Read the Docs build information
Build id: 145809
Project: icb-anndata
Version: latest
Commit: e3e6c90027db19a231732b99a640976c8f1e810d
Date: 2018-09-28T15:08:49.692409Z
State: finished
Success: False


[rtd-command-info] start-time: 2018-09-28T20:08:50.221069Z, end-time: 2018-09-28T20:08:50.830407Z, duration: 0, exit-code: 0
git clone --recursive https://github.com/theislab/anndata.git .
Cloning into '.'...

[rtd-command-info] start-time: 2018-09-28T20:08:50.905167Z, end-time: 2018-09-28T20:08:50.914106Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: checking out 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at e3e6c90... Fixed build

[rtd-command-info] start-time: 2018-09-28T20:08:50.975062Z, end-time: 2018-09-28T20:08:50.985982Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2018-09-28T20:08:51.097213Z, end-time: 2018-09-28T20:08:51.105466Z, duration: 0, exit-code: 0
git branch -r
origin/2d
  origin/HEAD -> origin/master
  origin/backed
  origin/master

[rtd-command-info] start-time: 2018-09-28T20:08:51.802967Z, end-time: 2018-09-28T20:08:54.983810Z, duration: 3, exit-code: 0
python3.6 -mvirtualenv --no-site-packages --no-download 
Using base prefix '/home/docs/.pyenv/versions/3.6.2'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/latest/bin/python3.6
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/latest/bin/python
Installing setuptools, pip, wheel...done.

[rtd-command-info] start-time: 2018-09-28T20:08:55.139686Z, end-time: 2018-09-28T20:09:20.544693Z, duration: 25, exit-code: 0
python pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/.cache/pip Pygments==2.2.0 setuptools<40 docutils==0.13.1 mock==1.0.1 pillow==2.6.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.4.0 sphinx<1.8 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<0.6
Collecting Pygments==2.2.0
  Downloading https://files.pythonhosted.org/packages/02/ee/b6e02dc6529e82b75bb06823ff7d005b141037cb1416b10c6f00fc419dca/Pygments-2.2.0-py2.py3-none-any.whl (841kB)
Collecting setuptools<40
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Collecting docutils==0.13.1
  Downloading https://files.pythonhosted.org/packages/7c/30/8fb30d820c012a6f701a66618ce065b6d61d08ac0a77e47fc7808dbaee47/docutils-0.13.1-py3-none-any.whl (536kB)
Collecting mock==1.0.1
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Collecting alabaster!=0.7.5,<0.8,>=0.7
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Collecting commonmark==0.5.4
  Downloading https://files.pythonhosted.org/packages/4d/93/3808cbcebe94d205f55a9a32857df733a603339d32c46cd32669d808d964/CommonMark-0.5.4.tar.gz (120kB)
Collecting recommonmark==0.4.0
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Collecting sphinx<1.8
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Collecting packaging (from sphinx<1.8)
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Collecting Jinja2>=2.3 (from sphinx<1.8)
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Collecting sphinxcontrib-websupport (from sphinx<1.8)
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Collecting babel!=2.0,>=1.3 (from sphinx<1.8)
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Collecting six>=1.5 (from sphinx<1.8)
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Collecting requests>=2.0.0 (from sphinx<1.8)
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Collecting snowballstemmer>=1.1 (from sphinx<1.8)
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Collecting pyparsing>=2.0.2 (from packaging->sphinx<1.8)
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Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx<1.8)
  Downloading https://files.pythonhosted.org/packages/4d/de/32d741db316d8fdb7680822dd37001ef7a448255de9699ab4bfcbdf4172b/MarkupSafe-1.0.tar.gz
Collecting pytz>=0a (from babel!=2.0,>=1.3->sphinx<1.8)
  Downloading https://files.pythonhosted.org/packages/30/4e/27c34b62430286c6d59177a0842ed90dc789ce5d1ed740887653b898779a/pytz-2018.5-py2.py3-none-any.whl (510kB)
Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx<1.8)
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Collecting idna<2.8,>=2.5 (from requests>=2.0.0->sphinx<1.8)
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Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx<1.8)
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Collecting urllib3<1.24,>=1.21.1 (from requests>=2.0.0->sphinx<1.8)
  Downloading https://files.pythonhosted.org/packages/bd/c9/6fdd990019071a4a32a5e7cb78a1d92c53851ef4f56f62a3486e6a7d8ffb/urllib3-1.23-py2.py3-none-any.whl (133kB)
Building wheels for collected packages: mock, pillow, commonmark, MarkupSafe
  Running setup.py bdist_wheel for mock: started
  Running setup.py bdist_wheel for mock: finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/.cache/pip/wheels/7e/72/92/744b532c779242b57aab4bcba80c312b30c069bbd60025e7e6
  Running setup.py bdist_wheel for pillow: started
  Running setup.py bdist_wheel for pillow: finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/.cache/pip/wheels/de/0e/6b/556798d1ac8762a076ddff5b20f65b2e6cc2ae13b0e683c263
  Running setup.py bdist_wheel for commonmark: started
  Running setup.py bdist_wheel for commonmark: finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/.cache/pip/wheels/a0/f4/35/019d917f6875107ade3aad634c982f5c6b604c5631cddf20ac
  Running setup.py bdist_wheel for MarkupSafe: started
  Running setup.py bdist_wheel for MarkupSafe: finished with status 'done'
  Stored in directory: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/.cache/pip/wheels/33/56/20/ebe49a5c612fffe1c5a632146b16596f9e64676768661e4e46
Successfully built mock pillow commonmark MarkupSafe
Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, commonmark, recommonmark, six, pyparsing, packaging, imagesize, MarkupSafe, Jinja2, sphinxcontrib-websupport, pytz, babel, certifi, idna, chardet, urllib3, requests, snowballstemmer, sphinx, sphinx-rtd-theme, readthedocs-sphinx-ext
  Found existing installation: setuptools 39.0.1
    Uninstalling setuptools-39.0.1:
      Successfully uninstalled setuptools-39.0.1
Successfully installed Jinja2-2.10 MarkupSafe-1.0 Pygments-2.2.0 alabaster-0.7.11 babel-2.6.0 certifi-2018.8.24 chardet-3.0.4 commonmark-0.5.4 docutils-0.13.1 idna-2.7 imagesize-1.1.0 mock-1.0.1 packaging-18.0 pillow-2.6.1 pyparsing-2.2.1 pytz-2018.5 readthedocs-sphinx-ext-0.5.15 recommonmark-0.4.0 requests-2.19.1 setuptools-39.2.0 six-1.11.0 snowballstemmer-1.2.1 sphinx-1.7.9 sphinx-rtd-theme-0.4.1 sphinxcontrib-websupport-1.1.0 urllib3-1.23
You are using pip version 9.0.3, however version 18.0 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.

[rtd-command-info] start-time: 2018-09-28T20:09:20.604310Z, end-time: 2018-09-28T20:09:36.629800Z, duration: 16, exit-code: 0
python pip install --exists-action=w --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/.cache/pip -r /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/requirements.txt
Collecting pandas>=0.21.0 (from -r /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/e1/d8/feeb346d41f181e83fba45224ab14a8d8af019b48af742e047f3845d8cff/pandas-0.23.4-cp36-cp36m-manylinux1_x86_64.whl (8.9MB)
Collecting numpy~=1.14.0 (from -r /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/requirements.txt (line 2))
  Downloading https://files.pythonhosted.org/packages/e5/c4/395ebb218053ba44d64935b3729bc88241ec279915e72100c5979db10945/numpy-1.14.6-cp36-cp36m-manylinux1_x86_64.whl (13.8MB)
Collecting scipy~=1.0 (from -r /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/requirements.txt (line 3))
  Downloading https://files.pythonhosted.org/packages/a8/0b/f163da98d3a01b3e0ef1cab8dd2123c34aee2bafbb1c5bffa354cc8a1730/scipy-1.1.0-cp36-cp36m-manylinux1_x86_64.whl (31.2MB)
Collecting h5py (from -r /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/requirements.txt (line 4))
  Downloading https://files.pythonhosted.org/packages/8e/cb/726134109e7bd71d98d1fcc717ffe051767aac42ede0e7326fd1787e5d64/h5py-2.8.0-cp36-cp36m-manylinux1_x86_64.whl (2.8MB)
Collecting natsort (from -r /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/requirements.txt (line 5))
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Collecting python-dateutil>=2.5.0 (from pandas>=0.21.0->-r /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/requirements.txt (line 1))
  Downloading https://files.pythonhosted.org/packages/cf/f5/af2b09c957ace60dcfac112b669c45c8c97e32f94aa8b56da4c6d1682825/python_dateutil-2.7.3-py2.py3-none-any.whl (211kB)
Requirement already satisfied: pytz>=2011k in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/latest/lib/python3.6/site-packages (from pandas>=0.21.0->-r /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/requirements.txt (line 1))
Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/latest/lib/python3.6/site-packages (from h5py->-r /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/requirements.txt (line 4))
Installing collected packages: numpy, python-dateutil, pandas, scipy, h5py, natsort
Successfully installed h5py-2.8.0 natsort-5.4.1 numpy-1.14.6 pandas-0.23.4 python-dateutil-2.7.3 scipy-1.1.0
You are using pip version 9.0.3, however version 18.0 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.

[rtd-command-info] start-time: 2018-09-28T20:09:37.083137Z, end-time: 2018-09-28T20:09:37.159892Z, duration: 0, exit-code: 0
cat docs/conf.py
import os
import sys
import time
import inspect
from pathlib import Path, PurePosixPath
import logging

HERE = Path(__file__).parent
sys.path.insert(0, str(HERE / '..'))

import anndata


logger = logging.getLogger(__name__)

for generated in HERE.glob('anndata.*.rst'):
    generated.unlink()


# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.intersphinx',
    'sphinx.ext.doctest',
    'sphinx.ext.coverage',
    'sphinx.ext.mathjax',
    'sphinx.ext.napoleon',
    'sphinx.ext.autosummary',
    # 'plot_generator',
    # 'plot_directive',
    'sphinx_autodoc_typehints',  # needs to be after napoleon
    # 'ipython_directive',
    # 'ipython_console_highlighting',
]

# Generate the API documentation when building
autosummary_generate = True
autodoc_mock_imports = ['_tkinter']  # why this?
autodoc_member_order = 'bysource'
#autodoc_default_flags = ['members']
napoleon_use_param = True

intersphinx_mapping = dict(
    python=('https://docs.python.org/3', None),
    h5py=('http://docs.h5py.org/en/latest/', None)
)

templates_path = ['_templates']
source_suffix = '.rst'
master_doc = 'index'
project = 'anndata'
copyright = '{}, Alex Wolf, Philipp Angerer, Sergei Rybakov'.format(time.strftime("%Y"))
author = 'Alex Wolf, Philipp Angerer, Sergei Rybakov'

version = anndata.__version__.replace('.dirty', '')
release = version
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
pygments_style = 'sphinx'
todo_include_todos = False

# -- Options for HTML output ----------------------------------------------

html_theme = 'sphinx_rtd_theme'
html_theme_options = {
    'navigation_depth': 2,
}
html_context = {
    'display_github': True,      # Integrate GitHub
    'github_user': 'theislab',   # Username
    'github_repo': 'anndata',    # Repo name
    'github_version': 'master',  # Version
    'conf_py_path': '/docs/',    # Path in the checkout to the docs root
    'css_files': [               # Additional CSS
        '_static/css/override.css',
    ],
}
if 'READTHEDOCS' in os.environ:
    # For some reason, RTD doesn’t insert their stuff anymore once we add custom CSS files.
    html_context['css_files'].insert(0, 'https://media.readthedocs.org/css/sphinx_rtd_theme.css')

html_static_path = ['_static']

# -- Options for HTMLHelp output ------------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = 'anndatadoc'


# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'anndata.tex', 'anndata Documentation',
     'Alex Wolf, Philipp Angerer', 'manual'),
]


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'anndata', 'anndata Documentation',
     [author], 1)
]


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'anndata', 'anndata Documentation',
     author, 'anndata', 'One line description of project.',
     'Miscellaneous'),
]


# -- GitHub links ---------------------------------------------------------


def get_obj_module(qualname):
    """Get a module/class/attribute and its original module by qualname"""
    modname = qualname
    classname = None
    attrname = None
    while modname not in sys.modules:
        attrname = classname
        modname, classname = modname.rsplit('.', 1)

    # retrieve object and find original module name
    if classname:
        cls = getattr(sys.modules[modname], classname)
        modname = cls.__module__
        obj = getattr(cls, attrname) if attrname else cls
    else:
        obj = None

    return obj, sys.modules[modname]


def get_linenos(obj):
    """Get an object’s line numbers"""
    try:
        lines, start = inspect.getsourcelines(obj)
    except TypeError:
        return None, None
    else:
        return start, start + len(lines) - 1


project_dir = Path(__file__).parent.parent  # project/docs/conf.py/../.. → project/
github_url1 = 'https://github.com/{github_user}/{github_repo}/tree/{github_version}'.format_map(html_context)
github_url2 = 'https://github.com/theislab/anndata/tree/master'


def modurl(qualname):
    """Get the full GitHub URL for some object’s qualname."""
    obj, module = get_obj_module(qualname)
    github_url = github_url1
    try:
        path = PurePosixPath(Path(module.__file__).resolve().relative_to(project_dir))
    except ValueError:
        # trying to document something from another package
        github_url = github_url2
        path = '/'.join(module.__file__.split('/')[-2:])
    start, end = get_linenos(obj)
    fragment = '#L{}-L{}'.format(start, end) if start and end else ''
    return '{}/{}{}'.format(github_url, path, fragment)


# html_context doesn’t apply to autosummary templates ☹
# and there’s no way to insert filters into those templates
# so we have to modify the default filters
from jinja2.defaults import DEFAULT_FILTERS

DEFAULT_FILTERS['modurl'] = modurl


# -- Prettier Param docs --------------------------------------------


from typing import Dict, List, Tuple

from docutils import nodes
from sphinx import addnodes
from sphinx.domains.python import PyTypedField, PyObject
from sphinx.environment import BuildEnvironment


class PrettyTypedField(PyTypedField):
    list_type = nodes.definition_list
    
    def make_field(
        self,
        types: Dict[str, List[nodes.Node]],
        domain: str,
        items: Tuple[str, List[nodes.inline]],
        env: BuildEnvironment = None
    ) -> nodes.field:
        def makerefs(rolename, name, node):
            return self.make_xrefs(rolename, domain, name, node, env=env)
        
        def handle_item(fieldarg: str, content: List[nodes.inline]) -> nodes.definition_list_item:
            head = nodes.term()
            head += makerefs(self.rolename, fieldarg, addnodes.literal_strong)
            fieldtype = types.pop(fieldarg, None)
            if fieldtype is not None:
                head += nodes.Text(' : ')
                if len(fieldtype) == 1 and isinstance(fieldtype[0], nodes.Text):
                    typename = ''.join(n.astext() for n in fieldtype)
                    head += makerefs(self.typerolename, typename, addnodes.literal_emphasis)
                else:
                    head += fieldtype

            body_content = nodes.paragraph('', '', *content)
            body = nodes.definition('', body_content)

            return nodes.definition_list_item('', head, body)

        fieldname = nodes.field_name('', self.label)
        if len(items) == 1 and self.can_collapse:
            fieldarg, content = items[0]
            bodynode = handle_item(fieldarg, content)
        else:
            bodynode = self.list_type()
            for fieldarg, content in items:
                bodynode += handle_item(fieldarg, content)
        fieldbody = nodes.field_body('', bodynode)
        return nodes.field('', fieldname, fieldbody)


# replace matching field types with ours
PyObject.doc_field_types = [
    PrettyTypedField(
        ft.name,
        names=ft.names,
        typenames=ft.typenames,
        label=ft.label,
        rolename=ft.rolename,
        typerolename=ft.typerolename,
        can_collapse=ft.can_collapse,
    ) if isinstance(ft, PyTypedField) else ft
    for ft in PyObject.doc_field_types
]





###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    else:
        SUFFIX = source_suffix[0]
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')
html_static_path.append('/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = False
if 'html_theme' in globals():
    if html_theme in ['default']:
        # Allow people to bail with a hack of having an html_style
        if not 'html_style' in globals():
            import sphinx_rtd_theme
            html_theme = 'sphinx_rtd_theme'
            html_style = None
            html_theme_options = {}
            if 'html_theme_path' in globals():
                html_theme_path.append(sphinx_rtd_theme.get_html_theme_path())
            else:
                html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

            using_rtd_theme = True
else:
    import sphinx_rtd_theme
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(sphinx_rtd_theme.get_html_theme_path())
    else:
        html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
    using_rtd_theme = True

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://media.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://media.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
    ],
    'slug': 'icb-anndata',
    'name': u'anndata',
    'rtd_language': u'en',
    'programming_language': u'py',
    'canonical_url': 'https://icb-anndata.readthedocs-hosted.com/en/latest/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/docs/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'theislab',
    'github_repo': 'anndata',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': 'e3e6c900',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

[rtd-command-info] start-time: 2018-09-28T20:09:37.232929Z, end-time: 2018-09-28T20:09:38.495111Z, duration: 1, exit-code: 2
python sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.7.9
loading translations [en]... done

Traceback (most recent call last):
  File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/latest/lib/python3.6/site-packages/sphinx/registry.py", line 315, in load_extension
    mod = __import__(extname, None, None, ['setup'])
ModuleNotFoundError: No module named 'sphinx_autodoc_typehints'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/latest/lib/python3.6/site-packages/sphinx/cmdline.py", line 303, in main
    args.warningiserror, args.tags, args.verbosity, args.jobs)
  File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/latest/lib/python3.6/site-packages/sphinx/application.py", line 191, in __init__
    self.setup_extension(extension)
  File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/latest/lib/python3.6/site-packages/sphinx/application.py", line 411, in setup_extension
    self.registry.load_extension(self, extname)
  File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/latest/lib/python3.6/site-packages/sphinx/registry.py", line 318, in load_extension
    raise ExtensionError(__('Could not import extension %s') % extname, err)
sphinx.errors.ExtensionError: Could not import extension sphinx_autodoc_typehints (exception: No module named 'sphinx_autodoc_typehints')

Extension error:
Could not import extension sphinx_autodoc_typehints (exception: No module named 'sphinx_autodoc_typehints')