Read the Docs build information
Build id: 1422601
Project: icb-anndata
Version: 947
Commit: b1a0f94d87ce10b082bbddb3f9e74f098dc0b821
Date: 2023-04-19T13:58:15.955436Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2023-04-19T13:58:18.204573Z, end-time: 2023-04-19T13:58:19.223724Z, duration: 1, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/scverse/anndata.git .
Cloning into '.'...

[rtd-command-info] start-time: 2023-04-19T13:58:19.499729Z, end-time: 2023-04-19T13:58:21.120007Z, duration: 1, exit-code: 0
git fetch origin --force --tags --prune --prune-tags --depth 50 pull/947/head:external-947
From https://github.com/scverse/anndata
 * [new ref]         refs/pull/947/head -> external-947

[rtd-command-info] start-time: 2023-04-19T13:58:21.308351Z, end-time: 2023-04-19T13:58:21.414512Z, duration: 0, exit-code: 0
git checkout --force b1a0f94d87ce10b082bbddb3f9e74f098dc0b821
Note: switching to 'b1a0f94d87ce10b082bbddb3f9e74f098dc0b821'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at b1a0f94 (chore): tests

[rtd-command-info] start-time: 2023-04-19T13:58:21.599784Z, end-time: 2023-04-19T13:58:21.657276Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-04-19T13:58:21.847233Z, end-time: 2023-04-19T13:58:21.928816Z, duration: 0, exit-code: 0
git submodule sync


[rtd-command-info] start-time: 2023-04-19T13:58:22.138122Z, end-time: 2023-04-19T13:58:22.753316Z, duration: 0, exit-code: 0
git submodule update --init --force --recursive docs/tutorials/notebooks
Submodule 'docs/tutorials/notebooks' (https://github.com/scverse/anndata-tutorials) registered for path 'docs/tutorials/notebooks'
Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/947/docs/tutorials/notebooks'...
Submodule path 'docs/tutorials/notebooks': checked out '9e186c5c694793bb04ea1397721d154d6e0b7069'

[rtd-command-info] start-time: 2023-04-19T13:58:28.142867Z, end-time: 2023-04-19T13:58:28.226272Z, duration: 0, exit-code: 0
asdf global python 3.10.8


[rtd-command-info] start-time: 2023-04-19T13:58:28.757251Z, end-time: 2023-04-19T13:58:29.729860Z, duration: 0, exit-code: 0
python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.10.8.final.0-64 in 675ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/947, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==21.2.3, setuptools==57.4.0, wheel==0.37.0
  activators BashActivator,CShellActivator,FishActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2023-04-19T13:58:29.907480Z, end-time: 2023-04-19T13:58:40.440756Z, duration: 10, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/947/lib/python3.10/site-packages (21.2.3)
Collecting pip
  Downloading pip-23.1-py3-none-any.whl (2.1 MB)
Requirement already satisfied: setuptools<58.3.0 in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/947/lib/python3.10/site-packages (57.4.0)
Collecting setuptools<58.3.0
  Downloading setuptools-58.2.0-py3-none-any.whl (946 kB)
Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 57.4.0
    Uninstalling setuptools-57.4.0:
      Successfully uninstalled setuptools-57.4.0
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-23.1 setuptools-58.2.0

[rtd-command-info] start-time: 2023-04-19T13:58:40.665923Z, end-time: 2023-04-19T13:58:47.331475Z, duration: 6, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0
Collecting pillow
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  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
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Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/947/lib/python3.10/site-packages (from sphinx<2) (58.2.0)
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Building wheels for collected packages: mock
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=efb5783428f3dac85fb34067854119086079cd235bffce4d51e436d4925dc686
  Stored in directory: /tmp/pip-ephem-wheel-cache-2mtv2pts/wheels/df/9a/50/99d488b71fc0b027f0d316f4e447cdc9b973c67e1e7e4abc4b
Successfully built mock
Installing collected packages: snowballstemmer, mock, commonmark, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed MarkupSafe-2.1.2 Pygments-2.15.1 alabaster-0.7.13 babel-2.12.1 certifi-2022.12.7 charset-normalizer-3.1.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.1 pillow-9.5.0 readthedocs-sphinx-ext-2.2.0 recommonmark-0.5.0 requests-2.28.2 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.15