Read the Docs build information
Build id: 1564735
Project: institute-for-disease-modeling-emod-api
Version: latest
Commit: d055e0480c83f2a329c746f4b774dcadc126a953
Date: 2023-06-27T18:56:47.207897Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2023-06-27T18:56:54.352328Z, end-time: 2023-06-27T18:56:57.099715Z, duration: 2, exit-code: 0
git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emod-api.git .
Cloning into '.'...
Warning: Permanently added 'github.com,192.30.255.112' (ECDSA) to the list of known hosts.

[rtd-command-info] start-time: 2023-06-27T18:56:57.559662Z, end-time: 2023-06-27T18:56:57.966420Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: switching to 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at d055e04 migration.py from_csv example (#622)

[rtd-command-info] start-time: 2023-06-27T18:56:58.452748Z, end-time: 2023-06-27T18:56:58.521738Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-06-27T18:56:58.912469Z, end-time: 2023-06-27T18:56:59.000627Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# .readthedocs.yml
# Read the Docs configuration file
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details

# Required
version: 2

# Build documentation in the docs/ directory with Sphinx
sphinx:
  configuration: docs/conf.py
  fail_on_warning: true

# Build documentation with MkDocs
#mkdocs:
#  configuration: mkdocs.yml

# Optionally build your docs in additional formats such as PDF
formats:
  - htmlzip
  - pdf

# Optionally set the version of Python and requirements required to build your docs
python:
   version: 3.7
   install:
      - requirements: requirements.txt
      - requirements: docs/requirements.txt
      - method: setuptools
        path: .
   system_packages: true

# Optionally rank topics in search results, between -10 (lower) and 10 (higher).
# 0 is normal rank, not no rank

# search:
#   ranking:

[rtd-command-info] start-time: 2023-06-27T18:57:01.462057Z, end-time: 2023-06-27T18:57:08.333588Z, duration: 6, exit-code: 0
python3.7 -mvirtualenv --system-site-packages $READTHEDOCS_VIRTUALENV_PATH
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2023-06-27T18:57:08.846389Z, end-time: 2023-06-27T18:57:10.874920Z, duration: 2, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (23.1.2)
Collecting setuptools<58.3.0
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Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 68.0.0
    Uninstalling setuptools-68.0.0:
      Successfully uninstalled setuptools-68.0.0
Successfully installed setuptools-58.2.0

[rtd-command-info] start-time: 2023-06-27T18:57:11.329187Z, end-time: 2023-06-27T18:57:20.006319Z, duration: 8, exit-code: 0
python -m pip install --upgrade --no-cache-dir -I pillow==5.4.1 mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0 setuptools<58.3.0
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple
Collecting pillow==5.4.1
  Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
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Collecting mock==1.0.1
  Downloading mock-1.0.1.zip (861 kB)
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  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting alabaster!=0.7.5,<0.8,>=0.7
  Downloading alabaster-0.7.13-py3-none-any.whl (13 kB)
Collecting commonmark==0.9.1
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Collecting recommonmark==0.5.0
  Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB)
Collecting sphinx<2
  Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB)
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Collecting sphinx-rtd-theme<0.5
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Collecting readthedocs-sphinx-ext<2.3
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Collecting setuptools<58.3.0
  Downloading setuptools-58.2.0-py3-none-any.whl (946 kB)
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Collecting docutils>=0.11 (from recommonmark==0.5.0)
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Collecting six>=1.5 (from sphinx<2)
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Collecting Pygments>=2.0 (from sphinx<2)
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Collecting docutils>=0.11 (from recommonmark==0.5.0)
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Collecting snowballstemmer>=1.1 (from sphinx<2)
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Collecting babel!=2.0,>=1.3 (from sphinx<2)
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Collecting imagesize (from sphinx<2)
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Collecting requests>=2.0.0 (from sphinx<2)
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Collecting packaging (from sphinx<2)
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Collecting sphinxcontrib-websupport (from sphinx<2)
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Collecting pytz>=2015.7 (from babel!=2.0,>=1.3->sphinx<2)
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Collecting idna<4,>=2.5 (from requests>=2.0.0->sphinx<2)
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Collecting urllib3<3,>=1.21.1 (from requests>=2.0.0->sphinx<2)
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Building wheels for collected packages: mock
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=5cff25ca77e703e53a8bf6f9824bf92e6b6b39bd1c26a93444228d09ec5c4b32
  Stored in directory: /tmp/pip-ephem-wheel-cache-h443hdv2/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1
Successfully built mock
Installing collected packages: snowballstemmer, pytz, mock, commonmark, urllib3, sphinxcontrib-serializinghtml, six, setuptools, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
matplotlib 3.5.3 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible.
Successfully installed MarkupSafe-2.1.3 Pygments-2.15.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.5.7 charset-normalizer-3.1.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.1 pillow-5.4.1 pytz-2023.3 readthedocs-sphinx-ext-2.2.1 recommonmark-0.5.0 requests-2.31.0 setuptools-58.2.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.0.3

[rtd-command-info] start-time: 2023-06-27T18:57:20.402514Z, end-time: 2023-06-27T18:57:27.483427Z, duration: 7, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements.txt
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple
Requirement already satisfied: numpy!=1.19.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.21.6)
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  Downloading PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB)
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Collecting shapely (from -r requirements.txt (line 5))
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Building wheels for collected packages: prodict
  Building wheel for prodict (setup.py): started
  Building wheel for prodict (setup.py): finished with status 'done'
  Created wheel for prodict: filename=prodict-0.8.18-py3-none-any.whl size=4224 sha256=66b05616c6fa26df34ebc34a91fcc05fe2bd9c8c5af21a54a82b2fffd3f747f8
  Stored in directory: /tmp/pip-ephem-wheel-cache-72_j3nmw/wheels/a8/e6/67/cda708a2cd06853a75a33ecab7ade9eda84e962a7635406c70
Successfully built prodict
Installing collected packages: prodict, parse, threadpoolctl, shapely, pyyaml, pyproj, pillow, lz4, joblib, graphviz, geographiclib, scikit-learn
  Attempting uninstall: pillow
    Found existing installation: Pillow 5.4.1
    Uninstalling Pillow-5.4.1:
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Successfully installed geographiclib-2.0 graphviz-0.20.1 joblib-1.2.0 lz4-4.3.2 parse-1.19.1 pillow-9.5.0 prodict-0.8.18 pyproj-3.2.1 pyyaml-6.0 scikit-learn-1.0.2 shapely-2.0.1 threadpoolctl-3.1.0

[rtd-command-info] start-time: 2023-06-27T18:57:28.180849Z, end-time: 2023-06-27T18:57:33.115331Z, duration: 4, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple
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Installing collected packages: zipp, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pockets, MarkupSafe, docutils, sphinxcontrib-napoleon, plantweb, Jinja2, importlib-metadata, sphinxext.remoteliteralinclude, sphinx, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton
  Attempting uninstall: MarkupSafe
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  Attempting uninstall: docutils
    Found existing installation: docutils 0.17.1
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  Attempting uninstall: Jinja2
    Found existing installation: Jinja2 3.0.3
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  Attempting uninstall: sphinx
    Found existing installation: Sphinx 1.8.6
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  Attempting uninstall: sphinx-rtd-theme
    Found existing installation: sphinx-rtd-theme 0.4.3
    Uninstalling sphinx-rtd-theme-0.4.3:
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Successfully installed Jinja2-2.11.3 MarkupSafe-2.0.1 docutils-0.16 importlib-metadata-6.7.0 plantweb-1.2.1 pockets-0.9.1 sphinx-4.4.0 sphinx-copybutton-0.4.0 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.4.0 zipp-3.15.0

[rtd-command-info] start-time: 2023-06-27T18:57:33.852757Z, end-time: 2023-06-27T18:57:34.939985Z, duration: 1, exit-code: 0
python ./setup.py install --force
running install
running bdist_egg
running egg_info
creating emod_api.egg-info
writing emod_api.egg-info/PKG-INFO
writing dependency_links to emod_api.egg-info/dependency_links.txt
writing requirements to emod_api.egg-info/requires.txt
writing top-level names to emod_api.egg-info/top_level.txt
writing manifest file 'emod_api.egg-info/SOURCES.txt'
reading manifest file 'emod_api.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no directories found matching 'emod_api/tests/data/*'
warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*'
adding license file 'LICENSE'
writing manifest file 'emod_api.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
creating build/lib/examples
copying examples/some_config_i_found.py -> build/lib/examples
copying examples/write_config_from_default_and_params.py -> build/lib/examples
copying examples/serialized_file_mc_to_sc.py -> build/lib/examples
copying examples/intervention_from_schema.py -> build/lib/examples
copying examples/spatial_report.py -> build/lib/examples
copying examples/migration.py -> build/lib/examples
copying examples/weather_file.py -> build/lib/examples
copying examples/property_report_to_csv.py -> build/lib/examples
copying examples/__init__.py -> build/lib/examples
copying examples/insetchart.py -> build/lib/examples
copying examples/default_from_schema.py -> build/lib/examples
creating build/lib/emod_api
copying emod_api/__main__.py -> build/lib/emod_api
copying emod_api/peek_camp.py -> build/lib/emod_api
copying emod_api/campaign.py -> build/lib/emod_api
copying emod_api/__init__.py -> build/lib/emod_api
copying emod_api/schema_to_class.py -> build/lib/emod_api
copying emod_api/multidim_plotter.py -> build/lib/emod_api
creating build/lib/emod_api/weather
copying emod_api/weather/weather.py -> build/lib/emod_api/weather
copying emod_api/weather/__main__.py -> build/lib/emod_api/weather
copying emod_api/weather/__init__.py -> build/lib/emod_api/weather
creating build/lib/emod_api/schema
copying emod_api/schema/__main__.py -> build/lib/emod_api/schema
copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema
copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema
copying emod_api/schema/__init__.py -> build/lib/emod_api/schema
creating build/lib/emod_api/channelreports
copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports
copying emod_api/channelreports/plot_icj_means.py -> build/lib/emod_api/channelreports
copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports
copying emod_api/channelreports/plot_prop_report.py -> build/lib/emod_api/channelreports
copying emod_api/channelreports/icj_to_csv.py -> build/lib/emod_api/channelreports
copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports
copying emod_api/channelreports/utils.py -> build/lib/emod_api/channelreports
creating build/lib/emod_api/demographics
copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics
copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics
copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics
copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics
copying emod_api/demographics/PreDefinedDistributions.py -> build/lib/emod_api/demographics
copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics
copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics
copying emod_api/demographics/Updateable.py -> build/lib/emod_api/demographics
copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics
copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics
copying emod_api/demographics/PropertiesAndAttributes.py -> build/lib/emod_api/demographics
copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics
copying emod_api/demographics/grid_construction.py -> build/lib/emod_api/demographics
creating build/lib/emod_api/spatialreports
copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports
copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports
copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports
copying emod_api/spatialreports/plot_spat_means.py -> build/lib/emod_api/spatialreports
creating build/lib/emod_api/serialization
copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization
copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization
copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization
copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization
copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization
copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization
copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization
creating build/lib/emod_api/config
copying emod_api/config/from_overrides.py -> build/lib/emod_api/config
copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config
copying emod_api/config/__main__.py -> build/lib/emod_api/config
copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config
copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config
copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config
copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config
copying emod_api/config/__init__.py -> build/lib/emod_api/config
copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config
copying emod_api/config/from_schema.py -> build/lib/emod_api/config
copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config
creating build/lib/emod_api/legacy
copying emod_api/legacy/plotAllCharts.py -> build/lib/emod_api/legacy
copying emod_api/legacy/__init__.py -> build/lib/emod_api/legacy
creating build/lib/emod_api/migration
copying emod_api/migration/__main__.py -> build/lib/emod_api/migration
copying emod_api/migration/migration.py -> build/lib/emod_api/migration
copying emod_api/migration/__init__.py -> build/lib/emod_api/migration
creating build/lib/emod_api/interventions
copying emod_api/interventions/common.py -> build/lib/emod_api/interventions
copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions
copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions
copying emod_api/interventions/ccdl.py -> build/lib/emod_api/interventions
copying emod_api/interventions/ccdl_viz.py -> build/lib/emod_api/interventions
copying emod_api/interventions/migration.py -> build/lib/emod_api/interventions
copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions
copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions
copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions
copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions
copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions
creating build/lib/emod_api/tabularoutput
copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput
copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput
creating build/lib/emod_api/migration/client
copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client
copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client
creating build/lib/tests
creating build/lib/tests/unittests
copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests
copying tests/unittests/test_properties_and_attributes.py -> build/lib/tests/unittests
copying tests/unittests/test_version.py -> build/lib/tests/unittests
copying tests/unittests/__init__.py -> build/lib/tests/unittests
copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests
copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests
copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/examples
copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples
copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples
copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples
copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples
copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples
copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples
copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples
copying build/lib/examples/property_report_to_csv.py -> build/bdist.linux-x86_64/egg/examples
copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples
copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples
copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples
creating build/bdist.linux-x86_64/egg/emod_api
creating build/bdist.linux-x86_64/egg/emod_api/weather
copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather
copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather
copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather
creating build/bdist.linux-x86_64/egg/emod_api/schema
copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema
copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema
copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema
copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema
creating build/bdist.linux-x86_64/egg/emod_api/channelreports
copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports
copying build/lib/emod_api/channelreports/plot_icj_means.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports
copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports
copying build/lib/emod_api/channelreports/plot_prop_report.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports
copying build/lib/emod_api/channelreports/icj_to_csv.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports
copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports
copying build/lib/emod_api/channelreports/utils.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports
copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api
copying build/lib/emod_api/peek_camp.py -> build/bdist.linux-x86_64/egg/emod_api
creating build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/PreDefinedDistributions.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/Updateable.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/PropertiesAndAttributes.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
copying build/lib/emod_api/demographics/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics
creating build/bdist.linux-x86_64/egg/emod_api/spatialreports
copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports
copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports
copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports
copying build/lib/emod_api/spatialreports/plot_spat_means.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports
copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api
creating build/bdist.linux-x86_64/egg/emod_api/serialization
copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization
copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization
copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization
copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization
copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization
copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization
copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization
copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api
creating build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config
copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api
creating build/bdist.linux-x86_64/egg/emod_api/legacy
copying build/lib/emod_api/legacy/plotAllCharts.py -> build/bdist.linux-x86_64/egg/emod_api/legacy
copying build/lib/emod_api/legacy/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/legacy
copying build/lib/emod_api/multidim_plotter.py -> build/bdist.linux-x86_64/egg/emod_api
creating build/bdist.linux-x86_64/egg/emod_api/migration
copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration
copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration
copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration
creating build/bdist.linux-x86_64/egg/emod_api/migration/client
copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client
copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client
creating build/bdist.linux-x86_64/egg/emod_api/interventions
copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions
copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions
copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions
copying build/lib/emod_api/interventions/ccdl.py -> build/bdist.linux-x86_64/egg/emod_api/interventions
copying build/lib/emod_api/interventions/ccdl_viz.py -> build/bdist.linux-x86_64/egg/emod_api/interventions
copying build/lib/emod_api/interventions/migration.py -> build/bdist.linux-x86_64/egg/emod_api/interventions
copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions
copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions
copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions
copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions
copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions
creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput
copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput
copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput
creating build/bdist.linux-x86_64/egg/tests
creating build/bdist.linux-x86_64/egg/tests/unittests
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copying build/lib/tests/unittests/test_properties_and_attributes.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests
copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests
byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/examples/property_report_to_csv.py to property_report_to_csv.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_icj_means.py to plot_icj_means.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_prop_report.py to plot_prop_report.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/icj_to_csv.py to icj_to_csv.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/utils.py to utils.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/peek_camp.py to peek_camp.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PreDefinedDistributions.py to PreDefinedDistributions.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Updateable.py to Updateable.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PropertiesAndAttributes.py to PropertiesAndAttributes.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/grid_construction.py to grid_construction.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/plot_spat_means.py to plot_spat_means.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-37.pyc
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byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-37.pyc
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byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-37.pyc
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byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl.py to ccdl.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl_viz.py to ccdl_viz.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/migration.py to migration.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_properties_and_attributes.py to test_properties_and_attributes.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-37.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
emod_api.config.__pycache__.from_poi_and_binary.cpython-37: module references __file__
emod_api.serialization.__pycache__.dtkFileTools.cpython-37: module references __file__
emod_api.serialization.__pycache__.dtkFileUtility.cpython-37: module references __file__
emod_api.spatialreports.__pycache__.__main__.cpython-37: module references __file__
examples.__pycache__.insetchart.cpython-37: module references __file__
examples.__pycache__.property_report_to_csv.cpython-37: module references __file__
examples.__pycache__.spatial_report.cpython-37: module references __file__
examples.__pycache__.weather_file.cpython-37: module references __file__
creating dist
creating 'dist/emod_api-1.28.9-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing emod_api-1.28.9-py3.7.egg
creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.28.9-py3.7.egg
Extracting emod_api-1.28.9-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Adding emod-api 1.28.9 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.28.9-py3.7.egg
Processing dependencies for emod-api==1.28.9
Searching for matplotlib==3.5.3
Best match: matplotlib 3.5.3
Adding matplotlib 3.5.3 to easy-install.pth file

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for parse==1.19.1
Best match: parse 1.19.1
Adding parse 1.19.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for graphviz==0.20.1
Best match: graphviz 0.20.1
Adding graphviz 0.20.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for prodict==0.8.18
Best match: prodict 0.8.18
Adding prodict 0.8.18 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for lz4==4.3.2
Best match: lz4 4.3.2
Adding lz4 4.3.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for scikit-learn==1.0.2
Best match: scikit-learn 1.0.2
Adding scikit-learn 1.0.2 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for geographiclib==2.0
Best match: geographiclib 2.0
Adding geographiclib 2.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for pyproj==3.2.1
Best match: pyproj 3.2.1
Adding pyproj 3.2.1 to easy-install.pth file
Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for shapely==2.0.1
Best match: shapely 2.0.1
Adding shapely 2.0.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for scipy==1.7.3
Best match: scipy 1.7.3
scipy 1.7.3 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for pandas==1.3.5
Best match: pandas 1.3.5
pandas 1.3.5 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for PyYAML==6.0
Best match: PyYAML 6.0
Adding PyYAML 6.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for numpy==1.21.6
Best match: numpy 1.21.6
numpy 1.21.6 is already the active version in easy-install.pth
Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin
Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin
Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for Pillow==9.5.0
Best match: Pillow 9.5.0
Adding Pillow 9.5.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for python-dateutil==2.8.2
Best match: python-dateutil 2.8.2
python-dateutil 2.8.2 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for kiwisolver==1.4.4
Best match: kiwisolver 1.4.4
kiwisolver 1.4.4 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for cycler==0.11.0
Best match: cycler 0.11.0
cycler 0.11.0 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for packaging==23.1
Best match: packaging 23.1
Adding packaging 23.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for pyparsing==3.0.9
Best match: pyparsing 3.0.9
pyparsing 3.0.9 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for fonttools==4.38.0
Best match: fonttools 4.38.0
fonttools 4.38.0 is already the active version in easy-install.pth
Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin
Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin
Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin
Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for threadpoolctl==3.1.0
Best match: threadpoolctl 3.1.0
Adding threadpoolctl 3.1.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for joblib==1.2.0
Best match: joblib 1.2.0
Adding joblib 1.2.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for certifi==2023.5.7
Best match: certifi 2023.5.7
Adding certifi 2023.5.7 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for pytz==2023.3
Best match: pytz 2023.3
Adding pytz 2023.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for six==1.16.0
Best match: six 1.16.0
Adding six 1.16.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages
Searching for typing-extensions==4.5.0
Best match: typing-extensions 4.5.0
typing-extensions 4.5.0 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Finished processing dependencies for emod-api==1.28.9

[rtd-command-info] start-time: 2023-06-27T18:57:40.907919Z, end-time: 2023-06-27T18:57:40.963695Z, duration: 0, exit-code: 0
cat docs/conf.py
# -*- coding: utf-8 -*-
#
# Sphinx Demo docs build configuration file, created by
# sphinx-quickstart on Fri Aug 26 16:52:16 2016.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# docs root, use os.path.abspath to make it absolute, like shown here.
#
import os
import subprocess
import sys
import sphinx_rtd_theme
import configparser
from datetime import datetime

if sys.platform in ["linux", "darwin"]:
    subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__)))
else:
    subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__)))

# Rename "emod-api" to "API reference"
filename = 'modules.rst' # This must match the Makefile
with open(filename) as f: # Read existing file
    lines = f.readlines()
lines[0] = "API reference\n" # Blast away the existing heading and replace with this
lines[1] = "=============\n" # Ensure the heading is the right length
with open(filename, "w") as f: # Write new file
    f.writelines(lines)

# -- General configuration ------------------------------------------------

tags.add('emodapi')

# If your docs needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.mathjax',
    'sphinx.ext.githubpages',
    'sphinx.ext.autodoc',
    'sphinxcontrib.napoleon',
    'sphinx.ext.todo',
    'plantweb.directive',
    'sphinxcontrib.programoutput',
    'sphinx_copybutton',
    'sphinx.ext.intersphinx',
    'sphinxext.remoteliteralinclude',
    'sphinx.ext.viewcode'
]

plantuml = 'plantweb'

autodoc_default_options = {
    'member-order': 'bysource',
    'members': None,
    'exclude-members': '__all__'
}

autodoc_mock_imports = ['emod_api.dtk_tools']

napoleon_google_docstring = True
# napoleon_numpy_docstring = True

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The encoding of source files.
#
# source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'emod-api'
copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.'
author = u'Institute for Disease Modeling'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
#current_path = os.path.dirname(__file__)
#version_path = os.path.join(current_path, '..', '.bumpversion.cfg')
#config = configparser.ConfigParser()
#config.read(version_path)

#version = config['bumpversion']['current_version']
# The full version, including alpha/beta/rc tags.
# release = u'1.0'

# The language for content autogenerated by Sphinx. Refer to docs
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#
# today = ''
#
# Else, today_fmt is used as the format for a strftime call.
#
# today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The reST default role (used for this markup: `text`) to use for all
# documents.
#
# default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#
# add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#
# add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#
# show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
# keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False

# RST epilog is added to the end of every topic. Useful for replace
# directives to use across the docset.

rst_epilog = "\n.. include:: /variables.txt"

# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the docs for
# a list of builtin themes.
#
html_theme = 'sphinx_rtd_theme'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# docs.
# #
# html_theme_options = {
# }

# Add any paths that contain custom themes here, relative to this directory.
html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# The name for this set of Sphinx documents.
# "<project> v<release> docs" by default.
#
# html_title = u'Sphinx Demo v1.0'

# A shorter title for the navigation bar.  Default is the same as html_title.
#
# html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#
html_logo = "images/IDM_white.png"

# The name of an image file (relative to this directory) to use as a favicon of
# the docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#
html_favicon = "images/favicon.ico"

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

html_context = {
    'css_files': [
        '_static/theme_overrides.css',
        '_static/copy_button.css'
        ]
}

html_js_files = ['show_block_by_os.js']

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the docs.
#
# html_extra_path = []

# If not None, a 'Last updated on:' timestamp is inserted at every page
# bottom, using the given strftime format.
# The empty string is equivalent to '%b %d, %Y'.
#
# html_last_updated_fmt = None

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#
# html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#
# html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#
# html_additional_pages = {}

# If false, no module index is generated.
#
# html_domain_indices = True

# If false, no index is generated.
#
# html_use_index = True

# If true, the index is split into individual pages for each letter.
#
# html_split_index = False

# If true, links to the reST sources are added to the pages.
#
html_show_sourcelink = False

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#
html_show_sphinx = False

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#
# html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#
html_use_opensearch = 'www.idmod.org/docs/'

# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh'
#
# html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# 'ja' uses this config value.
# 'zh' user can custom change `jieba` dictionary path.
#
# html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#
# html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'EMOD-API'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'emod-api-docs.tex', u'emod-api',
     u'Institute for Disease Modeling', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#
# latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#
# latex_use_parts = False

# If true, show page references after internal links.
#
# latex_show_pagerefs = False

# If true, show URL addresses after external links.
#
# latex_show_urls = False

# Documents to append as an appendix to all manuals.
#
# latex_appendices = []

# It false, will not define \strong, \code,     itleref, \crossref ... but only
# \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added
# packages.
#
# latex_keep_old_macro_names = True

# If false, no module index is generated.
#
# latex_domain_indices = True


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'emod-api-docs', u'emod-api',
     [author], 1)
]

# If true, show URL addresses after external links.
#
man_show_urls = True

# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'emod-api-docs', u'emod-api',
     author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.',
     'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#
# texinfo_appendices = []

# If false, no module index is generated.
#
# texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#
# texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#
# texinfo_no_detailmenu = False


# Example configuration for intersphinx: refer to the Python standard library.
intersphinx_mapping = {'python': ('https://docs.python.org/3', None),
                       'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None),
                       'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None),
                       'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None)
                       }






###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#
# Note: this file shouldn't rely on extra dependencies.

import importlib
import sys
import os.path

# Borrowed from six.
PY3 = sys.version_info[0] == 3
string_types = str if PY3 else basestring

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}


# This following legacy behavior will gradually be sliced out until its deprecated and removed.
# Skipped for Sphinx 6+
# Skipped by internal Feature flag SKIP_SPHINX_HTML_THEME_PATH
# Skipped by all new projects since SKIP_SPHINX_HTML_THEME_PATH's introduction (jan 2023)
if (
        using_rtd_theme
        and version_info < (6,0)
        and not False
    ):
    theme = importlib.import_module('sphinx_rtd_theme')
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

# Define websupport2_base_url and websupport2_static_url
if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://assets.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://assets.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'proxied_static_path': "/_/static/",
    'versions': [
    ("latest", "/en/latest/"),
    ("v2.0.1", "/en/v2.0.1/"),
    ("v1.28.5", "/en/v1.28.5/"),
    ("v1.28.1", "/en/v1.28.1/"),
    ("v1.27.4", "/en/v1.27.4/"),
    ("v1.27.1", "/en/v1.27.1/"),
    ("v1.26.1", "/en/v1.26.1/"),
    ("v1.25.1", "/en/v1.25.1/"),
    ("v1.24.11", "/en/v1.24.11/"),
    ("v1.24.8", "/en/v1.24.8/"),
    ("v1.24.1", "/en/v1.24.1/"),
    ("v1.23.2", "/en/v1.23.2/"),
    ("v1.23.1", "/en/v1.23.1/"),
    ("v1.22.11", "/en/v1.22.11/"),
    ("v1.22.10", "/en/v1.22.10/"),
    ("v1.22.9", "/en/v1.22.9/"),
    ("v1.22.1", "/en/v1.22.1/"),
    ("v1.22.0", "/en/v1.22.0/"),
    ("v1.21.1", "/en/v1.21.1/"),
    ("v1.20.2", "/en/v1.20.2/"),
    ("v1.20.1", "/en/v1.20.1/"),
    ("v1.19.13", "/en/v1.19.13/"),
    ("v1.19.2", "/en/v1.19.2/"),
    ("v1.18.1", "/en/v1.18.1/"),
    ("v1.17.4", "/en/v1.17.4/"),
    ("v1.17.3", "/en/v1.17.3/"),
    ("v1.17.2", "/en/v1.17.2/"),
    ("v1.16.10", "/en/v1.16.10/"),
    ("v1.16.5", "/en/v1.16.5/"),
    ("v1.16.2", "/en/v1.16.2/"),
    ("v1.15.6", "/en/v1.15.6/"),
    ("v1.15.4", "/en/v1.15.4/"),
    ("v1.15.1", "/en/v1.15.1/"),
    ("v1.14.7", "/en/v1.14.7/"),
    ("v1.14.1", "/en/v1.14.1/"),
    ("v1.13.1", "/en/v1.13.1/"),
    ("v1.12.1", "/en/v1.12.1/"),
    ("v1.11.7", "/en/v1.11.7/"),
    ("v1.11.4", "/en/v1.11.4/"),
    ("v1.11.0", "/en/v1.11.0/"),
    ("v1.10.8", "/en/v1.10.8/"),
    ("v1.10.6", "/en/v1.10.6/"),
    ("v1.10.5", "/en/v1.10.5/"),
    ("v1.10.3", "/en/v1.10.3/"),
    ("v1.10.2", "/en/v1.10.2/"),
    ("v1.9.2", "/en/v1.9.2/"),
    ("v1.9.1", "/en/v1.9.1/"),
    ("v1.8.9", "/en/v1.8.9/"),
    ("v1.8.8", "/en/v1.8.8/"),
    ("v1.8.6", "/en/v1.8.6/"),
    ("v1.8.2", "/en/v1.8.2/"),
    ("v1.7.5", "/en/v1.7.5/"),
    ("v1.7.4", "/en/v1.7.4/"),
    ("v1.7.1", "/en/v1.7.1/"),
    ("v1.6.3", "/en/v1.6.3/"),
    ("v1.5.1", "/en/v1.5.1/"),
    ("v1.5.0", "/en/v1.5.0/"),
    ],
    'downloads': [ 
    ("pdf", "//docs.idmod.org/_/downloads/emod-api/en/latest/pdf/"),
    ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'institute-for-disease-modeling-emod-api',
    'name': u'emod-api',
    'rtd_language': u'en',
    'programming_language': u'py',
    'canonical_url': '',
    'analytics_code': 'G-SVDSQH04EM',
    'single_version': False,
    'conf_py_path': '/docs/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'InstituteforDiseaseModeling',
    'proxied_api_host': '/_',
    'github_repo': 'emod-api',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': 'G-SVDSQH04EM',
    'global_analytics_code': 'UA-17997319-2',
    'commit': 'd055e048',
}

# For sphinx >=1.8 we can use html_baseurl to set the canonical URL.
# https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl
if version_info >= (1, 8):
    if not globals().get('html_baseurl'):
        html_baseurl = context['canonical_url']
    context['canonical_url'] = None





if 'html_context' in globals():
    for key in context:
        if key not in html_context:
            html_context[key] = context[key]
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")
    readthedocs_vcs_url = 'None'
    readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/1564735/'

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2023-06-27T18:57:41.683058Z, end-time: 2023-06-27T18:59:00.732646Z, duration: 79, exit-code: 0
python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html
Running Sphinx v4.4.0
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no display found. Using non-interactive Agg backend
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writing additional pages... search opensearch done
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copying static files... done
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build succeeded.

The HTML pages are in ../_readthedocs/html.
Updating searchtools for Read the Docs search...

[rtd-command-info] start-time: 2023-06-27T18:59:01.273623Z, end-time: 2023-06-27T18:59:14.072875Z, duration: 12, exit-code: 0
python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip
Running Sphinx v4.4.0
loading translations [en]... done
making output directory... done
loading intersphinx inventory from https://docs.python.org/3/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv...
building [mo]: targets for 0 po files that are out of date
building [readthedocssinglehtmllocalmedia]: all documents
updating environment: [new config] 70 added, 0 changed, 0 removed
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emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema.
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assembling single document... installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.channelreports.icj_to_csv emod_api.channelreports.plot_icj_means emod_api.channelreports.plot_prop_report emod_api.channelreports.utils emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.legacy emod_api.legacy.plotAllCharts emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.plot_spat_means emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.multidim_plotter emod_api.peek_camp emod_api.schema_to_class glossary plotters done
writing... done
writing additional files...  opensearchdone
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copying static files... done
copying extra files... done
dumping object inventory... done
build succeeded.

The HTML page is in ../_readthedocs/htmlzip.
Updating searchtools for Read the Docs search...

[rtd-command-info] start-time: 2023-06-27T18:59:15.386849Z, end-time: 2023-06-27T18:59:27.938741Z, duration: 12, exit-code: 0
python -m sphinx -T -E -b latex -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/pdf
Running Sphinx v4.4.0
loading translations [en]... done
making output directory... done
loading intersphinx inventory from https://docs.python.org/3/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv...
loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv...
building [mo]: targets for 0 po files that are out of date
building [latex]: all documents
updating environment: [new config] 70 added, 0 changed, 0 removed
reading sources... [  1%] emod_api
reading sources... [  2%] emod_api.campaign
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looking for now-outdated files... none found
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processing emod-api-docs.tex... index installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.channelreports.icj_to_csv emod_api.channelreports.plot_icj_means emod_api.channelreports.plot_prop_report emod_api.channelreports.utils emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.legacy emod_api.legacy.plotAllCharts emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.plot_spat_means emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.multidim_plotter emod_api.peek_camp emod_api.schema_to_class glossary plotters 
resolving references...
done
writing... done
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copying TeX support files... copying TeX support files...
done
build succeeded.

The LaTeX files are in ../_readthedocs/pdf.
Run 'make' in that directory to run these through (pdf)latex
(use `make latexpdf' here to do that automatically).
WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/latest/_readthedocs/pdf/_static/searchtools.js