Read the Docs build information
Build id: 1469288
Project: icb-scanpy
Version: 2482
Commit: da6ecb583895c175398df773a935a2ee8d81859c
Date: 2023-05-12T08:06:38.416550Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2023-05-12T08:06:40.784381Z, end-time: 2023-05-12T08:06:47.000448Z, duration: 6, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/scverse/scanpy.git .
Cloning into '.'...

[rtd-command-info] start-time: 2023-05-12T08:06:47.450749Z, end-time: 2023-05-12T08:06:48.063888Z, duration: 0, exit-code: 0
git fetch origin --force --tags --prune --prune-tags --depth 50 pull/2482/head:external-2482
From https://github.com/scverse/scanpy
 * [new ref]           refs/pull/2482/head -> external-2482

[rtd-command-info] start-time: 2023-05-12T08:06:48.313054Z, end-time: 2023-05-12T08:06:48.527783Z, duration: 0, exit-code: 0
git checkout --force da6ecb583895c175398df773a935a2ee8d81859c
Note: switching to 'da6ecb583895c175398df773a935a2ee8d81859c'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at da6ecb58 Merge branch 'master' into benchmark_support

[rtd-command-info] start-time: 2023-05-12T08:06:48.892239Z, end-time: 2023-05-12T08:06:48.972874Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-05-12T08:06:49.170558Z, end-time: 2023-05-12T08:06:49.665917Z, duration: 0, exit-code: 0
git submodule sync


[rtd-command-info] start-time: 2023-05-12T08:06:49.973465Z, end-time: 2023-05-12T08:07:00.653835Z, duration: 10, exit-code: 0
git submodule update --init --force docs/tutorials
Submodule 'docs/tutorials' (https://github.com/scverse/scanpy-tutorials.git) registered for path 'docs/tutorials'
Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/2482/docs/tutorials'...
Submodule path 'docs/tutorials': checked out '75c5ebb5b63769aee65f38842a34b7f7e1bbd476'

[rtd-command-info] start-time: 2023-05-12T08:07:06.293022Z, end-time: 2023-05-12T08:07:06.840301Z, duration: 0, exit-code: 0
asdf global python 3.9.15


[rtd-command-info] start-time: 2023-05-12T08:07:07.540385Z, end-time: 2023-05-12T08:07:08.757648Z, duration: 1, exit-code: 0
python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.9.15.final.0-64 in 646ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/2482, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==21.2.3, setuptools==57.4.0, wheel==0.37.0
  activators BashActivator,CShellActivator,FishActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2023-05-12T08:07:08.954619Z, end-time: 2023-05-12T08:07:23.972779Z, duration: 15, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/2482/lib/python3.9/site-packages (21.2.3)
Collecting pip
  Downloading pip-23.1.2-py3-none-any.whl (2.1 MB)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/2482/lib/python3.9/site-packages (57.4.0)
Collecting setuptools
  Downloading setuptools-67.7.2-py3-none-any.whl (1.1 MB)
Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 57.4.0
    Uninstalling setuptools-57.4.0:
      Successfully uninstalled setuptools-57.4.0
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-23.1.2 setuptools-67.7.2

[rtd-command-info] start-time: 2023-05-12T08:07:24.159481Z, end-time: 2023-05-12T08:07:35.636368Z, duration: 11, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0
Collecting pillow
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  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
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Building wheels for collected packages: mock
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23753 sha256=f5588b82815fbbe3b93c79767ba28e1c03b6aac9917c94935777afcd2ef72023
  Stored in directory: /tmp/pip-ephem-wheel-cache-pxr1rue6/wheels/44/dc/c7/e89296d3612588db0aa6545ee3305c23b7a48b3a9922916e1f
Successfully built mock
Installing collected packages: snowballstemmer, mock, commonmark, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed MarkupSafe-2.1.2 Pygments-2.15.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.5.7 charset-normalizer-3.1.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.1 pillow-9.5.0 readthedocs-sphinx-ext-2.2.0 recommonmark-0.5.0 requests-2.30.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.0.2