62183pt too wide) in paragraph at lines 466--467
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 
,

Overfull \hbox (55.12173pt too wide) in paragraph at lines 467--468
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m
/n/10 ,

Overfull \hbox (13.12186pt too wide) in paragraph at lines 468--469
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ,
[131]
Underfull \hbox (badness 10000) in paragraph at lines 469--470
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ,

Overfull \hbox (34.1218pt too wide) in paragraph at lines 470--471
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/1
0 ,

Overfull \hbox (60.37172pt too wide) in paragraph at lines 471--472
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/
m/n/10 ,

Overfull \hbox (23.62183pt too wide) in paragraph at lines 474--475
[]| \T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 
,

Underfull \hbox (badness 10000) in paragraph at lines 481--482
[]| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 482--483
[]| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_request\T1/qtm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 485--486
[]| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_variable\T1/qtm/m/n/10 ,

Overfull \hbox (15.79237pt too wide) in paragraph at lines 489--491
[]\T1/txtt/m/n/10 name \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w
eather_request.DataSource

Underfull \hbox (badness 10000) in paragraph at lines 491--493
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 493--495
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 495--497
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 495--497
\T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 497--499
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 499--501
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 499--501
\T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 501--503
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Overfull \hbox (5.84247pt too wide) in paragraph at lines 501--503
\T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 503--505
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 503--505
\T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 505--507
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 505--507
\T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 507--509
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Overfull \hbox (41.7425pt too wide) in paragraph at lines 507--509
\T1/qtm/m/it/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/n/
10 ),

Underfull \hbox (badness 10000) in paragraph at lines 509--511
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 509--511
\T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ),

Overfull \hbox (55.58226pt too wide) in paragraph at lines 511--513
[]\T1/txtt/m/n/10 node_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_data.DataFrameInfo

Overfull \hbox (79.26231pt too wide) in paragraph at lines 513--515
[]\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherMetadata

Overfull \hbox (105.51224pt too wide) in paragraph at lines 515--517
[]\T1/txtt/m/n/10 node_offset_str \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.weather.weather_metadata.WeatherMetadata

Overfull \hbox (89.76228pt too wide) in paragraph at lines 517--519
[]\T1/txtt/m/n/10 node_offsets \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_metadata.WeatherMetadata

Overfull \hbox (53.01239pt too wide) in paragraph at lines 519--521
[]\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.
weather_metadata.WeatherMetadata

Overfull \hbox (89.76228pt too wide) in paragraph at lines 524--526
[]\T1/txtt/m/n/10 offset_nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_metadata.WeatherMetadata

Overfull \hbox (63.45233pt too wide) in paragraph at lines 529--531
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.MalariaImmunityReport

Overfull \hbox (77.15233pt too wide) in paragraph at lines 531--533
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.MalariaPatientJSONReport

Overfull \hbox (63.75233pt too wide) in paragraph at lines 533--535
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.MalariaSummaryReport

Overfull \hbox (84.40233pt too wide) in paragraph at lines 535--537
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.MalariaSurveyJSONAnalyzer

Overfull \hbox (38.41232pt too wide) in paragraph at lines 537--539
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportDrugStatus

Overfull \hbox (48.00232pt too wide) in paragraph at lines 539--541
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportEventCounter

Overfull \hbox (133.81233pt too wide) in paragraph at lines 541--543
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportFpgOutputForObservationalModel

Overfull \hbox (96.7623pt too wide) in paragraph at lines 543--545
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportHumanMigrationTracking

Overfull \hbox (80.23232pt too wide) in paragraph at lines 545--547
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportInfectionStatsMalaria

Overfull \hbox (71.7423pt too wide) in paragraph at lines 547--549
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportInterventionPopAvg

Overfull \hbox (57.1023pt too wide) in paragraph at lines 549--551
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportMalariaFiltered

Overfull \hbox (95.64229pt too wide) in paragraph at lines 551--553
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportMalariaFilteredIntraHost

Overfull \hbox (50.43233pt too wide) in paragraph at lines 553--555
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportMicrosporidia

Overfull \hbox (72.19234pt too wide) in paragraph at lines 555--557
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportNodeDemographics

Overfull \hbox (104.97234pt too wide) in paragraph at lines 557--559
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportNodeDemographicsMalaria

Overfull \hbox (139.81235pt too wide) in paragraph at lines 559--561
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportNodeDemographicsMalariaGenetics

Overfull \hbox (105.7023pt too wide) in paragraph at lines 561--563
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportSimpleMalariaTransmission

Overfull \hbox (55.54233pt too wide) in paragraph at lines 563--565
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportSimulationStats
[132]
Overfull \hbox (53.55234pt too wide) in paragraph at lines 565--567
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportVectorGenetics

Overfull \hbox (58.82233pt too wide) in paragraph at lines 567--569
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportVectorMigration

Overfull \hbox (38.01233pt too wide) in paragraph at lines 569--571
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportVectorStats

Overfull \hbox (105.63234pt too wide) in paragraph at lines 571--573
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportVectorStatsMalariaGenetics

Overfull \hbox (85.44229pt too wide) in paragraph at lines 573--575
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.SpatialReportMalariaFiltered

Overfull \hbox (38.46233pt too wide) in paragraph at lines 575--577
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.SqlReportMalaria

Overfull \hbox (73.30234pt too wide) in paragraph at lines 577--579
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.SqlReportMalariaGenetics

Overfull \hbox (49.27232pt too wide) in paragraph at lines 579--581
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.VectorHabitatReport

Underfull \hbox (badness 10000) in paragraph at lines 581--583
[]\T1/txtt/m/n/10 parse_date() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 581--583
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Overfull \hbox (80.38231pt too wide) in paragraph at lines 583--585
[]\T1/txtt/m/n/10 provenance \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherAttributes

Overfull \hbox (60.9415pt too wide) in paragraph at lines 588--590
[]\T1/txtt/m/n/10 RAINFALL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable

Overfull \hbox (108.19136pt too wide) in paragraph at lines 590--592
[]\T1/txtt/m/n/10 RELATIVE_HUMIDITY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_variable.WeatherVariable

Overfull \hbox (43.26233pt too wide) in paragraph at lines 592--594
[]\T1/txtt/m/n/10 report \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather
.weather_request.WeatherRequest

Underfull \hbox (badness 10000) in paragraph at lines 594--596
[]\T1/txtt/m/n/10 ReportDrugStatus \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 596--598
[]\T1/txtt/m/n/10 ReportEventCounter \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 600--602
[]\T1/txtt/m/n/10 ReportHumanMigrationTracking \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
class in

Underfull \hbox (badness 10000) in paragraph at lines 602--604
[]\T1/txtt/m/n/10 ReportInfectionStatsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 c
lass in

Underfull \hbox (badness 10000) in paragraph at lines 604--606
[]\T1/txtt/m/n/10 ReportInterventionPopAvg \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas
s in

Underfull \hbox (badness 10000) in paragraph at lines 606--608
[]\T1/txtt/m/n/10 ReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i
n

Underfull \hbox (badness 10000) in paragraph at lines 608--610
[]\T1/txtt/m/n/10 ReportMalariaFilteredIntraHost \T1/qtm/m/n/10 (\T1/qtm/m/it/1
0 class in

Underfull \hbox (badness 10000) in paragraph at lines 610--612
[]\T1/txtt/m/n/10 ReportMicrosporidia \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 612--614
[]\T1/txtt/m/n/10 ReportNodeDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class 
in

Underfull \hbox (badness 10000) in paragraph at lines 614--616
[]\T1/txtt/m/n/10 ReportNodeDemographicsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 class in

Underfull \hbox (badness 10000) in paragraph at lines 618--620
[]\T1/txtt/m/n/10 ReportSimpleMalariaTransmission \T1/qtm/m/n/10 (\T1/qtm/m/it/
10 class in

Underfull \hbox (badness 10000) in paragraph at lines 620--622
[]\T1/txtt/m/n/10 ReportSimulationStats \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i
n

Underfull \hbox (badness 10000) in paragraph at lines 622--624
[]\T1/txtt/m/n/10 ReportVectorGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in


Underfull \hbox (badness 10000) in paragraph at lines 624--626
[]\T1/txtt/m/n/10 ReportVectorMigration \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i
n

Underfull \hbox (badness 10000) in paragraph at lines 626--628
[]\T1/txtt/m/n/10 ReportVectorStats \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 628--630
[]\T1/txtt/m/n/10 ReportVectorStatsMalariaGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it
/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 630--632
[]\T1/txtt/m/n/10 RequestReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 632--634
[]\T1/txtt/m/n/10 required_metadata_defaults_dict()

Overfull \hbox (66.21246pt too wide) in paragraph at lines 632--634
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather
Attributes

Underfull \hbox (badness 10000) in paragraph at lines 637--639
[]\T1/txtt/m/n/10 save_json() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 637--639
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 639--641
[]\T1/txtt/m/n/10 select_weather_files()

Overfull \hbox (12.87247pt too wide) in paragraph at lines 639--641
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_set.WeatherSet

Overfull \hbox (89.76228pt too wide) in paragraph at lines 641--643
[]\T1/txtt/m/n/10 series_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_metadata.WeatherMetadata

Overfull \hbox (79.26231pt too wide) in paragraph at lines 643--645
[]\T1/txtt/m/n/10 series_len \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherMetadata

Underfull \hbox (badness 10000) in paragraph at lines 645--647
[]\T1/txtt/m/n/10 series_unique_count

Overfull \hbox (65.09247pt too wide) in paragraph at lines 645--647
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather
Metadata

Underfull \hbox (badness 10000) in paragraph at lines 647--649
[]\T1/txtt/m/n/10 set_drug_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 649--651
[]\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 651--653
[]\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 653--655
[]\T1/txtt/m/n/10 set_parasite_genetics_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/1
0 in mod-ule

Overfull \hbox (167.7723pt too wide) in paragraph at lines 655--657
[]\T1/txtt/m/n/10 set_risk_high() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.demographics.MalariaDemographics.MalariaDemographics

Underfull \hbox (badness 10000) in paragraph at lines 657--659
[]\T1/txtt/m/n/10 set_risk_lowmedium()

Overfull \hbox (127.35252pt too wide) in paragraph at lines 657--659
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics
.MalariaDemographics

Underfull \hbox (badness 10000) in paragraph at lines 659--661
[]\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 661--663
[]\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 663--665
[]\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 665--667
[]\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e
[133]
Underfull \hbox (badness 10000) in paragraph at lines 667--669
[]\T1/txtt/m/n/10 set_team_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod
-ule

Overfull \hbox (122.38219pt too wide) in paragraph at lines 669--671
[]\T1/txtt/m/n/10 spatial_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal
aria.weather.weather_metadata.WeatherAttributes

Underfull \hbox (badness 10000) in paragraph at lines 671--673
[]\T1/txtt/m/n/10 SpatialReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
class in

Underfull \hbox (badness 10000) in paragraph at lines 673--675
[]\T1/txtt/m/n/10 species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (16.16747pt too wide) in paragraph at lines 673--675
\T1/qtm/m/it/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 675--677
[]\T1/txtt/m/n/10 SqlReportMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 677--679
[]\T1/txtt/m/n/10 SqlReportMalariaGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas
s in

Overfull \hbox (55.58226pt too wide) in paragraph at lines 679--681
[]\T1/txtt/m/n/10 step_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_data.DataFrameInfo

Overfull \hbox (31.29233pt too wide) in paragraph at lines 684--686
[]\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_data.WeatherData

Overfull \hbox (16.54234pt too wide) in paragraph at lines 686--688
[]\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_set.WeatherSet

Overfull \hbox (62.79224pt too wide) in paragraph at lines 688--690
[]\T1/txtt/m/n/10 to_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria
.weather.weather_data.WeatherData

Overfull \hbox (48.04225pt too wide) in paragraph at lines 690--692
[]\T1/txtt/m/n/10 to_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria
.weather.weather_set.WeatherSet

Overfull \hbox (36.54231pt too wide) in paragraph at lines 692--694
[]\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat
her.weather_data.WeatherData

Overfull \hbox (36.54231pt too wide) in paragraph at lines 694--696
[]\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat
her.weather_data.WeatherData

Overfull \hbox (74.01233pt too wide) in paragraph at lines 696--698
[]\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat
her.weather_metadata.WeatherMetadata

Overfull \hbox (27.04231pt too wide) in paragraph at lines 698--700
[]\T1/txtt/m/n/10 to_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_set.WeatherSet

Overfull \hbox (48.8824pt too wide) in paragraph at lines 700--702
[]\T1/txtt/m/n/10 tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w
eather_metadata.WeatherAttributes

Overfull \hbox (116.0122pt too wide) in paragraph at lines 702--704
[]\T1/txtt/m/n/10 total_value_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_metadata.WeatherMetadata

Overfull \hbox (69.88234pt too wide) in paragraph at lines 707--709
[]\T1/txtt/m/n/10 update() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_metadata.WeatherAttributes

Overfull \hbox (117.1322pt too wide) in paragraph at lines 709--711
[]\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_metadata.WeatherAttributes

Overfull \hbox (41.7923pt too wide) in paragraph at lines 714--716
[]\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_data.WeatherData

Overfull \hbox (80.38231pt too wide) in paragraph at lines 716--718
[]\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherAttributes

Overfull \hbox (79.26231pt too wide) in paragraph at lines 718--720
[]\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherMetadata

Overfull \hbox (51.64227pt too wide) in paragraph at lines 720--722
[]\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_request.WeatherArgs

Overfull \hbox (27.04231pt too wide) in paragraph at lines 722--724
[]\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 724--726
[]\T1/txtt/m/n/10 validate_str_value() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 724--726
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Overfull \hbox (102.9422pt too wide) in paragraph at lines 726--728
[]\T1/txtt/m/n/10 validate_types() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar
ia.weather.weather_variable.WeatherVariable

Overfull \hbox (60.83224pt too wide) in paragraph at lines 728--730
[]\T1/txtt/m/n/10 value_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_data.DataFrameInfo

Overfull \hbox (16.54234pt too wide) in paragraph at lines 730--732
[]\T1/txtt/m/n/10 values() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 732--734
[]\T1/txtt/m/n/10 VectorHabitatReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Overfull \hbox (53.29224pt too wide) in paragraph at lines 737--739
[]\T1/txtt/m/n/10 weather_columns \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.weather.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 739--740
[]\T1/txtt/m/n/10 weather_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (84.04218pt too wide) in paragraph at lines 740--742
[]\T1/txtt/m/n/10 weather_variables \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_request.DataSource

Overfull \hbox (63.7922pt too wide) in paragraph at lines 742--744
[]\T1/txtt/m/n/10 weather_variables \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 744--746
[]\T1/txtt/m/n/10 WeatherArgs \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 746--748
[]\T1/txtt/m/n/10 WeatherAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 746--748
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 748--750
[]\T1/txtt/m/n/10 WeatherData \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 748--750
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_data\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 750--752
[]\T1/txtt/m/n/10 WeatherMetadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 750--752
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 752--754
[]\T1/txtt/m/n/10 WeatherRequest \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Overfull \hbox (16.7023pt too wide) in paragraph at lines 754--756
[]\T1/txtt/m/n/10 WeatherSet \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emodpy_ma
laria.weather.weather_set\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 756--758
[]\T1/txtt/m/n/10 WeatherVariable \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 756--758
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_variable\T1/qtm/m/n/10 ),

Overfull \hbox (5.75735pt too wide) in paragraph at lines 761--763
[]\T1/txtt/m/n/10 ymd() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emodpy_malar
ia.weather.weather_utils\T1/qtm/m/n/10 ),
[134]) (./institute-for-disease-modeling-emodpy-malaria.aux)

Package rerunfilecheck Warning: File `institute-for-disease-modeling-emodpy-mal
aria.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.

 )
(see the transcript file for additional information){/usr/share/texmf/fonts/enc
/dvips/tex-gyre/q-ec.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r
.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}</usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texmf/fonts/type1/public/tex-
gyre/qhvb.pfb></usr/share/texmf/fonts/type1/public/tex-gyre/qhvr.pfb></usr/shar
e/texmf/fonts/type1/public/tex-gyre/qtmb.pfb></usr/share/texmf/fonts/type1/publ
ic/tex-gyre/qtmr.pfb></usr/share/texmf/fonts/type1/public/tex-gyre/qtmri.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/txfonts/t1xbtt.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/txfonts/t1xbtt.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/txfonts/t1xtt.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/txfonts/t1xtt.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/txfonts/tcxbtt.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/txfo
nts/tcxtt.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb>
Output written on institute-for-disease-modeling-emodpy-malaria.pdf (138 pages,
 579887 bytes).
Transcript written on institute-for-disease-modeling-emodpy-malaria.log.
Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written
Latexmk: References changed.
Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf'
Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf'
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'institute-for-disease-modeling-emodpy-malaria.aux'
      'institute-for-disease-modeling-emodpy-malaria.out'
      'institute-for-disease-modeling-emodpy-malaria.toc'
------------
Run number 3 of rule 'pdflatex'
------------
Latexmk: applying rule 'pdflatex'...
------------
Running 'pdflatex   -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emodpy-malaria"  "emodpy-malaria-docs.tex"'
------------
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./emodpy-malaria-docs.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 84 language(s) loaded.
(./sphinxmanual.cls
Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual)
(/usr/share/texlive/texmf-dist/tex/latex/base/report.cls
Document Class: report 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<<t1.cmap>>)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty
(/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def)
(/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf
(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def
(/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def))))
(/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty)))))
(/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty)
(/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty
(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)
(/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty
(/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty))
(./sphinxlatexliterals.sty
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix 
<2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty)
(/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty))
(./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty)
(./sphinxhighlight.sty) (./sphinxlatextables.sty
(/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty
(/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty))
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty))
(./sphinxlatexnumfig.sty
(/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty))
(./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty)
(./sphinxlatexindbibtoc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty))
(./sphinxlatexstylepage.sty
(/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty)
(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty))
(./sphinxlatexstyleheadings.sty
(/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty))
(./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty))
(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)
(./sphinxmessages.sty)
Writing index file institute-for-disease-modeling-emodpy-malaria.idx
(./institute-for-disease-modeling-emodpy-malaria.aux)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
(/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./institute-for-disease-modeling-emodpy-malaria.out)
(./institute-for-disease-modeling-emodpy-malaria.out)
(/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<<ot1.cmap>><<oml.cmap>><<oms.cma
p>><<omx.cmap>> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo
nts/map/pdftex/updmap/pdftex.map}] [2]
(./institute-for-disease-modeling-emodpy-malaria.toc) [1] [2] [1] [2]
Chapter 1.
(/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4]
Chapter 2.

Overfull \hbox (57.31381pt too wide) in paragraph at lines 258--258
\T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )|  

Underfull \hbox (badness 5274) in paragraph at lines 305--308
[]\T1/qtm/m/n/10 Set ini-tial risk for low-medium trans-mis-sion set-tings per:
 [][]$https : / / wiki . idmod . org / display / MAL /
[5]
Overfull \hbox (20.56392pt too wide) in paragraph at lines 413--413
\T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )|  
[6]
Overfull \hbox (35.49402pt too wide) in paragraph at lines 457--457
\T1/qtm/m/it/10 pop_filename_out=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 spatial_grid
ded_pop_dir\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , 
[7] [8] [9]
Underfull \hbox (badness 10000) in paragraph at lines 733--736
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 743--747
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Underfull \hbox (badness 10000) in paragraph at lines 743--747
\T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1
/txtt/m/n/10 [{ "BitingRisk":"High"},
[10]
Underfull \hbox (badness 10000) in paragraph at lines 878--881
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[11]
Underfull \hbox (badness 10000) in paragraph at lines 888--892
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Underfull \hbox (badness 10000) in paragraph at lines 888--892
\T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1
/txtt/m/n/10 [{ "BitingRisk":"High"},
[12]
Overfull \hbox (27.94388pt too wide) in paragraph at lines 985--985
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (8.55386pt too wide) in paragraph at lines 985--985
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (4.09389pt too wide) in paragraph at lines 985--985
\T1/qtm/m/it/10 out_on_first_occurrence: 
[13]
Underfull \hbox (badness 10000) in paragraph at lines 1026--1029
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 1036--1039
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[14]
Underfull \hbox (badness 10000) in paragraph at lines 1118--1121
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 1128--1131
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Overfull \hbox (31.3137pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 ger_condition_list: 

Overfull \hbox (29.93373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 graphic_coverage: 

Overfull \hbox (61.05371pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (9.43373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 get_age_min: 

Overfull \hbox (11.09373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 get_age_max: 

Overfull \hbox (2.46371pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 get_gender: 

Overfull \hbox (6.86372pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 tial_amount: 

Overfull \hbox (42.41373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 amount_in_shipment: 

Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , 

Overfull \hbox (59.27374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 days_between_shipments: 

Overfull \hbox (11.68375pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 3.40282e+38\T1/qtm/m/n/10 , 

Overfull \hbox (3.82375pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 tion_config: 

Overfull \hbox (1.05374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 tional[][][any] 

Overfull \hbox (60.84373pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 max_distributed_per_day: 

Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , 

Overfull \hbox (0.53372pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 max_stock: 

Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , 

Overfull \hbox (2.71375pt too wide) in paragraph at lines 1170--1170
\T1/qtm/m/it/10 ing_period: 
[15]
Overfull \vbox (11.56755pt too high) has occurred while \output is active
[16]
Underfull \hbox (badness 10000) in paragraph at lines 1203--1206
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[17]
Underfull \hbox (badness 10000) in paragraph at lines 1315--1320
[]\T1/txtt/bx/n/10 diagnostic_type \T1/qtm/m/n/10 ^^U Type of malaria di-ag-nos
-tic used. De-fault is
[18]
Underfull \hbox (badness 10000) in paragraph at lines 1371--1375
[]\T1/qtm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure-

Underfull \hbox (badness 10000) in paragraph at lines 1399--1402
[]\T1/txtt/bx/n/10 measurement_sensitivity \T1/qtm/m/n/10 ^^U Set-ting for \T1/
qtm/b/n/10 Mea-sure-ment_Sensitivity \T1/qtm/m/n/10 in

Underfull \hbox (badness 10000) in paragraph at lines 1428--1434
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v
id-u-al-Prop-erty key:value

Underfull \hbox (badness 10000) in paragraph at lines 1428--1434
\T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t
ic in-ter-ven-

Underfull \hbox (badness 10000) in paragraph at lines 1428--1434
\T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr
opertyValue1"},

Underfull \hbox (badness 10000) in paragraph at lines 1436--1441
[]\T1/txtt/bx/n/10 disqualifying_properties \T1/qtm/m/n/10 ^^U List of In-di-vi
d-u-al-Prop-erty

Underfull \hbox (badness 10000) in paragraph at lines 1436--1441
\T1/qtm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For


Underfull \hbox (badness 10000) in paragraph at lines 1436--1441
\T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu
e1"},
[19]
Underfull \hbox (badness 10000) in paragraph at lines 1464--1468
[]\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 
[{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop-

Overfull \hbox (1.69395pt too wide) in paragraph at lines 1485--1485
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Underfull \hbox (badness 10000) in paragraph at lines 1516--1519
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[20]
Underfull \hbox (badness 10000) in paragraph at lines 1526--1529
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[21]
Overfull \hbox (72.89397pt too wide) in paragraph at lines 1650--1650
\T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received
_Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )|  
[22] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [23]
Overfull \hbox (25.23418pt too wide) in paragraph at lines 1874--1874
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (54.63417pt too wide) in paragraph at lines 1874--1874
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 


Overfull \hbox (30.48416pt too wide) in paragraph at lines 1891--1891
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (59.88416pt too wide) in paragraph at lines 1891--1891
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 

[24]
Overfull \hbox (30.48416pt too wide) in paragraph at lines 1908--1908
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (59.88416pt too wide) in paragraph at lines 1908--1908
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 


Underfull \hbox (badness 10000) in paragraph at lines 1909--1913
[]\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter-
ven-tion to your cam-paign. See

Overfull \hbox (40.98413pt too wide) in paragraph at lines 1925--1925
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (70.38412pt too wide) in paragraph at lines 1925--1925
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 

[25]
Overfull \hbox (35.73415pt too wide) in paragraph at lines 1942--1942
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] 

Overfull \hbox (65.13414pt too wide) in paragraph at lines 1942--1942
\T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] 

[26] [27]
Overfull \hbox (26.20386pt too wide) in paragraph at lines 2099--2099
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (28.42386pt too wide) in paragraph at lines 2099--2099
\T1/qtm/m/it/10 pelling_decay_time_constant: 
[28]
Overfull \hbox (26.20386pt too wide) in paragraph at lines 2178--2178
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (28.42386pt too wide) in paragraph at lines 2178--2178
\T1/qtm/m/it/10 pelling_decay_time_constant: 
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 2384--2387
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 2394--2397
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[32] [33]
Underfull \hbox (badness 10000) in paragraph at lines 2497--2500
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[34]
Underfull \hbox (badness 10000) in paragraph at lines 2587--2590
[]\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^
PTEM-PO-RARY_RAINFALL^^Q, ^^PWA-

Underfull \hbox (badness 10000) in paragraph at lines 2587--2590
\T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P
BRACK-
[35]
Overfull \hbox (54.1938pt too wide) in paragraph at lines 2695--2695
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (1.7138pt too wide) in paragraph at lines 2695--2695
\T1/qtm/m/it/10 leased_infectious: 

Overfull \hbox (19.54382pt too wide) in paragraph at lines 2695--2695
\T1/qtm/m/it/10 leased_microsporidia: 
[36]
Underfull \hbox (badness 10000) in paragraph at lines 2716--2719
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 7576) in paragraph at lines 2732--2734
[]\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t
o re-lease, sets Re-leased_Type =

Underfull \hbox (badness 10000) in paragraph at lines 2743--2746
[]\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec-
tors re-leased that

Underfull \hbox (badness 10000) in paragraph at lines 2743--2746
\T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when

Overfull \hbox (16.29498pt too wide) in paragraph at lines 2743--2746
\T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI
CS' 
[37]
Underfull \hbox (badness 10000) in paragraph at lines 2839--2842
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 2849--2852
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[38]
Overfull \hbox (12.19392pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (14.34396pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 ate_nucleotide_sequence_from: 

Overfull \hbox (79.13393pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: 

Overfull \hbox (118.29388pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: 

Overfull \hbox (74.29391pt too wide) in paragraph at lines 2902--2902
\T1/qtm/m/it/10 hrp_allele_frequencies_per_genome_location: 
[39]
Underfull \hbox (badness 10000) in paragraph at lines 2935--2938
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 2945--2948
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,

Underfull \hbox (badness 10000) in paragraph at lines 2986--2992
[]\T1/txtt/bx/n/10 drug_resistant_string \T1/qtm/m/n/10 ^^U Used with `BAR-CODE
_STRING' or `NU-
[40]
Underfull \hbox (badness 10000) in paragraph at lines 3007--3013
[]\T1/txtt/bx/n/10 barcode_allele_frequencies_per_genome_location \T1/qtm/m/n/1
0 ^^U Used with `AL-

Underfull \hbox (badness 10000) in paragraph at lines 3023--3028
[]\T1/txtt/bx/n/10 hrp_allele_frequencies_per_genome_location \T1/qtm/m/n/10 ^^
U Used with `AL-

Overfull \hbox (17.44391pt too wide) in paragraph at lines 3049--3049
\T1/qtm/m/it/10 timesteps_between_repetitions: 
[41]
Underfull \hbox (badness 10000) in paragraph at lines 3082--3085
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 3092--3095
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[42]
Underfull \hbox (badness 10000) in paragraph at lines 3180--3183
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 3190--3193
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[43]
Overfull \hbox (59.44379pt too wide) in paragraph at lines 3280--3280
\T1/qtm/m/it/10 timesteps_between_repetitions: 
[44]
Overfull \hbox (69.94376pt too wide) in paragraph at lines 3357--3357
\T1/qtm/m/it/10 timesteps_between_repetitions: 
[45]
Underfull \hbox (badness 10000) in paragraph at lines 3391--3394
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Overfull \hbox (33.19386pt too wide) in paragraph at lines 3416--3416
\T1/qtm/m/it/10 timesteps_between_repetitions: 

Overfull \hbox (26.16386pt too wide) in paragraph at lines 3416--3416
\T1/qtm/m/it/10 killing_decay_time_constant: 

Underfull \hbox (badness 10000) in paragraph at lines 3432--3435
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[46] [47]
Underfull \hbox (badness 10000) in paragraph at lines 3550--3553
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with
[48]
Overfull \hbox (5.13391pt too wide) in paragraph at lines 3652--3652
\T1/qtm/m/it/10 drug_ineligibility_duration: 
[49]
Underfull \hbox (badness 10000) in paragraph at lines 3672--3677
[]\T1/txtt/bx/n/10 is \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 properties of individual
s to target with the intervention.

Underfull \hbox (badness 6094) in paragraph at lines 3672--3677
\T1/txtt/m/sl/10 Default\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 [{ "trigger":"NewC
linicalCase","coverage":0.8,"agemin":15,

Underfull \hbox (badness 10000) in paragraph at lines 3672--3677
\T1/txtt/m/n/10 "agemax":70, "seek":0.4,"rate":0.3},{"trigger":"NewSevereCase",


Underfull \hbox (badness 10000) in paragraph at lines 3695--3697
[]\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h
ave to receive the

Underfull \hbox (badness 10000) in paragraph at lines 3695--3697
\T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi
dualProperty1:PropertyValue1",

Overfull \hbox (39.43362pt too wide) in paragraph at lines 3731--3731
[]\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , 

Overfull \hbox (38.10359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 start_day: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (10.26363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 de- 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 mo- 

Overfull \hbox (71.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 graphic_coverage: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (11.9936pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tar- 

Overfull \hbox (84.11362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 get_num_individuals: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (39.17361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]int[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (36.93362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 node_ids: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (103.05359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 in- 

Overfull \hbox (11.28362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ter- 

Overfull \hbox (14.40361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ven- 

Overfull \hbox (43.04362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tion_name: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (14.07361pt too wide) in paragraph at lines 3731--3731
\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- 

Overfull \hbox (26.47362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ageDe- 

Overfull \hbox (15.26363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pen- 

Overfull \hbox (33.59363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 dentBed- 

Overfull \hbox (14.20361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 dis- 

Overfull \hbox (48.29361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 card_config: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 in- 

Overfull \hbox (13.59363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 sec- 

Overfull \hbox (6.38362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ti- 

Overfull \hbox (17.48363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 cide: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.27359pt too wide) in paragraph at lines 3731--3731
\TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 re- 

Overfull \hbox (83.63359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pelling_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 re- 

Overfull \hbox (86.9436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pelling_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 re- 

Overfull \hbox (117.6336pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 pelling_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.63359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (71.9436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (102.6336pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (14.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 730\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.60362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_linear_times: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (72.79362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_linear_values: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 block- 

Overfull \hbox (75.51361pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 ing_expire_at_end: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (81.41359pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 killing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (84.7236pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 killing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (115.4136pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (67.01363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 age_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (14.15363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 sea- 

Overfull \hbox (74.69363pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 sonal_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3731--3731
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 = 

Overfull \hbox (23.6036pt too wide) in paragraph at lines 3731--3731
\T1/qtm/m/it/10 None\T1/txtt/m/n/10 )|  
[50]
Overfull \vbox (839.56755pt too high) has occurred while \output is active
[51]
Underfull \hbox (badness 6188) in paragraph at lines 3736--3741
[]\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect-
Ex-po-nen-tial

Underfull \hbox (badness 10000) in paragraph at lines 3771--3774
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[52] [53]
Overfull \hbox (39.43362pt too wide) in paragraph at lines 3934--3934
[]\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , 

Overfull \hbox (38.10359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 start_day: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (10.26363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 de- 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 mo- 

Overfull \hbox (71.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 graphic_coverage: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (36.93362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 node_ids: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (103.05359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ind_property_restrictions: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 trig- 

Overfull \hbox (73.31358pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ger_condition_list: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 trig- 

Overfull \hbox (93.44359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 gered_campaign_delay: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (46.39362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]float[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (10.27362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 lis- 

Overfull \hbox (12.89363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ten- 

Overfull \hbox (52.80362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (0.82362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 - 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 in- 

Overfull \hbox (11.28362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ter- 

Overfull \hbox (14.40361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ven- 

Overfull \hbox (43.04362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tion_name: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (14.07361pt too wide) in paragraph at lines 3934--3934
\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- 

Overfull \hbox (26.47362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ageDe- 

Overfull \hbox (15.26363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pen- 

Overfull \hbox (33.59363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 dentBed- 

Overfull \hbox (14.20361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 dis- 

Overfull \hbox (48.29361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 card_config: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (8.60362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 in- 

Overfull \hbox (13.59363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 sec- 

Overfull \hbox (6.38362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ti- 

Overfull \hbox (17.48363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 cide: 

Overfull \hbox (7.95361pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 str[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.27359pt too wide) in paragraph at lines 3934--3934
\TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 re- 

Overfull \hbox (83.63359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pelling_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 re- 

Overfull \hbox (86.9436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pelling_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (8.8536pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 re- 

Overfull \hbox (117.6336pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 pelling_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.63359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (12.49362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (71.9436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (102.6336pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (14.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 730\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (68.60362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_linear_times: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (72.79362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_linear_values: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (40.7436pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]list[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (21.93361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 block- 

Overfull \hbox (75.51361pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 ing_expire_at_end: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (81.41359pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 killing_initial_effect: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (84.7236pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 killing_box_duration: 

Overfull \hbox (8.05362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 int[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (4.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 0\T1/qtm/m/n/10 , 

Overfull \hbox (115.4136pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 killing_decay_time_constant: 

Overfull \hbox (15.27362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 float[][] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (19.99362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , 

Overfull \hbox (67.01363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 age_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (20.85362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/qtm/m/n/10 , 

Overfull \hbox (14.15363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 sea- 

Overfull \hbox (74.69363pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 sonal_dependence: 

Overfull \hbox (13.04362pt too wide) in paragraph at lines 3934--3934
[][]\T1/qtm/m/it/10 Op- 

Overfull \hbox (43.61362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 tional[][][[][]dict[][]] 

Overfull \hbox (4.24362pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 = 

Overfull \hbox (23.6036pt too wide) in paragraph at lines 3934--3934
\T1/qtm/m/it/10 None\T1/txtt/m/n/10 )|  
[54]
Overfull \vbox (979.56999pt too high) has occurred while \output is active
[55]
Underfull \hbox (badness 6188) in paragraph at lines 3939--3945
[]\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect-
Ex-po-nen-tial

Underfull \hbox (badness 10000) in paragraph at lines 3970--3973
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[56] [57]
Overfull \hbox (88.19377pt too wide) in paragraph at lines 4147--4147
\T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso
n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )|  
[58]
Underfull \hbox (badness 10000) in paragraph at lines 4191--4194
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 4201--4204
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[59]
Underfull \hbox (badness 10000) in paragraph at lines 4304--4307
[]\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te
r-ven-tion is given, used with

Underfull \hbox (badness 10000) in paragraph at lines 4314--4317
[]\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t
io-nar-ies of In-di-vid-u-al-Prop-er-ties,
[60] [61]
Overfull \hbox (31.91403pt too wide) in paragraph at lines 4485--4485
\T1/qtm/m/it/10 cific_genome_combinations_for_stratification: 
[62]
Underfull \hbox (badness 5119) in paragraph at lines 4535--4542
\T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_
GENOME^^Q spe-
[63] [64] [65]
Overfull \hbox (2.92401pt too wide) in paragraph at lines 4859--4859
\T1/qtm/m/it/10 clude_30day_avg_infection_duration: 
[66]
Overfull \hbox (6.20389pt too wide) in paragraph at lines 4932--4932
\T1/qtm/m/it/10 must_have_ip_key_value: 

Overfull \hbox (1.87387pt too wide) in paragraph at lines 4932--4932
\T1/qtm/m/it/10 must_have_intervention: 

Overfull \hbox (55.41386pt too wide) in paragraph at lines 4932--4932
\T1/qtm/m/it/10 clude_30day_avg_infection_duration: 
[67]
Underfull \hbox (badness 5119) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T
emperature^^Q, ^^PBirths^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite
_Prevalence^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^
^Q, ^^PDis-ease_Deaths^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga
metocyte_Prevalence^^Q,

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u
-la-tion^^Q, ^^PPreva-

Underfull \hbox (badness 10000) in paragraph at lines 5055--5064
\T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr
evalence^^Q De-faults:
[68] [69] [70] [71] [72] [73]
Overfull \hbox (4.70392pt too wide) in paragraph at lines 5611--5611
\T1/qtm/m/it/10 ify_by_clinical_symptoms: 

Overfull \hbox (38.49373pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 drug_resistant_strings: 

Overfull \hbox (102.98372pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 drug_resistant_and_hrp_statistic_type: 

Overfull \hbox (156.42372pt too wide) in paragraph at lines 5657--5657
\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m
/it/10 '\T1/qtm/m/n/10 , 

Overfull \hbox (18.46376pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 ip_key_to_collect: 

Overfull \hbox (4.78375pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 ify_by_gender: 

Overfull \hbox (37.74379pt too wide) in paragraph at lines 5657--5657
\T1/qtm/m/it/10 clude_identity_by_xxx: 
[74] [75]
Overfull \hbox (5.15385pt too wide) in paragraph at lines 5763--5763
\T1/qtm/m/it/10 clude_microsporidia: 
[76]
Underfull \hbox (badness 7308) in paragraph at lines 5833--5835
[]\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or 
ex-clude, de-pend-ing on value of
[77] [78]
Underfull \hbox (badness 10000) in paragraph at lines 6040--6043
\T1/qtm/m/n/10 im-plies one should get data on days Start_Day, Start_Day+Sampli
ng_Period,
[79] [80]
Underfull \hbox (badness 10000) in paragraph at lines 6217--6223
[]\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma
lar-i-a-Trans-mis-sion.csv) is a csv re-

Underfull \hbox (badness 6592) in paragraph at lines 6217--6223
\T1/qtm/m/n/10 port that pro-vides data on malaria trans-mis-sion, by track-ing
 who trans-mit-ted malaria to whom.

Underfull \hbox (badness 10000) in paragraph at lines 6217--6223
\T1/qtm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram
-e-ter \T1/qtm/b/n/10 Malaria_Model \T1/qtm/m/n/10 is set to

Underfull \hbox (badness 5388) in paragraph at lines 6217--6223
\T1/qtm/m/n/10 MALARIA_MECHANISTIC_MODEL_WITH_CO_TRANSMISSION. This re-port is 
typ-i-cally used as
[81] [82] [83]
Overfull \hbox (3.4238pt too wide) in paragraph at lines 6581--6581
\T1/qtm/m/it/10 ing.Optional[str] 
[84] [85] [86] [87]
Overfull \hbox (21.45433pt too wide) in paragraph at lines 6890--6890
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 

Overfull \hbox (11.94434pt too wide) in paragraph at lines 6890--6890
\T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me
tadata.WeatherAttributes[][]\T1/qtm/m/it/10 ] 

Overfull \hbox (21.45433pt too wide) in paragraph at lines 6890--6890
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 

Overfull \hbox (21.45433pt too wide) in paragraph at lines 6949--6949
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 

Overfull \hbox (21.45433pt too wide) in paragraph at lines 6949--6949
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 
[88]
Overfull \hbox (5.21489pt too wide) in paragraph at lines 6981--6984
[]

Overfull \hbox (93.15411pt too wide) in paragraph at lines 7024--7024
\T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me
tadata.WeatherMetadata[][]\T1/qtm/m/it/10 ] 
[89] [90] [91] [92]
Overfull \hbox (162.35397pt too wide) in paragraph at lines 7464--7464
\T1/qtm/m/it/10 tional[][][[][]Union[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weat
her.weather_metadata.WeatherMetadata[][]\T1/qtm/m/it/10 , 

Overfull \hbox (109.32397pt too wide) in paragraph at lines 7464--7464
[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_metadata.WeatherAttributes[][
]\T1/qtm/m/it/10 , 
[93] [94]
Overfull \hbox (79.22398pt too wide) in paragraph at lines 7694--7694
\T1/qtm/m/it/10 tools_platform_comps.comps_platform.COMPSPlatform[][]]\T1/qtm/m
/n/10 , 
[95]
Overfull \hbox (94.95412pt too wide) in paragraph at lines 7817--7817
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 

Overfull \hbox (94.95412pt too wide) in paragraph at lines 7817--7817
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 
[96] [97]
Underfull \hbox (badness 10000) in paragraph at lines 8120--8124
[]\T1/qtm/m/n/10 For ex-am-ple, air

Underfull \hbox (badness 10000) in paragraph at lines 8120--8124
\T1/qtm/m/n/10 tem-per-a-ture could be rep-re-sented as: Weath-er-Vari-able.AIR
_TEMPERATURE:

Overfull \hbox (23.18442pt too wide) in paragraph at lines 8135--8135
\T1/qtm/m/it/10 tional[][][[][]List[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 ]] 

Overfull \hbox (20.21443pt too wide) in paragraph at lines 8135--8135
\T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , 
[98]
Overfull \hbox (21.12492pt too wide) in paragraph at lines 8163--8166
[]

Underfull \hbox (badness 10000) in paragraph at lines 8163--8166
\T1/qtm/m/n/10 In this case low-er-case weather vari-able names are used, for e
x-am-ple:
[99] [100]
Underfull \hbox (badness 10000) in paragraph at lines 8451--8454
[]\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s
im-u-la-tions Malaria_Model =

Underfull \hbox (badness 6510) in paragraph at lines 8465--8467
[]\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u
es are ^^PFIXED_NEIGHBORHOOD^^Q,
[101]
Underfull \hbox (badness 10000) in paragraph at lines 8615--8619
\T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^
PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] =
[102]
Overfull \hbox (31.99455pt too wide) in paragraph at lines 8675--8678
[]\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Female_to_Male_Transmission_Probability

Overfull \hbox (24.19456pt too wide) in paragraph at lines 8680--8683
[]\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 
Mi-crosporidia_Female_To_Egg_Transmission_Probability

Overfull \hbox (34.43456pt too wide) in paragraph at lines 8685--8688
[]\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Male_To_Female_Transmission_Probability

Overfull \hbox (4.75461pt too wide) in paragraph at lines 8690--8694
[]\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi
-crosporidia_Male_To_Egg_Transmission_Probability

Underfull \hbox (badness 10000) in paragraph at lines 8696--8704
[]\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 
^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 8719--8727
[]\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10
 ^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 8719--8727
\T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm
/m/n/10 , A dic-tio-nary for
[103] [104] [105] [106] [107] [108] [109] [110]
Underfull \hbox (badness 10000) in paragraph at lines 9477--9481
\T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^
PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] =
[111]
Overfull \hbox (31.99455pt too wide) in paragraph at lines 9537--9540
[]\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Female_to_Male_Transmission_Probability

Overfull \hbox (24.19456pt too wide) in paragraph at lines 9542--9545
[]\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 
Mi-crosporidia_Female_To_Egg_Transmission_Probability

Overfull \hbox (34.43456pt too wide) in paragraph at lines 9547--9550
[]\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10
 Mi-crosporidia_Male_To_Female_Transmission_Probability

Overfull \hbox (4.75461pt too wide) in paragraph at lines 9552--9556
[]\T1/txtt/bx/n/10 male_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi
-crosporidia_Male_To_Egg_Transmission_Probability

Underfull \hbox (badness 10000) in paragraph at lines 9558--9566
[]\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 
^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 9581--9589
[]\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10
 ^^U \T1/qtm/b/n/10 Mi-

Underfull \hbox (badness 10000) in paragraph at lines 9581--9589
\T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm
/m/n/10 , A dic-tio-nary for
[112] [113] [114]
Chapter 3.
[115] [116] [117]
Overfull \hbox (15.08487pt too wide) in paragraph at lines 9851--9853
\T1/qtm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/<userna
me>@idmod.org:<shh...password>@packages.idmod.org/api/pypi/pypi-
[118] [119] [120] [121] [122] [123] [124]
Overfull \hbox (19.37178pt too wide) in paragraph at lines 10200--10201
[]\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10
 ,

Overfull \hbox (45.6217pt too wide) in paragraph at lines 10205--10206
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m
/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 10208--10209
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ,

Overfull \hbox (14.1218pt too wide) in paragraph at lines 10213--10214
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.malaria_challenge\T1/qtm/m/n/10 
,

Overfull \hbox (3.62183pt too wide) in paragraph at lines 10214--10215
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ,

Overfull \hbox (3.62183pt too wide) in paragraph at lines 10216--10217
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 ,

Overfull \hbox (35.12173pt too wide) in paragraph at lines 10217--10218
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n
/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 10218--10219
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ,

Overfull \hbox (14.1218pt too wide) in paragraph at lines 10220--10221
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 
,

Overfull \hbox (40.37172pt too wide) in paragraph at lines 10221--10222
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/
n/10 ,

Overfull \hbox (3.62183pt too wide) in paragraph at lines 10224--10225
[]\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 ,
[125] (./institute-for-disease-modeling-emodpy-malaria.ind [126]
Underfull \hbox (badness 10000) in paragraph at lines 8--10
[]\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 8--10
\T1/qtm/m/it/10 emodpy_malaria.interventions.common\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 10--12
[]\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 10--12
\T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/txtt/m/n/10 add_challenge_trial() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-
ule

Overfull \hbox (15.59247pt too wide) in paragraph at lines 12--14
\T1/qtm/m/it/10 emodpy_malaria.interventions.malaria_challenge\T1/qtm/m/n/10 ),


Underfull \hbox (badness 10000) in paragraph at lines 14--16
[]\T1/txtt/m/n/10 add_community_health_worker() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Overfull \hbox (47.96248pt too wide) in paragraph at lines 14--16
\T1/qtm/m/it/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m/n
/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 16--18
[]\T1/txtt/m/n/10 add_diagnostic_survey() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Underfull \hbox (badness 10000) in paragraph at lines 16--18
\T1/qtm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 18--20
[]\T1/txtt/m/n/10 add_drug_campaign() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Overfull \hbox (4.22249pt too wide) in paragraph at lines 18--20
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 20--22
[]\T1/txtt/m/n/10 add_drug_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-
ule

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/txtt/m/n/10 add_drug_status_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m
od-ule

Underfull \hbox (badness 10000) in paragraph at lines 24--26
[]\T1/txtt/m/n/10 add_event_recorder() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 26--28
[]\T1/txtt/m/n/10 add_fMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 26--28
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 28--30
[]\T1/txtt/m/n/10 add_genes_and_alleles() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Underfull \hbox (badness 10000) in paragraph at lines 30--32
[]\T1/txtt/m/n/10 add_habitat_reduction_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Overfull \hbox (27.56747pt too wide) in paragraph at lines 30--32
\T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1
0 ),

Underfull \hbox (badness 10000) in paragraph at lines 32--34
[]\T1/txtt/m/n/10 add_human_migration_tracking() \T1/qtm/m/n/10 (\T1/qtm/m/it/1
0 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 34--36
[]\T1/txtt/m/n/10 add_initial_vectors_per_species()

Overfull \hbox (127.35252pt too wide) in paragraph at lines 34--36
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics
.MalariaDemographics

Underfull \hbox (badness 10000) in paragraph at lines 36--38
[]\T1/txtt/m/n/10 add_initial_vectors_per_species_from_csv()

Overfull \hbox (127.35252pt too wide) in paragraph at lines 36--38
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics
.MalariaDemographics

Underfull \hbox (badness 10000) in paragraph at lines 38--40
[]\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 40--42
[]\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 42--44
[]\T1/txtt/m/n/10 add_itn_scheduled() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 44--46
[]\T1/txtt/m/n/10 add_itn_triggered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 46--48
[]\T1/txtt/m/n/10 add_larval_habitat_multiplier()

Overfull \hbox (127.35252pt too wide) in paragraph at lines 46--48
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics
.MalariaDemographics

Underfull \hbox (badness 10000) in paragraph at lines 48--50
[]\T1/txtt/m/n/10 add_larvicide() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 48--50
\T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 52--54
[]\T1/txtt/m/n/10 add_malaria_immunity_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 54--56
[]\T1/txtt/m/n/10 add_malaria_patient_json_report() \T1/qtm/m/n/10 (\T1/qtm/m/i
t/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 56--58
[]\T1/txtt/m/n/10 add_malaria_summary_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 58--60
[]\T1/txtt/m/n/10 add_malaria_survey_analyzer() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 60--62
[]\T1/txtt/m/n/10 add_MDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 60--62
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 62--64
[]\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 64--66
[]\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 66--68
[]\T1/txtt/m/n/10 add_MSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 66--68
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 68--70
[]\T1/txtt/m/n/10 add_mutation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 70--72
[]\T1/txtt/m/n/10 add_outbreak_individual() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 70--72
\T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 72--74
[]\T1/txtt/m/n/10 add_outbreak_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/
10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 74--76
[]\T1/txtt/m/n/10 add_outbreak_malaria_var_genes() \T1/qtm/m/n/10 (\T1/qtm/m/it
/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 76--78
[]\T1/txtt/m/n/10 add_outdoorrestkill() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-
ule
[127]
Underfull \hbox (badness 10000) in paragraph at lines 78--80
[]\T1/txtt/m/n/10 add_report_event_counter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 80--82
[]\T1/txtt/m/n/10 add_report_fpg_output() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Underfull \hbox (badness 10000) in paragraph at lines 84--86
[]\T1/txtt/m/n/10 add_report_intervention_pop_avg() \T1/qtm/m/n/10 (\T1/qtm/m/i
t/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 86--88
[]\T1/txtt/m/n/10 add_report_malaria_filtered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 88--90
[]\T1/txtt/m/n/10 add_report_malaria_filtered_intrahost() \T1/qtm/m/n/10 (\T1/q
tm/m/it/10 in

Underfull \hbox (badness 10000) in paragraph at lines 90--92
[]\T1/txtt/m/n/10 add_report_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 92--94
[]\T1/txtt/m/n/10 add_report_node_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/1
0 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 94--96
[]\T1/txtt/m/n/10 add_report_node_demographics_malaria() \T1/qtm/m/n/10 (\T1/qt
m/m/it/10 in

Overfull \hbox (16.87178pt too wide) in paragraph at lines 96--98
[]\T1/txtt/m/n/10 add_report_node_demographics_malaria_genetics()

Underfull \hbox (badness 10000) in paragraph at lines 98--100
[]\T1/txtt/m/n/10 add_report_simulation_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 100--102
[]\T1/txtt/m/n/10 add_report_vector_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 102--104
[]\T1/txtt/m/n/10 add_report_vector_migration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 104--106
[]\T1/txtt/m/n/10 add_report_vector_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 106--108
[]\T1/txtt/m/n/10 add_report_vector_stats_malaria_genetics()

Underfull \hbox (badness 10000) in paragraph at lines 108--110
[]\T1/txtt/m/n/10 add_rfMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 108--110
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 110--112
[]\T1/txtt/m/n/10 add_rfMSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 110--112
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 112--114
[]\T1/txtt/m/n/10 add_scale_larval_habitats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i
n mod-ule

Overfull \hbox (27.56747pt too wide) in paragraph at lines 112--114
\T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1
0 ),

Underfull \hbox (badness 10000) in paragraph at lines 114--116
[]\T1/txtt/m/n/10 add_scheduled_antimalarial_drug() \T1/qtm/m/n/10 (\T1/qtm/m/i
t/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 116--118
[]\T1/txtt/m/n/10 add_scheduled_input_eir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 116--118
\T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 118--120
[]\T1/txtt/m/n/10 add_scheduled_irs_housing_modification() \T1/qtm/m/n/10 (\T1/
qtm/m/it/10 in

Underfull \hbox (badness 10000) in paragraph at lines 120--122
[]\T1/txtt/m/n/10 add_scheduled_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 120--122
\T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 122--124
[]\T1/txtt/m/n/10 add_scheduled_mosquito_release() \T1/qtm/m/n/10 (\T1/qtm/m/it
/10 in mod-ule

Overfull \hbox (5.84247pt too wide) in paragraph at lines 122--124
\T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 124--126
[]\T1/txtt/m/n/10 add_scheduled_space_spraying() \T1/qtm/m/n/10 (\T1/qtm/m/it/1
0 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 124--126
\T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 126--128
[]\T1/txtt/m/n/10 add_scheduled_sugar_trap() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 126--128
\T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 128--130
[]\T1/txtt/m/n/10 add_scheduled_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt
m/m/it/10 in

Overfull \hbox (72.8525pt too wide) in paragraph at lines 128--130
\T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/
qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 130--132
[]\T1/txtt/m/n/10 add_scheduled_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Underfull \hbox (badness 10000) in paragraph at lines 130--132
\T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 134--136
[]\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 136--138
[]\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 138--140
[]\T1/txtt/m/n/10 add_species_drivers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-
ule

Underfull \hbox (badness 10000) in paragraph at lines 140--142
[]\T1/txtt/m/n/10 add_sql_report_malaria() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m
od-ule

Underfull \hbox (badness 10000) in paragraph at lines 142--144
[]\T1/txtt/m/n/10 add_sql_report_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/i
t/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 144--145
[]\T1/txtt/m/n/10 add_trait() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 145--147
[]\T1/txtt/m/n/10 add_treatment_seeking() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Overfull \hbox (13.81248pt too wide) in paragraph at lines 145--147
\T1/qtm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 ),


Underfull \hbox (badness 10000) in paragraph at lines 147--149
\T1/qtm/m/it/10 ule emodpy_malaria.interventions.common\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 149--151
[]\T1/txtt/m/n/10 add_triggered_irs_housing_modification() \T1/qtm/m/n/10 (\T1/
qtm/m/it/10 in

Underfull \hbox (badness 10000) in paragraph at lines 151--153
[]\T1/txtt/m/n/10 add_triggered_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 151--153
\T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 153--155
[]\T1/txtt/m/n/10 add_triggered_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt
m/m/it/10 in

Overfull \hbox (72.8525pt too wide) in paragraph at lines 153--155
\T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/
qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 155--157
[]\T1/txtt/m/n/10 add_triggered_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo
d-ule

Underfull \hbox (badness 10000) in paragraph at lines 155--157
\T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 157--159
[]\T1/txtt/m/n/10 add_vector_habitat_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i
n mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 159--161
[]\T1/txtt/m/n/10 add_visualizations() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 161--163
[]\T1/txtt/m/n/10 adherent_drug() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 161--163
\T1/qtm/m/it/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 ),

Overfull \hbox (97.69139pt too wide) in paragraph at lines 163--165
[]\T1/txtt/m/n/10 AIR_TEMPERATURE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.weather.weather_variable.WeatherVariable
[128]
Underfull \hbox (badness 10000) in paragraph at lines 165--167
[]\T1/txtt/m/n/10 all_vectors_if_none() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-
ule

Overfull \hbox (79.26231pt too wide) in paragraph at lines 167--169
[]\T1/txtt/m/n/10 attributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherMetadata

Overfull \hbox (27.04231pt too wide) in paragraph at lines 169--171
[]\T1/txtt/m/n/10 attributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_set.WeatherSet

Overfull \hbox (106.63223pt too wide) in paragraph at lines 171--173
[]\T1/txtt/m/n/10 attributes_dict \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.weather.weather_metadata.WeatherAttributes

Overfull \hbox (59.38237pt too wide) in paragraph at lines 173--175
[]\T1/txtt/m/n/10 author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather
.weather_metadata.WeatherAttributes

Underfull \hbox (badness 10000) in paragraph at lines 178--180
[]\T1/txtt/m/n/10 check_vectors() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (52.95236pt too wide) in paragraph at lines 180--182
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.MalariaImmunityReport

Overfull \hbox (66.65236pt too wide) in paragraph at lines 182--184
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.MalariaPatientJSONReport

Overfull \hbox (53.25237pt too wide) in paragraph at lines 184--186
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.MalariaSummaryReport

Overfull \hbox (73.90236pt too wide) in paragraph at lines 186--188
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.MalariaSurveyJSONAnalyzer

Overfull \hbox (27.91235pt too wide) in paragraph at lines 188--190
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportDrugStatus

Overfull \hbox (37.50235pt too wide) in paragraph at lines 190--192
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportEventCounter

Overfull \hbox (123.31236pt too wide) in paragraph at lines 192--194
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportFpgOutputForObservationalModel

Overfull \hbox (86.26233pt too wide) in paragraph at lines 194--196
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportHumanMigrationTracking

Overfull \hbox (69.73235pt too wide) in paragraph at lines 196--198
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportInfectionStatsMalaria

Overfull \hbox (61.24232pt too wide) in paragraph at lines 198--200
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportInterventionPopAvg

Overfull \hbox (46.60233pt too wide) in paragraph at lines 200--202
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportMalariaFiltered

Overfull \hbox (85.14232pt too wide) in paragraph at lines 202--204
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportMalariaFilteredIntraHost

Overfull \hbox (39.93236pt too wide) in paragraph at lines 204--206
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportMicrosporidia

Overfull \hbox (61.69237pt too wide) in paragraph at lines 206--208
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportNodeDemographics

Overfull \hbox (94.47237pt too wide) in paragraph at lines 208--210
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportNodeDemographicsMalaria

Overfull \hbox (129.31238pt too wide) in paragraph at lines 210--212
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportNodeDemographicsMalariaGenetics

Overfull \hbox (95.20233pt too wide) in paragraph at lines 212--214
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportSimpleMalariaTransmission

Overfull \hbox (45.04236pt too wide) in paragraph at lines 214--216
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportSimulationStats

Overfull \hbox (43.05237pt too wide) in paragraph at lines 216--218
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportVectorGenetics

Overfull \hbox (48.32236pt too wide) in paragraph at lines 218--220
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportVectorMigration

Overfull \hbox (27.51236pt too wide) in paragraph at lines 220--222
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportVectorStats

Overfull \hbox (95.13237pt too wide) in paragraph at lines 222--224
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.ReportVectorStatsMalariaGenetics

Overfull \hbox (74.94232pt too wide) in paragraph at lines 224--226
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.SpatialReportMalariaFiltered

Overfull \hbox (27.96236pt too wide) in paragraph at lines 226--228
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.SqlReportMalaria

Overfull \hbox (62.80237pt too wide) in paragraph at lines 228--230
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.SqlReportMalariaGenetics

Overfull \hbox (38.77235pt too wide) in paragraph at lines 230--232
[]\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor
ters.builtin.VectorHabitatReport

Underfull \hbox (badness 10000) in paragraph at lines 232--234
[]\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 234--236
[]\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 236--237
[]\T1/txtt/m/n/10 csv_to_weather() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (10.29239pt too wide) in paragraph at lines 240--242
[]\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w
eather_data.WeatherData

Overfull \hbox (48.51231pt too wide) in paragraph at lines 242--244
[]\T1/txtt/m/n/10 data_id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weathe
r.weather_request.WeatherRequest

Overfull \hbox (80.38231pt too wide) in paragraph at lines 244--246
[]\T1/txtt/m/n/10 data_years \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherAttributes

Underfull \hbox (badness 10000) in paragraph at lines 246--248
[]\T1/txtt/m/n/10 DataFrameInfo \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 246--248
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_data\T1/qtm/m/n/10 ),

Overfull \hbox (34.68227pt too wide) in paragraph at lines 248--250
[]\T1/txtt/m/n/10 DataSource \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emodpy_ma
laria.weather.weather_request\T1/qtm/m/n/10 ),

Overfull \hbox (105.51224pt too wide) in paragraph at lines 250--252
[]\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.weather.weather_metadata.WeatherMetadata

Overfull \hbox (90.88228pt too wide) in paragraph at lines 252--254
[]\T1/txtt/m/n/10 date_created \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_metadata.WeatherAttributes

Overfull \hbox (81.83218pt too wide) in paragraph at lines 254--256
[]\T1/txtt/m/n/10 detect_columns() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar
ia.weather.weather_data.DataFrameInfo

Overfull \hbox (16.54234pt too wide) in paragraph at lines 256--258
[]\T1/txtt/m/n/10 dir_path \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_set.WeatherSet

Overfull \hbox (47.7523pt too wide) in paragraph at lines 258--260
[]\T1/txtt/m/n/10 download \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_request.RequestReport

Overfull \hbox (64.26227pt too wide) in paragraph at lines 260--262
[]\T1/txtt/m/n/10 download() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_request.WeatherRequest

Underfull \hbox (badness 10000) in paragraph at lines 262--264
[]\T1/txtt/m/n/10 drug_configs_from_code() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m
od-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 262--264
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Overfull \hbox (16.87178pt too wide) in paragraph at lines 271--272
[]\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics 
[129]
Overfull \hbox (43.1217pt too wide) in paragraph at lines 281--282
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker 

Overfull \hbox (11.6218pt too wide) in paragraph at lines 297--298
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.malaria_challenge 

Overfull \hbox (1.12183pt too wide) in paragraph at lines 299--300
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease 

Overfull \hbox (1.12183pt too wide) in paragraph at lines 303--304
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill 

Overfull \hbox (32.62173pt too wide) in paragraph at lines 305--306
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats 

Overfull \hbox (11.6218pt too wide) in paragraph at lines 311--312
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking 

Overfull \hbox (37.87172pt too wide) in paragraph at lines 313--314
[]\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet 

Overfull \hbox (1.12183pt too wide) in paragraph at lines 319--320
[]\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params 

Overfull \hbox (27.04231pt too wide) in paragraph at lines 346--348
[]\T1/txtt/m/n/10 file_names \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_set.WeatherSet

Overfull \hbox (52.54227pt too wide) in paragraph at lines 348--350
[]\T1/txtt/m/n/10 file_prefix \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_request.DataSource

Overfull \hbox (38.01234pt too wide) in paragraph at lines 350--352
[]\T1/txtt/m/n/10 files \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.
weather_request.WeatherRequest

Overfull \hbox (69.51225pt too wide) in paragraph at lines 352--354
[]\T1/txtt/m/n/10 files_exist \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_request.WeatherRequest

Underfull \hbox (badness 10000) in paragraph at lines 354--356
[]\T1/txtt/m/n/10 fmda_cfg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (4.22249pt too wide) in paragraph at lines 354--356
\T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 356--358
[]\T1/txtt/m/n/10 format_create_date()

Overfull \hbox (66.21246pt too wide) in paragraph at lines 356--358
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather
Attributes

Overfull \hbox (41.7923pt too wide) in paragraph at lines 358--360
[]\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_data.WeatherData

Overfull \hbox (27.04231pt too wide) in paragraph at lines 360--362
[]\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 362--364
[]\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (36.1975pt too wide) in paragraph at lines 362--364
\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 )
,

Overfull \hbox (73.2922pt too wide) in paragraph at lines 364--366
[]\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar
ia.weather.weather_data.WeatherData

Overfull \hbox (58.54222pt too wide) in paragraph at lines 366--368
[]\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar
ia.weather.weather_set.WeatherSet

Overfull \hbox (47.04228pt too wide) in paragraph at lines 368--370
[]\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_data.WeatherData

Overfull \hbox (47.04228pt too wide) in paragraph at lines 370--372
[]\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_data.WeatherData

Overfull \hbox (84.5123pt too wide) in paragraph at lines 372--374
[]\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_metadata.WeatherMetadata

Overfull \hbox (37.54228pt too wide) in paragraph at lines 374--376
[]\T1/txtt/m/n/10 from_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 376--378
[]\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (36.1975pt too wide) in paragraph at lines 376--378
\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 )
,
[130]
Underfull \hbox (badness 10000) in paragraph at lines 378--380
[]\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (36.1975pt too wide) in paragraph at lines 378--380
\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 )
,

Underfull \hbox (badness 10000) in paragraph at lines 380--382
[]\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Overfull \hbox (36.1975pt too wide) in paragraph at lines 380--382
\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 )
,

Overfull \hbox (64.26227pt too wide) in paragraph at lines 385--387
[]\T1/txtt/m/n/10 generate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_request.WeatherRequest

Underfull \hbox (badness 10000) in paragraph at lines 387--388
[]\T1/txtt/m/n/10 generate_weather() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule


Underfull \hbox (badness 10000) in paragraph at lines 388--390
[]\T1/txtt/m/n/10 get_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 390--392
[]\T1/txtt/m/n/10 get_file_from_http() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 392--394
[]\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 394--396
[]\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 399--401
[]\T1/txtt/m/n/10 hash_series() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 399--401
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Overfull \hbox (90.88228pt too wide) in paragraph at lines 404--406
[]\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_metadata.WeatherAttributes

Underfull \hbox (badness 10000) in paragraph at lines 406--408
[]\T1/txtt/m/n/10 invert_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 406--408
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 408--410
[]\T1/txtt/m/n/10 irs_configuration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Overfull \hbox (11.29236pt too wide) in paragraph at lines 410--412
[]\T1/txtt/m/n/10 items() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weathe
r.weather_set.WeatherSet

Overfull \hbox (6.04237pt too wide) in paragraph at lines 415--417
[]\T1/txtt/m/n/10 keys() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather
.weather_set.WeatherSet

Overfull \hbox (102.94138pt too wide) in paragraph at lines 420--422
[]\T1/txtt/m/n/10 LAND_TEMPERATURE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar
ia.weather.weather_variable.WeatherVariable

Overfull \hbox (50.44235pt too wide) in paragraph at lines 422--424
[]\T1/txtt/m/n/10 list() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather
.weather_variable.WeatherVariable

Overfull \hbox (59.01228pt too wide) in paragraph at lines 424--426
[]\T1/txtt/m/n/10 local_dir \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat
her.weather_request.WeatherRequest

Overfull \hbox (63.7922pt too wide) in paragraph at lines 429--431
[]\T1/txtt/m/n/10 make_file_paths() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 431--433
[]\T1/txtt/m/n/10 make_path() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 431--433
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 433--435
[]\T1/txtt/m/n/10 MalariaDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Overfull \hbox (36.1975pt too wide) in paragraph at lines 433--435
\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 )
,

Underfull \hbox (badness 10000) in paragraph at lines 435--437
[]\T1/txtt/m/n/10 MalariaImmunityReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i
n

Underfull \hbox (badness 10000) in paragraph at lines 437--439
[]\T1/txtt/m/n/10 MalariaPatientJSONReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas
s in

Underfull \hbox (badness 10000) in paragraph at lines 439--441
[]\T1/txtt/m/n/10 MalariaSummaryReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in


Underfull \hbox (badness 10000) in paragraph at lines 441--443
[]\T1/txtt/m/n/10 MalariaSurveyJSONAnalyzer \T1/qtm/m/n/10 (\T1/qtm/m/it/10 cla
ss in

Overfull \hbox (31.29233pt too wide) in paragraph at lines 443--445
[]\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_data.WeatherData

Underfull \hbox (badness 10000) in paragraph at lines 445--447
[]\T1/txtt/m/n/10 metadata_defaults_dict()

Overfull \hbox (66.21246pt too wide) in paragraph at lines 445--447
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather
Attributes

Overfull \hbox (39.37178pt too wide) in paragraph at lines 450--451
[]| \T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/
10 ,

Overfull \hbox (7.87187pt too wide) in paragraph at lines 452--453
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 ,

Overfull \hbox (65.6217pt too wide) in paragraph at lines 455--456
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm
/m/n/10 ,

Overfull \hbox (2.62189pt too wide) in paragraph at lines 456--457
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 ,

Overfull \hbox (13.12186pt too wide) in paragraph at lines 458--459
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 461--462
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 462--463
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ,

Overfull \hbox (34.1218pt too wide) in paragraph at lines 463--464
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.malaria_challenge\T1/qtm/m/n/1
0 ,

Overfull \hbox (23.62183pt too wide) in paragraph at lines 464--465
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 
,

Overfull \hbox (23.62183pt too wide) in paragraph at lines 466--467
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 
,

Overfull \hbox (55.12173pt too wide) in paragraph at lines 467--468
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m
/n/10 ,

Overfull \hbox (13.12186pt too wide) in paragraph at lines 468--469
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ,
[131]
Underfull \hbox (badness 10000) in paragraph at lines 469--470
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ,

Overfull \hbox (34.1218pt too wide) in paragraph at lines 470--471
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/1
0 ,

Overfull \hbox (60.37172pt too wide) in paragraph at lines 471--472
[]| \T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/
m/n/10 ,

Overfull \hbox (23.62183pt too wide) in paragraph at lines 474--475
[]| \T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 
,

Underfull \hbox (badness 10000) in paragraph at lines 481--482
[]| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 482--483
[]| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_request\T1/qtm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 485--486
[]| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_variable\T1/qtm/m/n/10 ,

Overfull \hbox (15.79237pt too wide) in paragraph at lines 489--491
[]\T1/txtt/m/n/10 name \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w
eather_request.DataSource

Underfull \hbox (badness 10000) in paragraph at lines 491--493
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 493--495
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 495--497
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 495--497
\T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 497--499
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 499--501
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 499--501
\T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 501--503
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Overfull \hbox (5.84247pt too wide) in paragraph at lines 501--503
\T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 503--505
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 503--505
\T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 505--507
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 505--507
\T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 507--509
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Overfull \hbox (41.7425pt too wide) in paragraph at lines 507--509
\T1/qtm/m/it/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/n/
10 ),

Underfull \hbox (badness 10000) in paragraph at lines 509--511
[]\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in
 mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 509--511
\T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ),

Overfull \hbox (55.58226pt too wide) in paragraph at lines 511--513
[]\T1/txtt/m/n/10 node_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_data.DataFrameInfo

Overfull \hbox (79.26231pt too wide) in paragraph at lines 513--515
[]\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherMetadata

Overfull \hbox (105.51224pt too wide) in paragraph at lines 515--517
[]\T1/txtt/m/n/10 node_offset_str \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.weather.weather_metadata.WeatherMetadata

Overfull \hbox (89.76228pt too wide) in paragraph at lines 517--519
[]\T1/txtt/m/n/10 node_offsets \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_metadata.WeatherMetadata

Overfull \hbox (53.01239pt too wide) in paragraph at lines 519--521
[]\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.
weather_metadata.WeatherMetadata

Overfull \hbox (89.76228pt too wide) in paragraph at lines 524--526
[]\T1/txtt/m/n/10 offset_nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_metadata.WeatherMetadata

Overfull \hbox (63.45233pt too wide) in paragraph at lines 529--531
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.MalariaImmunityReport

Overfull \hbox (77.15233pt too wide) in paragraph at lines 531--533
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.MalariaPatientJSONReport

Overfull \hbox (63.75233pt too wide) in paragraph at lines 533--535
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.MalariaSummaryReport

Overfull \hbox (84.40233pt too wide) in paragraph at lines 535--537
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.MalariaSurveyJSONAnalyzer

Overfull \hbox (38.41232pt too wide) in paragraph at lines 537--539
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportDrugStatus

Overfull \hbox (48.00232pt too wide) in paragraph at lines 539--541
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportEventCounter

Overfull \hbox (133.81233pt too wide) in paragraph at lines 541--543
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportFpgOutputForObservationalModel

Overfull \hbox (96.7623pt too wide) in paragraph at lines 543--545
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportHumanMigrationTracking

Overfull \hbox (80.23232pt too wide) in paragraph at lines 545--547
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportInfectionStatsMalaria

Overfull \hbox (71.7423pt too wide) in paragraph at lines 547--549
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportInterventionPopAvg

Overfull \hbox (57.1023pt too wide) in paragraph at lines 549--551
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportMalariaFiltered

Overfull \hbox (95.64229pt too wide) in paragraph at lines 551--553
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportMalariaFilteredIntraHost

Overfull \hbox (50.43233pt too wide) in paragraph at lines 553--555
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportMicrosporidia

Overfull \hbox (72.19234pt too wide) in paragraph at lines 555--557
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportNodeDemographics

Overfull \hbox (104.97234pt too wide) in paragraph at lines 557--559
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportNodeDemographicsMalaria

Overfull \hbox (139.81235pt too wide) in paragraph at lines 559--561
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportNodeDemographicsMalariaGenetics

Overfull \hbox (105.7023pt too wide) in paragraph at lines 561--563
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportSimpleMalariaTransmission

Overfull \hbox (55.54233pt too wide) in paragraph at lines 563--565
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportSimulationStats
[132]
Overfull \hbox (53.55234pt too wide) in paragraph at lines 565--567
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportVectorGenetics

Overfull \hbox (58.82233pt too wide) in paragraph at lines 567--569
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportVectorMigration

Overfull \hbox (38.01233pt too wide) in paragraph at lines 569--571
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportVectorStats

Overfull \hbox (105.63234pt too wide) in paragraph at lines 571--573
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.ReportVectorStatsMalariaGenetics

Overfull \hbox (85.44229pt too wide) in paragraph at lines 573--575
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.SpatialReportMalariaFiltered

Overfull \hbox (38.46233pt too wide) in paragraph at lines 575--577
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.SqlReportMalaria

Overfull \hbox (73.30234pt too wide) in paragraph at lines 577--579
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.SqlReportMalariaGenetics

Overfull \hbox (49.27232pt too wide) in paragraph at lines 579--581
[]\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep
orters.builtin.VectorHabitatReport

Underfull \hbox (badness 10000) in paragraph at lines 581--583
[]\T1/txtt/m/n/10 parse_date() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 581--583
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Overfull \hbox (80.38231pt too wide) in paragraph at lines 583--585
[]\T1/txtt/m/n/10 provenance \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherAttributes

Overfull \hbox (60.9415pt too wide) in paragraph at lines 588--590
[]\T1/txtt/m/n/10 RAINFALL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_variable.WeatherVariable

Overfull \hbox (108.19136pt too wide) in paragraph at lines 590--592
[]\T1/txtt/m/n/10 RELATIVE_HUMIDITY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_variable.WeatherVariable

Overfull \hbox (43.26233pt too wide) in paragraph at lines 592--594
[]\T1/txtt/m/n/10 report \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather
.weather_request.WeatherRequest

Underfull \hbox (badness 10000) in paragraph at lines 594--596
[]\T1/txtt/m/n/10 ReportDrugStatus \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 596--598
[]\T1/txtt/m/n/10 ReportEventCounter \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 600--602
[]\T1/txtt/m/n/10 ReportHumanMigrationTracking \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
class in

Underfull \hbox (badness 10000) in paragraph at lines 602--604
[]\T1/txtt/m/n/10 ReportInfectionStatsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 c
lass in

Underfull \hbox (badness 10000) in paragraph at lines 604--606
[]\T1/txtt/m/n/10 ReportInterventionPopAvg \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas
s in

Underfull \hbox (badness 10000) in paragraph at lines 606--608
[]\T1/txtt/m/n/10 ReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i
n

Underfull \hbox (badness 10000) in paragraph at lines 608--610
[]\T1/txtt/m/n/10 ReportMalariaFilteredIntraHost \T1/qtm/m/n/10 (\T1/qtm/m/it/1
0 class in

Underfull \hbox (badness 10000) in paragraph at lines 610--612
[]\T1/txtt/m/n/10 ReportMicrosporidia \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 612--614
[]\T1/txtt/m/n/10 ReportNodeDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class 
in

Underfull \hbox (badness 10000) in paragraph at lines 614--616
[]\T1/txtt/m/n/10 ReportNodeDemographicsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10
 class in

Underfull \hbox (badness 10000) in paragraph at lines 618--620
[]\T1/txtt/m/n/10 ReportSimpleMalariaTransmission \T1/qtm/m/n/10 (\T1/qtm/m/it/
10 class in

Underfull \hbox (badness 10000) in paragraph at lines 620--622
[]\T1/txtt/m/n/10 ReportSimulationStats \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i
n

Underfull \hbox (badness 10000) in paragraph at lines 622--624
[]\T1/txtt/m/n/10 ReportVectorGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in


Underfull \hbox (badness 10000) in paragraph at lines 624--626
[]\T1/txtt/m/n/10 ReportVectorMigration \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i
n

Underfull \hbox (badness 10000) in paragraph at lines 626--628
[]\T1/txtt/m/n/10 ReportVectorStats \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 628--630
[]\T1/txtt/m/n/10 ReportVectorStatsMalariaGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it
/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 630--632
[]\T1/txtt/m/n/10 RequestReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 632--634
[]\T1/txtt/m/n/10 required_metadata_defaults_dict()

Overfull \hbox (66.21246pt too wide) in paragraph at lines 632--634
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather
Attributes

Underfull \hbox (badness 10000) in paragraph at lines 637--639
[]\T1/txtt/m/n/10 save_json() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 637--639
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 639--641
[]\T1/txtt/m/n/10 select_weather_files()

Overfull \hbox (12.87247pt too wide) in paragraph at lines 639--641
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_set.WeatherSet

Overfull \hbox (89.76228pt too wide) in paragraph at lines 641--643
[]\T1/txtt/m/n/10 series_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_metadata.WeatherMetadata

Overfull \hbox (79.26231pt too wide) in paragraph at lines 643--645
[]\T1/txtt/m/n/10 series_len \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherMetadata

Underfull \hbox (badness 10000) in paragraph at lines 645--647
[]\T1/txtt/m/n/10 series_unique_count

Overfull \hbox (65.09247pt too wide) in paragraph at lines 645--647
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather
Metadata

Underfull \hbox (badness 10000) in paragraph at lines 647--649
[]\T1/txtt/m/n/10 set_drug_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 649--651
[]\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 651--653
[]\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in 
mod-ule

Underfull \hbox (badness 10000) in paragraph at lines 653--655
[]\T1/txtt/m/n/10 set_parasite_genetics_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/1
0 in mod-ule

Overfull \hbox (167.7723pt too wide) in paragraph at lines 655--657
[]\T1/txtt/m/n/10 set_risk_high() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.demographics.MalariaDemographics.MalariaDemographics

Underfull \hbox (badness 10000) in paragraph at lines 657--659
[]\T1/txtt/m/n/10 set_risk_lowmedium()

Overfull \hbox (127.35252pt too wide) in paragraph at lines 657--659
\T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics
.MalariaDemographics

Underfull \hbox (badness 10000) in paragraph at lines 659--661
[]\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 661--663
[]\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 663--665
[]\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e

Underfull \hbox (badness 10000) in paragraph at lines 665--667
[]\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul
e
[133]
Underfull \hbox (badness 10000) in paragraph at lines 667--669
[]\T1/txtt/m/n/10 set_team_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod
-ule

Overfull \hbox (122.38219pt too wide) in paragraph at lines 669--671
[]\T1/txtt/m/n/10 spatial_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal
aria.weather.weather_metadata.WeatherAttributes

Underfull \hbox (badness 10000) in paragraph at lines 671--673
[]\T1/txtt/m/n/10 SpatialReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 
class in

Underfull \hbox (badness 10000) in paragraph at lines 673--675
[]\T1/txtt/m/n/10 species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (16.16747pt too wide) in paragraph at lines 673--675
\T1/qtm/m/it/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 675--677
[]\T1/txtt/m/n/10 SqlReportMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 677--679
[]\T1/txtt/m/n/10 SqlReportMalariaGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas
s in

Overfull \hbox (55.58226pt too wide) in paragraph at lines 679--681
[]\T1/txtt/m/n/10 step_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we
ather.weather_data.DataFrameInfo

Overfull \hbox (31.29233pt too wide) in paragraph at lines 684--686
[]\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_data.WeatherData

Overfull \hbox (16.54234pt too wide) in paragraph at lines 686--688
[]\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_set.WeatherSet

Overfull \hbox (62.79224pt too wide) in paragraph at lines 688--690
[]\T1/txtt/m/n/10 to_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria
.weather.weather_data.WeatherData

Overfull \hbox (48.04225pt too wide) in paragraph at lines 690--692
[]\T1/txtt/m/n/10 to_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria
.weather.weather_set.WeatherSet

Overfull \hbox (36.54231pt too wide) in paragraph at lines 692--694
[]\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat
her.weather_data.WeatherData

Overfull \hbox (36.54231pt too wide) in paragraph at lines 694--696
[]\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat
her.weather_data.WeatherData

Overfull \hbox (74.01233pt too wide) in paragraph at lines 696--698
[]\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat
her.weather_metadata.WeatherMetadata

Overfull \hbox (27.04231pt too wide) in paragraph at lines 698--700
[]\T1/txtt/m/n/10 to_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_set.WeatherSet

Overfull \hbox (48.8824pt too wide) in paragraph at lines 700--702
[]\T1/txtt/m/n/10 tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w
eather_metadata.WeatherAttributes

Overfull \hbox (116.0122pt too wide) in paragraph at lines 702--704
[]\T1/txtt/m/n/10 total_value_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_metadata.WeatherMetadata

Overfull \hbox (69.88234pt too wide) in paragraph at lines 707--709
[]\T1/txtt/m/n/10 update() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_metadata.WeatherAttributes

Overfull \hbox (117.1322pt too wide) in paragraph at lines 709--711
[]\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_metadata.WeatherAttributes

Overfull \hbox (41.7923pt too wide) in paragraph at lines 714--716
[]\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_data.WeatherData

Overfull \hbox (80.38231pt too wide) in paragraph at lines 716--718
[]\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherAttributes

Overfull \hbox (79.26231pt too wide) in paragraph at lines 718--720
[]\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_metadata.WeatherMetadata

Overfull \hbox (51.64227pt too wide) in paragraph at lines 720--722
[]\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_request.WeatherArgs

Overfull \hbox (27.04231pt too wide) in paragraph at lines 722--724
[]\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea
ther.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 724--726
[]\T1/txtt/m/n/10 validate_str_value() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u
le

Underfull \hbox (badness 10000) in paragraph at lines 724--726
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ),

Overfull \hbox (102.9422pt too wide) in paragraph at lines 726--728
[]\T1/txtt/m/n/10 validate_types() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar
ia.weather.weather_variable.WeatherVariable

Overfull \hbox (60.83224pt too wide) in paragraph at lines 728--730
[]\T1/txtt/m/n/10 value_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w
eather.weather_data.DataFrameInfo

Overfull \hbox (16.54234pt too wide) in paragraph at lines 730--732
[]\T1/txtt/m/n/10 values() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath
er.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 732--734
[]\T1/txtt/m/n/10 VectorHabitatReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Overfull \hbox (53.29224pt too wide) in paragraph at lines 737--739
[]\T1/txtt/m/n/10 weather_columns \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari
a.weather.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 739--740
[]\T1/txtt/m/n/10 weather_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule

Overfull \hbox (84.04218pt too wide) in paragraph at lines 740--742
[]\T1/txtt/m/n/10 weather_variables \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_request.DataSource

Overfull \hbox (63.7922pt too wide) in paragraph at lines 742--744
[]\T1/txtt/m/n/10 weather_variables \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala
ria.weather.weather_set.WeatherSet

Underfull \hbox (badness 10000) in paragraph at lines 744--746
[]\T1/txtt/m/n/10 WeatherArgs \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 746--748
[]\T1/txtt/m/n/10 WeatherAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 746--748
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 748--750
[]\T1/txtt/m/n/10 WeatherData \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 748--750
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_data\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 750--752
[]\T1/txtt/m/n/10 WeatherMetadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 750--752
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 752--754
[]\T1/txtt/m/n/10 WeatherRequest \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Overfull \hbox (16.7023pt too wide) in paragraph at lines 754--756
[]\T1/txtt/m/n/10 WeatherSet \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emodpy_ma
laria.weather.weather_set\T1/qtm/m/n/10 ),

Underfull \hbox (badness 10000) in paragraph at lines 756--758
[]\T1/txtt/m/n/10 WeatherVariable \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in

Underfull \hbox (badness 10000) in paragraph at lines 756--758
\T1/qtm/m/it/10 emodpy_malaria.weather.weather_variable\T1/qtm/m/n/10 ),

Overfull \hbox (5.75735pt too wide) in paragraph at lines 761--763
[]\T1/txtt/m/n/10 ymd() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emodpy_malar
ia.weather.weather_utils\T1/qtm/m/n/10 ),
[134]) (./institute-for-disease-modeling-emodpy-malaria.aux) )
(see the transcript file for additional information){/usr/share/texmf/fonts/enc
/dvips/tex-gyre/q-ec.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r
.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}</usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmsy5.pfb></usr/share/texmf/fonts/type1/public/tex-
gyre/qhvb.pfb></usr/share/texmf/fonts/type1/public/tex-gyre/qhvr.pfb></usr/shar
e/texmf/fonts/type1/public/tex-gyre/qtmb.pfb></usr/share/texmf/fonts/type1/publ
ic/tex-gyre/qtmr.pfb></usr/share/texmf/fonts/type1/public/tex-gyre/qtmri.pfb></
usr/share/texlive/texmf-dist/fonts/type1/public/txfonts/t1xbtt.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/txfonts/t1xbtt.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/txfonts/t1xtt.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/txfonts/t1xtt.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/txfonts/tcxbtt.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/txfo
nts/tcxtt.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb>
Output written on institute-for-disease-modeling-emodpy-malaria.pdf (138 pages,
 579795 bytes).
Transcript written on institute-for-disease-modeling-emodpy-malaria.log.
Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written
Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf'
Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf'
Latexmk: All targets (institute-for-disease-modeling-emodpy-malaria.pdf) are up-to-date