Read the Docs build information Build id: 1525760 Project: institute-for-disease-modeling-emod-api Version: latest Commit: dc982307bee8ac2e41179de4d2527a72195d0c33 Date: 2023-06-08T19:04:21.430264Z State: finished Success: True [rtd-command-info] start-time: 2023-06-08T19:05:08.687027Z, end-time: 2023-06-08T19:05:11.000511Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emod-api.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.113' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2023-06-08T19:05:11.560096Z, end-time: 2023-06-08T19:05:12.016278Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: switching to 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at dc98230 Adding existing plotAllCharts.py script under legacy. (#623) [rtd-command-info] start-time: 2023-06-08T19:05:12.329841Z, end-time: 2023-06-08T19:05:12.423235Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-06-08T19:05:13.922864Z, end-time: 2023-06-08T19:05:20.194799Z, duration: 6, exit-code: 0 python3.7 -mvirtualenv --system-site-packages $READTHEDOCS_VIRTUALENV_PATH Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2023-06-08T19:05:20.388902Z, end-time: 2023-06-08T19:05:22.571011Z, duration: 2, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (23.1.2) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 26.0 MB/s eta 0:00:00 Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 67.8.0 Uninstalling setuptools-67.8.0: Successfully uninstalled setuptools-67.8.0 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2023-06-08T19:05:22.792171Z, end-time: 2023-06-08T19:05:31.973604Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I pillow==5.4.1 mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0 setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 44.6 MB/s eta 0:00:00 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 214.0 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl (13 kB) Collecting commonmark==0.9.1 Downloading commonmark-0.9.1-py2.py3-none-any.whl (51 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 51.1/51.1 kB 156.1 MB/s eta 0:00:00 Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 179.7 MB/s eta 0:00:00 Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.4/6.4 MB 175.6 MB/s eta 0:00:00 Collecting readthedocs-sphinx-ext<2.3 Downloading readthedocs_sphinx_ext-2.2.1-py2.py3-none-any.whl (11 kB) Collecting jinja2<3.1.0 Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.6/133.6 kB 193.1 MB/s eta 0:00:00 Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 223.7 MB/s eta 0:00:00 Collecting docutils>=0.11 (from recommonmark==0.5.0) Downloading docutils-0.20.1-py3-none-any.whl (572 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 572.7/572.7 kB 220.1 MB/s eta 0:00:00 Collecting six>=1.5 (from sphinx<2) Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting Pygments>=2.0 (from sphinx<2) Downloading Pygments-2.15.1-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 225.3 MB/s eta 0:00:00 Collecting docutils>=0.11 (from recommonmark==0.5.0) Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 575.5/575.5 kB 218.9 MB/s eta 0:00:00 Collecting snowballstemmer>=1.1 (from sphinx<2) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 180.1 MB/s eta 0:00:00 Collecting babel!=2.0,>=1.3 (from sphinx<2) Downloading Babel-2.12.1-py3-none-any.whl (10.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.1/10.1 MB 186.8 MB/s eta 0:00:00 Collecting imagesize (from sphinx<2) Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting requests>=2.0.0 (from sphinx<2) Downloading requests-2.31.0-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.6/62.6 kB 167.4 MB/s eta 0:00:00 Collecting packaging (from sphinx<2) Downloading packaging-23.1-py3-none-any.whl (48 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 48.9/48.9 kB 155.9 MB/s eta 0:00:00 Collecting sphinxcontrib-websupport (from sphinx<2) Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting MarkupSafe>=2.0 (from jinja2<3.1.0) Downloading MarkupSafe-2.1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting pytz>=2015.7 (from babel!=2.0,>=1.3->sphinx<2) Downloading pytz-2023.3-py2.py3-none-any.whl (502 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 502.3/502.3 kB 212.1 MB/s eta 0:00:00 Collecting charset-normalizer<4,>=2 (from requests>=2.0.0->sphinx<2) Downloading charset_normalizer-3.1.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (171 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 171.0/171.0 kB 203.8 MB/s eta 0:00:00 Collecting idna<4,>=2.5 (from requests>=2.0.0->sphinx<2) Downloading idna-3.4-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 165.5 MB/s eta 0:00:00 Collecting urllib3<3,>=1.21.1 (from requests>=2.0.0->sphinx<2) Downloading urllib3-2.0.3-py3-none-any.whl (123 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 123.6/123.6 kB 176.1 MB/s eta 0:00:00 Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx<2) Downloading certifi-2023.5.7-py3-none-any.whl (156 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 157.0/157.0 kB 204.0 MB/s eta 0:00:00 Collecting sphinxcontrib-serializinghtml (from sphinxcontrib-websupport->sphinx<2) Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.0/94.0 kB 181.6 MB/s eta 0:00:00 Building wheels for collected packages: mock Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=4c4087adb5597a2ef6d5460a32a83805d8fc84f2ce3f68dcb4251fb1bb055d86 Stored in directory: /tmp/pip-ephem-wheel-cache-tzq9lywd/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Successfully built mock Installing collected packages: snowballstemmer, pytz, mock, commonmark, urllib3, sphinxcontrib-serializinghtml, six, setuptools, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.5.3 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. Successfully installed MarkupSafe-2.1.3 Pygments-2.15.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.5.7 charset-normalizer-3.1.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.1 pillow-5.4.1 pytz-2023.3 readthedocs-sphinx-ext-2.2.1 recommonmark-0.5.0 requests-2.31.0 setuptools-58.2.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.0.3 [rtd-command-info] start-time: 2023-06-08T19:05:32.190078Z, end-time: 2023-06-08T19:05:41.042767Z, duration: 8, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: numpy!=1.19.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 1)) (1.21.6) Collecting pyyaml (from -r requirements.txt (line 2)) Downloading PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 596.3/596.3 kB 17.3 MB/s eta 0:00:00 Requirement already satisfied: pandas in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 3)) (1.3.5) Requirement already satisfied: scipy in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 4)) (1.7.3) Collecting shapely (from -r requirements.txt (line 5)) Downloading shapely-2.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.3/2.3 MB 148.8 MB/s eta 0:00:00 Collecting pyproj (from -r requirements.txt (line 6)) Downloading pyproj-3.2.1-cp37-cp37m-manylinux2010_x86_64.whl (6.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.3/6.3 MB 135.8 MB/s eta 0:00:00 Collecting geographiclib (from -r requirements.txt (line 7)) Downloading geographiclib-2.0-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.3/40.3 kB 108.5 MB/s eta 0:00:00 Collecting scikit-learn (from -r requirements.txt (line 8)) Downloading scikit_learn-1.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (24.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 24.8/24.8 MB 177.8 MB/s eta 0:00:00 Collecting lz4 (from -r requirements.txt (line 9)) Downloading lz4-4.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 221.8 MB/s eta 0:00:00 Collecting prodict (from -r requirements.txt (line 10)) Downloading prodict-0.8.18.tar.gz (4.2 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting graphviz (from -r requirements.txt (line 11)) Downloading graphviz-0.20.1-py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.0/47.0 kB 123.1 MB/s eta 0:00:00 Collecting parse (from -r requirements.txt (line 12)) Downloading parse-1.19.0.tar.gz (30 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: matplotlib in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from -r requirements.txt (line 13)) (3.5.3) Requirement already satisfied: python-dateutil>=2.7.3 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2.8.2) Requirement already satisfied: pytz>=2017.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 3)) (2023.3) Requirement already satisfied: certifi in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from pyproj->-r requirements.txt (line 6)) (2023.5.7) Collecting joblib>=0.11 (from scikit-learn->-r requirements.txt (line 8)) Downloading joblib-1.2.0-py3-none-any.whl (297 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 298.0/298.0 kB 195.5 MB/s eta 0:00:00 Collecting threadpoolctl>=2.0.0 (from scikit-learn->-r requirements.txt (line 8)) Downloading threadpoolctl-3.1.0-py3-none-any.whl (14 kB) Requirement already satisfied: cycler>=0.10 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from matplotlib->-r requirements.txt (line 13)) (0.11.0) Requirement already satisfied: fonttools>=4.22.0 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from matplotlib->-r requirements.txt (line 13)) (4.38.0) Requirement already satisfied: kiwisolver>=1.0.1 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from matplotlib->-r requirements.txt (line 13)) (1.4.4) Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from matplotlib->-r requirements.txt (line 13)) (23.1) Collecting pillow>=6.2.0 (from matplotlib->-r requirements.txt (line 13)) Downloading Pillow-9.5.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.3/3.3 MB 195.7 MB/s eta 0:00:00 Requirement already satisfied: pyparsing>=2.2.1 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from matplotlib->-r requirements.txt (line 13)) (3.0.9) Requirement already satisfied: typing-extensions in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from kiwisolver>=1.0.1->matplotlib->-r requirements.txt (line 13)) (4.5.0) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from python-dateutil>=2.7.3->pandas->-r requirements.txt (line 3)) (1.16.0) Building wheels for collected packages: prodict, parse Building wheel for prodict (setup.py): started Building wheel for prodict (setup.py): finished with status 'done' Created wheel for prodict: filename=prodict-0.8.18-py3-none-any.whl size=4224 sha256=f152370dba4f3eff88f288d973dc995965e435d38063be4159c687d49bd20f23 Stored in directory: /tmp/pip-ephem-wheel-cache-s9r21xaf/wheels/a8/e6/67/cda708a2cd06853a75a33ecab7ade9eda84e962a7635406c70 Building wheel for parse (setup.py): started Building wheel for parse (setup.py): finished with status 'done' Created wheel for parse: filename=parse-1.19.0-py3-none-any.whl size=24591 sha256=1f165abcb5d988ed8e317d93cfada9287075ed12950b64e26036c52ae427e869 Stored in directory: /tmp/pip-ephem-wheel-cache-s9r21xaf/wheels/9c/aa/cc/f2228050ccb40f22144b073f15a2c84f11204f29fc0dce028e Successfully built prodict parse Installing collected packages: prodict, parse, threadpoolctl, shapely, pyyaml, pyproj, pillow, lz4, joblib, graphviz, geographiclib, scikit-learn Attempting uninstall: pillow Found existing installation: Pillow 5.4.1 Uninstalling Pillow-5.4.1: Successfully uninstalled Pillow-5.4.1 Successfully installed geographiclib-2.0 graphviz-0.20.1 joblib-1.2.0 lz4-4.3.2 parse-1.19.0 pillow-9.5.0 prodict-0.8.18 pyproj-3.2.1 pyyaml-6.0 scikit-learn-1.0.2 shapely-2.0.1 threadpoolctl-3.1.0 [rtd-command-info] start-time: 2023-06-08T19:05:41.403630Z, end-time: 2023-06-08T19:05:46.596646Z, duration: 5, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting sphinx-rtd-theme~=0.5.0 (from -r docs/requirements.txt (line 1)) Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.1/9.1 MB 99.4 MB/s eta 0:00:00 Collecting sphinxcontrib-napoleon~=0.7 (from -r docs/requirements.txt (line 2)) Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=4.4.0 (from -r docs/requirements.txt (line 3)) Downloading Sphinx-4.4.0-py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 196.0 MB/s eta 0:00:00 Collecting plantweb~=1.2.1 (from -r docs/requirements.txt (line 4)) Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinxcontrib-programoutput~=0.16 (from -r docs/requirements.txt (line 5)) Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting sphinxext.remoteliteralinclude (from -r docs/requirements.txt (line 6)) Downloading sphinxext_remoteliteralinclude-0.4.0-py3-none-any.whl (6.4 kB) Collecting sphinx-copybutton~=0.4.0 (from -r docs/requirements.txt (line 7)) Downloading sphinx_copybutton-0.4.0-py3-none-any.whl (12 kB) Collecting docutils<0.17 (from sphinx-rtd-theme~=0.5.0->-r docs/requirements.txt (line 1)) Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 548.2/548.2 kB 210.9 MB/s eta 0:00:00 Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 2)) (1.16.0) Collecting pockets>=0.3 (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 2)) Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Collecting sphinxcontrib-applehelp (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.2/121.2 kB 191.7 MB/s eta 0:00:00 Collecting sphinxcontrib-devhelp (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 kB 177.4 MB/s eta 0:00:00 Collecting sphinxcontrib-jsmath (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.5/100.5 kB 172.6 MB/s eta 0:00:00 Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (1.1.5) Collecting sphinxcontrib-qthelp (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.6/90.6 kB 183.9 MB/s eta 0:00:00 Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (3.0.3) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2.15.1) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2.2.0) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2.12.1) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (0.7.13) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (1.4.1) Requirement already satisfied: requests>=2.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2.31.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (23.1) Collecting importlib-metadata>=4.4 (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading importlib_metadata-6.6.0-py3-none-any.whl (22 kB) Collecting Jinja2>=2.3 (from sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.7/125.7 kB 194.2 MB/s eta 0:00:00 Collecting MarkupSafe<=2.0.1 (from sphinxext.remoteliteralinclude->-r docs/requirements.txt (line 6)) Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (31 kB) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2023.3) Collecting zipp>=0.5 (from importlib-metadata>=4.4->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) Downloading zipp-3.15.0-py3-none-any.whl (6.8 kB) Requirement already satisfied: typing-extensions>=3.6.4 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from importlib-metadata>=4.4->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (4.5.0) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (3.1.0) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (3.4) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2.0.3) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=4.4.0->-r docs/requirements.txt (line 3)) (2023.5.7) Installing collected packages: zipp, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pockets, MarkupSafe, docutils, sphinxcontrib-napoleon, plantweb, Jinja2, importlib-metadata, sphinxext.remoteliteralinclude, sphinx, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton Attempting uninstall: MarkupSafe Found existing installation: MarkupSafe 2.1.3 Uninstalling MarkupSafe-2.1.3: Successfully uninstalled MarkupSafe-2.1.3 Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: Jinja2 Found existing installation: Jinja2 3.0.3 Uninstalling Jinja2-3.0.3: Successfully uninstalled Jinja2-3.0.3 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed Jinja2-2.11.3 MarkupSafe-2.0.1 docutils-0.16 importlib-metadata-6.6.0 plantweb-1.2.1 pockets-0.9.1 sphinx-4.4.0 sphinx-copybutton-0.4.0 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.4.0 zipp-3.15.0 [rtd-command-info] start-time: 2023-06-08T19:05:46.964153Z, end-time: 2023-06-08T19:05:47.989084Z, duration: 1, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emod_api.egg-info writing emod_api.egg-info/PKG-INFO writing dependency_links to emod_api.egg-info/dependency_links.txt writing requirements to emod_api.egg-info/requires.txt writing top-level names to emod_api.egg-info/top_level.txt writing manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest file 'emod_api.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'emod_api/tests/data/*' warning: no directories found matching 'emod_api/dtk_tools/serialization/test-data/*' adding license file 'LICENSE' writing manifest file 'emod_api.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/examples copying examples/some_config_i_found.py -> build/lib/examples copying examples/write_config_from_default_and_params.py -> build/lib/examples copying examples/serialized_file_mc_to_sc.py -> build/lib/examples copying examples/intervention_from_schema.py -> build/lib/examples copying examples/spatial_report.py -> build/lib/examples copying examples/migration.py -> build/lib/examples copying examples/weather_file.py -> build/lib/examples copying examples/property_report_to_csv.py -> build/lib/examples copying examples/__init__.py -> build/lib/examples copying examples/insetchart.py -> build/lib/examples copying examples/default_from_schema.py -> build/lib/examples creating build/lib/emod_api copying emod_api/__main__.py -> build/lib/emod_api copying emod_api/peek_camp.py -> build/lib/emod_api copying emod_api/campaign.py -> build/lib/emod_api copying emod_api/__init__.py -> build/lib/emod_api copying emod_api/schema_to_class.py -> build/lib/emod_api copying emod_api/multidim_plotter.py -> build/lib/emod_api creating build/lib/emod_api/weather copying emod_api/weather/weather.py -> build/lib/emod_api/weather copying emod_api/weather/__main__.py -> build/lib/emod_api/weather copying emod_api/weather/__init__.py -> build/lib/emod_api/weather creating build/lib/emod_api/schema copying emod_api/schema/__main__.py -> build/lib/emod_api/schema copying emod_api/schema/get_schema.py -> build/lib/emod_api/schema copying emod_api/schema/dtk_post_process_schema.py -> build/lib/emod_api/schema copying emod_api/schema/__init__.py -> build/lib/emod_api/schema creating build/lib/emod_api/channelreports copying emod_api/channelreports/channels.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/plot_icj_means.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__main__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/plot_prop_report.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/__init__.py -> build/lib/emod_api/channelreports copying emod_api/channelreports/utils.py -> build/lib/emod_api/channelreports creating build/lib/emod_api/demographics copying emod_api/demographics/DemographicsGenerator.py -> build/lib/emod_api/demographics copying emod_api/demographics/demographics_utils.py -> build/lib/emod_api/demographics copying emod_api/demographics/__main__.py -> build/lib/emod_api/demographics copying emod_api/demographics/Node.py -> build/lib/emod_api/demographics copying emod_api/demographics/PreDefinedDistributions.py -> build/lib/emod_api/demographics copying emod_api/demographics/__init__.py -> build/lib/emod_api/demographics copying emod_api/demographics/Demographics.py -> build/lib/emod_api/demographics copying emod_api/demographics/Updateable.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsInputDataParsers.py -> build/lib/emod_api/demographics copying emod_api/demographics/BaseInputFile.py -> build/lib/emod_api/demographics copying emod_api/demographics/PropertiesAndAttributes.py -> build/lib/emod_api/demographics copying emod_api/demographics/DemographicsTemplates.py -> build/lib/emod_api/demographics copying emod_api/demographics/grid_construction.py -> build/lib/emod_api/demographics creating build/lib/emod_api/spatialreports copying emod_api/spatialreports/__main__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/spatial.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/__init__.py -> build/lib/emod_api/spatialreports copying emod_api/spatialreports/plot_spat_means.py -> build/lib/emod_api/spatialreports creating build/lib/emod_api/serialization copying emod_api/serialization/dtkFileTools.py -> build/lib/emod_api/serialization copying emod_api/serialization/__main__.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileUtility.py -> build/lib/emod_api/serialization copying emod_api/serialization/__init__.py -> build/lib/emod_api/serialization copying emod_api/serialization/CensusAndModPop.py -> build/lib/emod_api/serialization copying emod_api/serialization/dtkFileSupport.py -> build/lib/emod_api/serialization copying emod_api/serialization/SerializedPopulation.py -> build/lib/emod_api/serialization creating build/lib/emod_api/config copying emod_api/config/from_overrides.py -> build/lib/emod_api/config copying emod_api/config/schema_to_config.py -> build/lib/emod_api/config copying emod_api/config/__main__.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_w5ml.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema_no_validation.py -> build/lib/emod_api/config copying emod_api/config/dtk_post_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/dtk_pre_process_adhocevents.py -> build/lib/emod_api/config copying emod_api/config/__init__.py -> build/lib/emod_api/config copying emod_api/config/from_poi_and_binary.py -> build/lib/emod_api/config copying emod_api/config/from_schema.py -> build/lib/emod_api/config copying emod_api/config/default_from_schema.py -> build/lib/emod_api/config creating build/lib/emod_api/legacy copying emod_api/legacy/plotAllCharts.py -> build/lib/emod_api/legacy copying emod_api/legacy/__init__.py -> build/lib/emod_api/legacy creating build/lib/emod_api/migration copying emod_api/migration/__main__.py -> build/lib/emod_api/migration copying emod_api/migration/migration.py -> build/lib/emod_api/migration copying emod_api/migration/__init__.py -> build/lib/emod_api/migration creating build/lib/emod_api/interventions copying emod_api/interventions/common.py -> build/lib/emod_api/interventions copying emod_api/interventions/__main__.py -> build/lib/emod_api/interventions copying emod_api/interventions/outbreak.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl.py -> build/lib/emod_api/interventions copying emod_api/interventions/ccdl_viz.py -> build/lib/emod_api/interventions copying emod_api/interventions/migration.py -> build/lib/emod_api/interventions copying emod_api/interventions/__init__.py -> build/lib/emod_api/interventions copying emod_api/interventions/import_pressure.py -> build/lib/emod_api/interventions copying emod_api/interventions/node_multiplier.py -> build/lib/emod_api/interventions copying emod_api/interventions/utils.py -> build/lib/emod_api/interventions copying emod_api/interventions/simple_vaccine.py -> build/lib/emod_api/interventions creating build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__main__.py -> build/lib/emod_api/tabularoutput copying emod_api/tabularoutput/__init__.py -> build/lib/emod_api/tabularoutput creating build/lib/emod_api/migration/client copying emod_api/migration/client/__init__.py -> build/lib/emod_api/migration/client copying emod_api/migration/client/client.py -> build/lib/emod_api/migration/client creating build/lib/tests creating build/lib/tests/unittests copying tests/unittests/test_config_imports.py -> build/lib/tests/unittests copying tests/unittests/test_properties_and_attributes.py -> build/lib/tests/unittests copying tests/unittests/test_version.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying tests/unittests/test_schema_imports.py -> build/lib/tests/unittests copying tests/unittests/test_demographics_imports.py -> build/lib/tests/unittests copying tests/unittests/test_migration_imports.py -> build/lib/tests/unittests creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/examples copying build/lib/examples/some_config_i_found.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/write_config_from_default_and_params.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/serialized_file_mc_to_sc.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/intervention_from_schema.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/spatial_report.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/migration.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/weather_file.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/property_report_to_csv.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/__init__.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/insetchart.py -> build/bdist.linux-x86_64/egg/examples copying build/lib/examples/default_from_schema.py -> build/bdist.linux-x86_64/egg/examples creating build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/weather.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/weather copying build/lib/emod_api/weather/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/weather creating build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/get_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/dtk_post_process_schema.py -> build/bdist.linux-x86_64/egg/emod_api/schema copying build/lib/emod_api/schema/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/schema creating build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/channels.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/plot_icj_means.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/plot_prop_report.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/channelreports/utils.py -> build/bdist.linux-x86_64/egg/emod_api/channelreports copying build/lib/emod_api/__main__.py -> build/bdist.linux-x86_64/egg/emod_api copying build/lib/emod_api/peek_camp.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsGenerator.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/demographics_utils.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Node.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PreDefinedDistributions.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Demographics.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/Updateable.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsInputDataParsers.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/BaseInputFile.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/PropertiesAndAttributes.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/DemographicsTemplates.py -> build/bdist.linux-x86_64/egg/emod_api/demographics copying build/lib/emod_api/demographics/grid_construction.py -> build/bdist.linux-x86_64/egg/emod_api/demographics creating build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/spatial.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/spatialreports/plot_spat_means.py -> build/bdist.linux-x86_64/egg/emod_api/spatialreports copying build/lib/emod_api/campaign.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileTools.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileUtility.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/CensusAndModPop.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/dtkFileSupport.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/serialization/SerializedPopulation.py -> build/bdist.linux-x86_64/egg/emod_api/serialization copying build/lib/emod_api/__init__.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_overrides.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/schema_to_config.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_w5ml.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema_no_validation.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_post_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/dtk_pre_process_adhocevents.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_poi_and_binary.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/config/default_from_schema.py -> build/bdist.linux-x86_64/egg/emod_api/config copying build/lib/emod_api/schema_to_class.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/legacy/plotAllCharts.py -> build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/legacy/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/legacy copying build/lib/emod_api/multidim_plotter.py -> build/bdist.linux-x86_64/egg/emod_api creating build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/migration.py -> build/bdist.linux-x86_64/egg/emod_api/migration copying build/lib/emod_api/migration/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration creating build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client copying build/lib/emod_api/migration/client/client.py -> build/bdist.linux-x86_64/egg/emod_api/migration/client creating build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/common.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/ccdl_viz.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/migration.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/import_pressure.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/node_multiplier.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/utils.py -> build/bdist.linux-x86_64/egg/emod_api/interventions copying build/lib/emod_api/interventions/simple_vaccine.py -> build/bdist.linux-x86_64/egg/emod_api/interventions creating build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__main__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput copying build/lib/emod_api/tabularoutput/__init__.py -> build/bdist.linux-x86_64/egg/emod_api/tabularoutput creating build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_config_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_properties_and_attributes.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_version.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_schema_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demographics_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_migration_imports.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/examples/some_config_i_found.py to some_config_i_found.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/write_config_from_default_and_params.py to write_config_from_default_and_params.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/serialized_file_mc_to_sc.py to serialized_file_mc_to_sc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/intervention_from_schema.py to intervention_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/spatial_report.py to spatial_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/weather_file.py to weather_file.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/property_report_to_csv.py to property_report_to_csv.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/insetchart.py to insetchart.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/examples/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/weather.py to weather.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/weather/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/get_schema.py to get_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/dtk_post_process_schema.py to dtk_post_process_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/channels.py to channels.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_icj_means.py to plot_icj_means.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/plot_prop_report.py to plot_prop_report.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/channelreports/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/peek_camp.py to peek_camp.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsGenerator.py to DemographicsGenerator.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/demographics_utils.py to demographics_utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Node.py to Node.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PreDefinedDistributions.py to PreDefinedDistributions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Demographics.py to Demographics.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/Updateable.py to Updateable.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsInputDataParsers.py to DemographicsInputDataParsers.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/BaseInputFile.py to BaseInputFile.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/PropertiesAndAttributes.py to PropertiesAndAttributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/DemographicsTemplates.py to DemographicsTemplates.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/demographics/grid_construction.py to grid_construction.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/spatial.py to spatial.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/spatialreports/plot_spat_means.py to plot_spat_means.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/campaign.py to campaign.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileTools.py to dtkFileTools.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileUtility.py to dtkFileUtility.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/CensusAndModPop.py to CensusAndModPop.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/dtkFileSupport.py to dtkFileSupport.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/serialization/SerializedPopulation.py to SerializedPopulation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_overrides.py to from_overrides.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/schema_to_config.py to schema_to_config.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_w5ml.py to dtk_pre_process_w5ml.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema_no_validation.py to default_from_schema_no_validation.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_post_process_adhocevents.py to dtk_post_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/dtk_pre_process_adhocevents.py to dtk_pre_process_adhocevents.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_poi_and_binary.py to from_poi_and_binary.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/from_schema.py to from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/config/default_from_schema.py to default_from_schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/schema_to_class.py to schema_to_class.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/legacy/plotAllCharts.py to plotAllCharts.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/legacy/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/multidim_plotter.py to multidim_plotter.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/migration/client/client.py to client.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/outbreak.py to outbreak.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl.py to ccdl.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/ccdl_viz.py to ccdl_viz.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/migration.py to migration.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/import_pressure.py to import_pressure.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/node_multiplier.py to node_multiplier.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/interventions/simple_vaccine.py to simple_vaccine.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__main__.py to __main__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/emod_api/tabularoutput/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_config_imports.py to test_config_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_properties_and_attributes.py to test_properties_and_attributes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_version.py to test_version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_schema_imports.py to test_schema_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demographics_imports.py to test_demographics_imports.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_migration_imports.py to test_migration_imports.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emod_api.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emod_api.config.__pycache__.from_poi_and_binary.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileTools.cpython-37: module references __file__ emod_api.serialization.__pycache__.dtkFileUtility.cpython-37: module references __file__ emod_api.spatialreports.__pycache__.__main__.cpython-37: module references __file__ examples.__pycache__.insetchart.cpython-37: module references __file__ examples.__pycache__.property_report_to_csv.cpython-37: module references __file__ examples.__pycache__.spatial_report.cpython-37: module references __file__ examples.__pycache__.weather_file.cpython-37: module references __file__ creating dist creating 'dist/emod_api-1.28.7-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emod_api-1.28.7-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.28.7-py3.7.egg Extracting emod_api-1.28.7-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Adding emod-api 1.28.7 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages/emod_api-1.28.7-py3.7.egg Processing dependencies for emod-api==1.28.7 Searching for matplotlib==3.5.3 Best match: matplotlib 3.5.3 Adding matplotlib 3.5.3 to easy-install.pth file Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for parse==1.19.0 Best match: parse 1.19.0 Adding parse 1.19.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for graphviz==0.20.1 Best match: graphviz 0.20.1 Adding graphviz 0.20.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for lz4==4.3.2 Best match: lz4 4.3.2 Adding lz4 4.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scikit-learn==1.0.2 Best match: scikit-learn 1.0.2 Adding scikit-learn 1.0.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for geographiclib==2.0 Best match: geographiclib 2.0 Adding geographiclib 2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pyproj==3.2.1 Best match: pyproj 3.2.1 Adding pyproj 3.2.1 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for shapely==2.0.1 Best match: shapely 2.0.1 Adding shapely 2.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for scipy==1.7.3 Best match: scipy 1.7.3 scipy 1.7.3 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pandas==1.3.5 Best match: pandas 1.3.5 pandas 1.3.5 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for PyYAML==6.0 Best match: PyYAML 6.0 Adding PyYAML 6.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for numpy==1.21.6 Best match: numpy 1.21.6 numpy 1.21.6 is already the active version in easy-install.pth Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 python-dateutil 2.8.2 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for pyparsing==3.0.9 Best match: pyparsing 3.0.9 pyparsing 3.0.9 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for packaging==23.1 Best match: packaging 23.1 Adding packaging 23.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for Pillow==9.5.0 Best match: Pillow 9.5.0 Adding Pillow 9.5.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for cycler==0.11.0 Best match: cycler 0.11.0 cycler 0.11.0 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for kiwisolver==1.4.4 Best match: kiwisolver 1.4.4 kiwisolver 1.4.4 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for fonttools==4.38.0 Best match: fonttools 4.38.0 fonttools 4.38.0 is already the active version in easy-install.pth Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/bin Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Searching for joblib==1.2.0 Best match: joblib 1.2.0 Adding joblib 1.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for threadpoolctl==3.1.0 Best match: threadpoolctl 3.1.0 Adding threadpoolctl 3.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for certifi==2023.5.7 Best match: certifi 2023.5.7 Adding certifi 2023.5.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for pytz==2023.3 Best match: pytz 2023.3 Adding pytz 2023.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/envs/latest/lib/python3.7/site-packages Searching for typing-extensions==4.5.0 Best match: typing-extensions 4.5.0 typing-extensions 4.5.0 is already the active version in easy-install.pth Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages Finished processing dependencies for emod-api==1.28.7 [rtd-command-info] start-time: 2023-06-08T19:05:52.881926Z, end-time: 2023-06-08T19:05:52.951152Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "emod-api" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ tags.add('emodapi') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude', 'sphinx.ext.viewcode' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = ['emod_api.dtk_tools'] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emod-api' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EMOD-API' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emod-api-docs.tex', u'emod-api', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emod-api-docs', u'emod-api', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emod-api-docs', u'emod-api', author, 'Institute for Disease Modeling', 'How to use emodpy for disease simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} # This following legacy behavior will gradually be sliced out until its deprecated and removed. # Skipped for Sphinx 6+ # Skipped by internal Feature flag SKIP_SPHINX_HTML_THEME_PATH # Skipped by all new projects since SKIP_SPHINX_HTML_THEME_PATH's introduction (jan 2023) if ( using_rtd_theme and version_info < (6,0) and not False ): theme = importlib.import_module('sphinx_rtd_theme') if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] # Define websupport2_base_url and websupport2_static_url if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.28.5", "/en/v1.28.5/"), ("v1.28.1", "/en/v1.28.1/"), ("v1.27.4", "/en/v1.27.4/"), ("v1.27.1", "/en/v1.27.1/"), ("v1.26.1", "/en/v1.26.1/"), ("v1.25.1", "/en/v1.25.1/"), ("v1.24.11", "/en/v1.24.11/"), ("v1.24.8", "/en/v1.24.8/"), ("v1.24.1", "/en/v1.24.1/"), ("v1.23.2", "/en/v1.23.2/"), ("v1.23.1", "/en/v1.23.1/"), ("v1.22.11", "/en/v1.22.11/"), ("v1.22.10", "/en/v1.22.10/"), ("v1.22.9", "/en/v1.22.9/"), ("v1.22.1", "/en/v1.22.1/"), ("v1.22.0", "/en/v1.22.0/"), ("v1.21.1", "/en/v1.21.1/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.20.1", "/en/v1.20.1/"), ("v1.19.13", "/en/v1.19.13/"), ("v1.19.2", "/en/v1.19.2/"), ("v1.18.1", "/en/v1.18.1/"), ("v1.17.4", "/en/v1.17.4/"), ("v1.17.3", "/en/v1.17.3/"), ("v1.17.2", "/en/v1.17.2/"), ("v1.16.10", "/en/v1.16.10/"), ("v1.16.5", "/en/v1.16.5/"), ("v1.16.2", "/en/v1.16.2/"), ("v1.15.6", "/en/v1.15.6/"), ("v1.15.4", "/en/v1.15.4/"), ("v1.15.1", "/en/v1.15.1/"), ("v1.14.7", "/en/v1.14.7/"), ("v1.14.1", "/en/v1.14.1/"), ("v1.13.1", "/en/v1.13.1/"), ("v1.12.1", "/en/v1.12.1/"), ("v1.11.7", "/en/v1.11.7/"), ("v1.11.4", "/en/v1.11.4/"), ("v1.11.0", "/en/v1.11.0/"), ("v1.10.8", "/en/v1.10.8/"), ("v1.10.6", "/en/v1.10.6/"), ("v1.10.5", "/en/v1.10.5/"), ("v1.10.3", "/en/v1.10.3/"), ("v1.10.2", "/en/v1.10.2/"), ("v1.9.2", "/en/v1.9.2/"), ("v1.9.1", "/en/v1.9.1/"), ("v1.8.9", "/en/v1.8.9/"), ("v1.8.8", "/en/v1.8.8/"), ("v1.8.6", "/en/v1.8.6/"), ("v1.8.2", "/en/v1.8.2/"), ("v1.7.5", "/en/v1.7.5/"), ("v1.7.4", "/en/v1.7.4/"), ("v1.7.1", "/en/v1.7.1/"), ("v1.6.3", "/en/v1.6.3/"), ("v1.5.1", "/en/v1.5.1/"), ("v1.5.0", "/en/v1.5.0/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emod-api/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emod-api/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emod-api', 'name': u'emod-api', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': 'https://docs.idmod.org/projects/emod-api/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emod-api', 'github_version': 'master', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': 'dc982307', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): for key in context: if key not in html_context: html_context[key] = context[key] else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emod-api/builds/1525760/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2023-06-08T19:05:53.237738Z, end-time: 2023-06-08T19:06:26.112173Z, duration: 32, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 69 source files that are out of date updating environment: [new config] 69 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 2%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 5%] emod_api.channelreports.channels reading sources... [ 7%] emod_api.channelreports.plot_icj_means reading sources... [ 8%] emod_api.channelreports.plot_prop_report reading sources... [ 10%] emod_api.channelreports.utils reading sources... [ 11%] emod_api.config reading sources... [ 13%] emod_api.config.default_from_schema reading sources... [ 14%] emod_api.config.default_from_schema_no_validation reading sources... [ 15%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 17%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 21%] emod_api.config.from_poi_and_binary reading sources... [ 23%] emod_api.config.from_schema reading sources... [ 24%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 26%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 28%] emod_api.demographics.Demographics reading sources... [ 30%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 33%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 39%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 42%] emod_api.demographics.grid_construction reading sources... [ 43%] emod_api.interventions reading sources... [ 44%] emod_api.interventions.ccdl reading sources... [ 46%] emod_api.interventions.ccdl_viz reading sources... [ 47%] emod_api.interventions.common reading sources... [ 49%] emod_api.interventions.import_pressure reading sources... [ 50%] emod_api.interventions.migration reading sources... [ 52%] emod_api.interventions.node_multiplier reading sources... [ 53%] emod_api.interventions.outbreak reading sources... [ 55%] emod_api.interventions.simple_vaccine reading sources... [ 56%] emod_api.interventions.utils reading sources... [ 57%] emod_api.legacy reading sources... [ 59%] emod_api.legacy.plotAllCharts no display found. Using non-interactive Agg backend reading sources... [ 60%] emod_api.migration reading sources... [ 62%] emod_api.migration.client reading sources... [ 63%] emod_api.migration.client.client reading sources... [ 65%] emod_api.migration.migration reading sources... [ 66%] emod_api.multidim_plotter reading sources... [ 68%] emod_api.peek_camp reading sources... [ 69%] emod_api.schema reading sources... [ 71%] emod_api.schema.dtk_post_process_schema reading sources... [ 72%] emod_api.schema.get_schema reading sources... [ 73%] emod_api.schema_to_class reading sources... [ 75%] emod_api.serialization reading sources... [ 76%] emod_api.serialization.CensusAndModPop reading sources... [ 78%] emod_api.serialization.SerializedPopulation reading sources... [ 79%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 82%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 85%] emod_api.spatialreports.plot_spat_means reading sources... [ 86%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 89%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 92%] faq reading sources... [ 94%] glossary reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [ 98%] modules reading sources... [100%] plotters looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 1%] emod_api writing output... [ 2%] emod_api.campaign writing output... [ 4%] emod_api.channelreports writing output... [ 5%] emod_api.channelreports.channels writing output... [ 7%] emod_api.channelreports.plot_icj_means writing output... [ 8%] emod_api.channelreports.plot_prop_report writing output... [ 10%] emod_api.channelreports.utils writing output... [ 11%] emod_api.config writing output... [ 13%] emod_api.config.default_from_schema writing output... [ 14%] emod_api.config.default_from_schema_no_validation writing output... [ 15%] emod_api.config.dtk_post_process_adhocevents writing output... [ 17%] emod_api.config.dtk_pre_process_adhocevents writing output... [ 18%] emod_api.config.dtk_pre_process_w5ml writing output... [ 20%] emod_api.config.from_overrides writing output... [ 21%] emod_api.config.from_poi_and_binary writing output... [ 23%] emod_api.config.from_schema writing output... [ 24%] emod_api.config.schema_to_config writing output... [ 26%] emod_api.demographics writing output... [ 27%] emod_api.demographics.BaseInputFile writing output... [ 28%] emod_api.demographics.Demographics writing output... [ 30%] emod_api.demographics.DemographicsGenerator writing output... [ 31%] emod_api.demographics.DemographicsInputDataParsers writing output... [ 33%] emod_api.demographics.DemographicsTemplates writing output... [ 34%] emod_api.demographics.Node writing output... [ 36%] emod_api.demographics.PreDefinedDistributions writing output... [ 37%] emod_api.demographics.PropertiesAndAttributes writing output... [ 39%] emod_api.demographics.Updateable writing output... [ 40%] emod_api.demographics.demographics_utils writing output... [ 42%] emod_api.demographics.grid_construction writing output... [ 43%] emod_api.interventions writing output... [ 44%] emod_api.interventions.ccdl writing output... [ 46%] emod_api.interventions.ccdl_viz writing output... [ 47%] emod_api.interventions.common writing output... [ 49%] emod_api.interventions.import_pressure writing output... [ 50%] emod_api.interventions.migration writing output... [ 52%] emod_api.interventions.node_multiplier writing output... [ 53%] emod_api.interventions.outbreak writing output... [ 55%] emod_api.interventions.simple_vaccine writing output... [ 56%] emod_api.interventions.utils writing output... [ 57%] emod_api.legacy writing output... [ 59%] emod_api.legacy.plotAllCharts writing output... [ 60%] emod_api.migration writing output... [ 62%] emod_api.migration.client writing output... [ 63%] emod_api.migration.client.client writing output... [ 65%] emod_api.migration.migration writing output... [ 66%] emod_api.multidim_plotter writing output... [ 68%] emod_api.peek_camp writing output... [ 69%] emod_api.schema writing output... [ 71%] emod_api.schema.dtk_post_process_schema writing output... [ 72%] emod_api.schema.get_schema writing output... [ 73%] emod_api.schema_to_class writing output... [ 75%] emod_api.serialization writing output... [ 76%] emod_api.serialization.CensusAndModPop writing output... [ 78%] emod_api.serialization.SerializedPopulation writing output... [ 79%] emod_api.serialization.dtkFileSupport writing output... [ 81%] emod_api.serialization.dtkFileTools writing output... [ 82%] emod_api.serialization.dtkFileUtility writing output... [ 84%] emod_api.spatialreports writing output... [ 85%] emod_api.spatialreports.plot_spat_means writing output... [ 86%] emod_api.spatialreports.spatial writing output... [ 88%] emod_api.tabularoutput writing output... [ 89%] emod_api.weather writing output... [ 91%] emod_api.weather.weather writing output... [ 92%] faq writing output... [ 94%] glossary writing output... [ 95%] index writing output... [ 97%] installation writing output... [ 98%] modules writing output... [100%] plotters generating indices... genindex py-modindex done highlighting module code... [ 2%] emod_api.campaign highlighting module code... [ 4%] emod_api.channelreports.channels highlighting module code... [ 6%] emod_api.channelreports.plot_icj_means highlighting module code... [ 8%] emod_api.channelreports.plot_prop_report highlighting module code... [ 10%] emod_api.channelreports.utils highlighting module code... [ 12%] emod_api.config.default_from_schema highlighting module code... [ 14%] emod_api.config.default_from_schema_no_validation highlighting module code... [ 16%] emod_api.config.dtk_post_process_adhocevents highlighting module code... [ 18%] emod_api.config.dtk_pre_process_adhocevents highlighting module code... [ 20%] emod_api.config.dtk_pre_process_w5ml highlighting module code... [ 22%] emod_api.config.from_overrides highlighting module code... [ 25%] emod_api.config.from_poi_and_binary highlighting module code... [ 27%] emod_api.config.from_schema highlighting module code... [ 29%] emod_api.config.schema_to_config highlighting module code... [ 31%] emod_api.demographics.BaseInputFile highlighting module code... [ 33%] emod_api.demographics.Demographics highlighting module code... [ 35%] emod_api.demographics.DemographicsGenerator highlighting module code... [ 37%] emod_api.demographics.DemographicsInputDataParsers highlighting module code... [ 39%] emod_api.demographics.DemographicsTemplates highlighting module code... [ 41%] emod_api.demographics.Node highlighting module code... [ 43%] emod_api.demographics.PreDefinedDistributions highlighting module code... [ 45%] emod_api.demographics.PropertiesAndAttributes highlighting module code... [ 47%] emod_api.demographics.Updateable highlighting module code... [ 50%] emod_api.demographics.demographics_utils highlighting module code... [ 52%] emod_api.demographics.grid_construction highlighting module code... [ 54%] emod_api.interventions.ccdl_viz highlighting module code... [ 56%] emod_api.interventions.common highlighting module code... [ 58%] emod_api.interventions.import_pressure highlighting module code... [ 60%] emod_api.interventions.migration highlighting module code... [ 62%] emod_api.interventions.node_multiplier highlighting module code... [ 64%] emod_api.interventions.outbreak highlighting module code... [ 66%] emod_api.interventions.simple_vaccine highlighting module code... [ 68%] emod_api.interventions.utils highlighting module code... [ 70%] emod_api.legacy.plotAllCharts highlighting module code... [ 72%] emod_api.migration.client.client highlighting module code... [ 75%] emod_api.migration.migration highlighting module code... [ 77%] emod_api.multidim_plotter highlighting module code... [ 79%] emod_api.peek_camp highlighting module code... [ 81%] emod_api.schema.dtk_post_process_schema highlighting module code... [ 83%] emod_api.schema.get_schema highlighting module code... [ 85%] emod_api.schema_to_class highlighting module code... [ 87%] emod_api.serialization.CensusAndModPop highlighting module code... [ 89%] emod_api.serialization.SerializedPopulation highlighting module code... [ 91%] emod_api.serialization.dtkFileSupport highlighting module code... [ 93%] emod_api.serialization.dtkFileTools highlighting module code... [ 95%] emod_api.spatialreports.plot_spat_means highlighting module code... [ 97%] emod_api.spatialreports.spatial highlighting module code... [100%] emod_api.weather.weather writing additional pages... search opensearch done copying images... [ 20%] images/fertility_over_time_doc.png copying images... [ 40%] images/sweep_plot.png copying images... [ 60%] images/spat_plot.png copying images... [ 80%] images/prop_plot.png copying images... [100%] images/colormap_plot.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in ../_readthedocs/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2023-06-08T19:06:26.294893Z, end-time: 2023-06-08T19:06:39.715261Z, duration: 13, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 69 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 2%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 5%] emod_api.channelreports.channels reading sources... [ 7%] emod_api.channelreports.plot_icj_means reading sources... [ 8%] emod_api.channelreports.plot_prop_report reading sources... [ 10%] emod_api.channelreports.utils reading sources... [ 11%] emod_api.config reading sources... [ 13%] emod_api.config.default_from_schema reading sources... [ 14%] emod_api.config.default_from_schema_no_validation reading sources... [ 15%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 17%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 21%] emod_api.config.from_poi_and_binary reading sources... [ 23%] emod_api.config.from_schema reading sources... [ 24%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 26%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 28%] emod_api.demographics.Demographics reading sources... [ 30%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 33%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 39%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 42%] emod_api.demographics.grid_construction reading sources... [ 43%] emod_api.interventions reading sources... [ 44%] emod_api.interventions.ccdl reading sources... [ 46%] emod_api.interventions.ccdl_viz reading sources... [ 47%] emod_api.interventions.common reading sources... [ 49%] emod_api.interventions.import_pressure reading sources... [ 50%] emod_api.interventions.migration reading sources... [ 52%] emod_api.interventions.node_multiplier reading sources... [ 53%] emod_api.interventions.outbreak reading sources... [ 55%] emod_api.interventions.simple_vaccine reading sources... [ 56%] emod_api.interventions.utils reading sources... [ 57%] emod_api.legacy reading sources... [ 59%] emod_api.legacy.plotAllCharts no display found. Using non-interactive Agg backend reading sources... [ 60%] emod_api.migration reading sources... [ 62%] emod_api.migration.client reading sources... [ 63%] emod_api.migration.client.client reading sources... [ 65%] emod_api.migration.migration reading sources... [ 66%] emod_api.multidim_plotter reading sources... [ 68%] emod_api.peek_camp reading sources... [ 69%] emod_api.schema reading sources... [ 71%] emod_api.schema.dtk_post_process_schema reading sources... [ 72%] emod_api.schema.get_schema reading sources... [ 73%] emod_api.schema_to_class reading sources... [ 75%] emod_api.serialization reading sources... [ 76%] emod_api.serialization.CensusAndModPop reading sources... [ 78%] emod_api.serialization.SerializedPopulation reading sources... [ 79%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 82%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 85%] emod_api.spatialreports.plot_spat_means reading sources... [ 86%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 89%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 92%] faq reading sources... [ 94%] glossary reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [ 98%] modules reading sources... [100%] plotters looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.channelreports.plot_icj_means emod_api.channelreports.plot_prop_report emod_api.channelreports.utils emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.legacy emod_api.legacy.plotAllCharts emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.plot_spat_means emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.multidim_plotter emod_api.peek_camp emod_api.schema_to_class glossary plotters done writing... done writing additional files... opensearchdone copying images... [ 20%] images/fertility_over_time_doc.png copying images... [ 40%] images/sweep_plot.png copying images... [ 60%] images/spat_plot.png copying images... [ 80%] images/prop_plot.png copying images... [100%] images/colormap_plot.png copying static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in ../_readthedocs/htmlzip. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2023-06-08T19:06:40.925288Z, end-time: 2023-06-08T19:06:53.913430Z, duration: 12, exit-code: 0 python -m sphinx -T -E -b latex -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/pdf Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [new config] 69 added, 0 changed, 0 removed reading sources... [ 1%] emod_api reading sources... [ 2%] emod_api.campaign reading sources... [ 4%] emod_api.channelreports reading sources... [ 5%] emod_api.channelreports.channels reading sources... [ 7%] emod_api.channelreports.plot_icj_means reading sources... [ 8%] emod_api.channelreports.plot_prop_report reading sources... [ 10%] emod_api.channelreports.utils reading sources... [ 11%] emod_api.config reading sources... [ 13%] emod_api.config.default_from_schema reading sources... [ 14%] emod_api.config.default_from_schema_no_validation reading sources... [ 15%] emod_api.config.dtk_post_process_adhocevents reading sources... [ 17%] emod_api.config.dtk_pre_process_adhocevents reading sources... [ 18%] emod_api.config.dtk_pre_process_w5ml reading sources... [ 20%] emod_api.config.from_overrides reading sources... [ 21%] emod_api.config.from_poi_and_binary reading sources... [ 23%] emod_api.config.from_schema reading sources... [ 24%] emod_api.config.schema_to_config emod_api.config.schema_to_config is deprecated. Please use emod_api.config.from_schema. reading sources... [ 26%] emod_api.demographics reading sources... [ 27%] emod_api.demographics.BaseInputFile reading sources... [ 28%] emod_api.demographics.Demographics reading sources... [ 30%] emod_api.demographics.DemographicsGenerator reading sources... [ 31%] emod_api.demographics.DemographicsInputDataParsers reading sources... [ 33%] emod_api.demographics.DemographicsTemplates reading sources... [ 34%] emod_api.demographics.Node reading sources... [ 36%] emod_api.demographics.PreDefinedDistributions reading sources... [ 37%] emod_api.demographics.PropertiesAndAttributes reading sources... [ 39%] emod_api.demographics.Updateable reading sources... [ 40%] emod_api.demographics.demographics_utils reading sources... [ 42%] emod_api.demographics.grid_construction reading sources... [ 43%] emod_api.interventions reading sources... [ 44%] emod_api.interventions.ccdl reading sources... [ 46%] emod_api.interventions.ccdl_viz reading sources... [ 47%] emod_api.interventions.common reading sources... [ 49%] emod_api.interventions.import_pressure reading sources... [ 50%] emod_api.interventions.migration reading sources... [ 52%] emod_api.interventions.node_multiplier reading sources... [ 53%] emod_api.interventions.outbreak reading sources... [ 55%] emod_api.interventions.simple_vaccine reading sources... [ 56%] emod_api.interventions.utils reading sources... [ 57%] emod_api.legacy reading sources... [ 59%] emod_api.legacy.plotAllCharts no display found. Using non-interactive Agg backend reading sources... [ 60%] emod_api.migration reading sources... [ 62%] emod_api.migration.client reading sources... [ 63%] emod_api.migration.client.client reading sources... [ 65%] emod_api.migration.migration reading sources... [ 66%] emod_api.multidim_plotter reading sources... [ 68%] emod_api.peek_camp reading sources... [ 69%] emod_api.schema reading sources... [ 71%] emod_api.schema.dtk_post_process_schema reading sources... [ 72%] emod_api.schema.get_schema reading sources... [ 73%] emod_api.schema_to_class reading sources... [ 75%] emod_api.serialization reading sources... [ 76%] emod_api.serialization.CensusAndModPop reading sources... [ 78%] emod_api.serialization.SerializedPopulation reading sources... [ 79%] emod_api.serialization.dtkFileSupport reading sources... [ 81%] emod_api.serialization.dtkFileTools reading sources... [ 82%] emod_api.serialization.dtkFileUtility reading sources... [ 84%] emod_api.spatialreports reading sources... [ 85%] emod_api.spatialreports.plot_spat_means reading sources... [ 86%] emod_api.spatialreports.spatial reading sources... [ 88%] emod_api.tabularoutput reading sources... [ 89%] emod_api.weather reading sources... [ 91%] emod_api.weather.weather reading sources... [ 92%] faq reading sources... [ 94%] glossary reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [ 98%] modules reading sources... [100%] plotters looking for now-outdated files... none found pickling environment... done checking consistency... done processing emod-api-docs.tex... index installation faq modules emod_api emod_api.channelreports emod_api.channelreports.channels emod_api.channelreports.plot_icj_means emod_api.channelreports.plot_prop_report emod_api.channelreports.utils emod_api.config emod_api.config.default_from_schema emod_api.config.default_from_schema_no_validation emod_api.config.dtk_post_process_adhocevents emod_api.config.dtk_pre_process_adhocevents emod_api.config.dtk_pre_process_w5ml emod_api.config.from_overrides emod_api.config.from_poi_and_binary emod_api.config.from_schema emod_api.config.schema_to_config emod_api.demographics emod_api.demographics.BaseInputFile emod_api.demographics.Demographics emod_api.demographics.DemographicsGenerator emod_api.demographics.DemographicsInputDataParsers emod_api.demographics.DemographicsTemplates emod_api.demographics.Node emod_api.demographics.PreDefinedDistributions emod_api.demographics.PropertiesAndAttributes emod_api.demographics.Updateable emod_api.demographics.demographics_utils emod_api.demographics.grid_construction emod_api.interventions emod_api.interventions.ccdl emod_api.interventions.ccdl_viz emod_api.interventions.common emod_api.interventions.import_pressure emod_api.interventions.migration emod_api.interventions.node_multiplier emod_api.interventions.outbreak emod_api.interventions.simple_vaccine emod_api.interventions.utils emod_api.legacy emod_api.legacy.plotAllCharts emod_api.migration emod_api.migration.client emod_api.migration.client.client emod_api.migration.migration emod_api.schema emod_api.schema.dtk_post_process_schema emod_api.schema.get_schema emod_api.serialization emod_api.serialization.CensusAndModPop emod_api.serialization.SerializedPopulation emod_api.serialization.dtkFileSupport emod_api.serialization.dtkFileTools emod_api.serialization.dtkFileUtility emod_api.spatialreports emod_api.spatialreports.plot_spat_means emod_api.spatialreports.spatial emod_api.tabularoutput emod_api.weather emod_api.weather.weather emod_api.campaign emod_api.multidim_plotter emod_api.peek_camp emod_api.schema_to_class glossary plotters resolving references... done writing... done copying images... [ 20%] images/fertility_over_time_doc.png copying images... [ 40%] images/sweep_plot.png copying images... [ 60%] images/spat_plot.png copying images... [ 80%] images/prop_plot.png copying images... [100%] images/colormap_plot.png copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in ../_readthedocs/pdf. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emod-api/checkouts/latest/_readthedocs/pdf/_static/searchtools.js [rtd-command-info] start-time: 2023-06-08T19:06:54.890345Z, end-time: 2023-06-08T19:06:54.954982Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2023-06-08T19:06:55.143168Z, end-time: 2023-06-08T19:07:01.506822Z, duration: 6, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emod-api -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emod-api-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file institute-for-disease-modeling-emod-api.idx (./institute-for-disease-modeling-emod-api.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] [1] [2] Chapter 1. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4] Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 246--251 []\T1/qtm/m/n/10 Sure. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 309--312 []\T1/qtm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 313--316 []\T1/qtm/m/n/10 python -m [7] LaTeX Warning: Hyper reference `emod_api.channelreports.channels:emod_api.chann elreports.channels.Header' on page 8 undefined on input line 1. [8] [9] [10] Underfull \hbox (badness 10000) in paragraph at lines 874--877 []\T1/qtm/m/n/10 con-fig = json.load(open(^^Pdefault_config.json^^Q), ob-ject_h ook=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (23.04372pt too wide) in paragraph at lines 883--883 []\T1/qtm/m/it/10 path_to_schema\T1/qtm/m/n/10 , Overfull \hbox (37.0137pt too wide) in paragraph at lines 883--883 \T1/qtm/m/it/10 schema_node=True\T1/qtm/m/n/10 , Overfull \hbox (13.74374pt too wide) in paragraph at lines 883--883 \T1/qtm/m/it/10 as_rod=False\T1/qtm/m/n/10 , Overfull \hbox (40.01373pt too wide) in paragraph at lines 883--883 \T1/qtm/m/it/10 put_filename=None\T1/txtt/m/n/10 )| Overfull \hbox (70.57379pt too wide) in paragraph at lines 898--898 \T1/qtm/m/it/10 put_filename=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 default_config.j son\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (13.51376pt too wide) in paragraph at lines 898--898 \T1/qtm/m/it/10 schema_node=True\T1/txtt/m/n/10 )| Overfull \hbox (53.72368pt too wide) in paragraph at lines 928--928 []\T1/qtm/m/it/10 config_path=None\T1/qtm/m/n/10 , Overfull \hbox (30.34369pt too wide) in paragraph at lines 928--928 \T1/qtm/m/it/10 set_fn=None\T1/qtm/m/n/10 , Overfull \hbox (19.35367pt too wide) in paragraph at lines 928--928 \T1/qtm/m/it/10 fig=None\T1/txtt/m/n/10 )| [11] Overfull \hbox (36.61365pt too wide) in paragraph at lines 963--963 []\T1/qtm/m/it/10 config_path\T1/qtm/m/n/10 , Overfull \hbox (13.23366pt too wide) in paragraph at lines 963--963 \T1/qtm/m/it/10 set_fn\T1/qtm/m/n/10 , Overfull \hbox (4.76366pt too wide) in paragraph at lines 963--963 \T1/qtm/m/it/10 con- Overfull \hbox (42.7586pt too wide) in paragraph at lines 963--963 \T1/qtm/m/it/10 fig_out_path\T1/txtt/m/n/10 )| [12] Underfull \hbox (badness 10000) in paragraph at lines 1156--1159 []\T1/qtm/m/n/10 builder = s2c.SchemaConfigBuilder( [13] LaTeX Warning: Hyper reference `emod_api.config.from_schema:emod_api.config.fro m_schema.SchemaConfigBuilder' on page 14 undefined on input line 1181. [14] LaTeX Warning: Hyper reference `emod_api.demographics.BaseInputFile:emod_api.de mographics.BaseInputFile.BaseInputFile' on page 15 undefined on input line 1319 . [15] [16] Overfull \hbox (2.44467pt too wide) in paragraph at lines 1534--1534 []\T1/qtm/m/it/10 crude_birth_rate=] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) Overfull \hbox (377.44386pt too wide) in paragraph at lines 2102--2102 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (349.59387pt too wide) in paragraph at lines 2102--2102 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox (5.45383pt too wide) in paragraph at lines 2102--2102 \T1/qtm/m/it/10 res_in_arcsec=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 custom\TS1/qtm/ m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (35.91386pt too wide) in paragraph at lines 2102--2102 \T1/qtm/m/it/10 node_id_from_lat_long=False\T1/txtt/m/n/10 )| [21] Overfull \hbox (309.19406pt too wide) in paragraph at lines 2203--2203 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (281.34407pt too wide) in paragraph at lines 2203--2203 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox (9.76408pt too wide) in paragraph at lines 2203--2203 \T1/qtm/m/it/10 load_other_columns_as_attributes=False\T1/qtm/m/n/10 , [22] Overfull \hbox (282.94414pt too wide) in paragraph at lines 2282--2282 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (255.09415pt too wide) in paragraph at lines 2282--2282 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] [23] Overfull \hbox (34.91383pt too wide) in paragraph at lines 2370--2370 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (13.9139pt too wide) in paragraph at lines 2382--2382 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (34.55377pt too wide) in paragraph at lines 2388--2388 \T1/qtm/m/it/10 tra_data_columns=[]\T1/qtm/m/n/10 , Overfull \hbox (66.41374pt too wide) in paragraph at lines 2388--2388 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| [24] LaTeX Warning: Hyper reference `emod_api.demographics.DemographicsTemplates:emo d_api.demographics.DemographicsTemplates.CrudeRate' on page 25 undefined on inp ut line 2414. LaTeX Warning: Hyper reference `emod_api.demographics.DemographicsTemplates:emo d_api.demographics.DemographicsTemplates.CrudeRate' on page 25 undefined on inp ut line 2423. Underfull \hbox (badness 10000) in paragraph at lines 2467--2470 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 2497--2500 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 2520--2523 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [25] [26] LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualAttributes' on page 27 u ndefined on input line 2691. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualProperties' on page 27 u ndefined on input line 2691. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.NodeAttributes' on page 27 undefin ed on input line 2691. Overfull \hbox (43.43935pt too wide) in paragraph at lines 2691--2691 \T1/qtm/m/it/10 tional[][][\T1/qtm/m/n/10 emod_api.demographics.PropertiesAndAt tributes.IndividualAttributes\T1/qtm/m/it/10 ] Overfull \hbox (44.23935pt too wide) in paragraph at lines 2691--2691 \T1/qtm/m/it/10 tional[][][\T1/qtm/m/n/10 emod_api.demographics.PropertiesAndAt tributes.IndividualProperties\T1/qtm/m/it/10 ] Overfull \hbox (23.78935pt too wide) in paragraph at lines 2691--2691 \T1/qtm/m/it/10 tional[][][\T1/qtm/m/n/10 emod_api.demographics.PropertiesAndAt tributes.NodeAttributes\T1/qtm/m/it/10 ] LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 27 undefined on input line 2693. LaTeX Warning: Hyper reference `emod_api.demographics.Node:emod_api.demographic s.Node.Node' on page 27 undefined on input line 2773. [27] LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 28 undefined on input line 2857. LaTeX Warning: Hyper reference `emod_api.demographics.PropertiesAndAttributes:e mod_api.demographics.PropertiesAndAttributes.IndividualProperty' on page 28 und efined on input line 2870. Overfull \hbox (221.87881pt too wide) in paragraph at lines 2870--2870 \T1/qtm/m/it/10 tional[][][\T1/qtm/m/n/10 emod_api.demographics.PropertiesAndAt tributes.IndividualProperty\T1/qtm/m/it/10 ] LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 28 undefined on input line 2872. Overfull \hbox (29.17384pt too wide) in paragraph at lines 2903--2903 []\T1/qtm/m/it/10 age_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 age_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 age_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (9.17384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 age_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (36.28386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 lence_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 lence_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 lence_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 nity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 nity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 nity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 risk_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 risk_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 risk_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (89.17386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 tion_heterogeneity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 tion_heterogeneity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (29.62386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution_male=None\T1/qtm/m/n/10 , Overfull \hbox (36.54384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution_female=None\T1/qtm/m/n/10 , Overfull \hbox (7.93384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution=None\T1/txtt/m/n/10 )| LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 28 undefined on input line 2905. [28] LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 29 undefined on input line 2911. LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 29 undefined on input line 2926. LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 29 undefined on input line 2947. [29] LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 30 undefined on input line 2968. Overfull \hbox (10.98395pt too wide) in paragraph at lines 3002--3002 \T1/qtm/m/it/10 tial_vectors_per_species=None\T1/qtm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.demographics.Updateable:emod_api.demog raphics.Updateable.Updateable' on page 30 undefined on input line 3004. [30] [31] Underfull \hbox (badness 5578) in paragraph at lines 3221--3224 []\T1/qtm/m/n/10 Cre-ate a static de-mo-graph-ics based on the de-mo-graph-ics file spec-i-fied in the con-fig file of the LaTeX Warning: Hyper reference `emod_api.demographics.demographics_utils:emod_a pi.demographics.demographics_utils.set_static_demographics' on page 32 undefine d on input line 3253. [32] [33] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 34 undefined on input line 3442. Overfull \hbox (5.21407pt too wide) in paragraph at lines 3451--3451 \T1/qtm/m/it/10 Node_Selection_Type=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 DISTANCE_ ONLY\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 34 undefined on input line 3485. LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 34 undefined on input line 3520. [34] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 35 undefined on input line 3563. LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 35 undefined on input line 3618. [35] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 36 undefined on input line 3697. Underfull \hbox (badness 10000) in paragraph at lines 3716--3718 []\T1/txtt/bx/n/10 IP. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Target_Property_Value. The value part of the new key[]value pair Underfull \hbox (badness 10000) in paragraph at lines 3728--3730 []\T1/txtt/bx/n/10 Target_Property_Value. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Dail y_Probability. The daily probability that Underfull \hbox (badness 10000) in paragraph at lines 3732--3734 []\T1/txtt/bx/n/10 Daily_Probability. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Maximum_ Duration. The maximum amount of time Underfull \hbox (badness 10000) in paragraph at lines 3732--3734 \T1/txtt/m/sl/10 individuals have to move to a new group. This timing works in Underfull \hbox (badness 10000) in paragraph at lines 3736--3738 []\T1/txtt/bx/n/10 group. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Revert. The number o f days before an individual moves back to Underfull \hbox (badness 10000) in paragraph at lines 3740--3742 []\T1/txtt/bx/n/10 policy. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Intervention_Name. Optional Intervention_Name. Useful if Underfull \hbox (badness 10000) in paragraph at lines 3748--3750 []\T1/txtt/bx/n/10 expired. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Event_Trigger_Expi red. Optional broadcast trigger to be LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 36 undefined on input line 3760. [36] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 37 undefined on input line 3846. [37] [38] LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 39 undefined on input line 3960. LaTeX Warning: Hyper reference `emod_api.schema_to_class:emod_api.schema_to_cla ss.ReadOnlyDict' on page 39 undefined on input line 4028. Underfull \hbox (badness 10000) in paragraph at lines 4055--4057 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [39] Overfull \hbox (2.75383pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 ip_targeting=None\T1/qtm/m/n/10 , Overfull \hbox (10.51382pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 get_age_max=45625\T1/qtm/m/n/10 , Overfull \hbox (29.36382pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 get_residents_only=False\T1/qtm/m/n/10 , Overfull \hbox (24.73378pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 check_at_trigger=False\T1/txtt/m/n/10 )| Underfull \hbox (badness 10000) in paragraph at lines 4109--4111 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [40] [41] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 []\T1/qtm/m/n/10 {^^PDu-ra-tion_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DIST RIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 \T1/qtm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 \T1/qtm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 \T1/qtm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- [45] Underfull \hbox (badness 10000) in paragraph at lines 4611--4615 []\T1/qtm/m/n/10 {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTIO N^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4611--4615 \T1/qtm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 4611--4615 \T1/qtm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- Overfull \hbox (17.85501pt too wide) in paragraph at lines 4667--4672 \T1/qtm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (55.02502pt too wide) in paragraph at lines 4667--4672 \T1/qtm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4673--4679 []\T1/qtm/m/n/10 du-ra- ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4702 ...{CONST(ANT)}] \leavevmode\begin{itemize} [46] [47] [48] [49] [50] Underfull \hbox (badness 10000) in paragraph at lines 5236--5240 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [51] [52] LaTeX Warning: Hyper reference `emod_api.migration.migration:emod_api.migration .migration.Migration' on page 53 undefined on input line 5536. Overfull \hbox (57.54393pt too wide) in paragraph at lines 5536--5536 \T1/qtm/m/it/10 emod_api.migration.migration.Migration| [53] [54] [55] [56] LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileSupport:emod_api. serialization.dtkFileSupport.SerialObject' on page 57 undefined on input line 5 966. LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileSupport:emod_api. serialization.dtkFileSupport.SerialObject' on page 57 undefined on input line 5 997. [57] LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileTools:emod_api.se rialization.dtkFileTools.DtkFile' on page 58 undefined on input line 6117. LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileTools:emod_api.se rialization.dtkFileTools.DtkFile' on page 58 undefined on input line 6132. LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileTools:emod_api.se rialization.dtkFileTools.DtkFile' on page 58 undefined on input line 6156. LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileTools:emod_api.se rialization.dtkFileTools.DtkFileV3' on page 58 undefined on input line 6180. LaTeX Warning: Hyper reference `emod_api.serialization.dtkFileTools:emod_api.se rialization.dtkFileTools.DtkFileV4' on page 58 undefined on input line 6189. [58] LaTeX Warning: Hyper reference `emod_api.spatialreports.spatial:emod_api.spatia lreports.spatial.SpatialNode' on page 59 undefined on input line 1. [59] [60] LaTeX Warning: Hyper reference `emod_api.weather.weather:emod_api.weather.weath er.Metadata' on page 61 undefined on input line 1. LaTeX Warning: Hyper reference `emod_api.weather.weather:emod_api.weather.weath er.WeatherNode' on page 61 undefined on input line 1. [61] Underfull \hbox (badness 6842) in paragraph at lines 6712--6715 []\T1/qtm/m/n/10 Set the (path to) the schema file. And re-set all cam-paign va ri-ables. This is es-sen-tially a [62] [63] [64] Chapter 4. [65] [66] Chapter 5. [67] [68] Chapter 6. LaTeX Warning: Hyper reference `emod_api.channelreports.plot_icj_means:module-e mod_api.channelreports.plot_icj_means' on page 69 undefined on input line 7054. Underfull \hbox (badness 10000) in paragraph at lines 7068--7070 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_icj_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [[]t [69] [70 <./sweep_plot.png>] Chapter 7. LaTeX Warning: Hyper reference `emod_api.spatialreports.plot_spat_means:module- emod_api.spatialreports.plot_spat_means' on page 71 undefined on input line 710 6. Underfull \hbox (badness 10000) in paragraph at lines 7119--7121 []\T1/txtt/m/n/10 python []m emod_api.spatialreports.plot_spat_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [71] [72 <./spat_plot.png>] Chapter 8. Underfull \hbox (badness 10000) in paragraph at lines 7156--7158 []\T1/txtt/m/n/10 python []m emod_api.channelreports.pplot_prop_report.py [[]h] [[]c channelName] [[]p PRIMARY] [73] [74 <./prop_plot.png>] Chapter 9. LaTeX Warning: Hyper reference `emod_api.multidim_plotter:module-emod_api.multi dim_plotter' on page 75 undefined on input line 7219. [75] [76 <./colormap_plot.png>] LaTeX Warning: Reference `emod_api:module-emod_api' on page 77 undefined on inp ut line 7298. LaTeX Warning: Reference `emod_api.campaign:module-emod_api.campaign' on page 7 7 undefined on input line 7299. LaTeX Warning: Reference `emod_api.channelreports:module-emod_api.channelreport s' on page 77 undefined on input line 7300. LaTeX Warning: Reference `emod_api.channelreports.channels:module-emod_api.chan nelreports.channels' on page 77 undefined on input line 7301. LaTeX Warning: Reference `emod_api.channelreports.plot_icj_means:module-emod_ap i.channelreports.plot_icj_means' on page 77 undefined on input line 7302. LaTeX Warning: Reference `emod_api.channelreports.plot_prop_report:module-emod_ api.channelreports.plot_prop_report' on page 77 undefined on input line 7303. LaTeX Warning: Reference `emod_api.channelreports.utils:module-emod_api.channel reports.utils' on page 77 undefined on input line 7304. LaTeX Warning: Reference `emod_api.config:module-emod_api.config' on page 77 un defined on input line 7305. LaTeX Warning: Reference `emod_api.config.default_from_schema:module-emod_api.c onfig.default_from_schema' on page 77 undefined on input line 7306. LaTeX Warning: Reference `emod_api.config.default_from_schema_no_validation:mod ule-emod_api.config.default_from_schema_no_validation' on page 77 undefined on input line 7307. Overfull \hbox (29.87175pt too wide) in paragraph at lines 7307--7308 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/ 10 , LaTeX Warning: Reference `emod_api.config.dtk_post_process_adhocevents:module-e mod_api.config.dtk_post_process_adhocevents' on page 77 undefined on input line 7308. Overfull \hbox (3.62183pt too wide) in paragraph at lines 7308--7309 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , LaTeX Warning: Reference `emod_api.config.dtk_pre_process_adhocevents:module-em od_api.config.dtk_pre_process_adhocevents' on page 77 undefined on input line 7 309. Underfull \hbox (badness 10000) in paragraph at lines 7309--7310 []\T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , LaTeX Warning: Reference `emod_api.config.dtk_pre_process_w5ml:module-emod_api. config.dtk_pre_process_w5ml' on page 77 undefined on input line 7310. LaTeX Warning: Reference `emod_api.config.from_overrides:module-emod_api.config .from_overrides' on page 77 undefined on input line 7311. LaTeX Warning: Reference `emod_api.config.from_poi_and_binary:module-emod_api.c onfig.from_poi_and_binary' on page 77 undefined on input line 7312. LaTeX Warning: Reference `emod_api.config.from_schema:module-emod_api.config.fr om_schema' on page 77 undefined on input line 7313. LaTeX Warning: Reference `emod_api.config.schema_to_config:module-emod_api.conf ig.schema_to_config' on page 77 undefined on input line 7314. LaTeX Warning: Reference `emod_api.demographics:module-emod_api.demographics' o n page 77 undefined on input line 7315. LaTeX Warning: Reference `emod_api.demographics.BaseInputFile:module-emod_api.d emographics.BaseInputFile' on page 77 undefined on input line 7316. LaTeX Warning: Reference `emod_api.demographics.Demographics:module-emod_api.de mographics.Demographics' on page 77 undefined on input line 7317. LaTeX Warning: Reference `emod_api.demographics.demographics_utils:module-emod_ api.demographics.demographics_utils' on page 77 undefined on input line 7318. LaTeX Warning: Reference `emod_api.demographics.DemographicsGenerator:module-em od_api.demographics.DemographicsGenerator' on page 77 undefined on input line 7 319. Underfull \hbox (badness 10000) in paragraph at lines 7319--7320 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , LaTeX Warning: Reference `emod_api.demographics.DemographicsInputDataParsers:mo dule-emod_api.demographics.DemographicsInputDataParsers' on page 77 undefined o n input line 7320. Overfull \hbox (35.12173pt too wide) in paragraph at lines 7320--7321 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n /10 , LaTeX Warning: Reference `emod_api.demographics.DemographicsTemplates:module-em od_api.demographics.DemographicsTemplates' on page 77 undefined on input line 7 321. Underfull \hbox (badness 10000) in paragraph at lines 7321--7322 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , LaTeX Warning: Reference `emod_api.demographics.grid_construction:module-emod_a pi.demographics.grid_construction' on page 77 undefined on input line 7322. LaTeX Warning: Reference `emod_api.demographics.Node:module-emod_api.demographi cs.Node' on page 77 undefined on input line 7323. LaTeX Warning: Reference `emod_api.demographics.PreDefinedDistributions:module- emod_api.demographics.PreDefinedDistributions' on page 77 undefined on input li ne 7324. Overfull \hbox (8.87181pt too wide) in paragraph at lines 7324--7325 []\T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , LaTeX Warning: Reference `emod_api.demographics.PropertiesAndAttributes:module- emod_api.demographics.PropertiesAndAttributes' on page 77 undefined on input li ne 7325. Overfull \hbox (8.87181pt too wide) in paragraph at lines 7325--7326 []\T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , LaTeX Warning: Reference `emod_api.demographics.Updateable:module-emod_api.demo graphics.Updateable' on page 77 undefined on input line 7326. LaTeX Warning: Reference `emod_api.interventions:module-emod_api.interventions' on page 77 undefined on input line 7327. LaTeX Warning: Reference `emod_api.interventions.ccdl:module-emod_api.intervent ions.ccdl' on page 77 undefined on input line 7328. LaTeX Warning: Reference `emod_api.interventions.ccdl_viz:module-emod_api.inter ventions.ccdl_viz' on page 77 undefined on input line 7329. LaTeX Warning: Reference `emod_api.interventions.common:module-emod_api.interve ntions.common' on page 77 undefined on input line 7330. LaTeX Warning: Reference `emod_api.interventions.import_pressure:module-emod_ap i.interventions.import_pressure' on page 77 undefined on input line 7331. LaTeX Warning: Reference `emod_api.interventions.migration:module-emod_api.inte rventions.migration' on page 77 undefined on input line 7332. LaTeX Warning: Reference `emod_api.interventions.node_multiplier:module-emod_ap i.interventions.node_multiplier' on page 77 undefined on input line 7333. LaTeX Warning: Reference `emod_api.interventions.outbreak:module-emod_api.inter ventions.outbreak' on page 77 undefined on input line 7334. LaTeX Warning: Reference `emod_api.interventions.simple_vaccine:module-emod_api .interventions.simple_vaccine' on page 77 undefined on input line 7335. LaTeX Warning: Reference `emod_api.interventions.utils:module-emod_api.interven tions.utils' on page 77 undefined on input line 7336. LaTeX Warning: Reference `emod_api.legacy:module-emod_api.legacy' on page 77 un defined on input line 7337. LaTeX Warning: Reference `emod_api.legacy.plotAllCharts:module-emod_api.legacy. plotAllCharts' on page 77 undefined on input line 7338. LaTeX Warning: Reference `emod_api.migration:module-emod_api.migration' on page 77 undefined on input line 7339. LaTeX Warning: Reference `emod_api.migration.client:module-emod_api.migration.c lient' on page 77 undefined on input line 7340. LaTeX Warning: Reference `emod_api.migration.client.client:module-emod_api.migr ation.client.client' on page 77 undefined on input line 7341. LaTeX Warning: Reference `emod_api.migration.migration:module-emod_api.migratio n.migration' on page 77 undefined on input line 7342. LaTeX Warning: Reference `emod_api.multidim_plotter:module-emod_api.multidim_pl otter' on page 77 undefined on input line 7343. LaTeX Warning: Reference `emod_api.peek_camp:module-emod_api.peek_camp' on page 77 undefined on input line 7344. LaTeX Warning: Reference `emod_api.schema:module-emod_api.schema' on page 77 un defined on input line 7345. LaTeX Warning: Reference `emod_api.schema.dtk_post_process_schema:module-emod_a pi.schema.dtk_post_process_schema' on page 77 undefined on input line 7346. LaTeX Warning: Reference `emod_api.schema.get_schema:module-emod_api.schema.get _schema' on page 77 undefined on input line 7347. LaTeX Warning: Reference `emod_api.schema_to_class:module-emod_api.schema_to_cl ass' on page 77 undefined on input line 7348. LaTeX Warning: Reference `emod_api.serialization:module-emod_api.serialization' on page 77 undefined on input line 7349. LaTeX Warning: Reference `emod_api.serialization.CensusAndModPop:module-emod_ap i.serialization.CensusAndModPop' on page 77 undefined on input line 7350. LaTeX Warning: Reference `emod_api.serialization.dtkFileSupport:module-emod_api .serialization.dtkFileSupport' on page 77 undefined on input line 7351. LaTeX Warning: Reference `emod_api.serialization.dtkFileTools:module-emod_api.s erialization.dtkFileTools' on page 77 undefined on input line 7352. LaTeX Warning: Reference `emod_api.serialization.dtkFileUtility:module-emod_api .serialization.dtkFileUtility' on page 77 undefined on input line 7353. LaTeX Warning: Reference `emod_api.serialization.SerializedPopulation:module-em od_api.serialization.SerializedPopulation' on page 77 undefined on input line 7 354. Underfull \hbox (badness 10000) in paragraph at lines 7354--7355 []\T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , LaTeX Warning: Reference `emod_api.spatialreports:module-emod_api.spatialreport s' on page 77 undefined on input line 7355. LaTeX Warning: Reference `emod_api.spatialreports.plot_spat_means:module-emod_a pi.spatialreports.plot_spat_means' on page 77 undefined on input line 7356. LaTeX Warning: Reference `emod_api.spatialreports.spatial:module-emod_api.spati alreports.spatial' on page 77 undefined on input line 7357. LaTeX Warning: Reference `emod_api.tabularoutput:module-emod_api.tabularoutput' on page 77 undefined on input line 7358. LaTeX Warning: Reference `emod_api.weather:module-emod_api.weather' on page 77 undefined on input line 7359. LaTeX Warning: Reference `emod_api.weather.weather:module-emod_api.weather.weat her' on page 77 undefined on input line 7360. [77] No file institute-for-disease-modeling-emod-api.ind. (./institute-for-disease-modeling-emod-api.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-emod-api.o ut' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (81 pages, 191653 9 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emod-api.ind' from line 'No file institute-for-disease-modeling-emod-api.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: List of undefined refs and citations: Reference `emod_api.campaign:module-emod_api.campaign' on page 77 undefined on input line 7299 Reference `emod_api.channelreports.channels:module-emod_api.channelreports.channels' on page 77 undefined on input line 7301 Reference `emod_api.channelreports.plot_icj_means:module-emod_api.channelreports.plot_icj_means' on page 77 undefined on input line 7302 Reference `emod_api.channelreports.plot_prop_report:module-emod_api.channelreports.plot_prop_report' on page 77 undefined on input line 7303 Reference `emod_api.channelreports.utils:module-emod_api.channelreports.utils' on page 77 undefined on input line 7304 Reference `emod_api.channelreports:module-emod_api.channelreports' on page 77 undefined on input line 7300 Reference `emod_api.config.default_from_schema:module-emod_api.config.default_from_schema' on page 77 undefined on input line 7306 Reference `emod_api.config.default_from_schema_no_validation:module-emod_api.config.default_from_schema_no_validation' on page 77 undefined on input line 7307 Reference `emod_api.config.dtk_post_process_adhocevents:module-emod_api.config.dtk_post_process_adhocevents' on page 77 undefined on input line 7308 Reference `emod_api.config.dtk_pre_process_adhocevents:module-emod_api.config.dtk_pre_process_adhocevents' on page 77 undefined on input line 7309 Reference `emod_api.config.dtk_pre_process_w5ml:module-emod_api.config.dtk_pre_process_w5ml' on page 77 undefined on input line 7310 Reference `emod_api.config.from_overrides:module-emod_api.config.from_overrides' on page 77 undefined on input line 7311 Reference `emod_api.config.from_poi_and_binary:module-emod_api.config.from_poi_and_binary' on page 77 undefined on input line 7312 Reference `emod_api.config.from_schema:module-emod_api.config.from_schema' on page 77 undefined on input line 7313 Reference `emod_api.config.schema_to_config:module-emod_api.config.schema_to_config' on page 77 undefined on input line 7314 Reference `emod_api.config:module-emod_api.config' on page 77 undefined on input line 7305 Reference `emod_api.demographics.BaseInputFile:module-emod_api.demographics.BaseInputFile' on page 77 undefined on input line 7316 Reference `emod_api.demographics.Demographics:module-emod_api.demographics.Demographics' on page 77 undefined on input line 7317 Reference `emod_api.demographics.DemographicsGenerator:module-emod_api.demographics.DemographicsGenerator' on page 77 undefined on input line 7319 Reference `emod_api.demographics.DemographicsInputDataParsers:module-emod_api.demographics.DemographicsInputDataParsers' on page 77 undefined on input line 7320 Reference `emod_api.demographics.DemographicsTemplates:module-emod_api.demographics.DemographicsTemplates' on page 77 undefined on input line 7321 Reference `emod_api.demographics.Node:module-emod_api.demographics.Node' on page 77 undefined on input line 7323 Reference `emod_api.demographics.PreDefinedDistributions:module-emod_api.demographics.PreDefinedDistributions' on page 77 undefined on input line 7324 Reference `emod_api.demographics.PropertiesAndAttributes:module-emod_api.demographics.PropertiesAndAttributes' on page 77 undefined on input line 7325 Reference `emod_api.demographics.Updateable:module-emod_api.demographics.Updateable' on page 77 undefined on input line 7326 Reference `emod_api.demographics.demographics_utils:module-emod_api.demographics.demographics_utils' on page 77 undefined on input line 7318 Reference `emod_api.demographics.grid_construction:module-emod_api.demographics.grid_construction' on page 77 undefined on input line 7322 Reference `emod_api.demographics:module-emod_api.demographics' on page 77 undefined on input line 7315 Reference `emod_api.interventions.ccdl:module-emod_api.interventions.ccdl' on page 77 undefined on input line 7328 Reference `emod_api.interventions.ccdl_viz:module-emod_api.interventions.ccdl_viz' on page 77 undefined on input line 7329 Reference `emod_api.interventions.common:module-emod_api.interventions.common' on page 77 undefined on input line 7330 Reference `emod_api.interventions.import_pressure:module-emod_api.interventions.import_pressure' on page 77 undefined on input line 7331 Reference `emod_api.interventions.migration:module-emod_api.interventions.migration' on page 77 undefined on input line 7332 Reference `emod_api.interventions.node_multiplier:module-emod_api.interventions.node_multiplier' on page 77 undefined on input line 7333 Reference `emod_api.interventions.outbreak:module-emod_api.interventions.outbreak' on page 77 undefined on input line 7334 Reference `emod_api.interventions.simple_vaccine:module-emod_api.interventions.simple_vaccine' on page 77 undefined on input line 7335 Reference `emod_api.interventions.utils:module-emod_api.interventions.utils' on page 77 undefined on input line 7336 Reference `emod_api.interventions:module-emod_api.interventions' on page 77 undefined on input line 7327 Reference `emod_api.legacy.plotAllCharts:module-emod_api.legacy.plotAllCharts' on page 77 undefined on input line 7338 Reference `emod_api.legacy:module-emod_api.legacy' on page 77 undefined on input line 7337 Reference `emod_api.migration.client.client:module-emod_api.migration.client.client' on page 77 undefined on input line 7341 Reference `emod_api.migration.client:module-emod_api.migration.client' on page 77 undefined on input line 7340 Reference `emod_api.migration.migration:module-emod_api.migration.migration' on page 77 undefined on input line 7342 Reference `emod_api.migration:module-emod_api.migration' on page 77 undefined on input line 7339 Reference `emod_api.multidim_plotter:module-emod_api.multidim_plotter' on page 77 undefined on input line 7343 Reference `emod_api.peek_camp:module-emod_api.peek_camp' on page 77 undefined on input line 7344 Reference `emod_api.schema.dtk_post_process_schema:module-emod_api.schema.dtk_post_process_schema' on page 77 undefined on input line 7346 Reference `emod_api.schema.get_schema:module-emod_api.schema.get_schema' on page 77 undefined on input line 7347 Reference `emod_api.schema:module-emod_api.schema' on page 77 undefined on input line 7345 Reference `emod_api.schema_to_class:module-emod_api.schema_to_class' on page 77 undefined on input line 7348 Reference `emod_api.serialization.CensusAndModPop:module-emod_api.serialization.CensusAndModPop' on page 77 undefined on input line 7350 Reference `emod_api.serialization.SerializedPopulation:module-emod_api.serialization.SerializedPopulation' on page 77 undefined on input line 7354 Reference `emod_api.serialization.dtkFileSupport:module-emod_api.serialization.dtkFileSupport' on page 77 undefined on input line 7351 Reference `emod_api.serialization.dtkFileTools:module-emod_api.serialization.dtkFileTools' on page 77 undefined on input line 7352 Reference `emod_api.serialization.dtkFileUtility:module-emod_api.serialization.dtkFileUtility' on page 77 undefined on input line 7353 Reference `emod_api.serialization:module-emod_api.serialization' on page 77 undefined on input line 7349 Reference `emod_api.spatialreports.plot_spat_means:module-emod_api.spatialreports.plot_spat_means' on page 77 undefined on input line 7356 Reference `emod_api.spatialreports.spatial:module-emod_api.spatialreports.spatial' on page 77 undefined on input line 7357 Reference `emod_api.spatialreports:module-emod_api.spatialreports' on page 77 undefined on input line 7355 Reference `emod_api.tabularoutput:module-emod_api.tabularoutput' on page 77 undefined on input line 7358 Reference `emod_api.weather.weather:module-emod_api.weather.weather' on page 77 undefined on input line 7360 Reference `emod_api.weather:module-emod_api.weather' on page 77 undefined on input line 7359 Reference `emod_api:module-emod_api' on page 77 undefined on input line 7298 Latexmk: Summary of warnings: Latex failed to resolve 63 reference(s) Rule 'makeindex institute-for-disease-modeling-emod-api.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emod-api.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emod-api.ind" "institute-for-disease-modeling-emod-api.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emod-api.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emod-api.idx....done (560 entries accepted, 0 rejected). Sorting entries.......done (5488 comparisons). Generating output file institute-for-disease-modeling-emod-api.ind....done (1048 lines written, 0 warnings). Output written in institute-for-disease-modeling-emod-api.ind. Transcript written in institute-for-disease-modeling-emod-api.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emod-api.aux' 'institute-for-disease-modeling-emod-api.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emod-api-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file institute-for-disease-modeling-emod-api.idx (./institute-for-disease-modeling-emod-api.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./institute-for-disease-modeling-emod-api.out) (./institute-for-disease-modeling-emod-api.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-emod-api.toc) [1] [2] [1] [2] Chapter 1. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4] Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 246--251 []\T1/qtm/m/n/10 Sure. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 309--312 []\T1/qtm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 313--316 []\T1/qtm/m/n/10 python -m [7] [8] [9] [10] Underfull \hbox (badness 10000) in paragraph at lines 874--877 []\T1/qtm/m/n/10 con-fig = json.load(open(^^Pdefault_config.json^^Q), ob-ject_h ook=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (23.04372pt too wide) in paragraph at lines 883--883 []\T1/qtm/m/it/10 path_to_schema\T1/qtm/m/n/10 , Overfull \hbox (37.0137pt too wide) in paragraph at lines 883--883 \T1/qtm/m/it/10 schema_node=True\T1/qtm/m/n/10 , Overfull \hbox (13.74374pt too wide) in paragraph at lines 883--883 \T1/qtm/m/it/10 as_rod=False\T1/qtm/m/n/10 , Overfull \hbox (40.01373pt too wide) in paragraph at lines 883--883 \T1/qtm/m/it/10 put_filename=None\T1/txtt/m/n/10 )| Overfull \hbox (70.57379pt too wide) in paragraph at lines 898--898 \T1/qtm/m/it/10 put_filename=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 default_config.j son\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (13.51376pt too wide) in paragraph at lines 898--898 \T1/qtm/m/it/10 schema_node=True\T1/txtt/m/n/10 )| Overfull \hbox (53.72368pt too wide) in paragraph at lines 928--928 []\T1/qtm/m/it/10 config_path=None\T1/qtm/m/n/10 , Overfull \hbox (30.34369pt too wide) in paragraph at lines 928--928 \T1/qtm/m/it/10 set_fn=None\T1/qtm/m/n/10 , Overfull \hbox (19.35367pt too wide) in paragraph at lines 928--928 \T1/qtm/m/it/10 fig=None\T1/txtt/m/n/10 )| [11] Overfull \hbox (36.61365pt too wide) in paragraph at lines 963--963 []\T1/qtm/m/it/10 config_path\T1/qtm/m/n/10 , Overfull \hbox (13.23366pt too wide) in paragraph at lines 963--963 \T1/qtm/m/it/10 set_fn\T1/qtm/m/n/10 , Overfull \hbox (4.76366pt too wide) in paragraph at lines 963--963 \T1/qtm/m/it/10 con- Overfull \hbox (42.7586pt too wide) in paragraph at lines 963--963 \T1/qtm/m/it/10 fig_out_path\T1/txtt/m/n/10 )| [12] Underfull \hbox (badness 10000) in paragraph at lines 1156--1159 []\T1/qtm/m/n/10 builder = s2c.SchemaConfigBuilder( [13] [14] [15] [16] Overfull \hbox (2.44467pt too wide) in paragraph at lines 1534--1534 []\T1/qtm/m/it/10 crude_birth_rate=] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) Overfull \hbox (377.44386pt too wide) in paragraph at lines 2102--2102 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (349.59387pt too wide) in paragraph at lines 2102--2102 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox (5.45383pt too wide) in paragraph at lines 2102--2102 \T1/qtm/m/it/10 res_in_arcsec=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 custom\TS1/qtm/ m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (35.91386pt too wide) in paragraph at lines 2102--2102 \T1/qtm/m/it/10 node_id_from_lat_long=False\T1/txtt/m/n/10 )| [21] Overfull \hbox (309.19406pt too wide) in paragraph at lines 2203--2203 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (281.34407pt too wide) in paragraph at lines 2203--2203 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox (9.76408pt too wide) in paragraph at lines 2203--2203 \T1/qtm/m/it/10 load_other_columns_as_attributes=False\T1/qtm/m/n/10 , [22] Overfull \hbox (282.94414pt too wide) in paragraph at lines 2282--2282 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (255.09415pt too wide) in paragraph at lines 2282--2282 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] [23] Overfull \hbox (34.91383pt too wide) in paragraph at lines 2370--2370 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (13.9139pt too wide) in paragraph at lines 2382--2382 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (34.55377pt too wide) in paragraph at lines 2388--2388 \T1/qtm/m/it/10 tra_data_columns=[]\T1/qtm/m/n/10 , Overfull \hbox (66.41374pt too wide) in paragraph at lines 2388--2388 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| [24] Underfull \hbox (badness 10000) in paragraph at lines 2467--2470 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 2497--2500 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 2520--2523 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [25] [26] Overfull \hbox (43.13435pt too wide) in paragraph at lines 2691--2691 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualAttributes[][]\T1/qtm/m/it/10 ] Overfull \hbox (43.93436pt too wide) in paragraph at lines 2691--2691 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperties[][]\T1/qtm/m/it/10 ] Overfull \hbox (23.48436pt too wide) in paragraph at lines 2691--2691 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.NodeAttributes[][]\T1/qtm/m/it/10 ] [27] Overfull \hbox (221.57382pt too wide) in paragraph at lines 2870--2870 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperty[][]\T1/qtm/m/it/10 ] Overfull \hbox (29.17384pt too wide) in paragraph at lines 2903--2903 []\T1/qtm/m/it/10 age_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 age_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 age_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (9.17384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 age_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (36.28386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 lence_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 lence_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 lence_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 nity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 nity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 nity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 risk_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 risk_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 risk_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (89.17386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 tion_heterogeneity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 tion_heterogeneity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (29.62386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution_male=None\T1/qtm/m/n/10 , Overfull \hbox (36.54384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution_female=None\T1/qtm/m/n/10 , Overfull \hbox (7.93384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution=None\T1/txtt/m/n/10 )| [28] [29] Overfull \hbox (10.98395pt too wide) in paragraph at lines 3002--3002 \T1/qtm/m/it/10 tial_vectors_per_species=None\T1/qtm/m/n/10 , [30] [31] Underfull \hbox (badness 5578) in paragraph at lines 3221--3224 []\T1/qtm/m/n/10 Cre-ate a static de-mo-graph-ics based on the de-mo-graph-ics file spec-i-fied in the con-fig file of the [32] [33] Overfull \hbox (5.21407pt too wide) in paragraph at lines 3451--3451 \T1/qtm/m/it/10 Node_Selection_Type=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 DISTANCE_ ONLY\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [34] [35] Underfull \hbox (badness 10000) in paragraph at lines 3716--3718 []\T1/txtt/bx/n/10 IP. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Target_Property_Value. The value part of the new key[]value pair Underfull \hbox (badness 10000) in paragraph at lines 3728--3730 []\T1/txtt/bx/n/10 Target_Property_Value. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Dail y_Probability. The daily probability that Underfull \hbox (badness 10000) in paragraph at lines 3732--3734 []\T1/txtt/bx/n/10 Daily_Probability. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Maximum_ Duration. The maximum amount of time Underfull \hbox (badness 10000) in paragraph at lines 3732--3734 \T1/txtt/m/sl/10 individuals have to move to a new group. This timing works in Underfull \hbox (badness 10000) in paragraph at lines 3736--3738 []\T1/txtt/bx/n/10 group. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Revert. The number o f days before an individual moves back to Underfull \hbox (badness 10000) in paragraph at lines 3740--3742 []\T1/txtt/bx/n/10 policy. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Intervention_Name. Optional Intervention_Name. Useful if Underfull \hbox (badness 10000) in paragraph at lines 3748--3750 []\T1/txtt/bx/n/10 expired. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Event_Trigger_Expi red. Optional broadcast trigger to be [36] [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 4055--4057 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [39] Overfull \hbox (2.75383pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 ip_targeting=None\T1/qtm/m/n/10 , Overfull \hbox (10.51382pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 get_age_max=45625\T1/qtm/m/n/10 , Overfull \hbox (29.36382pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 get_residents_only=False\T1/qtm/m/n/10 , Overfull \hbox (24.73378pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 check_at_trigger=False\T1/txtt/m/n/10 )| Underfull \hbox (badness 10000) in paragraph at lines 4109--4111 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [40] [41] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 []\T1/qtm/m/n/10 {^^PDu-ra-tion_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DIST RIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 \T1/qtm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 \T1/qtm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 \T1/qtm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- [45] Underfull \hbox (badness 10000) in paragraph at lines 4611--4615 []\T1/qtm/m/n/10 {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTIO N^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4611--4615 \T1/qtm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 4611--4615 \T1/qtm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- Overfull \hbox (17.85501pt too wide) in paragraph at lines 4667--4672 \T1/qtm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (55.02502pt too wide) in paragraph at lines 4667--4672 \T1/qtm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4673--4679 []\T1/qtm/m/n/10 du-ra- ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4702 ...{CONST(ANT)}] \leavevmode\begin{itemize} [46] [47] [48] [49] [50] Underfull \hbox (badness 10000) in paragraph at lines 5236--5240 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [51] [52] Overfull \hbox (57.54393pt too wide) in paragraph at lines 5536--5536 [][]\T1/qtm/m/it/10 emod_api.migration.migration.Migration[][]| [53] [54] [55] [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 6842) in paragraph at lines 6712--6715 []\T1/qtm/m/n/10 Set the (path to) the schema file. And re-set all cam-paign va ri-ables. This is es-sen-tially a [62] [63] [64] Chapter 4. [65] [66] Chapter 5. [67] [68] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 7068--7070 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_icj_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [[]t [69] [70 <./sweep_plot.png>] Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 7119--7121 []\T1/txtt/m/n/10 python []m emod_api.spatialreports.plot_spat_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [71] [72 <./spat_plot.png>] Chapter 8. Underfull \hbox (badness 10000) in paragraph at lines 7156--7158 []\T1/txtt/m/n/10 python []m emod_api.channelreports.pplot_prop_report.py [[]h] [[]c channelName] [[]p PRIMARY] [73] [74 <./prop_plot.png>] Chapter 9. [75] [76 <./colormap_plot.png>] Overfull \hbox (29.87175pt too wide) in paragraph at lines 7307--7308 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/ 10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 7308--7309 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7309--7310 []\T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7319--7320 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 7320--7321 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 7321--7322 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7324--7325 []\T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7325--7326 []\T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7354--7355 []\T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , [77] (./institute-for-disease-modeling-emod-api.ind [78] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/txtt/m/n/10 accumulate_channel_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (85.18242pt too wide) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.P ropertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/txtt/m/n/10 add_migration_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (137.68227pt too wide) in paragraph at lines 15--17 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (49.44226pt too wide) in paragraph at lines 17--19 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/txtt/m/n/10 AddAgeDependentTransmission() Overfull \hbox (33.46252pt too wide) in paragraph at lines 19--21 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/txtt/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (33.46252pt too wide) in paragraph at lines 21--23 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/txtt/m/n/10 AgeStructureUNWPP() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 23--25 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/txtt/m/n/10 AgesYears \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Overfull \hbox (31.54231pt too wide) in paragraph at lines 28--30 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Contents Overfull \hbox (26.68231pt too wide) in paragraph at lines 30--32 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.10747pt too wide) in paragraph at lines 32--34 \T1/qtm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 34--36 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (73.8823pt too wide) in paragraph at lines 40--42 []\T1/txtt/m/n/10 apply_overlay() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 apply_to_defaults_or_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 42--44 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 arcsec_to_deg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 44--46 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Overfull \hbox (51.92223pt too wide) in paragraph at lines 46--48 []\T1/txtt/m/n/10 as_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (30.00221pt too wide) in paragraph at lines 48--50 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Channel Overfull \hbox (26.10222pt too wide) in paragraph at lines 50--52 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/txtt/m/n/10 author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 63--65 []\T1/txtt/m/n/10 BaseInputFile \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 63--65 \T1/qtm/m/it/10 emod_api.demographics.BaseInputFile\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 65--66 []\T1/txtt/m/n/10 basicNode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 67--69 []\T1/txtt/m/n/10 BroadcastEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 69--71 []\T1/txtt/m/n/10 BroadcastEventToOtherNodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 72--74 []\T1/txtt/m/n/10 byte_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 call_plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [79] Underfull \hbox (badness 10000) in paragraph at lines 79--81 []\T1/txtt/m/n/10 change_individual_property() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 83--85 []\T1/txtt/m/n/10 change_individual_property_scheduled() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 85--87 []\T1/txtt/m/n/10 change_individual_property_triggered() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/txtt/m/n/10 change_ser_pop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 87--89 \T1/qtm/m/it/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 ), Overfull \hbox (46.67224pt too wide) in paragraph at lines 90--92 []\T1/txtt/m/n/10 channel_names \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channe lreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 ChannelReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (20.42232pt too wide) in paragraph at lines 94--96 []\T1/txtt/m/n/10 channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrepo rts.channels.ChannelReport Overfull \hbox (9.38226pt too wide) in paragraph at lines 96--98 []\T1/txtt/m/n/10 chunk_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 98--100 []\T1/txtt/m/n/10 chunk_sizes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 chunks \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/txtt/m/n/10 collect() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 102--104 \T1/qtm/m/it/10 emod_api.channelreports.plot_icj_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 collect() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 104--106 \T1/qtm/m/it/10 emod_api.spatialreports.plot_spat_means\T1/qtm/m/n/10 ), Overfull \hbox (29.63231pt too wide) in paragraph at lines 106--108 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.EllZeeFour Overfull \hbox (13.76231pt too wide) in paragraph at lines 108--110 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Snappy Overfull \hbox (43.15228pt too wide) in paragraph at lines 110--112 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 114--116 []\T1/txtt/m/n/10 compressed \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 116--118 []\T1/txtt/m/n/10 compression \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 ConstantDistribution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.58746pt too wide) in paragraph at lines 118--120 \T1/qtm/m/it/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 construct() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 120--122 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 ConstructNodesFromDataFrame() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 122--124 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (92.52237pt too wide) in paragraph at lines 124--126 []\T1/txtt/m/n/10 copy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. PreDefinedDistributions.ConstantDistribution Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Weather Overfull \hbox (58.51736pt too wide) in paragraph at lines 130--132 []\T1/txtt/m/n/10 CrudeRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.d emographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports. spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 141--142 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.weather .WeatherNode prop- Overfull \hbox (1.23224pt too wide) in paragraph at lines 142--144 []\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weat her.weather.Metadata Overfull \hbox (13.67229pt too wide) in paragraph at lines 148--150 []\T1/txtt/m/n/10 DatavalueCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 155--156 []\T1/txtt/m/n/10 decorate_actual_iv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/txtt/m/n/10 decorate_actual_iv_impl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (14.49223pt too wide) in paragraph at lines 158--160 []\T1/txtt/m/n/10 default_population \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Node.Node Overfull \hbox (15.1475pt too wide) in paragraph at lines 160--162 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/txtt/m/n/10 DelayedIntervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 164--166 []\T1/txtt/m/n/10 Demographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 164--166 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 166--168 []\T1/txtt/m/n/10 DemographicsGenerator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Overfull \hbox (16.85251pt too wide) in paragraph at lines 166--168 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/txtt/m/n/10 DemographicsOverlay \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 168--170 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/txtt/m/n/10 DemographicsType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (16.85251pt too wide) in paragraph at lines 170--172 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/txtt/m/n/10 disable_warnings() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [80] Underfull \hbox (badness 10000) in paragraph at lines 174--176 []\T1/txtt/m/n/10 display() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 174--176 \T1/qtm/m/it/10 emod_api.channelreports.plot_icj_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 176--178 []\T1/txtt/m/n/10 do_mapping_from_events() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 176--178 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 179--181 []\T1/txtt/m/n/10 dtk_to_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.17227pt too wide) in paragraph at lines 181--183 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 183--185 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 186--188 []\T1/txtt/m/n/10 DtkFile.Contents \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 188--190 []\T1/txtt/m/n/10 DtkFile.Objects \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 190--192 []\T1/txtt/m/n/10 DtkFileV1 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 192--194 []\T1/txtt/m/n/10 DtkFileV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 194--196 []\T1/txtt/m/n/10 DtkFileV2.NodesV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 196--198 []\T1/txtt/m/n/10 DtkFileV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 198--200 []\T1/txtt/m/n/10 DtkFileV3.NodesV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 200--202 []\T1/txtt/m/n/10 DtkFileV4 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 202--204 []\T1/txtt/m/n/10 DtkFileV5 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 204--206 []\T1/txtt/m/n/10 DtkHeader \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (48.0174pt too wide) in paragraph at lines 206--208 []\T1/txtt/m/n/10 DtkRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.dem ographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 208--210 []\T1/txtt/m/n/10 duplicate_nodeID_check() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 208--210 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (19.2323pt too wide) in paragraph at lines 213--215 []\T1/txtt/m/n/10 EllZeeFour \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. serialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (27.37175pt too wide) in paragraph at lines 233--234 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (1.12183pt too wide) in paragraph at lines 235--236 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents Overfull \hbox (32.62173pt too wide) in paragraph at lines 259--260 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers Overfull \hbox (6.37181pt too wide) in paragraph at lines 267--268 []\T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions Overfull \hbox (6.37181pt too wide) in paragraph at lines 269--270 []\T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes [81] Underfull \hbox (badness 10000) in paragraph at lines 342--344 []\T1/txtt/m/n/10 EveryoneInitiallySusceptible() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 342--344 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 344--346 []\T1/txtt/m/n/10 examine_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 350--352 []\T1/txtt/m/n/10 FAMILY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 352--354 []\T1/txtt/m/n/10 FEMALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 354--356 []\T1/txtt/m/n/10 fill_nodes_legacy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (46.2575pt too wide) in paragraph at lines 354--356 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (31.2124pt too wide) in paragraph at lines 358--360 []\T1/txtt/m/n/10 find() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.se rialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 360--362 []\T1/txtt/m/n/10 flattenConfig() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (76.32239pt too wide) in paragraph at lines 362--364 []\T1/txtt/m/n/10 flush() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 366--368 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 371--373 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 371--373 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 373--375 []\T1/txtt/m/n/10 from_demog_and_param_gravity() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (113.91234pt too wide) in paragraph at lines 377--379 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (180.06232pt too wide) in paragraph at lines 379--381 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (197.29231pt too wide) in paragraph at lines 381--383 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution [82] Overfull \hbox (203.09232pt too wide) in paragraph at lines 383--385 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (93.66234pt too wide) in paragraph at lines 385--387 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 387--389 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather. weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 389--391 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 389--391 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 391--393 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 391--393 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 393--394 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 394--396 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 394--396 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 396--397 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 397--399 []\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 397--399 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 399--401 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 401--403 []\T1/txtt/m/n/10 FullRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 401--403 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (13.67229pt too wide) in paragraph at lines 406--408 []\T1/txtt/m/n/10 GenderDataType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 408--410 []\T1/txtt/m/n/10 generate_demographics() Overfull \hbox (115.38252pt too wide) in paragraph at lines 408--410 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (69.64224pt too wide) in paragraph at lines 410--412 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.BaseInputFile.BaseInputFile Overfull \hbox (73.8823pt too wide) in paragraph at lines 412--414 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Overfull \hbox (85.3922pt too wide) in paragraph at lines 414--416 []\T1/txtt/m/n/10 generate_headers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.BaseInputFile.BaseInputFile Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/txtt/m/n/10 generate_metadata() Overfull \hbox (115.38252pt too wide) in paragraph at lines 416--418 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (161.05228pt too wide) in paragraph at lines 418--420 []\T1/txtt/m/n/10 generate_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 422--424 []\T1/txtt/m/n/10 get_bbox() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 422--424 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 424--426 []\T1/txtt/m/n/10 get_class_with_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 426--428 []\T1/txtt/m/n/10 get_colour_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (44.89249pt too wide) in paragraph at lines 428--430 \T1/qtm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 430--432 []\T1/txtt/m/n/10 get_default_config_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 430--432 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 432--434 []\T1/txtt/m/n/10 get_default_for_complex_type() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (93.54231pt too wide) in paragraph at lines 434--436 []\T1/txtt/m/n/10 get_dtk_rate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.DemographicsTemplates.CrudeRate Underfull \hbox (badness 10000) in paragraph at lines 437--439 []\T1/txtt/m/n/10 get_fert_dist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 437--439 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 439--441 []\T1/txtt/m/n/10 get_fert_dist_from_rates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 439--441 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 441--443 []\T1/txtt/m/n/10 get_grid_cell_id() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 441--443 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 444--446 []\T1/txtt/m/n/10 get_next_individual_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 444--446 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 446--448 []\T1/txtt/m/n/10 get_next_infection_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 446--448 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 448--450 []\T1/txtt/m/n/10 get_nickname_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.63237pt too wide) in paragraph at lines 450--452 []\T1/txtt/m/n/10 get_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 452--454 []\T1/txtt/m/n/10 get_node_ids_from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 452--454 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Overfull \hbox (34.67223pt too wide) in paragraph at lines 454--456 []\T1/txtt/m/n/10 get_node_offsets() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 456--458 []\T1/txtt/m/n/10 get_node_pops_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 456--458 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 458--460 []\T1/txtt/m/n/10 get_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 458--460 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 461--463 []\T1/txtt/m/n/10 get_report_channels() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule [83] Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 get_shape_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 469--471 []\T1/txtt/m/n/10 get_waning_from_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 471--473 []\T1/txtt/m/n/10 get_waning_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 473--475 []\T1/txtt/m/n/10 get_waning_from_points() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 475--477 []\T1/txtt/m/n/10 get_xpix_ypix() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (9.92235pt too wide) in paragraph at lines 482--484 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreport s.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 484--486 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 5985) in paragraph at lines 493--495 []\T1/txtt/m/n/10 id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports.sp atial.SpatialNode prop- Underfull \hbox (badness 10000) in paragraph at lines 496--498 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 498--500 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Overfull \hbox (34.6714pt too wide) in paragraph at lines 500--502 []\T1/txtt/m/n/10 IDREF_GRUMP1DEGREE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 502--504 []\T1/txtt/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 502--504 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 504--506 []\T1/txtt/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 504--506 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (3.1715pt too wide) in paragraph at lines 506--508 []\T1/txtt/m/n/10 IDREF_LEGACY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 510--512 []\T1/txtt/m/n/10 IndividualAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 510--512 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Overfull \hbox (14.13748pt too wide) in paragraph at lines 512--514 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 514--516 []\T1/txtt/m/n/10 IndividualAttributes.FertilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 514--516 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 516--518 []\T1/txtt/m/n/10 IndividualAttributes.MortalityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 516--518 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Overfull \hbox (16.87178pt too wide) in paragraph at lines 518--520 []\T1/txtt/m/n/10 IndividualAttributes.SusceptibilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 518--520 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 520--522 []\T1/txtt/m/n/10 IndividualProperties \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 520--522 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 522--524 []\T1/txtt/m/n/10 IndividualProperty \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 522--524 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 524--526 []\T1/txtt/m/n/10 infer_natural_mortality() Overfull \hbox (33.46252pt too wide) in paragraph at lines 524--526 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 526--528 []\T1/txtt/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 526--528 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 528--530 []\T1/txtt/m/n/10 InitAgeUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 528--530 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 530--532 []\T1/txtt/m/n/10 InitPrevUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 530--532 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 532--534 []\T1/txtt/m/n/10 InitRiskExponential() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 532--534 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 534--536 []\T1/txtt/m/n/10 InitRiskLogNormal() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 534--536 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 536--538 []\T1/txtt/m/n/10 InitRiskUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 536--538 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 538--540 []\T1/txtt/m/n/10 InitSusceptConstant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 538--540 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (29.42224pt too wide) in paragraph at lines 540--542 []\T1/txtt/m/n/10 InterpolationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.mi gration.migration.Migration Overfull \hbox (2.72234pt too wide) in paragraph at lines 542--544 []\T1/txtt/m/n/10 interval \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Overfull \hbox (3.1715pt too wide) in paragraph at lines 544--546 []\T1/txtt/m/n/10 INTERVENTION \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 551--553 []\T1/txtt/m/n/10 lat_lon_from_nodeid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 554--556 []\T1/txtt/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 554--556 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 556--558 []\T1/txtt/m/n/10 list_channels_and_ips() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule [84] Underfull \hbox (badness 10000) in paragraph at lines 558--560 []\T1/txtt/m/n/10 load_default_config_as_rod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 558--560 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 560--562 []\T1/txtt/m/n/10 LOCAL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migr ation.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 563--565 []\T1/txtt/m/n/10 lon_lat_2_point() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 563--565 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Overfull \hbox (26.81233pt too wide) in paragraph at lines 568--570 []\T1/txtt/m/n/10 main() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.ch annelreports.plot_prop_report\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 571--573 []\T1/txtt/m/n/10 make_config_from_poi() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 571--573 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 573--575 []\T1/txtt/m/n/10 make_config_from_poi_and_config_dict() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 573--575 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 575--577 []\T1/txtt/m/n/10 make_config_from_poi_and_config_file() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 575--577 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 577--579 []\T1/txtt/m/n/10 make_config_from_poi_and_schema() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 579--580 []\T1/txtt/m/n/10 MALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 583--584 []\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Overfull \hbox (8.4223pt too wide) in paragraph at lines 585--587 []\T1/txtt/m/n/10 MigrationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrat ion.migration.Migration Overfull \hbox (2.62189pt too wide) in paragraph at lines 593--594 []| \T1/txtt/m/n/10 emod_api.channelreports.plot_prop_report\T1/qtm/m/n/10 , Overfull \hbox (49.87175pt too wide) in paragraph at lines 597--598 []| \T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 598--599 []| \T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 599--600 []| \T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (2.62189pt too wide) in paragraph at lines 608--609 []| \T1/txtt/m/n/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 609--610 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (55.12173pt too wide) in paragraph at lines 610--611 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m /n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 611--612 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 612--613 []| \T1/txtt/m/n/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 , Overfull \hbox (28.87181pt too wide) in paragraph at lines 614--615 []| \T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (28.87181pt too wide) in paragraph at lines 615--616 []| \T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 621--622 []| \T1/txtt/m/n/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 623--624 []| \T1/txtt/m/n/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 636--637 []| \T1/txtt/m/n/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 640--641 []| \T1/txtt/m/n/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 , [85] Overfull \hbox (18.37184pt too wide) in paragraph at lines 644--645 []| \T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 646--647 []| \T1/txtt/m/n/10 emod_api.spatialreports.plot_spat_means\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 651--653 []\T1/txtt/m/n/10 MortalityRateByAge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Overfull \hbox (15.1475pt too wide) in paragraph at lines 651--653 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 653--655 []\T1/txtt/m/n/10 MortalityStructureNigeriaDHS() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 653--655 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 655--657 []\T1/txtt/m/n/10 MultiInterventionDistributor() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 660--662 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 660--662 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 662--664 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 662--664 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 664--666 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 666--668 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 666--668 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 668--670 []\T1/txtt/m/n/10 new_intervention2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 668--670 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 670--672 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 670--672 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 672--674 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 672--674 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 674--676 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 676--678 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 676--678 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 678--680 []\T1/txtt/m/n/10 new_scheduled_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 678--680 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Overfull \hbox (47.63237pt too wide) in paragraph at lines 682--684 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Overfull \hbox (13.2223pt too wide) in paragraph at lines 684--686 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 689--691 []\T1/txtt/m/n/10 node_ID_from_lat_long() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 689--691 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (37.1324pt too wide) in paragraph at lines 691--693 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographic s.Demographics.Demographics Overfull \hbox (2.72234pt too wide) in paragraph at lines 693--695 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Underfull \hbox (badness 6808) in paragraph at lines 695--696 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 696--697 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Underfull \hbox (badness 10000) in paragraph at lines 697--699 []\T1/txtt/m/n/10 NodeAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 697--699 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 700--702 []\T1/txtt/m/n/10 NodeCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/txtt/m/n/10 nodeid_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (21.38245pt too wide) in paragraph at lines 706--708 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.D emographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 709--711 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (65.82242pt too wide) in paragraph at lines 711--713 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 713--715 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 717--719 []\T1/txtt/m/n/10 nodes_for_DTK() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 719--721 []\T1/txtt/m/n/10 NoInitialPrevalence() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 719--721 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (62.70738pt too wide) in paragraph at lines 721--723 []\T1/txtt/m/n/10 NoRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (3.48235pt too wide) in paragraph at lines 723--725 []\T1/txtt/m/n/10 NullPtr \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.ser ialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 725--727 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (10.35226pt too wide) in paragraph at lines 727--729 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 729--731 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport [86] Overfull \hbox (20.85223pt too wide) in paragraph at lines 731--733 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 736--738 []\T1/txtt/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 736--738 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (34.6714pt too wide) in paragraph at lines 743--745 []\T1/txtt/m/n/10 PIECEWISE_CONSTANT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Overfull \hbox (21.05736pt too wide) in paragraph at lines 745--747 []\T1/txtt/m/n/10 plot() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.sp atialreports.plot_spat_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 747--749 []\T1/txtt/m/n/10 plot_from_sql() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 749--751 []\T1/txtt/m/n/10 plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 751--752 []\T1/txtt/m/n/10 plotBunch() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 752--754 []\T1/txtt/m/n/10 plotCompareFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/txtt/m/n/10 plotOneFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 756--758 []\T1/txtt/m/n/10 point_2_grid_cell_id_lookup() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 756--758 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 759--761 []\T1/txtt/m/n/10 process_cmd_line() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 761--763 []\T1/txtt/m/n/10 property_report_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 763--765 []\T1/txtt/m/n/10 PropertyValueChanger() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 771--773 []\T1/txtt/m/n/10 read_json_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/txtt/m/n/10 recurser() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 774--776 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (36.17227pt too wide) in paragraph at lines 778--780 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 780--782 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 782--784 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 784--786 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 786--788 []\T1/txtt/m/n/10 res_in_degrees \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 793--795 []\T1/txtt/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 793--795 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 796--798 []\T1/txtt/m/n/10 save_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 798--800 []\T1/txtt/m/n/10 ScheduledCampaignEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 800--802 []\T1/txtt/m/n/10 schema_to_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 802--804 []\T1/txtt/m/n/10 schema_to_config_subnode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 802--804 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 804--806 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 806--808 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 810--812 []\T1/txtt/m/n/10 seed_by_coverage() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (26.63243pt too wide) in paragraph at lines 812--814 []\T1/txtt/m/n/10 send() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 814--816 []\T1/txtt/m/n/10 SerializedPopulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 814--816 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 816--818 []\T1/txtt/m/n/10 SerialObject \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 818--820 []\T1/txtt/m/n/10 set_beautifiers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 820--822 []\T1/txtt/m/n/10 set_demog_distributions() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 820--822 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 822--824 []\T1/txtt/m/n/10 set_growing_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 822--824 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 824--826 []\T1/txtt/m/n/10 set_immune_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 824--826 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), [87] Overfull \hbox (161.05228pt too wide) in paragraph at lines 826--828 []\T1/txtt/m/n/10 set_resolution() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 828--830 []\T1/txtt/m/n/10 set_risk_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 828--830 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (6.99231pt too wide) in paragraph at lines 830--832 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_ to_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 833--835 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 833--835 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 835--837 []\T1/txtt/m/n/10 set_static_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 835--837 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 837--839 []\T1/txtt/m/n/10 SetAgeDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 837--839 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (68.63231pt too wide) in paragraph at lines 839--841 []\T1/txtt/m/n/10 SetBirthRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Demographics.Demographics Overfull \hbox (84.38226pt too wide) in paragraph at lines 841--843 []\T1/txtt/m/n/10 SetConstantRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.de mographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 843--845 []\T1/txtt/m/n/10 SetConstantSusceptibility() Overfull \hbox (33.46252pt too wide) in paragraph at lines 843--845 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 845--847 []\T1/txtt/m/n/10 SetDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 845--847 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 847--849 []\T1/txtt/m/n/10 SetDefaultIndividualAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 847--849 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 849--851 []\T1/txtt/m/n/10 SetDefaultIndividualProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 849--851 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 851--853 []\T1/txtt/m/n/10 SetDefaultNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 851--853 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 853--855 []\T1/txtt/m/n/10 SetDefaultProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 853--855 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 855--857 []\T1/txtt/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 855--857 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (1.12183pt too wide) in paragraph at lines 857--859 []\T1/txtt/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (33.46252pt too wide) in paragraph at lines 857--859 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 859--861 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamics() Overfull \hbox (33.46252pt too wide) in paragraph at lines 859--861 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 861--863 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamicsFromWorldBank() Overfull \hbox (33.46252pt too wide) in paragraph at lines 861--863 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 863--865 []\T1/txtt/m/n/10 SetFertilityOverTimeFromParams() Overfull \hbox (33.46252pt too wide) in paragraph at lines 863--865 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 865--867 []\T1/txtt/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 865--867 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 867--869 []\T1/txtt/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 867--869 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 869--871 []\T1/txtt/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 869--871 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 871--873 []\T1/txtt/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 871--873 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 873--875 []\T1/txtt/m/n/10 SetInitialAgeExponential() Overfull \hbox (33.46252pt too wide) in paragraph at lines 873--875 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 875--877 []\T1/txtt/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (33.46252pt too wide) in paragraph at lines 875--877 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 877--879 []\T1/txtt/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (33.46252pt too wide) in paragraph at lines 877--879 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 879--881 []\T1/txtt/m/n/10 SetMigrationPattern() Overfull \hbox (33.46252pt too wide) in paragraph at lines 879--881 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 881--883 []\T1/txtt/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 881--883 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 883--885 []\T1/txtt/m/n/10 SetMortalityDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 883--885 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 885--887 []\T1/txtt/m/n/10 SetMortalityOverTimeFromData() Overfull \hbox (33.46252pt too wide) in paragraph at lines 885--887 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (89.63225pt too wide) in paragraph at lines 887--889 []\T1/txtt/m/n/10 SetMortalityRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 889--891 []\T1/txtt/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 889--891 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 891--893 []\T1/txtt/m/n/10 SetOneWayMigration() Overfull \hbox (33.46252pt too wide) in paragraph at lines 891--893 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 893--895 []\T1/txtt/m/n/10 SetOverdispersion() Overfull \hbox (33.46252pt too wide) in paragraph at lines 893--895 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 895--897 []\T1/txtt/m/n/10 SetRoundTripMigration() Overfull \hbox (33.46252pt too wide) in paragraph at lines 895--897 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 897--899 []\T1/txtt/m/n/10 SetSimpleVitalDynamics() Overfull \hbox (33.46252pt too wide) in paragraph at lines 897--899 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (15.1475pt too wide) in paragraph at lines 899--901 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), [88] Overfull \hbox (14.49228pt too wide) in paragraph at lines 901--903 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV1 Overfull \hbox (14.49228pt too wide) in paragraph at lines 903--905 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV2 Overfull \hbox (14.49228pt too wide) in paragraph at lines 905--907 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV3 Underfull \hbox (badness 10000) in paragraph at lines 909--911 []\T1/txtt/m/n/10 SpatialReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 911--913 []\T1/txtt/m/n/10 StandardDiagnostic() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 913--915 []\T1/txtt/m/n/10 start \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Overfull \hbox (30.92229pt too wide) in paragraph at lines 915--917 []\T1/txtt/m/n/10 start_time \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (85.98161pt too wide) in paragraph at lines 919--921 []\T1/txtt/m/n/10 STATIC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. DemographicsGenerator.DemographicsType Overfull \hbox (25.6723pt too wide) in paragraph at lines 921--923 []\T1/txtt/m/n/10 step_size \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrep orts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 925--927 []\T1/txtt/m/n/10 StepFunctionSusceptibility() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 925--927 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (30.92229pt too wide) in paragraph at lines 932--934 []\T1/txtt/m/n/10 time_stamp \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (13.2223pt too wide) in paragraph at lines 936--938 []\T1/txtt/m/n/10 time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 938--940 []\T1/txtt/m/n/10 title \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreports .channels.Channel Overfull \hbox (20.42232pt too wide) in paragraph at lines 940--942 []\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrepo rts.channels.ChannelReport Overfull \hbox (42.38239pt too wide) in paragraph at lines 943--945 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.Demographics Overfull \hbox (74.09238pt too wide) in paragraph at lines 945--947 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 947--948 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Node.Node Overfull \hbox (108.27232pt too wide) in paragraph at lines 948--950 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PreDefinedDistributions.ConstantDistribution Overfull \hbox (103.41237pt too wide) in paragraph at lines 950--952 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (169.56235pt too wide) in paragraph at lines 952--954 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (186.79234pt too wide) in paragraph at lines 954--956 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution Overfull \hbox (192.59235pt too wide) in paragraph at lines 956--958 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (208.45236pt too wide) in paragraph at lines 958--960 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.SusceptibilityDistribution Overfull \hbox (106.18236pt too wide) in paragraph at lines 960--962 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualProperties Overfull \hbox (99.51236pt too wide) in paragraph at lines 962--964 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualProperty Overfull \hbox (83.16237pt too wide) in paragraph at lines 964--966 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.NodeAttributes Overfull \hbox (17.94235pt too wide) in paragraph at lines 966--968 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Updateable.Updateable Overfull \hbox (74.09238pt too wide) in paragraph at lines 968--970 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 970--972 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 972--974 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 974--975 []\T1/txtt/m/n/10 to_tuple() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 975--976 []\T1/txtt/m/n/10 Tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration prop- Underfull \hbox (badness 10000) in paragraph at lines 978--980 []\T1/txtt/m/n/10 triggered_campaign_delay_event() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (11.6218pt too wide) in paragraph at lines 980--982 []\T1/txtt/m/n/10 triggered_campaign_event_with_optional_delay() Underfull \hbox (badness 10000) in paragraph at lines 982--984 []\T1/txtt/m/n/10 TriggeredCampaignEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (40.13228pt too wide) in paragraph at lines 987--989 []\T1/txtt/m/n/10 uncompress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.seriali zation.dtkFileSupport.EllZeeFour Overfull \hbox (24.26228pt too wide) in paragraph at lines 989--991 []\T1/txtt/m/n/10 uncompress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.seriali zation.dtkFileSupport.Snappy Overfull \hbox (53.65225pt too wide) in paragraph at lines 991--993 []\T1/txtt/m/n/10 uncompress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.seriali zation.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 993--995 []\T1/txtt/m/n/10 uncompress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 995--997 []\T1/txtt/m/n/10 Uncompressed \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 997--999 []\T1/txtt/m/n/10 units \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreports .channels.Channel Overfull \hbox (12.69237pt too wide) in paragraph at lines 999--1001 []\T1/txtt/m/n/10 update() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographic s.Updateable.Updateable Overfull \hbox (11.73221pt too wide) in paragraph at lines 1001--1003 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.we ather.weather.Metadata [89] Overfull \hbox (6.7322pt too wide) in paragraph at lines 1003--1005 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.we ather.weather.Weather Overfull \hbox (11.43234pt too wide) in paragraph at lines 1005--1006 []\T1/txtt/m/n/10 Updateable \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. demographics.Updateable\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1006--1008 []\T1/txtt/m/n/10 uses_old_waning() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 1011--1013 []\T1/txtt/m/n/10 validate_res_in_arcsec() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 1011--1013 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1013--1015 []\T1/txtt/m/n/10 version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile Overfull \hbox (76.32239pt too wide) in paragraph at lines 1021--1023 []\T1/txtt/m/n/10 write() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Overfull \hbox (2.12732pt too wide) in paragraph at lines 1023--1024 []\T1/txtt/m/n/10 write() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/txtt/m/n/10 write_config_from_default_and_params() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (62.11249pt too wide) in paragraph at lines 1024--1026 \T1/qtm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/qt m/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1026--1028 []\T1/txtt/m/n/10 write_default_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 1028--1030 []\T1/txtt/m/n/10 write_default_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 1028--1030 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 1030--1032 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (23.72227pt too wide) in paragraph at lines 1032--1034 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatial reports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 1034--1036 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 1036--1037 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 1040--1042 []\T1/txtt/m/n/10 xpix_ypix_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (63.76735pt too wide) in paragraph at lines 1045--1047 []\T1/txtt/m/n/10 YearlyRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), [90]) (./institute-for-disease-modeling-emod-api.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-emod-api.o ut' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (94 pages, 197848 0 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emod-api.aux' 'institute-for-disease-modeling-emod-api.out' 'institute-for-disease-modeling-emod-api.toc' ------------ Run number 3 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emod-api" "emod-api-docs.tex"' ------------ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emod-api-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file institute-for-disease-modeling-emod-api.idx (./institute-for-disease-modeling-emod-api.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./institute-for-disease-modeling-emod-api.out) (./institute-for-disease-modeling-emod-api.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-emod-api.toc) [1] [2] [1] [2] Chapter 1. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4] Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 246--251 []\T1/qtm/m/n/10 Sure. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 309--312 []\T1/qtm/m/n/10 python -m Underfull \hbox (badness 10000) in paragraph at lines 313--316 []\T1/qtm/m/n/10 python -m [7] [8] [9] [10] Underfull \hbox (badness 10000) in paragraph at lines 874--877 []\T1/qtm/m/n/10 con-fig = json.load(open(^^Pdefault_config.json^^Q), ob-ject_h ook=s2c.ReadOnlyDict) os.remove( ^^Pde- Overfull \hbox (23.04372pt too wide) in paragraph at lines 883--883 []\T1/qtm/m/it/10 path_to_schema\T1/qtm/m/n/10 , Overfull \hbox (37.0137pt too wide) in paragraph at lines 883--883 \T1/qtm/m/it/10 schema_node=True\T1/qtm/m/n/10 , Overfull \hbox (13.74374pt too wide) in paragraph at lines 883--883 \T1/qtm/m/it/10 as_rod=False\T1/qtm/m/n/10 , Overfull \hbox (40.01373pt too wide) in paragraph at lines 883--883 \T1/qtm/m/it/10 put_filename=None\T1/txtt/m/n/10 )| Overfull \hbox (70.57379pt too wide) in paragraph at lines 898--898 \T1/qtm/m/it/10 put_filename=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 default_config.j son\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (13.51376pt too wide) in paragraph at lines 898--898 \T1/qtm/m/it/10 schema_node=True\T1/txtt/m/n/10 )| Overfull \hbox (53.72368pt too wide) in paragraph at lines 928--928 []\T1/qtm/m/it/10 config_path=None\T1/qtm/m/n/10 , Overfull \hbox (30.34369pt too wide) in paragraph at lines 928--928 \T1/qtm/m/it/10 set_fn=None\T1/qtm/m/n/10 , Overfull \hbox (19.35367pt too wide) in paragraph at lines 928--928 \T1/qtm/m/it/10 fig=None\T1/txtt/m/n/10 )| [11] Overfull \hbox (36.61365pt too wide) in paragraph at lines 963--963 []\T1/qtm/m/it/10 config_path\T1/qtm/m/n/10 , Overfull \hbox (13.23366pt too wide) in paragraph at lines 963--963 \T1/qtm/m/it/10 set_fn\T1/qtm/m/n/10 , Overfull \hbox (4.76366pt too wide) in paragraph at lines 963--963 \T1/qtm/m/it/10 con- Overfull \hbox (42.7586pt too wide) in paragraph at lines 963--963 \T1/qtm/m/it/10 fig_out_path\T1/txtt/m/n/10 )| [12] Underfull \hbox (badness 10000) in paragraph at lines 1156--1159 []\T1/qtm/m/n/10 builder = s2c.SchemaConfigBuilder( [13] [14] [15] [16] Overfull \hbox (2.44467pt too wide) in paragraph at lines 1534--1534 []\T1/qtm/m/it/10 crude_birth_rate=] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) Overfull \hbox (377.44386pt too wide) in paragraph at lines 2102--2102 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (349.59387pt too wide) in paragraph at lines 2102--2102 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox (5.45383pt too wide) in paragraph at lines 2102--2102 \T1/qtm/m/it/10 res_in_arcsec=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 custom\TS1/qtm/ m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (35.91386pt too wide) in paragraph at lines 2102--2102 \T1/qtm/m/it/10 node_id_from_lat_long=False\T1/txtt/m/n/10 )| [21] Overfull \hbox (309.19406pt too wide) in paragraph at lines 2203--2203 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (281.34407pt too wide) in paragraph at lines 2203--2203 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] Overfull \hbox (9.76408pt too wide) in paragraph at lines 2203--2203 \T1/qtm/m/it/10 load_other_columns_as_attributes=False\T1/qtm/m/n/10 , [22] Overfull \hbox (282.94414pt too wide) in paragraph at lines 2282--2282 \T1/qtm/m/it/10 tional[][][[][]Union[][][emod_api.dtk_tools.demographics.Demogr aphicsGeneratorConcern.DemographicsGeneratorConcern, Overfull \hbox (255.09415pt too wide) in paragraph at lines 2282--2282 [][]\T1/qtm/m/it/10 List[][][emod_api.dtk_tools.demographics.DemographicsGenera torConcern.DemographicsGeneratorConcern]]] [23] Overfull \hbox (34.91383pt too wide) in paragraph at lines 2370--2370 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (13.9139pt too wide) in paragraph at lines 2382--2382 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| Overfull \hbox (34.55377pt too wide) in paragraph at lines 2388--2388 \T1/qtm/m/it/10 tra_data_columns=[]\T1/qtm/m/n/10 , Overfull \hbox (66.41374pt too wide) in paragraph at lines 2388--2388 \T1/qtm/m/it/10 res=0.008333333333333333\T1/txtt/m/n/10 )| [24] Underfull \hbox (badness 10000) in paragraph at lines 2467--2470 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 2497--2500 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- Underfull \hbox (badness 10000) in paragraph at lines 2520--2523 []\T1/qtm/m/n/10 json ob-ject aka python dict that can be di-rectly passed to D e-mo-graph- [25] [26] Overfull \hbox (43.13435pt too wide) in paragraph at lines 2691--2691 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualAttributes[][]\T1/qtm/m/it/10 ] Overfull \hbox (43.93436pt too wide) in paragraph at lines 2691--2691 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperties[][]\T1/qtm/m/it/10 ] Overfull \hbox (23.48436pt too wide) in paragraph at lines 2691--2691 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.NodeAttributes[][]\T1/qtm/m/it/10 ] [27] Overfull \hbox (221.57382pt too wide) in paragraph at lines 2870--2870 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emod_api.demographics.PropertiesA ndAttributes.IndividualProperty[][]\T1/qtm/m/it/10 ] Overfull \hbox (29.17384pt too wide) in paragraph at lines 2903--2903 []\T1/qtm/m/it/10 age_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 age_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (14.17384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 age_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (9.17384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 age_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (36.28386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 lence_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 lence_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (21.28386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 lence_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 nity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 nity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 nity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (30.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 risk_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 risk_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (15.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 risk_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (89.17386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 tion_heterogeneity_distribution_flag=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 tion_heterogeneity_distribution1=None\T1/qtm/m/n/10 , Overfull \hbox (74.17386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 tion_heterogeneity_distribution2=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (5.18385pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution=None\T1/qtm/m/n/10 , Overfull \hbox (29.62386pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution_male=None\T1/qtm/m/n/10 , Overfull \hbox (36.54384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution_female=None\T1/qtm/m/n/10 , Overfull \hbox (7.93384pt too wide) in paragraph at lines 2903--2903 \T1/qtm/m/it/10 ity_distribution=None\T1/txtt/m/n/10 )| [28] [29] Overfull \hbox (10.98395pt too wide) in paragraph at lines 3002--3002 \T1/qtm/m/it/10 tial_vectors_per_species=None\T1/qtm/m/n/10 , [30] [31] Underfull \hbox (badness 5578) in paragraph at lines 3221--3224 []\T1/qtm/m/n/10 Cre-ate a static de-mo-graph-ics based on the de-mo-graph-ics file spec-i-fied in the con-fig file of the [32] [33] Overfull \hbox (5.21407pt too wide) in paragraph at lines 3451--3451 \T1/qtm/m/it/10 Node_Selection_Type=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 DISTANCE_ ONLY\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [34] [35] Underfull \hbox (badness 10000) in paragraph at lines 3716--3718 []\T1/txtt/bx/n/10 IP. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Target_Property_Value. The value part of the new key[]value pair Underfull \hbox (badness 10000) in paragraph at lines 3728--3730 []\T1/txtt/bx/n/10 Target_Property_Value. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Dail y_Probability. The daily probability that Underfull \hbox (badness 10000) in paragraph at lines 3732--3734 []\T1/txtt/bx/n/10 Daily_Probability. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Maximum_ Duration. The maximum amount of time Underfull \hbox (badness 10000) in paragraph at lines 3732--3734 \T1/txtt/m/sl/10 individuals have to move to a new group. This timing works in Underfull \hbox (badness 10000) in paragraph at lines 3736--3738 []\T1/txtt/bx/n/10 group. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Revert. The number o f days before an individual moves back to Underfull \hbox (badness 10000) in paragraph at lines 3740--3742 []\T1/txtt/bx/n/10 policy. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Intervention_Name. Optional Intervention_Name. Useful if Underfull \hbox (badness 10000) in paragraph at lines 3748--3750 []\T1/txtt/bx/n/10 expired. \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 Event_Trigger_Expi red. Optional broadcast trigger to be [36] [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 4055--4057 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [39] Overfull \hbox (2.75383pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 ip_targeting=None\T1/qtm/m/n/10 , Overfull \hbox (10.51382pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 get_age_max=45625\T1/qtm/m/n/10 , Overfull \hbox (29.36382pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 get_residents_only=False\T1/qtm/m/n/10 , Overfull \hbox (24.73378pt too wide) in paragraph at lines 4083--4083 \T1/qtm/m/it/10 check_at_trigger=False\T1/txtt/m/n/10 )| Underfull \hbox (badness 10000) in paragraph at lines 4109--4111 []\T1/txtt/bx/n/10 "Delay_Period_Exponential" \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 but without the distribution, which is [40] [41] [42] [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 []\T1/qtm/m/n/10 {^^PDu-ra-tion_Before_Leaving_Distribution^^Q:^^QGAUSSIAN_DIST RIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 \T1/qtm/m/n/10 ^^PDu-ra-tion_Before_Leaving_Gaussian_Mean^^Q: 14, ^^PDu- Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 \T1/qtm/m/n/10 ra-tion_Before_Leaving_Gaussian_Std_Dev^^Q 3} {^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4595--4600 \T1/qtm/m/n/10 tion_Before_Leaving_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, ^^PDu-ra- [45] Underfull \hbox (badness 10000) in paragraph at lines 4611--4615 []\T1/qtm/m/n/10 {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTIO N^^Q, ^^PDu-ra- Underfull \hbox (badness 10000) in paragraph at lines 4611--4615 \T1/qtm/m/n/10 tion_At_Node_Gaussian_Mean^^Q: 14, ^^PDu-ra-tion_At_Node_Gaussia n_Std_Dev^^Q Underfull \hbox (badness 10000) in paragraph at lines 4611--4615 \T1/qtm/m/n/10 3} {^^PDu-ra-tion_At_Node_Distribution^^Q:^^QPOISSON_DISTRIBUTIO N^^Q, ^^PDu-ra- Overfull \hbox (17.85501pt too wide) in paragraph at lines 4667--4672 \T1/qtm/m/n/10 from emod_api im-port cam-paign as camp dan = {^^PDu-ra-tion_At_ Node_Distribution^^Q:^^QPOISSON_DISTRIBUTION^^Q, Overfull \hbox (55.02502pt too wide) in paragraph at lines 4667--4672 \T1/qtm/m/n/10 ^^PDu-ra-tion_At_Node_Poisson_Mean^^Q 30} dbl = {^^PDu-ra-tion_B efore_Leaving_Distribution^^Q:^^QGAUSSIAN_DISTRIBUTION^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4673--4679 []\T1/qtm/m/n/10 du-ra- ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4702 ...{CONST(ANT)}] \leavevmode\begin{itemize} [46] [47] [48] [49] [50] Underfull \hbox (badness 10000) in paragraph at lines 5236--5240 []\T1/qtm/m/n/10 EMOD/DTK for-mat mi-gra-tion files (and as-so-ci-ated meta-dat a files) can be writ-ten with mi-gra- [51] [52] Overfull \hbox (57.54393pt too wide) in paragraph at lines 5536--5536 [][]\T1/qtm/m/it/10 emod_api.migration.migration.Migration[][]| [53] [54] [55] [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 6842) in paragraph at lines 6712--6715 []\T1/qtm/m/n/10 Set the (path to) the schema file. And re-set all cam-paign va ri-ables. This is es-sen-tially a [62] [63] [64] Chapter 4. [65] [66] Chapter 5. [67] [68] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 7068--7070 []\T1/txtt/m/n/10 python []m emod_api.channelreports.plot_icj_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [[]t [69] [70 <./sweep_plot.png>] Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 7119--7121 []\T1/txtt/m/n/10 python []m emod_api.spatialreports.plot_spat_means [[]h] [[]c CHANNEL] [[]e EXPERIMENT_ID] [71] [72 <./spat_plot.png>] Chapter 8. Underfull \hbox (badness 10000) in paragraph at lines 7156--7158 []\T1/txtt/m/n/10 python []m emod_api.channelreports.pplot_prop_report.py [[]h] [[]c channelName] [[]p PRIMARY] [73] [74 <./prop_plot.png>] Chapter 9. [75] [76 <./colormap_plot.png>] Overfull \hbox (29.87175pt too wide) in paragraph at lines 7307--7308 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/ 10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 7308--7309 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7309--7310 []\T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7319--7320 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 7320--7321 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 7321--7322 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7324--7325 []\T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (8.87181pt too wide) in paragraph at lines 7325--7326 []\T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7354--7355 []\T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , [77] (./institute-for-disease-modeling-emod-api.ind [78] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/txtt/m/n/10 accumulate_channel_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (85.18242pt too wide) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.P ropertiesAndAttributes.IndividualProperties Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/txtt/m/n/10 add_migration_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (137.68227pt too wide) in paragraph at lines 15--17 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.PropertiesAndAttributes.IndividualProperties Overfull \hbox (49.44226pt too wide) in paragraph at lines 17--19 []\T1/txtt/m/n/10 add_parameter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Updateable.Updateable Underfull \hbox (badness 10000) in paragraph at lines 19--21 []\T1/txtt/m/n/10 AddAgeDependentTransmission() Overfull \hbox (33.46252pt too wide) in paragraph at lines 19--21 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 21--23 []\T1/txtt/m/n/10 AddIndividualPropertyAndHINT() Overfull \hbox (33.46252pt too wide) in paragraph at lines 21--23 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/txtt/m/n/10 AgeStructureUNWPP() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 23--25 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/txtt/m/n/10 AgesYears \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Overfull \hbox (31.54231pt too wide) in paragraph at lines 28--30 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Contents Overfull \hbox (26.68231pt too wide) in paragraph at lines 30--32 []\T1/txtt/m/n/10 append() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializati on.dtkFileTools.DtkFile.Objects Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (8.10747pt too wide) in paragraph at lines 32--34 \T1/qtm/m/it/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 34--36 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_w5ml\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 application() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (73.8823pt too wide) in paragraph at lines 40--42 []\T1/txtt/m/n/10 apply_overlay() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 apply_to_defaults_or_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 42--44 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 arcsec_to_deg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 44--46 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Overfull \hbox (51.92223pt too wide) in paragraph at lines 46--48 []\T1/txtt/m/n/10 as_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (30.00221pt too wide) in paragraph at lines 48--50 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Channel Overfull \hbox (26.10222pt too wide) in paragraph at lines 50--52 []\T1/txtt/m/n/10 as_dictionary() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chan nelreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/txtt/m/n/10 author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 63--65 []\T1/txtt/m/n/10 BaseInputFile \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 63--65 \T1/qtm/m/it/10 emod_api.demographics.BaseInputFile\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 65--66 []\T1/txtt/m/n/10 basicNode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 67--69 []\T1/txtt/m/n/10 BroadcastEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 69--71 []\T1/txtt/m/n/10 BroadcastEventToOtherNodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 72--74 []\T1/txtt/m/n/10 byte_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 call_plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [79] Underfull \hbox (badness 10000) in paragraph at lines 79--81 []\T1/txtt/m/n/10 change_individual_property() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 83--85 []\T1/txtt/m/n/10 change_individual_property_scheduled() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 85--87 []\T1/txtt/m/n/10 change_individual_property_triggered() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/txtt/m/n/10 change_ser_pop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 87--89 \T1/qtm/m/it/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 ), Overfull \hbox (46.67224pt too wide) in paragraph at lines 90--92 []\T1/txtt/m/n/10 channel_names \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channe lreports.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 ChannelReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (20.42232pt too wide) in paragraph at lines 94--96 []\T1/txtt/m/n/10 channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrepo rts.channels.ChannelReport Overfull \hbox (9.38226pt too wide) in paragraph at lines 96--98 []\T1/txtt/m/n/10 chunk_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 98--100 []\T1/txtt/m/n/10 chunk_sizes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 chunks \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/txtt/m/n/10 collect() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 102--104 \T1/qtm/m/it/10 emod_api.channelreports.plot_icj_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 collect() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 104--106 \T1/qtm/m/it/10 emod_api.spatialreports.plot_spat_means\T1/qtm/m/n/10 ), Overfull \hbox (29.63231pt too wide) in paragraph at lines 106--108 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.EllZeeFour Overfull \hbox (13.76231pt too wide) in paragraph at lines 108--110 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Snappy Overfull \hbox (43.15228pt too wide) in paragraph at lines 110--112 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 compress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.13228pt too wide) in paragraph at lines 114--116 []\T1/txtt/m/n/10 compressed \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFile Overfull \hbox (9.38226pt too wide) in paragraph at lines 116--118 []\T1/txtt/m/n/10 compression \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializ ation.dtkFileTools.DtkFile Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 ConstantDistribution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.58746pt too wide) in paragraph at lines 118--120 \T1/qtm/m/it/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 construct() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 120--122 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 ConstructNodesFromDataFrame() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 122--124 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (92.52237pt too wide) in paragraph at lines 124--126 []\T1/txtt/m/n/10 copy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. PreDefinedDistributions.ConstantDistribution Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 creation_date \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weathe r.weather.Weather Overfull \hbox (58.51736pt too wide) in paragraph at lines 130--132 []\T1/txtt/m/n/10 CrudeRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.d emographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports. spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 141--142 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.weather .WeatherNode prop- Overfull \hbox (1.23224pt too wide) in paragraph at lines 142--144 []\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weat her.weather.Metadata Overfull \hbox (13.67229pt too wide) in paragraph at lines 148--150 []\T1/txtt/m/n/10 DatavalueCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 155--156 []\T1/txtt/m/n/10 decorate_actual_iv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 156--158 []\T1/txtt/m/n/10 decorate_actual_iv_impl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (14.49223pt too wide) in paragraph at lines 158--160 []\T1/txtt/m/n/10 default_population \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Node.Node Overfull \hbox (15.1475pt too wide) in paragraph at lines 160--162 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 162--164 []\T1/txtt/m/n/10 DelayedIntervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 164--166 []\T1/txtt/m/n/10 Demographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 164--166 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 166--168 []\T1/txtt/m/n/10 DemographicsGenerator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Overfull \hbox (16.85251pt too wide) in paragraph at lines 166--168 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/txtt/m/n/10 DemographicsOverlay \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 168--170 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/txtt/m/n/10 DemographicsType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (16.85251pt too wide) in paragraph at lines 170--172 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 172--174 []\T1/txtt/m/n/10 disable_warnings() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [80] Underfull \hbox (badness 10000) in paragraph at lines 174--176 []\T1/txtt/m/n/10 display() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 174--176 \T1/qtm/m/it/10 emod_api.channelreports.plot_icj_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 176--178 []\T1/txtt/m/n/10 do_mapping_from_events() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (4.56746pt too wide) in paragraph at lines 176--178 \T1/qtm/m/it/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 179--181 []\T1/txtt/m/n/10 dtk_to_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.17227pt too wide) in paragraph at lines 181--183 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 183--185 []\T1/txtt/m/n/10 dtk_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 186--188 []\T1/txtt/m/n/10 DtkFile.Contents \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 188--190 []\T1/txtt/m/n/10 DtkFile.Objects \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 190--192 []\T1/txtt/m/n/10 DtkFileV1 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 192--194 []\T1/txtt/m/n/10 DtkFileV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 194--196 []\T1/txtt/m/n/10 DtkFileV2.NodesV2 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 196--198 []\T1/txtt/m/n/10 DtkFileV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 198--200 []\T1/txtt/m/n/10 DtkFileV3.NodesV3 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (3.18729pt too wide) in paragraph at lines 200--202 []\T1/txtt/m/n/10 DtkFileV4 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 202--204 []\T1/txtt/m/n/10 DtkFileV5 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (3.18729pt too wide) in paragraph at lines 204--206 []\T1/txtt/m/n/10 DtkHeader \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Overfull \hbox (48.0174pt too wide) in paragraph at lines 206--208 []\T1/txtt/m/n/10 DtkRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.dem ographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 208--210 []\T1/txtt/m/n/10 duplicate_nodeID_check() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 208--210 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (19.2323pt too wide) in paragraph at lines 213--215 []\T1/txtt/m/n/10 EllZeeFour \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. serialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (27.37175pt too wide) in paragraph at lines 233--234 []\T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation Overfull \hbox (1.12183pt too wide) in paragraph at lines 235--236 []\T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents Overfull \hbox (32.62173pt too wide) in paragraph at lines 259--260 []\T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers Overfull \hbox (6.37181pt too wide) in paragraph at lines 267--268 []\T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions Overfull \hbox (6.37181pt too wide) in paragraph at lines 269--270 []\T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes [81] Underfull \hbox (badness 10000) in paragraph at lines 342--344 []\T1/txtt/m/n/10 EveryoneInitiallySusceptible() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 342--344 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 344--346 []\T1/txtt/m/n/10 examine_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 350--352 []\T1/txtt/m/n/10 FAMILY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 352--354 []\T1/txtt/m/n/10 FEMALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.mig ration.Migration Underfull \hbox (badness 10000) in paragraph at lines 354--356 []\T1/txtt/m/n/10 fill_nodes_legacy() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (46.2575pt too wide) in paragraph at lines 354--356 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (31.2124pt too wide) in paragraph at lines 358--360 []\T1/txtt/m/n/10 find() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.se rialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 360--362 []\T1/txtt/m/n/10 flattenConfig() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (76.32239pt too wide) in paragraph at lines 362--364 []\T1/txtt/m/n/10 flush() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 366--368 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 371--373 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 371--373 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 373--375 []\T1/txtt/m/n/10 from_demog_and_param_gravity() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (113.91234pt too wide) in paragraph at lines 377--379 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (180.06232pt too wide) in paragraph at lines 379--381 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (197.29231pt too wide) in paragraph at lines 381--383 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution [82] Overfull \hbox (203.09232pt too wide) in paragraph at lines 383--385 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (93.66234pt too wide) in paragraph at lines 385--387 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograp hics.PropertiesAndAttributes.NodeAttributes Underfull \hbox (badness 10000) in paragraph at lines 387--389 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather. weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 389--391 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 389--391 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 391--393 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 391--393 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 393--394 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 394--396 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 394--396 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 396--397 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 397--399 []\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 397--399 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 399--401 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 401--403 []\T1/txtt/m/n/10 FullRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 401--403 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (13.67229pt too wide) in paragraph at lines 406--408 []\T1/txtt/m/n/10 GenderDataType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migra tion.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 408--410 []\T1/txtt/m/n/10 generate_demographics() Overfull \hbox (115.38252pt too wide) in paragraph at lines 408--410 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (69.64224pt too wide) in paragraph at lines 410--412 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.BaseInputFile.BaseInputFile Overfull \hbox (73.8823pt too wide) in paragraph at lines 412--414 []\T1/txtt/m/n/10 generate_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demo graphics.Demographics.Demographics Overfull \hbox (85.3922pt too wide) in paragraph at lines 414--416 []\T1/txtt/m/n/10 generate_headers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.BaseInputFile.BaseInputFile Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/txtt/m/n/10 generate_metadata() Overfull \hbox (115.38252pt too wide) in paragraph at lines 416--418 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator.Dem ographicsGenerator Overfull \hbox (161.05228pt too wide) in paragraph at lines 418--420 []\T1/txtt/m/n/10 generate_nodes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 422--424 []\T1/txtt/m/n/10 get_bbox() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 422--424 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 424--426 []\T1/txtt/m/n/10 get_class_with_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 426--428 []\T1/txtt/m/n/10 get_colour_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (44.89249pt too wide) in paragraph at lines 428--430 \T1/qtm/m/it/10 ule emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 430--432 []\T1/txtt/m/n/10 get_default_config_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 430--432 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 432--434 []\T1/txtt/m/n/10 get_default_for_complex_type() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (93.54231pt too wide) in paragraph at lines 434--436 []\T1/txtt/m/n/10 get_dtk_rate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.DemographicsTemplates.CrudeRate Underfull \hbox (badness 10000) in paragraph at lines 437--439 []\T1/txtt/m/n/10 get_fert_dist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 437--439 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 439--441 []\T1/txtt/m/n/10 get_fert_dist_from_rates() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 439--441 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 441--443 []\T1/txtt/m/n/10 get_grid_cell_id() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 441--443 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 444--446 []\T1/txtt/m/n/10 get_next_individual_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 444--446 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 446--448 []\T1/txtt/m/n/10 get_next_infection_suid() Overfull \hbox (77.9025pt too wide) in paragraph at lines 446--448 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation.Ser ializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 448--450 []\T1/txtt/m/n/10 get_nickname_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.63237pt too wide) in paragraph at lines 450--452 []\T1/txtt/m/n/10 get_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 452--454 []\T1/txtt/m/n/10 get_node_ids_from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 452--454 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Overfull \hbox (34.67223pt too wide) in paragraph at lines 454--456 []\T1/txtt/m/n/10 get_node_offsets() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 456--458 []\T1/txtt/m/n/10 get_node_pops_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 456--458 \T1/qtm/m/it/10 emod_api.demographics.Demographics\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 458--460 []\T1/txtt/m/n/10 get_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 458--460 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 461--463 []\T1/txtt/m/n/10 get_report_channels() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule [83] Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 get_shape_from_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 469--471 []\T1/txtt/m/n/10 get_waning_from_parameters() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 471--473 []\T1/txtt/m/n/10 get_waning_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 473--475 []\T1/txtt/m/n/10 get_waning_from_points() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 475--477 []\T1/txtt/m/n/10 get_xpix_ypix() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (9.92235pt too wide) in paragraph at lines 482--484 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreport s.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 484--486 []\T1/txtt/m/n/10 header \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization .dtkFileTools.DtkFile Underfull \hbox (badness 5985) in paragraph at lines 493--495 []\T1/txtt/m/n/10 id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports.sp atial.SpatialNode prop- Underfull \hbox (badness 10000) in paragraph at lines 496--498 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 498--500 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Overfull \hbox (34.6714pt too wide) in paragraph at lines 500--502 []\T1/txtt/m/n/10 IDREF_GRUMP1DEGREE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 502--504 []\T1/txtt/m/n/10 IDREF_GRUMP2PT5ARCMIN Underfull \hbox (badness 10000) in paragraph at lines 502--504 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 504--506 []\T1/txtt/m/n/10 IDREF_GRUMP30ARCSEC Underfull \hbox (badness 10000) in paragraph at lines 504--506 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (3.1715pt too wide) in paragraph at lines 506--508 []\T1/txtt/m/n/10 IDREF_LEGACY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 510--512 []\T1/txtt/m/n/10 IndividualAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 510--512 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Overfull \hbox (14.13748pt too wide) in paragraph at lines 512--514 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 514--516 []\T1/txtt/m/n/10 IndividualAttributes.FertilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 514--516 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 516--518 []\T1/txtt/m/n/10 IndividualAttributes.MortalityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 516--518 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Overfull \hbox (16.87178pt too wide) in paragraph at lines 518--520 []\T1/txtt/m/n/10 IndividualAttributes.SusceptibilityDistribution Overfull \hbox (48.58748pt too wide) in paragraph at lines 518--520 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.demographics.PropertiesAndAtt ributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 520--522 []\T1/txtt/m/n/10 IndividualProperties \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 520--522 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 522--524 []\T1/txtt/m/n/10 IndividualProperty \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 522--524 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 524--526 []\T1/txtt/m/n/10 infer_natural_mortality() Overfull \hbox (33.46252pt too wide) in paragraph at lines 524--526 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 526--528 []\T1/txtt/m/n/10 init_resolution_from_file() Underfull \hbox (badness 10000) in paragraph at lines 526--528 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Node.Node class Underfull \hbox (badness 10000) in paragraph at lines 528--530 []\T1/txtt/m/n/10 InitAgeUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 528--530 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 530--532 []\T1/txtt/m/n/10 InitPrevUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 530--532 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 532--534 []\T1/txtt/m/n/10 InitRiskExponential() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 532--534 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 534--536 []\T1/txtt/m/n/10 InitRiskLogNormal() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (15.1475pt too wide) in paragraph at lines 534--536 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 536--538 []\T1/txtt/m/n/10 InitRiskUniform() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 536--538 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 538--540 []\T1/txtt/m/n/10 InitSusceptConstant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 538--540 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (29.42224pt too wide) in paragraph at lines 540--542 []\T1/txtt/m/n/10 InterpolationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.mi gration.migration.Migration Overfull \hbox (2.72234pt too wide) in paragraph at lines 542--544 []\T1/txtt/m/n/10 interval \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Overfull \hbox (3.1715pt too wide) in paragraph at lines 544--546 []\T1/txtt/m/n/10 INTERVENTION \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrati on.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 551--553 []\T1/txtt/m/n/10 lat_lon_from_nodeid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 554--556 []\T1/txtt/m/n/10 LINEAR_INTERPOLATION Underfull \hbox (badness 10000) in paragraph at lines 554--556 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 556--558 []\T1/txtt/m/n/10 list_channels_and_ips() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule [84] Underfull \hbox (badness 10000) in paragraph at lines 558--560 []\T1/txtt/m/n/10 load_default_config_as_rod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 558--560 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 560--562 []\T1/txtt/m/n/10 LOCAL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migr ation.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 563--565 []\T1/txtt/m/n/10 lon_lat_2_point() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 563--565 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Overfull \hbox (26.81233pt too wide) in paragraph at lines 568--570 []\T1/txtt/m/n/10 main() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.ch annelreports.plot_prop_report\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 571--573 []\T1/txtt/m/n/10 make_config_from_poi() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 571--573 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 573--575 []\T1/txtt/m/n/10 make_config_from_poi_and_config_dict() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 573--575 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 575--577 []\T1/txtt/m/n/10 make_config_from_poi_and_config_file() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (3.8775pt too wide) in paragraph at lines 575--577 \T1/qtm/m/it/10 mod-ule emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 577--579 []\T1/txtt/m/n/10 make_config_from_poi_and_schema() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 579--580 []\T1/txtt/m/n/10 MALE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration at- Underfull \hbox (badness 10000) in paragraph at lines 583--584 []\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Overfull \hbox (8.4223pt too wide) in paragraph at lines 585--587 []\T1/txtt/m/n/10 MigrationType \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migrat ion.migration.Migration Overfull \hbox (2.62189pt too wide) in paragraph at lines 593--594 []| \T1/txtt/m/n/10 emod_api.channelreports.plot_prop_report\T1/qtm/m/n/10 , Overfull \hbox (49.87175pt too wide) in paragraph at lines 597--598 []| \T1/txtt/m/n/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/ n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 598--599 []| \T1/txtt/m/n/10 emod_api.config.dtk_post_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 599--600 []| \T1/txtt/m/n/10 emod_api.config.dtk_pre_process_adhocevents\T1/qtm/m/n/10 , Overfull \hbox (2.62189pt too wide) in paragraph at lines 608--609 []| \T1/txtt/m/n/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 609--610 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 , Overfull \hbox (55.12173pt too wide) in paragraph at lines 610--611 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m /n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 611--612 []| \T1/txtt/m/n/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 612--613 []| \T1/txtt/m/n/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 , Overfull \hbox (28.87181pt too wide) in paragraph at lines 614--615 []| \T1/txtt/m/n/10 emod_api.demographics.PreDefinedDistributions\T1/qtm/m/n/10 , Overfull \hbox (28.87181pt too wide) in paragraph at lines 615--616 []| \T1/txtt/m/n/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 621--622 []| \T1/txtt/m/n/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 623--624 []| \T1/txtt/m/n/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 636--637 []| \T1/txtt/m/n/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 640--641 []| \T1/txtt/m/n/10 emod_api.serialization.CensusAndModPop\T1/qtm/m/n/10 , [85] Overfull \hbox (18.37184pt too wide) in paragraph at lines 644--645 []| \T1/txtt/m/n/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 646--647 []| \T1/txtt/m/n/10 emod_api.spatialreports.plot_spat_means\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 651--653 []\T1/txtt/m/n/10 MortalityRateByAge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Overfull \hbox (15.1475pt too wide) in paragraph at lines 651--653 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 653--655 []\T1/txtt/m/n/10 MortalityStructureNigeriaDHS() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 653--655 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 655--657 []\T1/txtt/m/n/10 MultiInterventionDistributor() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 660--662 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 660--662 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 662--664 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 662--664 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 664--666 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 666--668 []\T1/txtt/m/n/10 new_intervention() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 666--668 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 668--670 []\T1/txtt/m/n/10 new_intervention2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 668--670 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 670--672 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 670--672 \T1/qtm/m/it/10 emod_api.interventions.import_pressure\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 672--674 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 672--674 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 674--676 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 676--678 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 676--678 \T1/qtm/m/it/10 emod_api.interventions.simple_vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 678--680 []\T1/txtt/m/n/10 new_scheduled_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 678--680 \T1/qtm/m/it/10 emod_api.interventions.node_multiplier\T1/qtm/m/n/10 ), Overfull \hbox (47.63237pt too wide) in paragraph at lines 682--684 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Demographics.Demographics Overfull \hbox (13.2223pt too wide) in paragraph at lines 684--686 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 689--691 []\T1/txtt/m/n/10 node_ID_from_lat_long() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (46.2575pt too wide) in paragraph at lines 689--691 \T1/qtm/m/it/10 emod_api.demographics.DemographicsInputDataParsers\T1/qtm/m/n/1 0 ), Overfull \hbox (37.1324pt too wide) in paragraph at lines 691--693 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographic s.Demographics.Demographics Overfull \hbox (2.72234pt too wide) in paragraph at lines 693--695 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialrepo rts.spatial.SpatialReport Underfull \hbox (badness 6808) in paragraph at lines 695--696 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Metadata prop- Underfull \hbox (badness 10000) in paragraph at lines 696--697 []\T1/txtt/m/n/10 node_ids \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather.wea ther.Weather prop- Underfull \hbox (badness 10000) in paragraph at lines 697--699 []\T1/txtt/m/n/10 NodeAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (14.13748pt too wide) in paragraph at lines 697--699 \T1/qtm/m/it/10 emod_api.demographics.PropertiesAndAttributes\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 700--702 []\T1/txtt/m/n/10 NodeCount \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/txtt/m/n/10 nodeid_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (21.38245pt too wide) in paragraph at lines 706--708 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.D emographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 709--711 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. dtkFileTools.DtkFile Overfull \hbox (65.82242pt too wide) in paragraph at lines 711--713 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serialization. SerializedPopulation.SerializedPopulation Underfull \hbox (badness 10000) in paragraph at lines 713--715 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 717--719 []\T1/txtt/m/n/10 nodes_for_DTK() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 719--721 []\T1/txtt/m/n/10 NoInitialPrevalence() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 719--721 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (62.70738pt too wide) in paragraph at lines 721--723 []\T1/txtt/m/n/10 NoRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (3.48235pt too wide) in paragraph at lines 723--725 []\T1/txtt/m/n/10 NullPtr \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api.ser ialization.dtkFileSupport\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 725--727 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (10.35226pt too wide) in paragraph at lines 727--729 []\T1/txtt/m/n/10 num_channels \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 729--731 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport [86] Overfull \hbox (20.85223pt too wide) in paragraph at lines 731--733 []\T1/txtt/m/n/10 num_time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 736--738 []\T1/txtt/m/n/10 ONE_FOR_EACH_GENDER Underfull \hbox (badness 10000) in paragraph at lines 736--738 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Overfull \hbox (34.6714pt too wide) in paragraph at lines 743--745 []\T1/txtt/m/n/10 PIECEWISE_CONSTANT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.m igration.migration.Migration Overfull \hbox (21.05736pt too wide) in paragraph at lines 745--747 []\T1/txtt/m/n/10 plot() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.sp atialreports.plot_spat_means\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 747--749 []\T1/txtt/m/n/10 plot_from_sql() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 749--751 []\T1/txtt/m/n/10 plot_traces() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 751--752 []\T1/txtt/m/n/10 plotBunch() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 752--754 []\T1/txtt/m/n/10 plotCompareFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/txtt/m/n/10 plotOneFromDisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 756--758 []\T1/txtt/m/n/10 point_2_grid_cell_id_lookup() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 756--758 \T1/qtm/m/it/10 emod_api.demographics.grid_construction\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 759--761 []\T1/txtt/m/n/10 process_cmd_line() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 761--763 []\T1/txtt/m/n/10 property_report_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 763--765 []\T1/txtt/m/n/10 PropertyValueChanger() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Underfull \hbox (badness 10000) in paragraph at lines 771--773 []\T1/txtt/m/n/10 read_json_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/txtt/m/n/10 recurser() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 774--776 \T1/qtm/m/it/10 emod_api.schema.dtk_post_process_schema\T1/qtm/m/n/10 ), Overfull \hbox (36.17227pt too wide) in paragraph at lines 778--780 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.ChannelReport Overfull \hbox (5.10228pt too wide) in paragraph at lines 780--782 []\T1/txtt/m/n/10 report_type \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelr eports.channels.Header Overfull \hbox (51.92223pt too wide) in paragraph at lines 782--784 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.ChannelReport Overfull \hbox (20.85223pt too wide) in paragraph at lines 784--786 []\T1/txtt/m/n/10 report_version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.chann elreports.channels.Header Underfull \hbox (badness 10000) in paragraph at lines 786--788 []\T1/txtt/m/n/10 res_in_degrees \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 793--795 []\T1/txtt/m/n/10 SAME_FOR_BOTH_GENDERS Underfull \hbox (badness 10000) in paragraph at lines 793--795 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 796--798 []\T1/txtt/m/n/10 save_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 798--800 []\T1/txtt/m/n/10 ScheduledCampaignEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 800--802 []\T1/txtt/m/n/10 schema_to_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 800--802 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 802--804 []\T1/txtt/m/n/10 schema_to_config_subnode() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 802--804 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 804--806 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 806--808 []\T1/txtt/m/n/10 SchemaConfigBuilder \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 810--812 []\T1/txtt/m/n/10 seed_by_coverage() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (26.63243pt too wide) in paragraph at lines 812--814 []\T1/txtt/m/n/10 send() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 814--816 []\T1/txtt/m/n/10 SerializedPopulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 814--816 \T1/qtm/m/it/10 emod_api.serialization.SerializedPopulation\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 816--818 []\T1/txtt/m/n/10 SerialObject \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 818--820 []\T1/txtt/m/n/10 set_beautifiers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 820--822 []\T1/txtt/m/n/10 set_demog_distributions() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 820--822 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 822--824 []\T1/txtt/m/n/10 set_growing_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 822--824 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 824--826 []\T1/txtt/m/n/10 set_immune_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 824--826 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), [87] Overfull \hbox (161.05228pt too wide) in paragraph at lines 826--828 []\T1/txtt/m/n/10 set_resolution() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.dem ographics.DemographicsGenerator.DemographicsGenerator Underfull \hbox (badness 10000) in paragraph at lines 828--830 []\T1/txtt/m/n/10 set_risk_mod() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 828--830 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Overfull \hbox (6.99231pt too wide) in paragraph at lines 830--832 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_ to_class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 833--835 []\T1/txtt/m/n/10 set_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 833--835 \T1/qtm/m/it/10 emod_api.config.from_poi_and_binary\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 835--837 []\T1/txtt/m/n/10 set_static_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 835--837 \T1/qtm/m/it/10 emod_api.demographics.demographics_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 837--839 []\T1/txtt/m/n/10 SetAgeDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 837--839 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (68.63231pt too wide) in paragraph at lines 839--841 []\T1/txtt/m/n/10 SetBirthRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demog raphics.Demographics.Demographics Overfull \hbox (84.38226pt too wide) in paragraph at lines 841--843 []\T1/txtt/m/n/10 SetConstantRisk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.de mographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 843--845 []\T1/txtt/m/n/10 SetConstantSusceptibility() Overfull \hbox (33.46252pt too wide) in paragraph at lines 843--845 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 845--847 []\T1/txtt/m/n/10 SetDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 845--847 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 847--849 []\T1/txtt/m/n/10 SetDefaultIndividualAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 847--849 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 849--851 []\T1/txtt/m/n/10 SetDefaultIndividualProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 849--851 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 851--853 []\T1/txtt/m/n/10 SetDefaultNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 851--853 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 853--855 []\T1/txtt/m/n/10 SetDefaultProperties() Overfull \hbox (33.46252pt too wide) in paragraph at lines 853--855 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 855--857 []\T1/txtt/m/n/10 SetDefaultPropertiesFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 855--857 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (1.12183pt too wide) in paragraph at lines 857--859 []\T1/txtt/m/n/10 SetEquilibriumAgeDistFromBirthAndMortRates() Overfull \hbox (33.46252pt too wide) in paragraph at lines 857--859 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 859--861 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamics() Overfull \hbox (33.46252pt too wide) in paragraph at lines 859--861 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 861--863 []\T1/txtt/m/n/10 SetEquilibriumVitalDynamicsFromWorldBank() Overfull \hbox (33.46252pt too wide) in paragraph at lines 861--863 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 863--865 []\T1/txtt/m/n/10 SetFertilityOverTimeFromParams() Overfull \hbox (33.46252pt too wide) in paragraph at lines 863--865 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 865--867 []\T1/txtt/m/n/10 SetHeteroRiskExponDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 865--867 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 867--869 []\T1/txtt/m/n/10 SetHeteroRiskLognormalDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 867--869 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 869--871 []\T1/txtt/m/n/10 SetHeteroRiskUniformDist() Overfull \hbox (33.46252pt too wide) in paragraph at lines 869--871 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 871--873 []\T1/txtt/m/n/10 SetIndividualAttributesWithFertMort() Overfull \hbox (33.46252pt too wide) in paragraph at lines 871--873 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 873--875 []\T1/txtt/m/n/10 SetInitialAgeExponential() Overfull \hbox (33.46252pt too wide) in paragraph at lines 873--875 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 875--877 []\T1/txtt/m/n/10 SetInitialAgeLikeSubSaharanAfrica() Overfull \hbox (33.46252pt too wide) in paragraph at lines 875--877 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 877--879 []\T1/txtt/m/n/10 SetInitPrevFromUniformDraw() Overfull \hbox (33.46252pt too wide) in paragraph at lines 877--879 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 879--881 []\T1/txtt/m/n/10 SetMigrationPattern() Overfull \hbox (33.46252pt too wide) in paragraph at lines 879--881 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 881--883 []\T1/txtt/m/n/10 SetMinimalNodeAttributes() Overfull \hbox (33.46252pt too wide) in paragraph at lines 881--883 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 883--885 []\T1/txtt/m/n/10 SetMortalityDistribution() Overfull \hbox (33.46252pt too wide) in paragraph at lines 883--885 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 885--887 []\T1/txtt/m/n/10 SetMortalityOverTimeFromData() Overfull \hbox (33.46252pt too wide) in paragraph at lines 885--887 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (89.63225pt too wide) in paragraph at lines 887--889 []\T1/txtt/m/n/10 SetMortalityRate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.d emographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 889--891 []\T1/txtt/m/n/10 SetNodeDefaultFromTemplate() Overfull \hbox (33.46252pt too wide) in paragraph at lines 889--891 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 891--893 []\T1/txtt/m/n/10 SetOneWayMigration() Overfull \hbox (33.46252pt too wide) in paragraph at lines 891--893 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 893--895 []\T1/txtt/m/n/10 SetOverdispersion() Overfull \hbox (33.46252pt too wide) in paragraph at lines 893--895 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 895--897 []\T1/txtt/m/n/10 SetRoundTripMigration() Overfull \hbox (33.46252pt too wide) in paragraph at lines 895--897 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Underfull \hbox (badness 10000) in paragraph at lines 897--899 []\T1/txtt/m/n/10 SetSimpleVitalDynamics() Overfull \hbox (33.46252pt too wide) in paragraph at lines 897--899 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics.Demographics.Demographics Overfull \hbox (15.1475pt too wide) in paragraph at lines 899--901 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), [88] Overfull \hbox (14.49228pt too wide) in paragraph at lines 901--903 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV1 Overfull \hbox (14.49228pt too wide) in paragraph at lines 903--905 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV2 Overfull \hbox (14.49228pt too wide) in paragraph at lines 905--907 []\T1/txtt/m/n/10 simulation \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializa tion.dtkFileTools.DtkFileV3 Underfull \hbox (badness 10000) in paragraph at lines 909--911 []\T1/txtt/m/n/10 SpatialReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 911--913 []\T1/txtt/m/n/10 StandardDiagnostic() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 913--915 []\T1/txtt/m/n/10 start \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialreports .spatial.SpatialReport Overfull \hbox (30.92229pt too wide) in paragraph at lines 915--917 []\T1/txtt/m/n/10 start_time \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (85.98161pt too wide) in paragraph at lines 919--921 []\T1/txtt/m/n/10 STATIC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographics. DemographicsGenerator.DemographicsType Overfull \hbox (25.6723pt too wide) in paragraph at lines 921--923 []\T1/txtt/m/n/10 step_size \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrep orts.channels.ChannelReport Underfull \hbox (badness 10000) in paragraph at lines 925--927 []\T1/txtt/m/n/10 StepFunctionSusceptibility() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (15.1475pt too wide) in paragraph at lines 925--927 \T1/qtm/m/it/10 emod_api.demographics.DemographicsTemplates\T1/qtm/m/n/10 ), Overfull \hbox (30.92229pt too wide) in paragraph at lines 932--934 []\T1/txtt/m/n/10 time_stamp \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelre ports.channels.ChannelReport Overfull \hbox (13.2223pt too wide) in paragraph at lines 936--938 []\T1/txtt/m/n/10 time_steps \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatialre ports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 938--940 []\T1/txtt/m/n/10 title \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreports .channels.Channel Overfull \hbox (20.42232pt too wide) in paragraph at lines 940--942 []\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelrepo rts.channels.ChannelReport Overfull \hbox (42.38239pt too wide) in paragraph at lines 943--945 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.Demographics Overfull \hbox (74.09238pt too wide) in paragraph at lines 945--947 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 947--948 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Node.Node Overfull \hbox (108.27232pt too wide) in paragraph at lines 948--950 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PreDefinedDistributions.ConstantDistribution Overfull \hbox (103.41237pt too wide) in paragraph at lines 950--952 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes Overfull \hbox (169.56235pt too wide) in paragraph at lines 952--954 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.AgeDistribution Overfull \hbox (186.79234pt too wide) in paragraph at lines 954--956 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.FertilityDistribution Overfull \hbox (192.59235pt too wide) in paragraph at lines 956--958 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.MortalityDistribution Overfull \hbox (208.45236pt too wide) in paragraph at lines 958--960 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualAttributes.SusceptibilityDistribution Overfull \hbox (106.18236pt too wide) in paragraph at lines 960--962 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualProperties Overfull \hbox (99.51236pt too wide) in paragraph at lines 962--964 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.IndividualProperty Overfull \hbox (83.16237pt too wide) in paragraph at lines 964--966 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.PropertiesAndAttributes.NodeAttributes Overfull \hbox (17.94235pt too wide) in paragraph at lines 966--968 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Updateable.Updateable Overfull \hbox (74.09238pt too wide) in paragraph at lines 968--970 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographi cs.Demographics.DemographicsOverlay Underfull \hbox (badness 10000) in paragraph at lines 970--972 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration. migration.Migration Underfull \hbox (badness 10000) in paragraph at lines 972--974 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.schema_to_ class.ReadOnlyDict Underfull \hbox (badness 10000) in paragraph at lines 974--975 []\T1/txtt/m/n/10 to_tuple() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demograph ics.Node.Node Underfull \hbox (badness 10000) in paragraph at lines 975--976 []\T1/txtt/m/n/10 Tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.migration.migra tion.Migration prop- Underfull \hbox (badness 10000) in paragraph at lines 978--980 []\T1/txtt/m/n/10 triggered_campaign_delay_event() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (11.6218pt too wide) in paragraph at lines 980--982 []\T1/txtt/m/n/10 triggered_campaign_event_with_optional_delay() Underfull \hbox (badness 10000) in paragraph at lines 982--984 []\T1/txtt/m/n/10 TriggeredCampaignEvent() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (40.13228pt too wide) in paragraph at lines 987--989 []\T1/txtt/m/n/10 uncompress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.seriali zation.dtkFileSupport.EllZeeFour Overfull \hbox (24.26228pt too wide) in paragraph at lines 989--991 []\T1/txtt/m/n/10 uncompress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.seriali zation.dtkFileSupport.Snappy Overfull \hbox (53.65225pt too wide) in paragraph at lines 991--993 []\T1/txtt/m/n/10 uncompress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.seriali zation.dtkFileSupport.Uncompressed Underfull \hbox (badness 10000) in paragraph at lines 993--995 []\T1/txtt/m/n/10 uncompress() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 995--997 []\T1/txtt/m/n/10 Uncompressed \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 997--999 []\T1/txtt/m/n/10 units \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channelreports .channels.Channel Overfull \hbox (12.69237pt too wide) in paragraph at lines 999--1001 []\T1/txtt/m/n/10 update() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.demographic s.Updateable.Updateable Overfull \hbox (11.73221pt too wide) in paragraph at lines 1001--1003 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.we ather.weather.Metadata [89] Overfull \hbox (6.7322pt too wide) in paragraph at lines 1003--1005 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.we ather.weather.Weather Overfull \hbox (11.43234pt too wide) in paragraph at lines 1005--1006 []\T1/txtt/m/n/10 Updateable \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. demographics.Updateable\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1006--1008 []\T1/txtt/m/n/10 uses_old_waning() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 1011--1013 []\T1/txtt/m/n/10 validate_res_in_arcsec() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (16.85251pt too wide) in paragraph at lines 1011--1013 \T1/qtm/m/it/10 emod_api.demographics.DemographicsGenerator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1013--1015 []\T1/txtt/m/n/10 version \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.dtkFileTools.DtkFile Overfull \hbox (76.32239pt too wide) in paragraph at lines 1021--1023 []\T1/txtt/m/n/10 write() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.serializatio n.SerializedPopulation.SerializedPopulation Overfull \hbox (2.12732pt too wide) in paragraph at lines 1023--1024 []\T1/txtt/m/n/10 write() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emod_api.s erialization.dtkFileTools\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/txtt/m/n/10 write_config_from_default_and_params() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (62.11249pt too wide) in paragraph at lines 1024--1026 \T1/qtm/m/it/10 mod-ule emod_api.config.default_from_schema_no_validation\T1/qt m/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1026--1028 []\T1/txtt/m/n/10 write_default_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 1028--1030 []\T1/txtt/m/n/10 write_default_from_schema() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Overfull \hbox (31.00249pt too wide) in paragraph at lines 1028--1030 \T1/qtm/m/it/10 emod_api.config.default_from_schema_no_validation\T1/qtm/m/n/10 ), Overfull \hbox (41.42226pt too wide) in paragraph at lines 1030--1032 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.channel reports.channels.ChannelReport Overfull \hbox (23.72227pt too wide) in paragraph at lines 1032--1034 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.spatial reports.spatial.SpatialReport Underfull \hbox (badness 10000) in paragraph at lines 1034--1036 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Metadata Underfull \hbox (badness 10000) in paragraph at lines 1036--1037 []\T1/txtt/m/n/10 write_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emod_api.weather .weather.Weather Underfull \hbox (badness 10000) in paragraph at lines 1040--1042 []\T1/txtt/m/n/10 xpix_ypix_from_lat_lon() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (63.76735pt too wide) in paragraph at lines 1045--1047 []\T1/txtt/m/n/10 YearlyRate \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emod_api. demographics.DemographicsTemplates\T1/qtm/m/n/10 ), [90]) (./institute-for-disease-modeling-emod-api.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi5.pfb> Output written on institute-for-disease-modeling-emod-api.pdf (94 pages, 197859 1 bytes). Transcript written on institute-for-disease-modeling-emod-api.log. Latexmk: Index file 'institute-for-disease-modeling-emod-api.idx' was written Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emod-api.pdf' Latexmk: Errors, in force_mode: so I tried finishing targets Collected error summary (may duplicate other messages): pdflatex: Command for 'pdflatex' gave return code 256