Read the Docs build information Build id: 1580260 Project: institute-for-disease-modeling-emod-hiv Version: latest Commit: 0ab0d8dc6ee5a5c7aebcf168b891738bbf827e88 Date: 2023-07-05T21:04:19.018760Z State: cancelled Success: False [rtd-command-info] start-time: 2023-07-05T21:04:26.292186Z, end-time: 2023-07-05T21:04:43.617067Z, duration: 17, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/EMOD-docs.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.112' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2023-07-05T21:04:44.018718Z, end-time: 2023-07-05T21:04:44.510900Z, duration: 0, exit-code: 0 git checkout --force origin/malaria-ongoing Note: switching to 'origin/malaria-ongoing'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 0ab0d8dc Merge pull request #1733 from KElsaesser-IDM/config-population-batch-updates [rtd-command-info] start-time: 2023-07-05T21:04:44.922025Z, end-time: 2023-07-05T21:04:44.996084Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-07-05T21:04:45.388062Z, end-time: 2023-07-05T21:04:45.446893Z, duration: 0, exit-code: 0 cat .readthedocs.yml # .readthedocs.yml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Build documentation in the docs/ directory with Sphinx sphinx: fail_on_warning: true # Build documentation with MkDocs #mkdocs: # configuration: mkdocs.yml # Optionally build your docs in additional formats such as PDF formats: - htmlzip # Optionally set the version of Python and requirements required to build your docs python: version: 3.7 install: - requirements: requirements.txt # Optionally rank topics in search results, between -10 (lower) and 10 (higher). # 0 is normal rank, not no rank search: ranking: install-overview.html: 3 model-overview.html: 3 faq.html: 2 parameter-overview.html: 2 dev*: -5 [rtd-command-info] start-time: 2023-07-05T21:04:47.811918Z, end-time: 2023-07-05T21:04:52.552915Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2023-07-05T21:04:53.529192Z, end-time: 2023-07-05T21:04:54.707901Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (23.1.2) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (68.0.0) [rtd-command-info] start-time: 2023-07-05T21:04:55.102668Z, end-time: 2023-07-05T21:05:02.068555Z, duration: 6, exit-code: 0 python -m pip install --upgrade --no-cache-dir pillow==5.4.1 mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0 Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 53.9 MB/s eta 0:00:00 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 220.1 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl (13 kB) Collecting commonmark==0.9.1 Downloading commonmark-0.9.1-py2.py3-none-any.whl (51 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 51.1/51.1 kB 160.7 MB/s eta 0:00:00 Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 145.8 MB/s eta 0:00:00 Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.4/6.4 MB 140.4 MB/s eta 0:00:00 Collecting readthedocs-sphinx-ext<2.3 Downloading readthedocs_sphinx_ext-2.2.2-py2.py3-none-any.whl (11 kB) Collecting jinja2<3.1.0 Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.6/133.6 kB 192.9 MB/s eta 0:00:00 Collecting docutils>=0.11 (from recommonmark==0.5.0) Downloading docutils-0.20.1-py3-none-any.whl (572 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 572.7/572.7 kB 221.6 MB/s eta 0:00:00 Collecting six>=1.5 (from sphinx<2) Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting Pygments>=2.0 (from sphinx<2) Downloading Pygments-2.15.1-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 214.6 MB/s eta 0:00:00 Collecting docutils>=0.11 (from recommonmark==0.5.0) Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 575.5/575.5 kB 213.1 MB/s eta 0:00:00 Collecting snowballstemmer>=1.1 (from sphinx<2) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 185.5 MB/s eta 0:00:00 Collecting babel!=2.0,>=1.3 (from sphinx<2) Downloading Babel-2.12.1-py3-none-any.whl (10.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.1/10.1 MB 169.6 MB/s eta 0:00:00 Collecting imagesize (from sphinx<2) Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting requests>=2.0.0 (from sphinx<2) Downloading requests-2.31.0-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.6/62.6 kB 168.7 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx<2) (68.0.0) Collecting packaging (from sphinx<2) Downloading packaging-23.1-py3-none-any.whl (48 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 48.9/48.9 kB 143.5 MB/s eta 0:00:00 Collecting sphinxcontrib-websupport (from sphinx<2) Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting MarkupSafe>=2.0 (from jinja2<3.1.0) Downloading MarkupSafe-2.1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting pytz>=2015.7 (from babel!=2.0,>=1.3->sphinx<2) Downloading pytz-2023.3-py2.py3-none-any.whl (502 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 502.3/502.3 kB 216.8 MB/s eta 0:00:00 Collecting charset-normalizer<4,>=2 (from requests>=2.0.0->sphinx<2) Downloading charset_normalizer-3.1.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (171 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 171.0/171.0 kB 196.4 MB/s eta 0:00:00 Collecting idna<4,>=2.5 (from requests>=2.0.0->sphinx<2) Downloading idna-3.4-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 170.9 MB/s eta 0:00:00 Collecting urllib3<3,>=1.21.1 (from requests>=2.0.0->sphinx<2) Downloading urllib3-2.0.3-py3-none-any.whl (123 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 123.6/123.6 kB 193.0 MB/s eta 0:00:00 Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx<2) Downloading certifi-2023.5.7-py3-none-any.whl (156 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 157.0/157.0 kB 205.6 MB/s eta 0:00:00 Collecting sphinxcontrib-serializinghtml (from sphinxcontrib-websupport->sphinx<2) Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.0/94.0 kB 177.7 MB/s eta 0:00:00 Building wheels for collected packages: mock Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23753 sha256=1e3773e7e6f3c81163dea2ee4f938835d719b7e10ff22c5ed7fb794281d2acff Stored in directory: /tmp/pip-ephem-wheel-cache-6fugikkl/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Successfully built mock Installing collected packages: snowballstemmer, pytz, mock, commonmark, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark Successfully installed MarkupSafe-2.1.3 Pygments-2.15.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.5.7 charset-normalizer-3.1.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.1 pillow-5.4.1 pytz-2023.3 readthedocs-sphinx-ext-2.2.2 recommonmark-0.5.0 requests-2.31.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.0.3 [rtd-command-info] start-time: 2023-07-05T21:05:02.529880Z, end-time: 2023-07-05T21:05:08.535799Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Requirement already satisfied: sphinx-rtd-theme in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (0.4.3) Collecting sphinxcontrib-napoleon~=0.7 (from -r requirements.txt (line 2)) Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from -r requirements.txt (line 3)) (1.8.6) Collecting plantweb~=1.2.1 (from -r requirements.txt (line 4)) Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting numpy~=1.19.1 (from -r requirements.txt (line 5)) Downloading numpy-1.19.5-cp37-cp37m-manylinux2010_x86_64.whl (14.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 14.8/14.8 MB 181.2 MB/s eta 0:00:00 Collecting numpydoc~=1.0.0 (from -r requirements.txt (line 6)) Downloading numpydoc-1.0.0-py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.4/47.4 kB 154.8 MB/s eta 0:00:00 Collecting myst-parser (from -r requirements.txt (line 7)) Downloading myst_parser-1.0.0-py3-none-any.whl (77 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.3/77.3 kB 185.4 MB/s eta 0:00:00 Collecting readthedocs-sphinx-search (from -r requirements.txt (line 8)) Downloading readthedocs_sphinx_search-0.3.1-py3-none-any.whl (21 kB) Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-napoleon~=0.7->-r requirements.txt (line 2)) (1.16.0) Collecting pockets>=0.3 (from sphinxcontrib-napoleon~=0.7->-r requirements.txt (line 2)) Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (3.0.3) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (2.15.1) Requirement already satisfied: docutils<0.18,>=0.11 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (0.17.1) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (2.2.0) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (2.12.1) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (0.7.13) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (1.4.1) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (2.31.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (68.0.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (23.1) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (1.2.4) Collecting markdown-it-py<3.0.0,>=1.0.0 (from myst-parser->-r requirements.txt (line 7)) Downloading markdown_it_py-2.2.0-py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.5/84.5 kB 184.7 MB/s eta 0:00:00 Collecting mdit-py-plugins~=0.3.4 (from myst-parser->-r requirements.txt (line 7)) Downloading mdit_py_plugins-0.3.5-py3-none-any.whl (52 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 52.1/52.1 kB 155.1 MB/s eta 0:00:00 Collecting pyyaml (from myst-parser->-r requirements.txt (line 7)) Downloading PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 596.3/596.3 kB 221.3 MB/s eta 0:00:00 Collecting sphinx (from -r requirements.txt (line 3)) Downloading sphinx-5.3.0-py3-none-any.whl (3.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.2/3.2 MB 193.6 MB/s eta 0:00:00 Collecting typing-extensions (from myst-parser->-r requirements.txt (line 7)) Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) Collecting sphinxcontrib-applehelp (from sphinx->-r requirements.txt (line 3)) Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.2/121.2 kB 199.8 MB/s eta 0:00:00 Collecting sphinxcontrib-devhelp (from sphinx->-r requirements.txt (line 3)) Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 kB 193.1 MB/s eta 0:00:00 Collecting sphinxcontrib-jsmath (from sphinx->-r requirements.txt (line 3)) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx->-r requirements.txt (line 3)) Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.5/100.5 kB 193.0 MB/s eta 0:00:00 Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from sphinx->-r requirements.txt (line 3)) (1.1.5) Collecting sphinxcontrib-qthelp (from sphinx->-r requirements.txt (line 3)) Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.6/90.6 kB 181.1 MB/s eta 0:00:00 Collecting importlib-metadata>=4.8 (from sphinx->-r requirements.txt (line 3)) Downloading importlib_metadata-6.7.0-py3-none-any.whl (22 kB) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r requirements.txt (line 3)) (2023.3) Collecting zipp>=0.5 (from importlib-metadata>=4.8->sphinx->-r requirements.txt (line 3)) Downloading zipp-3.15.0-py3-none-any.whl (6.8 kB) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx->-r requirements.txt (line 3)) (2.1.3) Collecting mdurl~=0.1 (from markdown-it-py<3.0.0,>=1.0.0->myst-parser->-r requirements.txt (line 7)) Downloading mdurl-0.1.2-py3-none-any.whl (10.0 kB) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 3)) (3.1.0) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 3)) (3.4) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 3)) (2.0.3) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-hiv/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r requirements.txt (line 3)) (2023.5.7) Installing collected packages: zipp, typing-extensions, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, readthedocs-sphinx-search, pyyaml, pockets, numpy, mdurl, sphinxcontrib-napoleon, plantweb, markdown-it-py, importlib-metadata, sphinx, mdit-py-plugins, numpydoc, myst-parser Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Successfully installed importlib-metadata-6.7.0 markdown-it-py-2.2.0 mdit-py-plugins-0.3.5 mdurl-0.1.2 myst-parser-1.0.0 numpy-1.19.5 numpydoc-1.0.0 plantweb-1.2.1 pockets-0.9.1 pyyaml-6.0 readthedocs-sphinx-search-0.3.1 sphinx-5.3.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-qthelp-1.0.3 typing-extensions-4.7.1 zipp-3.15.0