Read the Docs build information Build id: 1387730 Project: institute-for-disease-modeling-emodpy-malaria Version: latest Commit: cc037835c368b08bdd7adfc4fea7b0bd4c4760a9 Date: 2023-03-31T21:45:50.561356Z State: finished Success: True [rtd-command-info] start-time: 2023-03-31T21:45:52.321263Z, end-time: 2023-03-31T21:45:57.299712Z, duration: 4, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/emodpy-malaria.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.112' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2023-03-31T21:45:57.527866Z, end-time: 2023-03-31T21:45:57.951581Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at cc03783 Merge pull request #566 from stitova-idm/gh_565_add_Include_Identity_By_XXX_to_ReportNodeDemographicsMalariaGenetics [rtd-command-info] start-time: 2023-03-31T21:45:58.280457Z, end-time: 2023-03-31T21:45:58.345102Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-03-31T21:45:59.575145Z, end-time: 2023-03-31T21:46:04.477755Z, duration: 4, exit-code: 0 python3.8 -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH Using base prefix '/home/docs/.pyenv/versions/3.8.6' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python3.8 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2023-03-31T21:46:04.668046Z, end-time: 2023-03-31T21:46:06.517202Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (23.0.1) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 27.0 MB/s eta 0:00:00 Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 67.6.1 Uninstalling setuptools-67.6.1: Successfully uninstalled setuptools-67.6.1 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2023-03-31T21:46:06.699950Z, end-time: 2023-03-31T21:46:13.838198Z, duration: 7, exit-code: 0 python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0 Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting pillow Downloading Pillow-9.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.3/3.3 MB 74.1 MB/s eta 0:00:00 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 277.2 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl (13 kB) Collecting commonmark==0.9.1 Downloading commonmark-0.9.1-py2.py3-none-any.whl (51 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 51.1/51.1 kB 196.8 MB/s eta 0:00:00 Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 246.2 MB/s eta 0:00:00 Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.4/6.4 MB 238.0 MB/s eta 0:00:00 Collecting readthedocs-sphinx-ext<2.3 Downloading readthedocs_sphinx_ext-2.2.0-py2.py3-none-any.whl (11 kB) Collecting jinja2<3.1.0 Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.6/133.6 kB 242.0 MB/s eta 0:00:00 Collecting docutils>=0.11 Downloading docutils-0.19-py3-none-any.whl (570 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 570.5/570.5 kB 251.7 MB/s eta 0:00:00 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 575.5/575.5 kB 276.7 MB/s eta 0:00:00 Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.12.1-py3-none-any.whl (10.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.1/10.1 MB 226.6 MB/s eta 0:00:00 Collecting imagesize Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting packaging Downloading packaging-23.0-py3-none-any.whl (42 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.7/42.7 kB 197.3 MB/s eta 0:00:00 Collecting Pygments>=2.0 Downloading Pygments-2.14.0-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 292.1 MB/s eta 0:00:00 Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 241.2 MB/s eta 0:00:00 Collecting requests>=2.0.0 Downloading requests-2.28.2-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.8/62.8 kB 192.0 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx<2) (58.2.0) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting pytz>=2015.7 Downloading pytz-2023.3-py2.py3-none-any.whl (502 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 502.3/502.3 kB 273.8 MB/s eta 0:00:00 Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.15-py2.py3-none-any.whl (140 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 140.9/140.9 kB 257.0 MB/s eta 0:00:00 Collecting charset-normalizer<4,>=2 Downloading charset_normalizer-3.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (195 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 195.9/195.9 kB 262.9 MB/s eta 0:00:00 Collecting idna<4,>=2.5 Downloading idna-3.4-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 211.3 MB/s eta 0:00:00 Collecting certifi>=2017.4.17 Downloading certifi-2022.12.7-py3-none-any.whl (155 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 155.3/155.3 kB 251.7 MB/s eta 0:00:00 Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.0/94.0 kB 244.2 MB/s eta 0:00:00 Building wheels for collected packages: mock Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=92f98387cce27193ddc32985094a6a98be6d06c6c44f8fbdbc78311f46aca17d Stored in directory: /tmp/pip-ephem-wheel-cache-biocjopg/wheels/41/7c/21/90057f91c6ead7c77a90c52d6e85ca48bf82d8b0d3f8dfbb65 Successfully built mock Installing collected packages: snowballstemmer, pytz, mock, commonmark, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark Successfully installed MarkupSafe-2.1.2 Pygments-2.14.0 alabaster-0.7.13 babel-2.12.1 certifi-2022.12.7 charset-normalizer-3.1.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.0 pillow-9.4.0 pytz-2023.3 readthedocs-sphinx-ext-2.2.0 recommonmark-0.5.0 requests-2.28.2 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.15 [rtd-command-info] start-time: 2023-03-31T21:46:14.015873Z, end-time: 2023-03-31T21:46:44.029662Z, duration: 30, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting emodpy~=1.16 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emodpy/1.21.0/emodpy-1.21.0-py3-none-any.whl (122 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 122.3/122.3 kB 3.9 MB/s eta 0:00:00 Collecting emod-api~=1.28 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emod-api/1.28.5/emod_api-1.28.5-py3-none-any.whl (160 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 160.7/160.7 kB 8.1 MB/s eta 0:00:00 Collecting emod-malaria>=0.0.42 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/emod-malaria/0.0.42/emod_malaria-0.0.42-py3-none-any.whl (3.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.6/3.6 MB 11.1 MB/s eta 0:00:00 Collecting idmtools-models~=1.7 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools-models/1.7.6/idmtools_models-1.7.6-py3-none-any.whl (24 kB) Collecting matplotlib Downloading matplotlib-3.7.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (9.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.2/9.2 MB 112.9 MB/s eta 0:00:00 Collecting bs4 Downloading bs4-0.0.1.tar.gz (1.1 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting astor Downloading astor-0.8.1-py2.py3-none-any.whl (27 kB) Collecting pyCOMPS~=2.6 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/pyCOMPS/2.10.0/pyCOMPS-2.10.0-py2.py3-none-any.whl (74 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 74.5/74.5 kB 192.6 MB/s eta 0:00:00 Collecting astunparse Downloading astunparse-1.6.3-py2.py3-none-any.whl (12 kB) Collecting idmtools~=1.7 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools/1.7.6/idmtools-1.7.6-py3-none-any.whl (168 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 168.4/168.4 kB 15.2 MB/s eta 0:00:00 Collecting keyring Downloading keyring-23.13.1-py3-none-any.whl (37 kB) Collecting idmtools-platform-comps~=1.7 Downloading https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/idmtools-platform-comps/1.7.6/idmtools_platform_comps-1.7.6-py3-none-any.whl (185 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 185.1/185.1 kB 16.7 MB/s eta 0:00:00 Collecting click~=7.1 Downloading click-7.1.2-py2.py3-none-any.whl (82 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 82.8/82.8 kB 236.6 MB/s eta 0:00:00 Collecting pyproj Downloading pyproj-3.5.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.8/7.8 MB 188.5 MB/s eta 0:00:00 Collecting numpy!=1.19.4 Downloading numpy-1.24.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.3/17.3 MB 206.4 MB/s eta 0:00:00 Collecting shapely Downloading shapely-2.0.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.3/2.3 MB 255.2 MB/s eta 0:00:00 Collecting scikit-learn Downloading scikit_learn-1.2.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.8/9.8 MB 207.3 MB/s eta 0:00:00 Collecting prodict Downloading prodict-0.8.18.tar.gz (4.2 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pyyaml Downloading PyYAML-6.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (701 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 701.2/701.2 kB 283.8 MB/s eta 0:00:00 Collecting pandas Downloading pandas-1.5.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.2/12.2 MB 167.0 MB/s eta 0:00:00 Collecting lz4 Downloading lz4-4.3.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 270.1 MB/s eta 0:00:00 Collecting graphviz Downloading graphviz-0.20.1-py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.0/47.0 kB 201.4 MB/s eta 0:00:00 Collecting scipy Downloading scipy-1.10.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (34.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 34.5/34.5 MB 214.2 MB/s eta 0:00:00 Collecting parse Downloading parse-1.19.0.tar.gz (30 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting geographiclib Downloading geographiclib-2.0-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.3/40.3 kB 180.1 MB/s eta 0:00:00 Collecting coloredlogs~=15.0 Downloading coloredlogs-15.0.1-py2.py3-none-any.whl (46 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 46.0/46.0 kB 189.4 MB/s eta 0:00:00 Collecting pipreqs<0.5,>=0.4.10 Downloading pipreqs-0.4.11-py2.py3-none-any.whl (32 kB) Collecting tabulate<0.10,>=0.8.9 Downloading tabulate-0.9.0-py3-none-any.whl (35 kB) Collecting diskcache~=5.4.0 Downloading diskcache-5.4.0-py3-none-any.whl (44 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.0/45.0 kB 210.1 MB/s eta 0:00:00 Collecting more-itertools~=9.0.0 Downloading more_itertools-9.0.0-py3-none-any.whl (52 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 52.8/52.8 kB 184.0 MB/s eta 0:00:00 Collecting pygit2<=1.10.1,>=1.4.0 Downloading pygit2-1.10.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 101.4 MB/s eta 0:00:00 Collecting packaging<22.0,>=20.4 Downloading packaging-21.3-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.8/40.8 kB 166.2 MB/s eta 0:00:00 Collecting filelock Downloading filelock-3.10.7-py3-none-any.whl (10 kB) Collecting tqdm<5,>=4.52.0 Downloading tqdm-4.65.0-py3-none-any.whl (77 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.1/77.1 kB 230.3 MB/s eta 0:00:00 Collecting backoff<2.3,>=1.10.0 Downloading backoff-2.2.1-py3-none-any.whl (15 kB) Collecting pluggy~=1.0.0 Downloading pluggy-1.0.0-py2.py3-none-any.whl (13 kB) Collecting jinja2~=3.1.2 Downloading Jinja2-3.1.2-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.1/133.1 kB 257.0 MB/s eta 0:00:00 Collecting natsort~=8.2.0 Downloading natsort-8.2.0-py3-none-any.whl (37 kB) Requirement already satisfied: pytz>=2020.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from pandas->emod-api~=1.28->-r requirements.txt (line 2)) (2023.3) Collecting python-dateutil>=2.8.1 Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 247.7/247.7 kB 263.8 MB/s eta 0:00:00 Collecting future>=0.16.0 Downloading future-0.18.3.tar.gz (840 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 840.9/840.9 kB 287.4 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting xdg>=4.0.1 Downloading xdg-6.0.0-py3-none-any.whl (3.9 kB) Requirement already satisfied: requests>=2.11.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from pyCOMPS~=2.6->emodpy~=1.16->-r requirements.txt (line 1)) (2.28.2) Requirement already satisfied: wheel<1.0,>=0.23.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from astunparse->emodpy~=1.16->-r requirements.txt (line 1)) (0.40.0) Requirement already satisfied: six<2.0,>=1.6.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from astunparse->emodpy~=1.16->-r requirements.txt (line 1)) (1.16.0) Collecting beautifulsoup4 Downloading beautifulsoup4-4.12.0-py3-none-any.whl (132 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 132.2/132.2 kB 253.5 MB/s eta 0:00:00 Collecting importlib-resources Downloading importlib_resources-5.12.0-py3-none-any.whl (36 kB) Collecting jeepney>=0.4.2 Downloading jeepney-0.8.0-py3-none-any.whl (48 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 48.4/48.4 kB 175.2 MB/s eta 0:00:00 Collecting jaraco.classes Downloading jaraco.classes-3.2.3-py3-none-any.whl (6.0 kB) Collecting importlib-metadata>=4.11.4 Downloading importlib_metadata-6.1.0-py3-none-any.whl (21 kB) Collecting SecretStorage>=3.2 Downloading SecretStorage-3.3.3-py3-none-any.whl (15 kB) Collecting cycler>=0.10 Downloading cycler-0.11.0-py3-none-any.whl (6.4 kB) Collecting fonttools>=4.22.0 Downloading fonttools-4.39.3-py3-none-any.whl (1.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.0/1.0 MB 277.2 MB/s eta 0:00:00 Requirement already satisfied: pillow>=6.2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from matplotlib->emodpy~=1.16->-r requirements.txt (line 1)) (9.4.0) Collecting contourpy>=1.0.1 Downloading contourpy-1.0.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (300 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 300.0/300.0 kB 276.9 MB/s eta 0:00:00 Collecting kiwisolver>=1.0.1 Downloading kiwisolver-1.4.4-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 283.7 MB/s eta 0:00:00 Collecting pyparsing>=2.3.1 Downloading pyparsing-3.0.9-py3-none-any.whl (98 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 98.3/98.3 kB 239.2 MB/s eta 0:00:00 Requirement already satisfied: certifi in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from pyproj->emod-api~=1.28->-r requirements.txt (line 2)) (2022.12.7) Collecting threadpoolctl>=2.0.0 Downloading threadpoolctl-3.1.0-py3-none-any.whl (14 kB) Collecting joblib>=1.1.1 Downloading joblib-1.2.0-py3-none-any.whl (297 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 298.0/298.0 kB 277.6 MB/s eta 0:00:00 Collecting humanfriendly>=9.1 Downloading humanfriendly-10.0-py2.py3-none-any.whl (86 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 86.8/86.8 kB 208.1 MB/s eta 0:00:00 Collecting zipp>=0.5 Downloading zipp-3.15.0-py3-none-any.whl (6.8 kB) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from jinja2~=3.1.2->idmtools~=1.7->emodpy~=1.16->-r requirements.txt (line 1)) (2.1.2) Collecting docopt Downloading docopt-0.6.2.tar.gz (25 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting yarg Downloading yarg-0.1.9-py2.py3-none-any.whl (19 kB) Collecting cffi>=1.9.1 Downloading cffi-1.15.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (442 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 442.7/442.7 kB 278.8 MB/s eta 0:00:00 Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests>=2.11.1->pyCOMPS~=2.6->emodpy~=1.16->-r requirements.txt (line 1)) (1.26.15) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests>=2.11.1->pyCOMPS~=2.6->emodpy~=1.16->-r requirements.txt (line 1)) (3.1.0) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests>=2.11.1->pyCOMPS~=2.6->emodpy~=1.16->-r requirements.txt (line 1)) (3.4) Collecting cryptography>=2.0 Downloading cryptography-40.0.1-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.7/3.7 MB 227.4 MB/s eta 0:00:00 Collecting soupsieve>1.2 Downloading soupsieve-2.4-py3-none-any.whl (37 kB) Collecting pycparser Downloading pycparser-2.21-py2.py3-none-any.whl (118 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 118.7/118.7 kB 255.3 MB/s eta 0:00:00 Building wheels for collected packages: bs4, parse, prodict, future, docopt Building wheel for bs4 (setup.py): started Building wheel for bs4 (setup.py): finished with status 'done' Created wheel for bs4: filename=bs4-0.0.1-py3-none-any.whl size=1272 sha256=10b5d9a6586a1eab667b3a9d164fd9e6966399f2051c963ac98372c4183244ac Stored in directory: /tmp/pip-ephem-wheel-cache-akp4604p/wheels/75/78/21/68b124549c9bdc94f822c02fb9aa3578a669843f9767776bca Building wheel for parse (setup.py): started Building wheel for parse (setup.py): finished with status 'done' Created wheel for parse: filename=parse-1.19.0-py3-none-any.whl size=24591 sha256=df3be34228a10d3b4c435f6309616acee9e09e5bde28e298b5f6ae6ae06facde Stored in directory: /tmp/pip-ephem-wheel-cache-akp4604p/wheels/e5/33/1f/68392720485b3ecf125a69e700baaab7624616deedea2fa6e2 Building wheel for prodict (setup.py): started Building wheel for prodict (setup.py): finished with status 'done' Created wheel for prodict: filename=prodict-0.8.18-py3-none-any.whl size=4224 sha256=a961616a325ceff0d8169885789b37c8d397fdc874dd7ee09b2fbc3eebe43f27 Stored in directory: /tmp/pip-ephem-wheel-cache-akp4604p/wheels/f7/87/da/f7f3dad926a33705d391981f28b2c2d2b4bc7e1e4804e6fdfe Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.3-py3-none-any.whl size=492035 sha256=9ea420d53e87a4fad3826b01e6b68fed0e67348f53a01f7ca22b9875ac3d8fe0 Stored in directory: /tmp/pip-ephem-wheel-cache-akp4604p/wheels/a0/0b/ee/e6994fadb42c1354dcccb139b0bf2795271bddfe6253ccdf11 Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13723 sha256=2f6acaafd06e3db6c767452692e958042eeeab28a267b20a6b6b731e05d1c7d4 Stored in directory: /tmp/pip-ephem-wheel-cache-akp4604p/wheels/56/ea/58/ead137b087d9e326852a851351d1debf4ada529b6ac0ec4e8c Successfully built bs4 parse prodict future docopt Installing collected packages: prodict, parse, emod-malaria, docopt, zipp, xdg, tqdm, threadpoolctl, tabulate, soupsieve, pyyaml, python-dateutil, pyproj, pyparsing, pycparser, pluggy, numpy, natsort, more-itertools, lz4, kiwisolver, joblib, jinja2, jeepney, humanfriendly, graphviz, geographiclib, future, fonttools, filelock, diskcache, cycler, click, backoff, astunparse, astor, yarg, shapely, scipy, pyCOMPS, pandas, packaging, jaraco.classes, importlib-resources, importlib-metadata, contourpy, coloredlogs, cffi, beautifulsoup4, scikit-learn, pygit2, pipreqs, matplotlib, cryptography, bs4, SecretStorage, idmtools, emod-api, keyring, idmtools-platform-comps, idmtools-models, emodpy Attempting uninstall: jinja2 Found existing installation: Jinja2 3.0.3 Uninstalling Jinja2-3.0.3: Successfully uninstalled Jinja2-3.0.3 Attempting uninstall: packaging Found existing installation: packaging 23.0 Uninstalling packaging-23.0: Successfully uninstalled packaging-23.0 Successfully installed SecretStorage-3.3.3 astor-0.8.1 astunparse-1.6.3 backoff-2.2.1 beautifulsoup4-4.12.0 bs4-0.0.1 cffi-1.15.1 click-7.1.2 coloredlogs-15.0.1 contourpy-1.0.7 cryptography-40.0.1 cycler-0.11.0 diskcache-5.4.0 docopt-0.6.2 emod-api-1.28.5 emod-malaria-0.0.42 emodpy-1.21.0 filelock-3.10.7 fonttools-4.39.3 future-0.18.3 geographiclib-2.0 graphviz-0.20.1 humanfriendly-10.0 idmtools-1.7.6 idmtools-models-1.7.6 idmtools-platform-comps-1.7.6 importlib-metadata-6.1.0 importlib-resources-5.12.0 jaraco.classes-3.2.3 jeepney-0.8.0 jinja2-3.1.2 joblib-1.2.0 keyring-23.13.1 kiwisolver-1.4.4 lz4-4.3.2 matplotlib-3.7.1 more-itertools-9.0.0 natsort-8.2.0 numpy-1.24.2 packaging-21.3 pandas-1.5.3 parse-1.19.0 pipreqs-0.4.11 pluggy-1.0.0 prodict-0.8.18 pyCOMPS-2.10.0 pycparser-2.21 pygit2-1.10.1 pyparsing-3.0.9 pyproj-3.5.0 python-dateutil-2.8.2 pyyaml-6.0 scikit-learn-1.2.2 scipy-1.10.1 shapely-2.0.1 soupsieve-2.4 tabulate-0.9.0 threadpoolctl-3.1.0 tqdm-4.65.0 xdg-6.0.0 yarg-0.1.9 zipp-3.15.0 [rtd-command-info] start-time: 2023-03-31T21:46:44.246105Z, end-time: 2023-03-31T21:46:48.401041Z, duration: 4, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/artifactory/api/pypi/idm-pypi-production/simple Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting sphinx-copybutton~=0.3.1 Downloading sphinx_copybutton-0.3.3-py3-none-any.whl (12 kB) Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.2-py2.py3-none-any.whl (9.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.1/9.1 MB 118.8 MB/s eta 0:00:00 Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinxcontrib-programoutput~=0.16 Downloading sphinxcontrib_programoutput-0.17-py2.py3-none-any.whl (22 kB) Collecting sphinx~=4.4.0 Downloading Sphinx-4.4.0-py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 241.2 MB/s eta 0:00:00 Collecting sphinxext.remoteliteralinclude Downloading sphinxext_remoteliteralinclude-0.4.0-py3-none-any.whl (6.4 kB) Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (0.17.1) Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.16.0) Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2.28.2) Collecting docutils Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 548.2/548.2 kB 272.6 MB/s eta 0:00:00 Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.6/90.6 kB 236.9 MB/s eta 0:00:00 Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.14.0) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (3.1.2) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.2.0) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (21.3) Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (1.1.5) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.12.1) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (1.4.1) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Requirement already satisfied: importlib-metadata>=4.4 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (6.1.0) Collecting sphinxcontrib-htmlhelp>=2.0.0 Downloading sphinxcontrib_htmlhelp-2.0.1-py3-none-any.whl (99 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 99.8/99.8 kB 248.5 MB/s eta 0:00:00 Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.4-py3-none-any.whl (120 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 120.6/120.6 kB 252.4 MB/s eta 0:00:00 Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (0.7.13) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 kB 238.1 MB/s eta 0:00:00 Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from babel>=1.3->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2023.3) Requirement already satisfied: zipp>=0.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from importlib-metadata>=4.4->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (3.15.0) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from Jinja2>=2.3->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (2.1.2) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (3.4) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (1.26.15) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (2022.12.7) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 1)) (3.1.0) Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages (from packaging->sphinx~=4.4.0->-r docs/requirements.txt (line 6)) (3.0.9) Installing collected packages: sphinxext.remoteliteralinclude, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pockets, docutils, sphinxcontrib-napoleon, sphinx, plantweb, sphinxcontrib-programoutput, sphinx-rtd-theme, sphinx-copybutton Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed docutils-0.16 plantweb-1.2.1 pockets-0.9.1 sphinx-4.4.0 sphinx-copybutton-0.3.3 sphinx-rtd-theme-0.5.2 sphinxcontrib-applehelp-1.0.4 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-programoutput-0.17 sphinxcontrib-qthelp-1.0.3 sphinxext.remoteliteralinclude-0.4.0 [rtd-command-info] start-time: 2023-03-31T21:46:48.640595Z, end-time: 2023-03-31T21:46:50.047432Z, duration: 1, exit-code: 0 python ./setup.py install --force running install running bdist_egg running egg_info creating emodpy_malaria.egg-info writing emodpy_malaria.egg-info/PKG-INFO writing dependency_links to emodpy_malaria.egg-info/dependency_links.txt writing requirements to emodpy_malaria.egg-info/requires.txt writing top-level names to emodpy_malaria.egg-info/top_level.txt writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest file 'emodpy_malaria.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'emodpy_malaria.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/emodpy_malaria copying emodpy_malaria/malaria_vector_species_params.py -> build/lib/emodpy_malaria copying emodpy_malaria/vector_config.py -> build/lib/emodpy_malaria copying emodpy_malaria/malaria_config.py -> build/lib/emodpy_malaria copying emodpy_malaria/__init__.py -> build/lib/emodpy_malaria creating build/lib/tests copying tests/run_all_sft_tests.py -> build/lib/tests copying tests/add_itn.py -> build/lib/tests copying tests/__init__.py -> build/lib/tests creating build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_utils.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_request.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_variable.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_set.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/data_sources.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_metadata.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/weather_data.py -> build/lib/emodpy_malaria/weather copying emodpy_malaria/weather/__init__.py -> build/lib/emodpy_malaria/weather creating build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/MalariaDemographics.py -> build/lib/emodpy_malaria/demographics copying emodpy_malaria/demographics/__init__.py -> build/lib/emodpy_malaria/demographics creating build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/builtin.py -> build/lib/emodpy_malaria/reporters copying emodpy_malaria/reporters/__init__.py -> build/lib/emodpy_malaria/reporters creating build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/common.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/adherentdrug.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/sugartrap.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/scale_larval_habitats.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/usage_dependent_bednet.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/vaccine.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/larvicide.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outbreak.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/outdoorrestkill.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/irs.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/community_health_worker.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/__init__.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/inputeir.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/mosquitorelease.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/treatment_seeking.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/spacespraying.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/diag_survey.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/drug_campaign.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/ivermectin.py -> build/lib/emodpy_malaria/interventions copying emodpy_malaria/interventions/bednet.py -> build/lib/emodpy_malaria/interventions creating build/lib/tests/unittests copying tests/unittests/test_treatment_seeking.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_reporters.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_config.py -> build/lib/tests/unittests copying tests/unittests/manifest.py -> build/lib/tests/unittests copying tests/unittests/test_import.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions.py -> build/lib/tests/unittests copying tests/unittests/test_demog.py -> build/lib/tests/unittests copying tests/unittests/test_malaria_interventions_as_files.py -> build/lib/tests/unittests copying tests/unittests/__init__.py -> build/lib/tests/unittests copying tests/unittests/schema_path_file.py -> build/lib/tests/unittests copying tests/unittests/test_campaign_common.py -> build/lib/tests/unittests copying tests/unittests/get_unittest_coverage.py -> build/lib/tests/unittests creating build/lib/tests/unittests/weather copying tests/unittests/weather/test_weather_metadata.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_e2e_comps.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_e2e.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/__init__.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_weather_data.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_weather_request.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_weather_set.py -> build/lib/tests/unittests/weather copying tests/unittests/weather/test_weather_scenarios.py -> build/lib/tests/unittests/weather copying emodpy_malaria/malaria_drug_params.csv -> build/lib/emodpy_malaria creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_utils.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_request.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_variable.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_set.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/data_sources.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_metadata.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/weather_data.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/weather/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/weather copying build/lib/emodpy_malaria/malaria_vector_species_params.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/MalariaDemographics.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/demographics/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/demographics copying build/lib/emodpy_malaria/vector_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/malaria_config.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/builtin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/reporters/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/reporters copying build/lib/emodpy_malaria/malaria_drug_params.csv -> build/bdist.linux-x86_64/egg/emodpy_malaria copying build/lib/emodpy_malaria/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria creating build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/common.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/adherentdrug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/sugartrap.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/scale_larval_habitats.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/usage_dependent_bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/vaccine.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/larvicide.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outbreak.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/outdoorrestkill.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/irs.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/community_health_worker.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/__init__.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/inputeir.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/mosquitorelease.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/treatment_seeking.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/spacespraying.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/diag_survey.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/drug_campaign.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/ivermectin.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions copying build/lib/emodpy_malaria/interventions/bednet.py -> build/bdist.linux-x86_64/egg/emodpy_malaria/interventions creating build/bdist.linux-x86_64/egg/tests copying build/lib/tests/run_all_sft_tests.py -> build/bdist.linux-x86_64/egg/tests copying build/lib/tests/add_itn.py -> build/bdist.linux-x86_64/egg/tests copying build/lib/tests/__init__.py -> build/bdist.linux-x86_64/egg/tests creating build/bdist.linux-x86_64/egg/tests/unittests creating build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_weather_metadata.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_e2e_comps.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_e2e.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_weather_data.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_weather_request.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_weather_set.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/weather/test_weather_scenarios.py -> build/bdist.linux-x86_64/egg/tests/unittests/weather copying build/lib/tests/unittests/test_treatment_seeking.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_reporters.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_config.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/manifest.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_import.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_demog.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_malaria_interventions_as_files.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/__init__.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/schema_path_file.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/test_campaign_common.py -> build/bdist.linux-x86_64/egg/tests/unittests copying build/lib/tests/unittests/get_unittest_coverage.py -> build/bdist.linux-x86_64/egg/tests/unittests byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_utils.py to weather_utils.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_request.py to weather_request.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_variable.py to weather_variable.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_set.py to weather_set.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/data_sources.py to data_sources.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_metadata.py to weather_metadata.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/weather_data.py to weather_data.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/weather/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_vector_species_params.py to malaria_vector_species_params.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/MalariaDemographics.py to MalariaDemographics.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/demographics/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/vector_config.py to vector_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/malaria_config.py to malaria_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/builtin.py to builtin.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/reporters/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/common.py to common.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/adherentdrug.py to adherentdrug.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/sugartrap.py to sugartrap.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/scale_larval_habitats.py to scale_larval_habitats.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug.py to drug.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/usage_dependent_bednet.py to usage_dependent_bednet.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/vaccine.py to vaccine.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/larvicide.py to larvicide.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outbreak.py to outbreak.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/outdoorrestkill.py to outdoorrestkill.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/irs.py to irs.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/community_health_worker.py to community_health_worker.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/inputeir.py to inputeir.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/mosquitorelease.py to mosquitorelease.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/treatment_seeking.py to treatment_seeking.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/spacespraying.py to spacespraying.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/diag_survey.py to diag_survey.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/drug_campaign.py to drug_campaign.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/ivermectin.py to ivermectin.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/emodpy_malaria/interventions/bednet.py to bednet.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/run_all_sft_tests.py to run_all_sft_tests.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/add_itn.py to add_itn.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_metadata.py to test_weather_metadata.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_e2e_comps.py to test_e2e_comps.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_e2e.py to test_e2e.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_data.py to test_weather_data.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_request.py to test_weather_request.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_set.py to test_weather_set.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/weather/test_weather_scenarios.py to test_weather_scenarios.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_treatment_seeking.py to test_treatment_seeking.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_reporters.py to test_malaria_reporters.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_config.py to test_malaria_config.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/manifest.py to manifest.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_import.py to test_import.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions.py to test_malaria_interventions.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_demog.py to test_demog.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_malaria_interventions_as_files.py to test_malaria_interventions_as_files.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/schema_path_file.py to schema_path_file.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/test_campaign_common.py to test_campaign_common.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/tests/unittests/get_unittest_coverage.py to get_unittest_coverage.cpython-38.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying emodpy_malaria.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... emodpy_malaria.__pycache__.malaria_config.cpython-38: module references __file__ tests.__pycache__.run_all_sft_tests.cpython-38: module references __file__ tests.unittests.__pycache__.manifest.cpython-38: module references __file__ tests.unittests.__pycache__.schema_path_file.cpython-38: module references __file__ tests.unittests.__pycache__.test_campaign_common.cpython-38: module references __file__ tests.unittests.__pycache__.test_demog.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_config.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_interventions.cpython-38: module references __file__ tests.unittests.__pycache__.test_malaria_reporters.cpython-38: module references __file__ tests.unittests.__pycache__.test_treatment_seeking.cpython-38: module references __file__ tests.unittests.weather.__pycache__.__init__.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_e2e.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_e2e_comps.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_weather_data.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_weather_metadata.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_weather_request.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_weather_scenarios.cpython-38: module references __file__ tests.unittests.weather.__pycache__.test_weather_set.cpython-38: module references __file__ creating dist creating 'dist/emodpy_malaria-3.0.3-py3.8.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing emodpy_malaria-3.0.3-py3.8.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/emodpy_malaria-3.0.3-py3.8.egg Extracting emodpy_malaria-3.0.3-py3.8.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Adding emodpy-malaria 3.0.3 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages/emodpy_malaria-3.0.3-py3.8.egg Processing dependencies for emodpy-malaria==3.0.3 Searching for emod-malaria==0.0.42 Best match: emod-malaria 0.0.42 Adding emod-malaria 0.0.42 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for emod-api==1.28.5 Best match: emod-api 1.28.5 Adding emod-api 1.28.5 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for emodpy==1.21.0 Best match: emodpy 1.21.0 Adding emodpy 1.21.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for numpy==1.24.2 Best match: numpy 1.24.2 Adding numpy 1.24.2 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing f2py3.8 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for scikit-learn==1.2.2 Best match: scikit-learn 1.2.2 Adding scikit-learn 1.2.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyproj==3.5.0 Best match: pyproj 3.5.0 Adding pyproj 3.5.0 to easy-install.pth file Installing pyproj script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for PyYAML==6.0 Best match: PyYAML 6.0 Adding PyYAML 6.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for graphviz==0.20.1 Best match: graphviz 0.20.1 Adding graphviz 0.20.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for matplotlib==3.7.1 Best match: matplotlib 3.7.1 Adding matplotlib 3.7.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for shapely==2.0.1 Best match: shapely 2.0.1 Adding shapely 2.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pandas==1.5.3 Best match: pandas 1.5.3 Adding pandas 1.5.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for scipy==1.10.1 Best match: scipy 1.10.1 Adding scipy 1.10.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for parse==1.19.0 Best match: parse 1.19.0 Adding parse 1.19.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for lz4==4.3.2 Best match: lz4 4.3.2 Adding lz4 4.3.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for geographiclib==2.0 Best match: geographiclib 2.0 Adding geographiclib 2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for prodict==0.8.18 Best match: prodict 0.8.18 Adding prodict 0.8.18 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyCOMPS==2.10.0 Best match: pyCOMPS 2.10.0 Adding pyCOMPS 2.10.0 to easy-install.pth file Installing comps-util script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools-models==1.7.6 Best match: idmtools-models 1.7.6 Adding idmtools-models 1.7.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for astor==0.8.1 Best match: astor 0.8.1 Adding astor 0.8.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools==1.7.6 Best match: idmtools 1.7.6 Adding idmtools 1.7.6 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for keyring==23.13.1 Best match: keyring 23.13.1 Adding keyring 23.13.1 to easy-install.pth file Installing keyring script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for astunparse==1.6.3 Best match: astunparse 1.6.3 Adding astunparse 1.6.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idmtools-platform-comps==1.7.6 Best match: idmtools-platform-comps 1.7.6 Adding idmtools-platform-comps 1.7.6 to easy-install.pth file Installing comps-cli script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for click==7.1.2 Best match: click 7.1.2 Adding click 7.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for bs4==0.0.1 Best match: bs4 0.0.1 Adding bs4 0.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for threadpoolctl==3.1.0 Best match: threadpoolctl 3.1.0 Adding threadpoolctl 3.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for joblib==1.2.0 Best match: joblib 1.2.0 Adding joblib 1.2.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for certifi==2022.12.7 Best match: certifi 2022.12.7 Adding certifi 2022.12.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for kiwisolver==1.4.4 Best match: kiwisolver 1.4.4 Adding kiwisolver 1.4.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pyparsing==3.0.9 Best match: pyparsing 3.0.9 Adding pyparsing 3.0.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for Pillow==9.4.0 Best match: Pillow 9.4.0 Adding Pillow 9.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for contourpy==1.0.7 Best match: contourpy 1.0.7 Adding contourpy 1.0.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for packaging==21.3 Best match: packaging 21.3 Adding packaging 21.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cycler==0.11.0 Best match: cycler 0.11.0 Adding cycler 0.11.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for python-dateutil==2.8.2 Best match: python-dateutil 2.8.2 Adding python-dateutil 2.8.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for fonttools==4.39.3 Best match: fonttools 4.39.3 Adding fonttools 4.39.3 to easy-install.pth file Installing fonttools script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pyftmerge script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pyftsubset script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing ttx script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for importlib-resources==5.12.0 Best match: importlib-resources 5.12.0 Adding importlib-resources 5.12.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pytz==2023.3 Best match: pytz 2023.3 Adding pytz 2023.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for requests==2.28.2 Best match: requests 2.28.2 Adding requests 2.28.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for xdg==6.0.0 Best match: xdg 6.0.0 Adding xdg 6.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for future==0.18.3 Best match: future 0.18.3 Adding future 0.18.3 to easy-install.pth file Installing futurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Installing pasteurize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for Jinja2==3.1.2 Best match: Jinja2 3.1.2 Adding Jinja2 3.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for backoff==2.2.1 Best match: backoff 2.2.1 Adding backoff 2.2.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pygit2==1.10.1 Best match: pygit2 1.10.1 Adding pygit2 1.10.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pipreqs==0.4.11 Best match: pipreqs 0.4.11 Adding pipreqs 0.4.11 to easy-install.pth file Installing pipreqs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for filelock==3.10.7 Best match: filelock 3.10.7 Adding filelock 3.10.7 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for more-itertools==9.0.0 Best match: more-itertools 9.0.0 Adding more-itertools 9.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for diskcache==5.4.0 Best match: diskcache 5.4.0 Adding diskcache 5.4.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for coloredlogs==15.0.1 Best match: coloredlogs 15.0.1 Adding coloredlogs 15.0.1 to easy-install.pth file Installing coloredlogs script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for tqdm==4.65.0 Best match: tqdm 4.65.0 Adding tqdm 4.65.0 to easy-install.pth file Installing tqdm script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for tabulate==0.9.0 Best match: tabulate 0.9.0 Adding tabulate 0.9.0 to easy-install.pth file Installing tabulate script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pluggy==1.0.0 Best match: pluggy 1.0.0 Adding pluggy 1.0.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for SecretStorage==3.3.3 Best match: SecretStorage 3.3.3 Adding SecretStorage 3.3.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for jaraco.classes==3.2.3 Best match: jaraco.classes 3.2.3 Adding jaraco.classes 3.2.3 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for jeepney==0.8.0 Best match: jeepney 0.8.0 Adding jeepney 0.8.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for importlib-metadata==6.1.0 Best match: importlib-metadata 6.1.0 Adding importlib-metadata 6.1.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for wheel==0.40.0 Best match: wheel 0.40.0 Adding wheel 0.40.0 to easy-install.pth file Installing wheel script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for natsort==8.2.0 Best match: natsort 8.2.0 Adding natsort 8.2.0 to easy-install.pth file Installing natsort script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for beautifulsoup4==4.12.0 Best match: beautifulsoup4 4.12.0 Adding beautifulsoup4 4.12.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for zipp==3.15.0 Best match: zipp 3.15.0 Adding zipp 3.15.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for charset-normalizer==3.1.0 Best match: charset-normalizer 3.1.0 Adding charset-normalizer 3.1.0 to easy-install.pth file Installing normalizer script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for idna==3.4 Best match: idna 3.4 Adding idna 3.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for urllib3==1.26.15 Best match: urllib3 1.26.15 Adding urllib3 1.26.15 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for MarkupSafe==2.1.2 Best match: MarkupSafe 2.1.2 Adding MarkupSafe 2.1.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cffi==1.15.1 Best match: cffi 1.15.1 Adding cffi 1.15.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for docopt==0.6.2 Best match: docopt 0.6.2 Adding docopt 0.6.2 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for yarg==0.1.9 Best match: yarg 0.1.9 Adding yarg 0.1.9 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for humanfriendly==10.0 Best match: humanfriendly 10.0 Adding humanfriendly 10.0 to easy-install.pth file Installing humanfriendly script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/bin Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for cryptography==40.0.1 Best match: cryptography 40.0.1 Adding cryptography 40.0.1 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for soupsieve==2.4 Best match: soupsieve 2.4 Adding soupsieve 2.4 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Searching for pycparser==2.21 Best match: pycparser 2.21 Adding pycparser 2.21 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/envs/latest/lib/python3.8/site-packages Finished processing dependencies for emodpy-malaria==3.0.3 [rtd-command-info] start-time: 2023-03-31T21:46:52.581482Z, end-time: 2023-03-31T21:46:52.643184Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Sphinx Demo docs build configuration file, created by # sphinx-quickstart on Fri Aug 26 16:52:16 2016. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # docs root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme import configparser from datetime import datetime from urllib.request import urlretrieve if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "emodpy-malaria" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ tags.add('emodpymalaria') # If your docs needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinxcontrib.napoleon', 'sphinx.ext.todo', 'plantweb.directive', 'sphinxcontrib.programoutput', 'sphinx_copybutton', 'sphinx.ext.intersphinx', 'sphinxext.remoteliteralinclude' ] plantuml = 'plantweb' autodoc_default_options = { 'member-order': 'bysource', 'members': None, 'exclude-members': '__all__' } autodoc_mock_imports = [] napoleon_google_docstring = True # napoleon_numpy_docstring = True # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'emodpy-malaria' copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.' author = u'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. #current_path = os.path.dirname(__file__) #version_path = os.path.join(current_path, '..', '.bumpversion.cfg') #config = configparser.ConfigParser() #config.read(version_path) #version = config['bumpversion']['current_version'] # The full version, including alpha/beta/rc tags. # release = u'1.0' # The language for content autogenerated by Sphinx. Refer to docs # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the docs for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # docs. # # # html_theme_options = { # } # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # The name for this set of Sphinx documents. # " v docs" by default. # # html_title = u'Sphinx Demo v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # html_logo = "images/IDM_white.png" # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'css_files': [ '_static/theme_overrides.css', '_static/copy_button.css' ] } html_js_files = ['show_block_by_os.js'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the docs. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # html_show_sourcelink = False # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # html_show_sphinx = False # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # html_use_opensearch = 'www.idmod.org/docs/' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'emodpy-malaria' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'emodpy-malaria-docs.tex', u'emodpy-malaria', u'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'emodpy-malaria-docs', u'emodpy-malaria', author, 'Institute for Disease Modeling', 'How to use emodpy for malaria simulations.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'emod_api': ('https://docs.idmod.org/projects/emod-api/en/latest/', None), 'emodpy': ('https://docs.idmod.org/projects/emodpy/en/latest/', None), 'idmtools': ('https://docs.idmod.org/projects/idmtools/en/latest/', None), 'emod-malaria': ('https://docs.idmod.org/projects/emod-malaria/en/latest/', None), 'pycomps': ('https://docs.idmod.org/projects/pycomps/en/latest/', None) } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} # This following legacy behavior will gradually be sliced out until its deprecated and removed. # Skipped for Sphinx 6+ # Skipped by internal Feature flag SKIP_SPHINX_HTML_THEME_PATH # Skipped by all new projects since SKIP_SPHINX_HTML_THEME_PATH's introduction (jan 2023) if ( using_rtd_theme and version_info < (6,0) and not False ): theme = importlib.import_module('sphinx_rtd_theme') if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] # Define websupport2_base_url and websupport2_static_url if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("2.4.3", "/en/2.4.3/"), ("2.3.6", "/en/2.3.6/"), ("v2.3.1", "/en/v2.3.1/"), ("2.2.1", "/en/2.2.1/"), ("v2.1.1", "/en/v2.1.1/"), ("v2.0.2", "/en/v2.0.2/"), ("v2.0.1", "/en/v2.0.1/"), ("v1.20.2", "/en/v1.20.2/"), ("v1.1.19", "/en/v1.1.19/"), ("v1.1.0", "/en/v1.1.0/"), ("v1.0.10", "/en/v1.0.10/"), ("v1.0.9", "/en/v1.0.9/"), ("v1.0.2", "/en/v1.0.2/"), ("v3.0.1release", "/en/v3.0.1release/"), ("v.2.2.0", "/en/v.2.2.0/"), ("2.3.6release", "/en/2.3.6release/"), ("v0.0.61", "/en/v0.0.61/"), ("v0.0.50", "/en/v0.0.50/"), ("0.0.50", "/en/0.0.50/"), ("v0.0.48", "/en/v0.0.48/"), ("v0.0.45", "/en/v0.0.45/"), ("v0.0.44", "/en/v0.0.44/"), ("v0.0.29", "/en/v0.0.29/"), ("v0.0.18", "/en/v0.0.18/"), ], 'downloads': [ ("pdf", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/pdf/"), ("html", "//docs.idmod.org/_/downloads/emodpy-malaria/en/latest/htmlzip/"), ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-emodpy-malaria', 'name': u'emodpy-malaria', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://docs.idmod.org/projects/emodpy-malaria/en/latest/', 'analytics_code': 'UA-87656833-3', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'InstituteforDiseaseModeling', 'proxied_api_host': '/_', 'github_repo': 'emodpy-malaria', 'github_version': 'main', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'main', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'main', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'UA-87656833-3', 'global_analytics_code': 'UA-17997319-2', 'commit': 'cc037835', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-emodpy-malaria/builds/1387730/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2023-03-31T21:46:52.866725Z, end-time: 2023-03-31T21:47:04.444941Z, duration: 11, exit-code: 0 python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 42 source files that are out of date updating environment: [new config] 42 added, 0 changed, 0 removed reading sources... [ 2%] emodpy_malaria reading sources... [ 4%] emodpy_malaria.demographics reading sources... [ 7%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 9%] emodpy_malaria.interventions reading sources... [ 11%] emodpy_malaria.interventions.adherentdrug reading sources... [ 14%] emodpy_malaria.interventions.bednet reading sources... [ 16%] emodpy_malaria.interventions.common reading sources... [ 19%] emodpy_malaria.interventions.community_health_worker reading sources... [ 21%] emodpy_malaria.interventions.diag_survey reading sources... [ 23%] emodpy_malaria.interventions.drug reading sources... [ 26%] emodpy_malaria.interventions.drug_campaign reading sources... [ 28%] emodpy_malaria.interventions.inputeir reading sources... [ 30%] emodpy_malaria.interventions.irs reading sources... [ 33%] emodpy_malaria.interventions.ivermectin reading sources... [ 35%] emodpy_malaria.interventions.larvicide reading sources... [ 38%] emodpy_malaria.interventions.mosquitorelease reading sources... [ 40%] emodpy_malaria.interventions.outbreak reading sources... [ 42%] emodpy_malaria.interventions.outdoorrestkill reading sources... [ 45%] emodpy_malaria.interventions.scale_larval_habitats reading sources... [ 47%] emodpy_malaria.interventions.spacespraying reading sources... [ 50%] emodpy_malaria.interventions.sugartrap reading sources... [ 52%] emodpy_malaria.interventions.treatment_seeking reading sources... [ 54%] emodpy_malaria.interventions.usage_dependent_bednet reading sources... [ 57%] emodpy_malaria.interventions.vaccine reading sources... [ 59%] emodpy_malaria.malaria_config reading sources... [ 61%] emodpy_malaria.malaria_vector_species_params reading sources... [ 64%] emodpy_malaria.reporters reading sources... [ 66%] emodpy_malaria.reporters.builtin /!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.7.6/configuration.html for details on how to configure idmtools. reading sources... [ 69%] emodpy_malaria.vector_config reading sources... [ 71%] emodpy_malaria.weather reading sources... [ 73%] emodpy_malaria.weather.data_sources reading sources... [ 76%] emodpy_malaria.weather.weather_data reading sources... [ 78%] emodpy_malaria.weather.weather_metadata reading sources... [ 80%] emodpy_malaria.weather.weather_request reading sources... [ 83%] emodpy_malaria.weather.weather_set reading sources... [ 85%] emodpy_malaria.weather.weather_utils reading sources... [ 88%] emodpy_malaria.weather.weather_variable reading sources... [ 90%] faq reading sources... [ 92%] index reading sources... [ 95%] installation reading sources... [ 97%] installation-basic reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 2%] emodpy_malaria writing output... [ 4%] emodpy_malaria.demographics writing output... [ 7%] emodpy_malaria.demographics.MalariaDemographics writing output... [ 9%] emodpy_malaria.interventions writing output... [ 11%] emodpy_malaria.interventions.adherentdrug writing output... [ 14%] emodpy_malaria.interventions.bednet writing output... [ 16%] emodpy_malaria.interventions.common writing output... [ 19%] emodpy_malaria.interventions.community_health_worker writing output... [ 21%] emodpy_malaria.interventions.diag_survey writing output... [ 23%] emodpy_malaria.interventions.drug writing output... [ 26%] emodpy_malaria.interventions.drug_campaign writing output... [ 28%] emodpy_malaria.interventions.inputeir writing output... [ 30%] emodpy_malaria.interventions.irs writing output... [ 33%] emodpy_malaria.interventions.ivermectin writing output... [ 35%] emodpy_malaria.interventions.larvicide writing output... [ 38%] emodpy_malaria.interventions.mosquitorelease writing output... [ 40%] emodpy_malaria.interventions.outbreak writing output... [ 42%] emodpy_malaria.interventions.outdoorrestkill writing output... [ 45%] emodpy_malaria.interventions.scale_larval_habitats writing output... [ 47%] emodpy_malaria.interventions.spacespraying writing output... [ 50%] emodpy_malaria.interventions.sugartrap writing output... [ 52%] emodpy_malaria.interventions.treatment_seeking writing output... [ 54%] emodpy_malaria.interventions.usage_dependent_bednet writing output... [ 57%] emodpy_malaria.interventions.vaccine writing output... [ 59%] emodpy_malaria.malaria_config writing output... [ 61%] emodpy_malaria.malaria_vector_species_params writing output... [ 64%] emodpy_malaria.reporters writing output... [ 66%] emodpy_malaria.reporters.builtin writing output... [ 69%] emodpy_malaria.vector_config writing output... [ 71%] emodpy_malaria.weather writing output... [ 73%] emodpy_malaria.weather.data_sources writing output... [ 76%] emodpy_malaria.weather.weather_data writing output... [ 78%] emodpy_malaria.weather.weather_metadata writing output... [ 80%] emodpy_malaria.weather.weather_request writing output... [ 83%] emodpy_malaria.weather.weather_set writing output... [ 85%] emodpy_malaria.weather.weather_utils writing output... [ 88%] emodpy_malaria.weather.weather_variable writing output... [ 90%] faq writing output... [ 92%] index writing output... [ 95%] installation writing output... [ 97%] installation-basic writing output... [100%] modules generating indices... genindex py-modindex done writing additional pages... search opensearch done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in ../_readthedocs/html. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2023-03-31T21:47:04.655679Z, end-time: 2023-03-31T21:47:15.581446Z, duration: 10, exit-code: 0 python -m sphinx -T -E -W --keep-going -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 42 added, 0 changed, 0 removed reading sources... [ 2%] emodpy_malaria reading sources... [ 4%] emodpy_malaria.demographics reading sources... [ 7%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 9%] emodpy_malaria.interventions reading sources... [ 11%] emodpy_malaria.interventions.adherentdrug reading sources... [ 14%] emodpy_malaria.interventions.bednet reading sources... [ 16%] emodpy_malaria.interventions.common reading sources... [ 19%] emodpy_malaria.interventions.community_health_worker reading sources... [ 21%] emodpy_malaria.interventions.diag_survey reading sources... [ 23%] emodpy_malaria.interventions.drug reading sources... [ 26%] emodpy_malaria.interventions.drug_campaign reading sources... [ 28%] emodpy_malaria.interventions.inputeir reading sources... [ 30%] emodpy_malaria.interventions.irs reading sources... [ 33%] emodpy_malaria.interventions.ivermectin reading sources... [ 35%] emodpy_malaria.interventions.larvicide reading sources... [ 38%] emodpy_malaria.interventions.mosquitorelease reading sources... [ 40%] emodpy_malaria.interventions.outbreak reading sources... [ 42%] emodpy_malaria.interventions.outdoorrestkill reading sources... [ 45%] emodpy_malaria.interventions.scale_larval_habitats reading sources... [ 47%] emodpy_malaria.interventions.spacespraying reading sources... [ 50%] emodpy_malaria.interventions.sugartrap reading sources... [ 52%] emodpy_malaria.interventions.treatment_seeking reading sources... [ 54%] emodpy_malaria.interventions.usage_dependent_bednet reading sources... [ 57%] emodpy_malaria.interventions.vaccine reading sources... [ 59%] emodpy_malaria.malaria_config reading sources... [ 61%] emodpy_malaria.malaria_vector_species_params reading sources... [ 64%] emodpy_malaria.reporters reading sources... [ 66%] emodpy_malaria.reporters.builtin /!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.7.6/configuration.html for details on how to configure idmtools. reading sources... [ 69%] emodpy_malaria.vector_config reading sources... [ 71%] emodpy_malaria.weather reading sources... [ 73%] emodpy_malaria.weather.data_sources reading sources... [ 76%] emodpy_malaria.weather.weather_data reading sources... [ 78%] emodpy_malaria.weather.weather_metadata reading sources... [ 80%] emodpy_malaria.weather.weather_request reading sources... [ 83%] emodpy_malaria.weather.weather_set reading sources... [ 85%] emodpy_malaria.weather.weather_utils reading sources... [ 88%] emodpy_malaria.weather.weather_variable reading sources... [ 90%] faq reading sources... [ 92%] index reading sources... [ 95%] installation reading sources... [ 97%] installation-basic reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation installation-basic modules emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.adherentdrug emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.community_health_worker emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.larvicide emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.scale_larval_habitats emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.usage_dependent_bednet emodpy_malaria.interventions.vaccine emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.weather emodpy_malaria.weather.data_sources emodpy_malaria.weather.weather_data emodpy_malaria.weather.weather_metadata emodpy_malaria.weather.weather_request emodpy_malaria.weather.weather_set emodpy_malaria.weather.weather_utils emodpy_malaria.weather.weather_variable emodpy_malaria.malaria_config emodpy_malaria.malaria_vector_species_params emodpy_malaria.vector_config faq done writing... done writing additional files... opensearchdone copying static files... done copying extra files... done dumping object inventory... done build succeeded. The HTML page is in ../_readthedocs/htmlzip. Updating searchtools for Read the Docs search... [rtd-command-info] start-time: 2023-03-31T21:47:16.651877Z, end-time: 2023-03-31T21:47:27.224560Z, duration: 10, exit-code: 0 python -m sphinx -T -E -b latex -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/pdf Running Sphinx v4.4.0 loading translations [en]... done making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-api/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emodpy/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/idmtools/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/emod-malaria/en/latest/objects.inv... loading intersphinx inventory from https://docs.idmod.org/projects/pycomps/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [new config] 42 added, 0 changed, 0 removed reading sources... [ 2%] emodpy_malaria reading sources... [ 4%] emodpy_malaria.demographics reading sources... [ 7%] emodpy_malaria.demographics.MalariaDemographics reading sources... [ 9%] emodpy_malaria.interventions reading sources... [ 11%] emodpy_malaria.interventions.adherentdrug reading sources... [ 14%] emodpy_malaria.interventions.bednet reading sources... [ 16%] emodpy_malaria.interventions.common reading sources... [ 19%] emodpy_malaria.interventions.community_health_worker reading sources... [ 21%] emodpy_malaria.interventions.diag_survey reading sources... [ 23%] emodpy_malaria.interventions.drug reading sources... [ 26%] emodpy_malaria.interventions.drug_campaign reading sources... [ 28%] emodpy_malaria.interventions.inputeir reading sources... [ 30%] emodpy_malaria.interventions.irs reading sources... [ 33%] emodpy_malaria.interventions.ivermectin reading sources... [ 35%] emodpy_malaria.interventions.larvicide reading sources... [ 38%] emodpy_malaria.interventions.mosquitorelease reading sources... [ 40%] emodpy_malaria.interventions.outbreak reading sources... [ 42%] emodpy_malaria.interventions.outdoorrestkill reading sources... [ 45%] emodpy_malaria.interventions.scale_larval_habitats reading sources... [ 47%] emodpy_malaria.interventions.spacespraying reading sources... [ 50%] emodpy_malaria.interventions.sugartrap reading sources... [ 52%] emodpy_malaria.interventions.treatment_seeking reading sources... [ 54%] emodpy_malaria.interventions.usage_dependent_bednet reading sources... [ 57%] emodpy_malaria.interventions.vaccine reading sources... [ 59%] emodpy_malaria.malaria_config reading sources... [ 61%] emodpy_malaria.malaria_vector_species_params reading sources... [ 64%] emodpy_malaria.reporters reading sources... [ 66%] emodpy_malaria.reporters.builtin /!\ WARNING: File 'idmtools.ini' Not Found! For details on how to configure idmtools, see https://docs.idmod.org/projects/idmtools/en/v1.7.6/configuration.html for details on how to configure idmtools. reading sources... [ 69%] emodpy_malaria.vector_config reading sources... [ 71%] emodpy_malaria.weather reading sources... [ 73%] emodpy_malaria.weather.data_sources reading sources... [ 76%] emodpy_malaria.weather.weather_data reading sources... [ 78%] emodpy_malaria.weather.weather_metadata reading sources... [ 80%] emodpy_malaria.weather.weather_request reading sources... [ 83%] emodpy_malaria.weather.weather_set reading sources... [ 85%] emodpy_malaria.weather.weather_utils reading sources... [ 88%] emodpy_malaria.weather.weather_variable reading sources... [ 90%] faq reading sources... [ 92%] index reading sources... [ 95%] installation reading sources... [ 97%] installation-basic reading sources... [100%] modules looking for now-outdated files... none found pickling environment... done checking consistency... done processing emodpy-malaria-docs.tex... index installation installation-basic modules emodpy_malaria emodpy_malaria.demographics emodpy_malaria.demographics.MalariaDemographics emodpy_malaria.interventions emodpy_malaria.interventions.adherentdrug emodpy_malaria.interventions.bednet emodpy_malaria.interventions.common emodpy_malaria.interventions.community_health_worker emodpy_malaria.interventions.diag_survey emodpy_malaria.interventions.drug emodpy_malaria.interventions.drug_campaign emodpy_malaria.interventions.inputeir emodpy_malaria.interventions.irs emodpy_malaria.interventions.ivermectin emodpy_malaria.interventions.larvicide emodpy_malaria.interventions.mosquitorelease emodpy_malaria.interventions.outbreak emodpy_malaria.interventions.outdoorrestkill emodpy_malaria.interventions.scale_larval_habitats emodpy_malaria.interventions.spacespraying emodpy_malaria.interventions.sugartrap emodpy_malaria.interventions.treatment_seeking emodpy_malaria.interventions.usage_dependent_bednet emodpy_malaria.interventions.vaccine emodpy_malaria.reporters emodpy_malaria.reporters.builtin emodpy_malaria.weather emodpy_malaria.weather.data_sources emodpy_malaria.weather.weather_data emodpy_malaria.weather.weather_metadata emodpy_malaria.weather.weather_request emodpy_malaria.weather.weather_set emodpy_malaria.weather.weather_utils emodpy_malaria.weather.weather_variable emodpy_malaria.malaria_config emodpy_malaria.malaria_vector_species_params emodpy_malaria.vector_config faq resolving references... done writing... done copying TeX support files... copying TeX support files... done build succeeded. The LaTeX files are in ../_readthedocs/pdf. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). WARNING: Missing searchtools: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-emodpy-malaria/checkouts/latest/_readthedocs/pdf/_static/searchtools.js [rtd-command-info] start-time: 2023-03-31T21:47:27.452046Z, end-time: 2023-03-31T21:47:27.531210Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2023-03-31T21:47:27.760352Z, end-time: 2023-03-31T21:47:31.968250Z, duration: 4, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-emodpy-malaria -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emodpy-malaria" "emodpy-malaria-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emodpy-malaria-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file institute-for-disease-modeling-emodpy-malaria.idx (./institute-for-disease-modeling-emodpy-malaria.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] [1] [2] Chapter 1. LaTeX Warning: Hyper reference `installation-basic::doc' on page 3 undefined on input line 105. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4] Chapter 2. Overfull \hbox (57.31381pt too wide) in paragraph at lines 258--258 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| Underfull \hbox (badness 5274) in paragraph at lines 305--308 []\T1/qtm/m/n/10 Set ini-tial risk for low-medium trans-mis-sion set-tings per: [][]$https : / / wiki . idmod . org / display / MAL / [5] Overfull \hbox (20.56392pt too wide) in paragraph at lines 413--413 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics :module-emodpy_malaria.demographics.MalariaDemographics' on page 6 undefined on input line 415. [6] LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics :module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on input line 448. Overfull \hbox (35.49402pt too wide) in paragraph at lines 457--457 \T1/qtm/m/it/10 pop_filename_out=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 spatial_grid ded_pop_dir\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics :module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on input line 459. LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics :module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on input line 479. LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics :module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on input line 490. LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics :module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on input line 518. LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics :module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on input line 534. LaTeX Warning: Hyper reference `emodpy_malaria.demographics.MalariaDemographics :module-emodpy_malaria.demographics.MalariaDemographics' on page 7 undefined on input line 563. [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 733--736 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 743--747 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 743--747 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [10] Underfull \hbox (badness 10000) in paragraph at lines 878--881 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [11] Underfull \hbox (badness 10000) in paragraph at lines 888--892 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 888--892 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [12] Overfull \hbox (27.94388pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (8.55386pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (4.09389pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 out_on_first_occurrence: [13] Underfull \hbox (badness 10000) in paragraph at lines 1026--1029 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1036--1039 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [14] Underfull \hbox (badness 10000) in paragraph at lines 1118--1121 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1128--1131 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (31.3137pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (29.93373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (61.05371pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (9.43373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (11.09373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (2.46371pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 get_gender: Overfull \hbox (6.86372pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 tial_amount: Overfull \hbox (42.41373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 amount_in_shipment: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (59.27374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 days_between_shipments: Overfull \hbox (11.68375pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 3.40282e+38\T1/qtm/m/n/10 , Overfull \hbox (3.82375pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 tion_config: Overfull \hbox (1.05374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 tional[][][any] Overfull \hbox (60.84373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 max_distributed_per_day: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (0.53372pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 max_stock: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (2.71375pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 ing_period: [15] Overfull \vbox (11.56755pt too high) has occurred while \output is active [16] Underfull \hbox (badness 10000) in paragraph at lines 1203--1206 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [17] Underfull \hbox (badness 10000) in paragraph at lines 1315--1320 []\T1/txtt/bx/n/10 diagnostic_type \T1/qtm/m/n/10 ^^U Type of malaria di-ag-nos -tic used. De-fault is [18] Underfull \hbox (badness 10000) in paragraph at lines 1371--1375 []\T1/qtm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1399--1402 []\T1/txtt/bx/n/10 measurement_sensitivity \T1/qtm/m/n/10 ^^U Set-ting for \T1/ qtm/b/n/10 Mea-sure-ment_Sensitivity \T1/qtm/m/n/10 in Underfull \hbox (badness 10000) in paragraph at lines 1428--1434 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v id-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1428--1434 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 1428--1434 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1436--1441 []\T1/txtt/bx/n/10 disqualifying_properties \T1/qtm/m/n/10 ^^U List of In-di-vi d-u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1436--1441 \T1/qtm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For Underfull \hbox (badness 10000) in paragraph at lines 1436--1441 \T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu e1"}, [19] Underfull \hbox (badness 10000) in paragraph at lines 1464--1468 []\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 [{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop- Overfull \hbox (1.69395pt too wide) in paragraph at lines 1485--1485 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1516--1519 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [20] Underfull \hbox (badness 10000) in paragraph at lines 1526--1529 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [21] Overfull \hbox (72.89397pt too wide) in paragraph at lines 1650--1650 \T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received _Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [22] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [23] Overfull \hbox (25.23418pt too wide) in paragraph at lines 1879--1879 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (54.63417pt too wide) in paragraph at lines 1879--1879 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 24 undefined on input line 1882. Overfull \hbox (30.48416pt too wide) in paragraph at lines 1896--1896 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1896--1896 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 24 undefined on input line 1899. [24] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1913--1913 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1913--1913 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 25 undefined on input line 1916. Underfull \hbox (badness 10000) in paragraph at lines 1914--1918 []\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter- ven-tion to your cam-paign. See Overfull \hbox (40.98413pt too wide) in paragraph at lines 1930--1930 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (70.38412pt too wide) in paragraph at lines 1930--1930 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 25 undefined on input line 1933. [25] Overfull \hbox (35.73415pt too wide) in paragraph at lines 1947--1947 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (65.13414pt too wide) in paragraph at lines 1947--1947 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] LaTeX Warning: Hyper reference `emodpy_malaria.interventions.drug_campaign:emod py_malaria.interventions.drug_campaign.add_drug_campaign' on page 26 undefined on input line 1950. [26] [27] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2104--2104 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2104--2104 \T1/qtm/m/it/10 pelling_decay_time_constant: [28] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2183--2183 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2183--2183 \T1/qtm/m/it/10 pelling_decay_time_constant: [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2389--2392 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2399--2402 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2502--2505 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [34] Underfull \hbox (badness 10000) in paragraph at lines 2592--2595 []\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^ PTEM-PO-RARY_RAINFALL^^Q, ^^PWA- Underfull \hbox (badness 10000) in paragraph at lines 2592--2595 \T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- Overfull \hbox (54.1938pt too wide) in paragraph at lines 2644--2644 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (1.7138pt too wide) in paragraph at lines 2644--2644 \T1/qtm/m/it/10 leased_infectious: Overfull \hbox (19.54382pt too wide) in paragraph at lines 2644--2644 \T1/qtm/m/it/10 leased_microsopridia: [35] Underfull \hbox (badness 10000) in paragraph at lines 2665--2668 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 7576) in paragraph at lines 2681--2683 []\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t o re-lease, sets Re-leased_Type = [36] Underfull \hbox (badness 10000) in paragraph at lines 2692--2695 []\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec- tors re-leased that Underfull \hbox (badness 10000) in paragraph at lines 2692--2695 \T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.29498pt too wide) in paragraph at lines 2692--2695 \T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' [37] Underfull \hbox (badness 10000) in paragraph at lines 2787--2790 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2797--2800 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (12.19392pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (14.34396pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (79.13393pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (118.29388pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Overfull \hbox (74.29391pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 hrp_allele_frequencies_per_genome_location: [38] Underfull \hbox (badness 10000) in paragraph at lines 2883--2886 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [39] Underfull \hbox (badness 10000) in paragraph at lines 2893--2896 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 2934--2940 []\T1/txtt/bx/n/10 drug_resistant_string \T1/qtm/m/n/10 ^^U Used with `BAR-CODE _STRING' or `NU- Underfull \hbox (badness 10000) in paragraph at lines 2955--2961 []\T1/txtt/bx/n/10 barcode_allele_frequencies_per_genome_location \T1/qtm/m/n/1 0 ^^U Used with `AL- [40] Underfull \hbox (badness 10000) in paragraph at lines 2971--2976 []\T1/txtt/bx/n/10 hrp_allele_frequencies_per_genome_location \T1/qtm/m/n/10 ^^ U Used with `AL- Overfull \hbox (17.44391pt too wide) in paragraph at lines 2997--2997 \T1/qtm/m/it/10 timesteps_between_repetitions: [41] Underfull \hbox (badness 10000) in paragraph at lines 3030--3033 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3040--3043 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [42] Underfull \hbox (badness 10000) in paragraph at lines 3128--3131 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3138--3141 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [43] Overfull \hbox (59.44379pt too wide) in paragraph at lines 3228--3228 \T1/qtm/m/it/10 timesteps_between_repetitions: [44] Overfull \hbox (69.94376pt too wide) in paragraph at lines 3305--3305 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 3339--3342 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [45] Overfull \hbox (33.19386pt too wide) in paragraph at lines 3364--3364 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (26.16386pt too wide) in paragraph at lines 3364--3364 \T1/qtm/m/it/10 killing_decay_time_constant: Underfull \hbox (badness 10000) in paragraph at lines 3380--3383 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [46] Underfull \hbox (badness 10000) in paragraph at lines 3498--3501 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [47] [48] Overfull \hbox (5.13391pt too wide) in paragraph at lines 3600--3600 \T1/qtm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 3620--3625 []\T1/txtt/bx/n/10 is \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 properties of individual s to target with the intervention. Underfull \hbox (badness 6094) in paragraph at lines 3620--3625 \T1/txtt/m/sl/10 Default\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 [{ "trigger":"NewC linicalCase","coverage":0.8,"agemin":15, Underfull \hbox (badness 10000) in paragraph at lines 3620--3625 \T1/txtt/m/n/10 "agemax":70, "seek":0.4,"rate":0.3},{"trigger":"NewSevereCase", Underfull \hbox (badness 10000) in paragraph at lines 3643--3645 []\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h ave to receive the Underfull \hbox (badness 10000) in paragraph at lines 3643--3645 \T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi dualProperty1:PropertyValue1", [49] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3679--3679 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tar- Overfull \hbox (84.11362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 get_num_individuals: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (39.17361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]int[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3679--3679 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3679--3679 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [50] Overfull \vbox (839.56755pt too high) has occurred while \output is active [51] Underfull \hbox (badness 6188) in paragraph at lines 3684--3689 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3719--3722 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [52] [53] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3882--3882 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 trig- Overfull \hbox (73.31358pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 trig- Overfull \hbox (93.44359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 gered_campaign_delay: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (46.39362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]float[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (10.27362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 lis- Overfull \hbox (12.89363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ten- Overfull \hbox (52.80362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (0.82362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 - Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3882--3882 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3882--3882 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [54] Overfull \vbox (979.56999pt too high) has occurred while \output is active [55] Underfull \hbox (badness 6188) in paragraph at lines 3887--3893 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3918--3921 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [56] [57] Overfull \hbox (88.19377pt too wide) in paragraph at lines 4095--4095 \T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [58] Underfull \hbox (badness 10000) in paragraph at lines 4139--4142 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4149--4152 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [59] Underfull \hbox (badness 10000) in paragraph at lines 4252--4255 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4262--4265 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [60] [61] Overfull \hbox (31.91403pt too wide) in paragraph at lines 4411--4411 \T1/qtm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 5119) in paragraph at lines 4461--4468 \T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_ GENOME^^Q spe- [62] [63] [64] [65] Overfull \hbox (2.92401pt too wide) in paragraph at lines 4785--4785 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [66] Overfull \hbox (6.20389pt too wide) in paragraph at lines 4858--4858 \T1/qtm/m/it/10 must_have_ip_key_value: Overfull \hbox (1.87387pt too wide) in paragraph at lines 4858--4858 \T1/qtm/m/it/10 must_have_intervention: Overfull \hbox (55.41386pt too wide) in paragraph at lines 4858--4858 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [67] Underfull \hbox (badness 5119) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T emperature^^Q, ^^PBirths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [68] [69] [70] [71] [72] Overfull \hbox (4.70392pt too wide) in paragraph at lines 5504--5504 \T1/qtm/m/it/10 ify_by_clinical_symptoms: [73] Overfull \hbox (38.49373pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 drug_resistant_strings: Overfull \hbox (102.98372pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 drug_resistant_and_hrp_statistic_type: Overfull \hbox (156.42372pt too wide) in paragraph at lines 5550--5550 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m /it/10 '\T1/qtm/m/n/10 , Overfull \hbox (18.46376pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 ip_key_to_collect: Overfull \hbox (4.78375pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 ify_by_gender: Overfull \hbox (37.74379pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 clude_identity_by_xxx: [74] Overfull \hbox (5.15385pt too wide) in paragraph at lines 5656--5656 \T1/qtm/m/it/10 clude_microsporidia: [75] [76] Underfull \hbox (badness 7308) in paragraph at lines 5726--5728 []\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or ex-clude, de-pend-ing on value of [77] Underfull \hbox (badness 10000) in paragraph at lines 5907--5910 \T1/qtm/m/n/10 im-plies one should get data on days Start_Day, Start_Day+Sampli ng_Period, [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6054--6060 []\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma lar-i-a-Trans-mis-sion.csv) is a csv re- Underfull \hbox (badness 6592) in paragraph at lines 6054--6060 \T1/qtm/m/n/10 port that pro-vides data on malaria trans-mis-sion, by track-ing who trans-mit-ted malaria to whom. Underfull \hbox (badness 10000) in paragraph at lines 6054--6060 \T1/qtm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/qtm/b/n/10 Malaria_Model \T1/qtm/m/n/10 is set to Underfull \hbox (badness 5388) in paragraph at lines 6054--6060 \T1/qtm/m/n/10 MALARIA_MECHANISTIC_MODEL_WITH_CO_TRANSMISSION. This re-port is typ-i-cally used as [80] [81] [82] Overfull \hbox (3.4238pt too wide) in paragraph at lines 6418--6418 \T1/qtm/m/it/10 ing.Optional[str] [83] [84] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_request:emodpy_m alaria.weather.weather_request.WeatherRequest' on page 85 undefined on input li ne 6592. [85] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 86 undefined on input line 6676. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherAttributes' on page 86 undefined on inp ut line 6676. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 86 undefined on input line 6676. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_set:emodpy_malar ia.weather.weather_set.WeatherSet' on page 86 undefined on input line 6676. Overfull \hbox (21.75932pt too wide) in paragraph at lines 6676--6676 \T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w eather_variable.WeatherVariable\T1/qtm/m/it/10 , Overfull \hbox (12.24933pt too wide) in paragraph at lines 6676--6676 \T1/qtm/m/it/10 tional[][][\T1/qtm/m/n/10 emodpy_malaria.weather.weather_metada ta.WeatherAttributes\T1/qtm/m/it/10 ] Overfull \hbox (21.75932pt too wide) in paragraph at lines 6676--6676 \T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w eather_variable.WeatherVariable\T1/qtm/m/it/10 , [86] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 87 undefined on input line 6735. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 87 undefined on input line 6735. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherAttributes' on page 87 undefined on inp ut line 6735. Overfull \hbox (21.75932pt too wide) in paragraph at lines 6735--6735 \T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w eather_variable.WeatherVariable\T1/qtm/m/it/10 , Overfull \hbox (21.75932pt too wide) in paragraph at lines 6735--6735 \T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w eather_variable.WeatherVariable\T1/qtm/m/it/10 , [87] Overfull \hbox (5.21489pt too wide) in paragraph at lines 6767--6770 [] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherMetadata' on page 88 undefined on input line 6810. Overfull \hbox (93.4591pt too wide) in paragraph at lines 6810--6810 \T1/qtm/m/it/10 tional[][][\T1/qtm/m/n/10 emodpy_malaria.weather.weather_metada ta.WeatherMetadata\T1/qtm/m/it/10 ] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherMetadata' on page 88 undefined on input line 1. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherAttributes' on page 88 undefined on inp ut line 6846. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala ria.weather.weather_data.WeatherData' on page 88 undefined on input line 6846. [88] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala ria.weather.weather_data.DataFrameInfo' on page 89 undefined on input line 6905 . LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherAttributes' on page 89 undefined on inp ut line 6905. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala ria.weather.weather_data.WeatherData' on page 89 undefined on input line 6905. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala ria.weather.weather_data.DataFrameInfo' on page 89 undefined on input line 6936 . LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala ria.weather.weather_data.DataFrameInfo' on page 89 undefined on input line 6962 . LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherAttributes' on page 89 undefined on inp ut line 6962. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala ria.weather.weather_data.WeatherData' on page 89 undefined on input line 6962. [89] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala ria.weather.weather_data.DataFrameInfo' on page 90 undefined on input line 6993 . LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala ria.weather.weather_data.WeatherData' on page 90 undefined on input line 7012. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala ria.weather.weather_data.DataFrameInfo' on page 90 undefined on input line 7081 . [90] [91] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherMetadata' on page 92 undefined on input line 7250. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherAttributes' on page 92 undefined on inp ut line 7250. Overfull \hbox (162.65897pt too wide) in paragraph at lines 7250--7250 \T1/qtm/m/it/10 tional[][][[][]Union[][][\T1/qtm/m/n/10 emodpy_malaria.weather. weather_metadata.WeatherMetadata\T1/qtm/m/it/10 , Overfull \hbox (109.32397pt too wide) in paragraph at lines 7250--7250 \T1/qtm/m/n/10 emodpy_malaria.weather.weather_metadata.WeatherAttributes\T1/qtm /m/it/10 , LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherAttributes' on page 92 undefined on inp ut line 7252. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherAttributes' on page 92 undefined on inp ut line 1. [92] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherMetadata' on page 93 undefined on input line 7387. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 93 undefined on input line 1. Overfull \hbox (79.22398pt too wide) in paragraph at lines 7480--7480 \T1/qtm/m/it/10 tools_platform_comps.comps_platform.COMPSPlatform[][]]\T1/qtm/m /n/10 , [93] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_request:emodpy_m alaria.weather.weather_request.RequestReport' on page 94 undefined on input lin e 1. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_request:emodpy_m alaria.weather.weather_request.WeatherArgs' on page 94 undefined on input line 7534. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_request:emodpy_m alaria.weather.weather_request.WeatherRequest' on page 94 undefined on input li ne 7534. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_request:emodpy_m alaria.weather.weather_request.WeatherRequest' on page 94 undefined on input li ne 7564. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 94 undefined on input line 7603. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 94 undefined on input line 7603. Overfull \hbox (95.25911pt too wide) in paragraph at lines 7603--7603 \T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w eather_variable.WeatherVariable\T1/qtm/m/it/10 , Overfull \hbox (95.25911pt too wide) in paragraph at lines 7603--7603 \T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w eather_variable.WeatherVariable\T1/qtm/m/it/10 , [94] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_data:emodpy_mala ria.weather.weather_data.WeatherData' on page 95 undefined on input line 7626. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 95 undefined on input line 1. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherAttributes' on page 95 undefined on inp ut line 1. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 95 undefined on input line 1. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 95 undefined on input line 1. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 95 undefined on input line 7686. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherAttributes' on page 95 undefined on inp ut line 7686. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_set:emodpy_malar ia.weather.weather_set.WeatherSet' on page 95 undefined on input line 7686. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 95 undefined on input line 7726. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_metadata:emodpy_ malaria.weather.weather_metadata.WeatherAttributes' on page 95 undefined on inp ut line 7726. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_set:emodpy_malar ia.weather.weather_set.WeatherSet' on page 95 undefined on input line 7726. [95] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 96 undefined on input line 7766. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 96 undefined on input line 7797. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 96 undefined on input line 7832. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_set:emodpy_malar ia.weather.weather_set.WeatherSet' on page 96 undefined on input line 7832. [96] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 97 undefined on input line 7862. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 97 undefined on input line 7871. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 97 undefined on input line 7871. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 97 undefined on input line 7871. Underfull \hbox (badness 10000) in paragraph at lines 7906--7910 []\T1/qtm/m/n/10 For ex-am-ple, air Underfull \hbox (badness 10000) in paragraph at lines 7906--7910 \T1/qtm/m/n/10 tem-per-a-ture could be rep-re-sented as: Weath-er-Vari-able.AIR _TEMPERATURE: LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 97 undefined on input line 7921. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 97 undefined on input line 7921. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 97 undefined on input line 7921. Overfull \hbox (23.48941pt too wide) in paragraph at lines 7921--7921 \T1/qtm/m/it/10 tional[][][[][]List[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w eather_variable.WeatherVariable\T1/qtm/m/it/10 ]] Overfull \hbox (20.51942pt too wide) in paragraph at lines 7921--7921 \T1/qtm/m/it/10 tional[][][[][]Dict[][][\T1/qtm/m/n/10 emodpy_malaria.weather.w eather_variable.WeatherVariable\T1/qtm/m/it/10 , [97] Overfull \hbox (21.12492pt too wide) in paragraph at lines 7949--7952 [] Underfull \hbox (badness 10000) in paragraph at lines 7949--7952 \T1/qtm/m/n/10 In this case low-er-case weather vari-able names are used, for e x-am-ple: [98] LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 99 undefined on input line 8158. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 99 undefined on input line 8158. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 99 undefined on input line 8158. LaTeX Warning: Hyper reference `emodpy_malaria.weather.weather_variable:emodpy_ malaria.weather.weather_variable.WeatherVariable' on page 99 undefined on input line 8177. [99] Underfull \hbox (badness 10000) in paragraph at lines 8237--8240 []\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s im-u-la-tions Malaria_Model = Underfull \hbox (badness 6510) in paragraph at lines 8251--8253 []\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u es are ^^PFIXED_NEIGHBORHOOD^^Q, [100] Underfull \hbox (badness 10000) in paragraph at lines 8401--8405 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [101] Overfull \hbox (31.99455pt too wide) in paragraph at lines 8456--8459 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 8461--8464 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 8466--8469 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 8471--8479 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 8494--8502 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 8494--8502 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [102] [103] [104] [105] [106] [107] [108] [109] Underfull \hbox (badness 10000) in paragraph at lines 9252--9256 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [110] Overfull \hbox (31.99455pt too wide) in paragraph at lines 9307--9310 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 9312--9315 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 9317--9320 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 9322--9330 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9345--9353 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9345--9353 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [111] [112] Chapter 3. LaTeX Warning: Hyper reference `faq:what-are-some-of-the-key-differences-for-pe ople-used-to-using-dtk-tools' on page 113 undefined on input line 9425. LaTeX Warning: Hyper reference `faq:do-i-need-to-install-a-whole-bunch-of-pytho n-modules-where-do-i-get-that-list' on page 113 undefined on input line 9429. LaTeX Warning: Hyper reference `faq:is-there-an-easier-way-than-typing-index-ur l-with-that-long-url-every-time-i-use-pip' on page 113 undefined on input line 9433. LaTeX Warning: Hyper reference `faq:how-do-i-find-the-path-or-file-to-my-pip-in i' on page 113 undefined on input line 9437. LaTeX Warning: Hyper reference `faq:what-if-the-pip-ini-file-or-pip-folder-does n-t-exist' on page 113 undefined on input line 9441. LaTeX Warning: Hyper reference `faq:what-s-the-text-i-need-to-enter-into-my-pip -config-file' on page 113 undefined on input line 9445. LaTeX Warning: Hyper reference `faq:i-was-installing-the-python-modules-and-it- told-me-i-needed-a-c-compiler' on page 113 undefined on input line 9449. LaTeX Warning: Hyper reference `faq:i-was-installing-and-got-prompted-for-jfrog -credentials' on page 113 undefined on input line 9453. LaTeX Warning: Hyper reference `faq:what-if-i-really-actually-do-want-to-instal l-something-from-staging' on page 113 undefined on input line 9457. LaTeX Warning: Hyper reference `faq:what-version-of-python-should-i-be-using' o n page 113 undefined on input line 9461. LaTeX Warning: Hyper reference `faq:what-if-i-want-a-particular-version-of-emod py-malaria' on page 113 undefined on input line 9465. LaTeX Warning: Hyper reference `faq:what-if-i-want-to-make-changes-to-emodpy-ma laria-and-run-with-those-instead-of-a-released-version' on page 113 undefined o n input line 9469. LaTeX Warning: Hyper reference `faq:i-pip-installed-emodpy-malaria-but-i-want-t o-make-changes-how-should-i-do-that' on page 113 undefined on input line 9473. LaTeX Warning: Hyper reference `faq:how-do-i-set-configuration-parameters' on p age 113 undefined on input line 9477. LaTeX Warning: Hyper reference `faq:how-do-i-specify-the-log-level-for-emod-s-i -get-a-schema-error-when-i-try-to-set-it-now' on page 113 undefined on input li ne 9481. LaTeX Warning: Hyper reference `faq:how-do-i-specify-the-vector-species-for-my- scenario' on page 113 undefined on input line 9485. LaTeX Warning: Hyper reference `faq:where-else-should-i-search-for-functions' o n page 113 undefined on input line 9489. LaTeX Warning: Hyper reference `faq:do-i-need-to-be-connected-to-the-vpn' on pa ge 113 undefined on input line 9493. LaTeX Warning: Hyper reference `faq:is-there-an-example-of-creating-a-demograph ics-file-from-scratch-with-the-api' on page 113 undefined on input line 9497. LaTeX Warning: Hyper reference `faq:i-see-a-lot-of-malaria-sim-examples-are-the re-any-vector-sim-examples' on page 113 undefined on input line 9501. LaTeX Warning: Hyper reference `faq:is-there-a-multi-node-or-spatial-example' o n page 113 undefined on input line 9505. LaTeX Warning: Hyper reference `faq:are-there-simple-campaign-intervention-exam ples' on page 113 undefined on input line 9509. LaTeX Warning: Hyper reference `faq:is-there-a-drug-campaign-example' on page 1 13 undefined on input line 9513. LaTeX Warning: Hyper reference `faq:is-there-a-campaign-sweep-example' on page 113 undefined on input line 9517. LaTeX Warning: Hyper reference `faq:is-there-a-demographics-sweep-example' on p age 113 undefined on input line 9521. LaTeX Warning: Hyper reference `faq:is-there-a-serialization-burn-in-example' o n page 113 undefined on input line 9525. LaTeX Warning: Hyper reference `faq:is-there-a-reporter-configuration-example' on page 113 undefined on input line 9529. [113] [114] [115] Overfull \hbox (15.08487pt too wide) in paragraph at lines 9615--9617 \T1/qtm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/@idmod.org:@packages.idmod.org/api/pypi/pypi- [116] [117] [118] [119] [120] [121] [122] LaTeX Warning: Reference `emodpy_malaria:module-emodpy_malaria' on page 123 und efined on input line 9962. LaTeX Warning: Reference `emodpy_malaria.demographics:module-emodpy_malaria.dem ographics' on page 123 undefined on input line 9963. LaTeX Warning: Reference `emodpy_malaria.demographics.MalariaDemographics:modul e-emodpy_malaria.demographics.MalariaDemographics' on page 123 undefined on inp ut line 9964. Overfull \hbox (19.37178pt too wide) in paragraph at lines 9964--9965 []\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions:module-emodpy_malaria.in terventions' on page 123 undefined on input line 9965. LaTeX Warning: Reference `emodpy_malaria.interventions.adherentdrug:module-emod py_malaria.interventions.adherentdrug' on page 123 undefined on input line 9966 . LaTeX Warning: Reference `emodpy_malaria.interventions.bednet:module-emodpy_mal aria.interventions.bednet' on page 123 undefined on input line 9967. LaTeX Warning: Reference `emodpy_malaria.interventions.common:module-emodpy_mal aria.interventions.common' on page 123 undefined on input line 9968. LaTeX Warning: Reference `emodpy_malaria.interventions.community_health_worker: module-emodpy_malaria.interventions.community_health_worker' on page 123 undefi ned on input line 9969. Overfull \hbox (45.6217pt too wide) in paragraph at lines 9969--9970 []\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m /n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions.diag_survey:module-emodp y_malaria.interventions.diag_survey' on page 123 undefined on input line 9970. LaTeX Warning: Reference `emodpy_malaria.interventions.drug:module-emodpy_malar ia.interventions.drug' on page 123 undefined on input line 9971. LaTeX Warning: Reference `emodpy_malaria.interventions.drug_campaign:module-emo dpy_malaria.interventions.drug_campaign' on page 123 undefined on input line 99 72. Underfull \hbox (badness 10000) in paragraph at lines 9972--9973 []\T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions.inputeir:module-emodpy_m alaria.interventions.inputeir' on page 123 undefined on input line 9973. LaTeX Warning: Reference `emodpy_malaria.interventions.irs:module-emodpy_malari a.interventions.irs' on page 123 undefined on input line 9974. LaTeX Warning: Reference `emodpy_malaria.interventions.ivermectin:module-emodpy _malaria.interventions.ivermectin' on page 123 undefined on input line 9975. LaTeX Warning: Reference `emodpy_malaria.interventions.larvicide:module-emodpy_ malaria.interventions.larvicide' on page 123 undefined on input line 9976. LaTeX Warning: Reference `emodpy_malaria.interventions.mosquitorelease:module-e modpy_malaria.interventions.mosquitorelease' on page 123 undefined on input lin e 9977. Overfull \hbox (3.62183pt too wide) in paragraph at lines 9977--9978 []\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions.outbreak:module-emodpy_m alaria.interventions.outbreak' on page 123 undefined on input line 9978. LaTeX Warning: Reference `emodpy_malaria.interventions.outdoorrestkill:module-e modpy_malaria.interventions.outdoorrestkill' on page 123 undefined on input lin e 9979. Overfull \hbox (3.62183pt too wide) in paragraph at lines 9979--9980 []\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions.scale_larval_habitats:mo dule-emodpy_malaria.interventions.scale_larval_habitats' on page 123 undefined on input line 9980. Overfull \hbox (35.12173pt too wide) in paragraph at lines 9980--9981 []\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n /10 , LaTeX Warning: Reference `emodpy_malaria.interventions.spacespraying:module-emo dpy_malaria.interventions.spacespraying' on page 123 undefined on input line 99 81. Underfull \hbox (badness 10000) in paragraph at lines 9981--9982 []\T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions.sugartrap:module-emodpy_ malaria.interventions.sugartrap' on page 123 undefined on input line 9982. LaTeX Warning: Reference `emodpy_malaria.interventions.treatment_seeking:module -emodpy_malaria.interventions.treatment_seeking' on page 123 undefined on input line 9983. Overfull \hbox (14.1218pt too wide) in paragraph at lines 9983--9984 []\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions.usage_dependent_bednet:m odule-emodpy_malaria.interventions.usage_dependent_bednet' on page 123 undefine d on input line 9984. Overfull \hbox (40.37172pt too wide) in paragraph at lines 9984--9985 []\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/ n/10 , LaTeX Warning: Reference `emodpy_malaria.interventions.vaccine:module-emodpy_ma laria.interventions.vaccine' on page 123 undefined on input line 9985. LaTeX Warning: Reference `emodpy_malaria.malaria_config:module-emodpy_malaria.m alaria_config' on page 123 undefined on input line 9986. LaTeX Warning: Reference `emodpy_malaria.malaria_vector_species_params:module-e modpy_malaria.malaria_vector_species_params' on page 123 undefined on input lin e 9987. Overfull \hbox (3.62183pt too wide) in paragraph at lines 9987--9988 []\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 , LaTeX Warning: Reference `emodpy_malaria.reporters:module-emodpy_malaria.report ers' on page 123 undefined on input line 9988. LaTeX Warning: Reference `emodpy_malaria.reporters.builtin:module-emodpy_malari a.reporters.builtin' on page 123 undefined on input line 9989. LaTeX Warning: Reference `emodpy_malaria.vector_config:module-emodpy_malaria.ve ctor_config' on page 123 undefined on input line 9990. LaTeX Warning: Reference `emodpy_malaria.weather:module-emodpy_malaria.weather' on page 123 undefined on input line 9991. LaTeX Warning: Reference `emodpy_malaria.weather.data_sources:module-emodpy_mal aria.weather.data_sources' on page 123 undefined on input line 9992. LaTeX Warning: Reference `emodpy_malaria.weather.weather_data:module-emodpy_mal aria.weather.weather_data' on page 123 undefined on input line 9993. LaTeX Warning: Reference `emodpy_malaria.weather.weather_metadata:module-emodpy _malaria.weather.weather_metadata' on page 123 undefined on input line 9994. LaTeX Warning: Reference `emodpy_malaria.weather.weather_request:module-emodpy_ malaria.weather.weather_request' on page 123 undefined on input line 9995. LaTeX Warning: Reference `emodpy_malaria.weather.weather_set:module-emodpy_mala ria.weather.weather_set' on page 123 undefined on input line 9996. LaTeX Warning: Reference `emodpy_malaria.weather.weather_utils:module-emodpy_ma laria.weather.weather_utils' on page 123 undefined on input line 9997. LaTeX Warning: Reference `emodpy_malaria.weather.weather_variable:module-emodpy _malaria.weather.weather_variable' on page 123 undefined on input line 9998. [123] No file institute-for-disease-modeling-emodpy-malaria.ind. (./institute-for-disease-modeling-emodpy-malaria.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-emodpy-mal aria.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r .enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (127 pages, 525919 bytes). Transcript written on institute-for-disease-modeling-emodpy-malaria.log. Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written Latexmk: Missing input file: 'institute-for-disease-modeling-emodpy-malaria.ind' from line 'No file institute-for-disease-modeling-emodpy-malaria.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: List of undefined refs and citations: Reference `emodpy_malaria.demographics.MalariaDemographics:module-emodpy_malaria.demographics.MalariaDemographics' on page 123 undefined on input line 9964 Reference `emodpy_malaria.demographics:module-emodpy_malaria.demographics' on page 123 undefined on input line 9963 Reference `emodpy_malaria.interventions.adherentdrug:module-emodpy_malaria.interventions.adherentdrug' on page 123 undefined on input line 9966 Reference `emodpy_malaria.interventions.bednet:module-emodpy_malaria.interventions.bednet' on page 123 undefined on input line 9967 Reference `emodpy_malaria.interventions.common:module-emodpy_malaria.interventions.common' on page 123 undefined on input line 9968 Reference `emodpy_malaria.interventions.community_health_worker:module-emodpy_malaria.interventions.community_health_worker' on page 123 undefined on input line 9969 Reference `emodpy_malaria.interventions.diag_survey:module-emodpy_malaria.interventions.diag_survey' on page 123 undefined on input line 9970 Reference `emodpy_malaria.interventions.drug:module-emodpy_malaria.interventions.drug' on page 123 undefined on input line 9971 Reference `emodpy_malaria.interventions.drug_campaign:module-emodpy_malaria.interventions.drug_campaign' on page 123 undefined on input line 9972 Reference `emodpy_malaria.interventions.inputeir:module-emodpy_malaria.interventions.inputeir' on page 123 undefined on input line 9973 Reference `emodpy_malaria.interventions.irs:module-emodpy_malaria.interventions.irs' on page 123 undefined on input line 9974 Reference `emodpy_malaria.interventions.ivermectin:module-emodpy_malaria.interventions.ivermectin' on page 123 undefined on input line 9975 Reference `emodpy_malaria.interventions.larvicide:module-emodpy_malaria.interventions.larvicide' on page 123 undefined on input line 9976 Reference `emodpy_malaria.interventions.mosquitorelease:module-emodpy_malaria.interventions.mosquitorelease' on page 123 undefined on input line 9977 Reference `emodpy_malaria.interventions.outbreak:module-emodpy_malaria.interventions.outbreak' on page 123 undefined on input line 9978 Reference `emodpy_malaria.interventions.outdoorrestkill:module-emodpy_malaria.interventions.outdoorrestkill' on page 123 undefined on input line 9979 Reference `emodpy_malaria.interventions.scale_larval_habitats:module-emodpy_malaria.interventions.scale_larval_habitats' on page 123 undefined on input line 9980 Reference `emodpy_malaria.interventions.spacespraying:module-emodpy_malaria.interventions.spacespraying' on page 123 undefined on input line 9981 Reference `emodpy_malaria.interventions.sugartrap:module-emodpy_malaria.interventions.sugartrap' on page 123 undefined on input line 9982 Reference `emodpy_malaria.interventions.treatment_seeking:module-emodpy_malaria.interventions.treatment_seeking' on page 123 undefined on input line 9983 Reference `emodpy_malaria.interventions.usage_dependent_bednet:module-emodpy_malaria.interventions.usage_dependent_bednet' on page 123 undefined on input line 9984 Reference `emodpy_malaria.interventions.vaccine:module-emodpy_malaria.interventions.vaccine' on page 123 undefined on input line 9985 Reference `emodpy_malaria.interventions:module-emodpy_malaria.interventions' on page 123 undefined on input line 9965 Reference `emodpy_malaria.malaria_config:module-emodpy_malaria.malaria_config' on page 123 undefined on input line 9986 Reference `emodpy_malaria.malaria_vector_species_params:module-emodpy_malaria.malaria_vector_species_params' on page 123 undefined on input line 9987 Reference `emodpy_malaria.reporters.builtin:module-emodpy_malaria.reporters.builtin' on page 123 undefined on input line 9989 Reference `emodpy_malaria.reporters:module-emodpy_malaria.reporters' on page 123 undefined on input line 9988 Reference `emodpy_malaria.vector_config:module-emodpy_malaria.vector_config' on page 123 undefined on input line 9990 Reference `emodpy_malaria.weather.data_sources:module-emodpy_malaria.weather.data_sources' on page 123 undefined on input line 9992 Reference `emodpy_malaria.weather.weather_data:module-emodpy_malaria.weather.weather_data' on page 123 undefined on input line 9993 Reference `emodpy_malaria.weather.weather_metadata:module-emodpy_malaria.weather.weather_metadata' on page 123 undefined on input line 9994 Reference `emodpy_malaria.weather.weather_request:module-emodpy_malaria.weather.weather_request' on page 123 undefined on input line 9995 Reference `emodpy_malaria.weather.weather_set:module-emodpy_malaria.weather.weather_set' on page 123 undefined on input line 9996 Reference `emodpy_malaria.weather.weather_utils:module-emodpy_malaria.weather.weather_utils' on page 123 undefined on input line 9997 Reference `emodpy_malaria.weather.weather_variable:module-emodpy_malaria.weather.weather_variable' on page 123 undefined on input line 9998 Reference `emodpy_malaria.weather:module-emodpy_malaria.weather' on page 123 undefined on input line 9991 Reference `emodpy_malaria:module-emodpy_malaria' on page 123 undefined on input line 9962 Latexmk: Summary of warnings: Latex failed to resolve 37 reference(s) Rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx': File changes, etc: Non-existent destination files: 'institute-for-disease-modeling-emodpy-malaria.ind' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-emodpy-malaria.ind" "institute-for-disease-modeling-emodpy-malaria.idx"' ------------ Latexmk: applying rule 'makeindex institute-for-disease-modeling-emodpy-malaria.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-emodpy-malaria.idx....done (356 entries accepted, 0 rejected). Sorting entries......done (3157 comparisons). Generating output file institute-for-disease-modeling-emodpy-malaria.ind....done (740 lines written, 0 warnings). Output written in institute-for-disease-modeling-emodpy-malaria.ind. Transcript written in institute-for-disease-modeling-emodpy-malaria.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emodpy-malaria.aux' 'institute-for-disease-modeling-emodpy-malaria.ind' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emodpy-malaria" "emodpy-malaria-docs.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emodpy-malaria-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file institute-for-disease-modeling-emodpy-malaria.idx (./institute-for-disease-modeling-emodpy-malaria.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./institute-for-disease-modeling-emodpy-malaria.out) (./institute-for-disease-modeling-emodpy-malaria.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-emodpy-malaria.toc) [1] [2] [1] [2] Chapter 1. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4] Chapter 2. Overfull \hbox (57.31381pt too wide) in paragraph at lines 258--258 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| Underfull \hbox (badness 5274) in paragraph at lines 305--308 []\T1/qtm/m/n/10 Set ini-tial risk for low-medium trans-mis-sion set-tings per: [][]$https : / / wiki . idmod . org / display / MAL / [5] Overfull \hbox (20.56392pt too wide) in paragraph at lines 413--413 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| [6] Overfull \hbox (35.49402pt too wide) in paragraph at lines 457--457 \T1/qtm/m/it/10 pop_filename_out=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 spatial_grid ded_pop_dir\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 733--736 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 743--747 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 743--747 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [10] Underfull \hbox (badness 10000) in paragraph at lines 878--881 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [11] Underfull \hbox (badness 10000) in paragraph at lines 888--892 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 888--892 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [12] Overfull \hbox (27.94388pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (8.55386pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (4.09389pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 out_on_first_occurrence: [13] Underfull \hbox (badness 10000) in paragraph at lines 1026--1029 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1036--1039 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [14] Underfull \hbox (badness 10000) in paragraph at lines 1118--1121 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1128--1131 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (31.3137pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (29.93373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (61.05371pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (9.43373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (11.09373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (2.46371pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 get_gender: Overfull \hbox (6.86372pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 tial_amount: Overfull \hbox (42.41373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 amount_in_shipment: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (59.27374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 days_between_shipments: Overfull \hbox (11.68375pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 3.40282e+38\T1/qtm/m/n/10 , Overfull \hbox (3.82375pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 tion_config: Overfull \hbox (1.05374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 tional[][][any] Overfull \hbox (60.84373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 max_distributed_per_day: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (0.53372pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 max_stock: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (2.71375pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 ing_period: [15] Overfull \vbox (11.56755pt too high) has occurred while \output is active [16] Underfull \hbox (badness 10000) in paragraph at lines 1203--1206 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [17] Underfull \hbox (badness 10000) in paragraph at lines 1315--1320 []\T1/txtt/bx/n/10 diagnostic_type \T1/qtm/m/n/10 ^^U Type of malaria di-ag-nos -tic used. De-fault is [18] Underfull \hbox (badness 10000) in paragraph at lines 1371--1375 []\T1/qtm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1399--1402 []\T1/txtt/bx/n/10 measurement_sensitivity \T1/qtm/m/n/10 ^^U Set-ting for \T1/ qtm/b/n/10 Mea-sure-ment_Sensitivity \T1/qtm/m/n/10 in Underfull \hbox (badness 10000) in paragraph at lines 1428--1434 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v id-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1428--1434 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 1428--1434 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1436--1441 []\T1/txtt/bx/n/10 disqualifying_properties \T1/qtm/m/n/10 ^^U List of In-di-vi d-u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1436--1441 \T1/qtm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For Underfull \hbox (badness 10000) in paragraph at lines 1436--1441 \T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu e1"}, [19] Underfull \hbox (badness 10000) in paragraph at lines 1464--1468 []\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 [{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop- Overfull \hbox (1.69395pt too wide) in paragraph at lines 1485--1485 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1516--1519 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [20] Underfull \hbox (badness 10000) in paragraph at lines 1526--1529 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [21] Overfull \hbox (72.89397pt too wide) in paragraph at lines 1650--1650 \T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received _Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [22] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [23] Overfull \hbox (25.23418pt too wide) in paragraph at lines 1879--1879 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (54.63417pt too wide) in paragraph at lines 1879--1879 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1896--1896 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1896--1896 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [24] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1913--1913 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1913--1913 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Underfull \hbox (badness 10000) in paragraph at lines 1914--1918 []\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter- ven-tion to your cam-paign. See Overfull \hbox (40.98413pt too wide) in paragraph at lines 1930--1930 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (70.38412pt too wide) in paragraph at lines 1930--1930 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [25] Overfull \hbox (35.73415pt too wide) in paragraph at lines 1947--1947 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (65.13414pt too wide) in paragraph at lines 1947--1947 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [26] [27] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2104--2104 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2104--2104 \T1/qtm/m/it/10 pelling_decay_time_constant: [28] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2183--2183 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2183--2183 \T1/qtm/m/it/10 pelling_decay_time_constant: [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2389--2392 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2399--2402 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2502--2505 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [34] Underfull \hbox (badness 10000) in paragraph at lines 2592--2595 []\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^ PTEM-PO-RARY_RAINFALL^^Q, ^^PWA- Underfull \hbox (badness 10000) in paragraph at lines 2592--2595 \T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- Overfull \hbox (54.1938pt too wide) in paragraph at lines 2644--2644 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (1.7138pt too wide) in paragraph at lines 2644--2644 \T1/qtm/m/it/10 leased_infectious: Overfull \hbox (19.54382pt too wide) in paragraph at lines 2644--2644 \T1/qtm/m/it/10 leased_microsopridia: [35] Underfull \hbox (badness 10000) in paragraph at lines 2665--2668 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 7576) in paragraph at lines 2681--2683 []\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t o re-lease, sets Re-leased_Type = [36] Underfull \hbox (badness 10000) in paragraph at lines 2692--2695 []\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec- tors re-leased that Underfull \hbox (badness 10000) in paragraph at lines 2692--2695 \T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.29498pt too wide) in paragraph at lines 2692--2695 \T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' [37] Underfull \hbox (badness 10000) in paragraph at lines 2787--2790 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2797--2800 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (12.19392pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (14.34396pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (79.13393pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (118.29388pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Overfull \hbox (74.29391pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 hrp_allele_frequencies_per_genome_location: [38] Underfull \hbox (badness 10000) in paragraph at lines 2883--2886 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [39] Underfull \hbox (badness 10000) in paragraph at lines 2893--2896 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 2934--2940 []\T1/txtt/bx/n/10 drug_resistant_string \T1/qtm/m/n/10 ^^U Used with `BAR-CODE _STRING' or `NU- Underfull \hbox (badness 10000) in paragraph at lines 2955--2961 []\T1/txtt/bx/n/10 barcode_allele_frequencies_per_genome_location \T1/qtm/m/n/1 0 ^^U Used with `AL- [40] Underfull \hbox (badness 10000) in paragraph at lines 2971--2976 []\T1/txtt/bx/n/10 hrp_allele_frequencies_per_genome_location \T1/qtm/m/n/10 ^^ U Used with `AL- Overfull \hbox (17.44391pt too wide) in paragraph at lines 2997--2997 \T1/qtm/m/it/10 timesteps_between_repetitions: [41] Underfull \hbox (badness 10000) in paragraph at lines 3030--3033 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3040--3043 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [42] Underfull \hbox (badness 10000) in paragraph at lines 3128--3131 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3138--3141 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [43] Overfull \hbox (59.44379pt too wide) in paragraph at lines 3228--3228 \T1/qtm/m/it/10 timesteps_between_repetitions: [44] Overfull \hbox (69.94376pt too wide) in paragraph at lines 3305--3305 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 3339--3342 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [45] Overfull \hbox (33.19386pt too wide) in paragraph at lines 3364--3364 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (26.16386pt too wide) in paragraph at lines 3364--3364 \T1/qtm/m/it/10 killing_decay_time_constant: Underfull \hbox (badness 10000) in paragraph at lines 3380--3383 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [46] Underfull \hbox (badness 10000) in paragraph at lines 3498--3501 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [47] [48] Overfull \hbox (5.13391pt too wide) in paragraph at lines 3600--3600 \T1/qtm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 3620--3625 []\T1/txtt/bx/n/10 is \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 properties of individual s to target with the intervention. Underfull \hbox (badness 6094) in paragraph at lines 3620--3625 \T1/txtt/m/sl/10 Default\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 [{ "trigger":"NewC linicalCase","coverage":0.8,"agemin":15, Underfull \hbox (badness 10000) in paragraph at lines 3620--3625 \T1/txtt/m/n/10 "agemax":70, "seek":0.4,"rate":0.3},{"trigger":"NewSevereCase", Underfull \hbox (badness 10000) in paragraph at lines 3643--3645 []\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h ave to receive the Underfull \hbox (badness 10000) in paragraph at lines 3643--3645 \T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi dualProperty1:PropertyValue1", [49] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3679--3679 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tar- Overfull \hbox (84.11362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 get_num_individuals: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (39.17361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]int[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3679--3679 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3679--3679 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [50] Overfull \vbox (839.56755pt too high) has occurred while \output is active [51] Underfull \hbox (badness 6188) in paragraph at lines 3684--3689 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3719--3722 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [52] [53] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3882--3882 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 trig- Overfull \hbox (73.31358pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 trig- Overfull \hbox (93.44359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 gered_campaign_delay: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (46.39362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]float[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (10.27362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 lis- Overfull \hbox (12.89363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ten- Overfull \hbox (52.80362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (0.82362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 - Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3882--3882 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3882--3882 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [54] Overfull \vbox (979.56999pt too high) has occurred while \output is active [55] Underfull \hbox (badness 6188) in paragraph at lines 3887--3893 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3918--3921 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [56] [57] Overfull \hbox (88.19377pt too wide) in paragraph at lines 4095--4095 \T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [58] Underfull \hbox (badness 10000) in paragraph at lines 4139--4142 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4149--4152 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [59] Underfull \hbox (badness 10000) in paragraph at lines 4252--4255 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4262--4265 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [60] [61] Overfull \hbox (31.91403pt too wide) in paragraph at lines 4411--4411 \T1/qtm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 5119) in paragraph at lines 4461--4468 \T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_ GENOME^^Q spe- [62] [63] [64] [65] Overfull \hbox (2.92401pt too wide) in paragraph at lines 4785--4785 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [66] Overfull \hbox (6.20389pt too wide) in paragraph at lines 4858--4858 \T1/qtm/m/it/10 must_have_ip_key_value: Overfull \hbox (1.87387pt too wide) in paragraph at lines 4858--4858 \T1/qtm/m/it/10 must_have_intervention: Overfull \hbox (55.41386pt too wide) in paragraph at lines 4858--4858 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [67] Underfull \hbox (badness 5119) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T emperature^^Q, ^^PBirths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [68] [69] [70] [71] [72] Overfull \hbox (4.70392pt too wide) in paragraph at lines 5504--5504 \T1/qtm/m/it/10 ify_by_clinical_symptoms: [73] Overfull \hbox (38.49373pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 drug_resistant_strings: Overfull \hbox (102.98372pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 drug_resistant_and_hrp_statistic_type: Overfull \hbox (156.42372pt too wide) in paragraph at lines 5550--5550 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m /it/10 '\T1/qtm/m/n/10 , Overfull \hbox (18.46376pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 ip_key_to_collect: Overfull \hbox (4.78375pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 ify_by_gender: Overfull \hbox (37.74379pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 clude_identity_by_xxx: [74] Overfull \hbox (5.15385pt too wide) in paragraph at lines 5656--5656 \T1/qtm/m/it/10 clude_microsporidia: [75] [76] Underfull \hbox (badness 7308) in paragraph at lines 5726--5728 []\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or ex-clude, de-pend-ing on value of [77] Underfull \hbox (badness 10000) in paragraph at lines 5907--5910 \T1/qtm/m/n/10 im-plies one should get data on days Start_Day, Start_Day+Sampli ng_Period, [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6054--6060 []\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma lar-i-a-Trans-mis-sion.csv) is a csv re- Underfull \hbox (badness 6592) in paragraph at lines 6054--6060 \T1/qtm/m/n/10 port that pro-vides data on malaria trans-mis-sion, by track-ing who trans-mit-ted malaria to whom. Underfull \hbox (badness 10000) in paragraph at lines 6054--6060 \T1/qtm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/qtm/b/n/10 Malaria_Model \T1/qtm/m/n/10 is set to Underfull \hbox (badness 5388) in paragraph at lines 6054--6060 \T1/qtm/m/n/10 MALARIA_MECHANISTIC_MODEL_WITH_CO_TRANSMISSION. This re-port is typ-i-cally used as [80] [81] [82] Overfull \hbox (3.4238pt too wide) in paragraph at lines 6418--6418 \T1/qtm/m/it/10 ing.Optional[str] [83] [84] [85] Overfull \hbox (21.45433pt too wide) in paragraph at lines 6676--6676 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (11.94434pt too wide) in paragraph at lines 6676--6676 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me tadata.WeatherAttributes[][]\T1/qtm/m/it/10 ] Overfull \hbox (21.45433pt too wide) in paragraph at lines 6676--6676 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [86] Overfull \hbox (21.45433pt too wide) in paragraph at lines 6735--6735 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (21.45433pt too wide) in paragraph at lines 6735--6735 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [87] Overfull \hbox (5.21489pt too wide) in paragraph at lines 6767--6770 [] Overfull \hbox (93.15411pt too wide) in paragraph at lines 6810--6810 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me tadata.WeatherMetadata[][]\T1/qtm/m/it/10 ] [88] [89] [90] [91] Overfull \hbox (162.35397pt too wide) in paragraph at lines 7250--7250 \T1/qtm/m/it/10 tional[][][[][]Union[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weat her.weather_metadata.WeatherMetadata[][]\T1/qtm/m/it/10 , Overfull \hbox (109.32397pt too wide) in paragraph at lines 7250--7250 [][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_metadata.WeatherAttributes[][ ]\T1/qtm/m/it/10 , [92] Overfull \hbox (79.22398pt too wide) in paragraph at lines 7480--7480 \T1/qtm/m/it/10 tools_platform_comps.comps_platform.COMPSPlatform[][]]\T1/qtm/m /n/10 , [93] Overfull \hbox (94.95412pt too wide) in paragraph at lines 7603--7603 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (94.95412pt too wide) in paragraph at lines 7603--7603 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [94] [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 7906--7910 []\T1/qtm/m/n/10 For ex-am-ple, air Underfull \hbox (badness 10000) in paragraph at lines 7906--7910 \T1/qtm/m/n/10 tem-per-a-ture could be rep-re-sented as: Weath-er-Vari-able.AIR _TEMPERATURE: Overfull \hbox (23.18442pt too wide) in paragraph at lines 7921--7921 \T1/qtm/m/it/10 tional[][][[][]List[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 ]] Overfull \hbox (20.21443pt too wide) in paragraph at lines 7921--7921 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [97] Overfull \hbox (21.12492pt too wide) in paragraph at lines 7949--7952 [] Underfull \hbox (badness 10000) in paragraph at lines 7949--7952 \T1/qtm/m/n/10 In this case low-er-case weather vari-able names are used, for e x-am-ple: [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8237--8240 []\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s im-u-la-tions Malaria_Model = Underfull \hbox (badness 6510) in paragraph at lines 8251--8253 []\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u es are ^^PFIXED_NEIGHBORHOOD^^Q, [100] Underfull \hbox (badness 10000) in paragraph at lines 8401--8405 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [101] Overfull \hbox (31.99455pt too wide) in paragraph at lines 8456--8459 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 8461--8464 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 8466--8469 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 8471--8479 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 8494--8502 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 8494--8502 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [102] [103] [104] [105] [106] [107] [108] [109] Underfull \hbox (badness 10000) in paragraph at lines 9252--9256 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [110] Overfull \hbox (31.99455pt too wide) in paragraph at lines 9307--9310 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 9312--9315 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 9317--9320 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 9322--9330 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9345--9353 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9345--9353 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [111] [112] Chapter 3. [113] [114] [115] Overfull \hbox (15.08487pt too wide) in paragraph at lines 9615--9617 \T1/qtm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/@idmod.org:@packages.idmod.org/api/pypi/pypi- [116] [117] [118] [119] [120] [121] [122] Overfull \hbox (19.37178pt too wide) in paragraph at lines 9964--9965 []\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 , Overfull \hbox (45.6217pt too wide) in paragraph at lines 9969--9970 []\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m /n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9972--9973 []\T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 9977--9978 []\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 9979--9980 []\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 9980--9981 []\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 9981--9982 []\T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 , Overfull \hbox (14.1218pt too wide) in paragraph at lines 9983--9984 []\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 , Overfull \hbox (40.37172pt too wide) in paragraph at lines 9984--9985 []\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/ n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 9987--9988 []\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 , [123] (./institute-for-disease-modeling-emodpy-malaria.ind [124] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 8--10 \T1/qtm/m/it/10 emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 10--12 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/txtt/m/n/10 add_community_health_worker() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.96248pt too wide) in paragraph at lines 12--14 \T1/qtm/m/it/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m/n /10 ), Underfull \hbox (badness 10000) in paragraph at lines 14--16 []\T1/txtt/m/n/10 add_diagnostic_survey() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 14--16 \T1/qtm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/txtt/m/n/10 add_drug_campaign() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (4.22249pt too wide) in paragraph at lines 16--18 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/txtt/m/n/10 add_drug_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/txtt/m/n/10 add_drug_status_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/txtt/m/n/10 add_event_recorder() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/txtt/m/n/10 add_fMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 24--26 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/txtt/m/n/10 add_genes_and_alleles() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/txtt/m/n/10 add_habitat_reduction_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 28--30 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/txtt/m/n/10 add_human_migration_tracking() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 add_initial_vectors_per_species() Overfull \hbox (127.35252pt too wide) in paragraph at lines 32--34 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 add_initial_vectors_per_species_from_csv() Overfull \hbox (127.35252pt too wide) in paragraph at lines 34--36 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/txtt/m/n/10 add_itn_scheduled() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 add_itn_triggered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 add_larval_habitat_multiplier() Overfull \hbox (127.35252pt too wide) in paragraph at lines 44--46 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/txtt/m/n/10 add_larvicide() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 \T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/txtt/m/n/10 add_malaria_immunity_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/txtt/m/n/10 add_malaria_patient_json_report() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/txtt/m/n/10 add_malaria_summary_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/txtt/m/n/10 add_malaria_survey_analyzer() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/txtt/m/n/10 add_MDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 58--60 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 60--62 []\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/txtt/m/n/10 add_MSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 64--66 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/txtt/m/n/10 add_mutation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/txtt/m/n/10 add_outbreak_individual() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/txtt/m/n/10 add_outbreak_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/ 10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/txtt/m/n/10 add_outbreak_malaria_var_genes() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 74--76 []\T1/txtt/m/n/10 add_outdoorrestkill() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/txtt/m/n/10 add_report_event_counter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [125] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/txtt/m/n/10 add_report_fpg_output() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/txtt/m/n/10 add_report_intervention_pop_avg() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/txtt/m/n/10 add_report_malaria_filtered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/txtt/m/n/10 add_report_malaria_filtered_intrahost() \T1/qtm/m/n/10 (\T1/q tm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 88--90 []\T1/txtt/m/n/10 add_report_node_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 90--92 []\T1/txtt/m/n/10 add_report_node_demographics_malaria() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (16.87178pt too wide) in paragraph at lines 92--94 []\T1/txtt/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 94--96 []\T1/txtt/m/n/10 add_report_vector_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 96--98 []\T1/txtt/m/n/10 add_report_vector_migration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 98--100 []\T1/txtt/m/n/10 add_report_vector_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/txtt/m/n/10 add_rfMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 102--104 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 add_rfMSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 104--106 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 add_scale_larval_habitats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 106--108 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/txtt/m/n/10 add_scheduled_antimalarial_drug() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/txtt/m/n/10 add_scheduled_input_eir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 110--112 \T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 add_scheduled_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 114--116 []\T1/txtt/m/n/10 add_scheduled_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 114--116 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 116--118 []\T1/txtt/m/n/10 add_scheduled_mosquito_release() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (5.84247pt too wide) in paragraph at lines 116--118 \T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 add_scheduled_space_spraying() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 118--120 \T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 add_scheduled_sugar_trap() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 120--122 \T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 add_scheduled_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 122--124 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/txtt/m/n/10 add_scheduled_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 132--134 []\T1/txtt/m/n/10 add_species_drivers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/txtt/m/n/10 add_sql_report_malaria() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/txtt/m/n/10 add_sql_report_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 138--139 []\T1/txtt/m/n/10 add_trait() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 139--141 []\T1/txtt/m/n/10 add_treatment_seeking() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (13.81248pt too wide) in paragraph at lines 139--141 \T1/qtm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 141--143 \T1/qtm/m/it/10 ule emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 143--145 []\T1/txtt/m/n/10 add_triggered_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 145--147 []\T1/txtt/m/n/10 add_triggered_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 145--147 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 147--149 []\T1/txtt/m/n/10 add_triggered_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 147--149 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 149--151 []\T1/txtt/m/n/10 add_triggered_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 149--151 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 151--153 []\T1/txtt/m/n/10 add_vector_habitat_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 153--155 []\T1/txtt/m/n/10 adherent_drug() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 153--155 \T1/qtm/m/it/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 ), Overfull \hbox (97.69139pt too wide) in paragraph at lines 155--157 []\T1/txtt/m/n/10 AIR_TEMPERATURE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_variable.WeatherVariable Underfull \hbox (badness 10000) in paragraph at lines 157--159 []\T1/txtt/m/n/10 all_vectors_if_none() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (79.26231pt too wide) in paragraph at lines 159--161 []\T1/txtt/m/n/10 attributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherMetadata Overfull \hbox (27.04231pt too wide) in paragraph at lines 161--163 []\T1/txtt/m/n/10 attributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Overfull \hbox (106.63223pt too wide) in paragraph at lines 163--165 []\T1/txtt/m/n/10 attributes_dict \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_metadata.WeatherAttributes Overfull \hbox (59.38237pt too wide) in paragraph at lines 165--167 []\T1/txtt/m/n/10 author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_metadata.WeatherAttributes [126] Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/txtt/m/n/10 check_vectors() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (52.95236pt too wide) in paragraph at lines 172--174 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaImmunityReport Overfull \hbox (66.65236pt too wide) in paragraph at lines 174--176 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaPatientJSONReport Overfull \hbox (53.25237pt too wide) in paragraph at lines 176--178 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSummaryReport Overfull \hbox (73.90236pt too wide) in paragraph at lines 178--180 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (27.91235pt too wide) in paragraph at lines 180--182 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportDrugStatus Overfull \hbox (37.50235pt too wide) in paragraph at lines 182--184 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportEventCounter Overfull \hbox (123.31236pt too wide) in paragraph at lines 184--186 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportFpgOutputForObservationalModel Overfull \hbox (86.26233pt too wide) in paragraph at lines 186--188 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportHumanMigrationTracking Overfull \hbox (69.73235pt too wide) in paragraph at lines 188--190 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportInfectionStatsMalaria Overfull \hbox (61.24232pt too wide) in paragraph at lines 190--192 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportInterventionPopAvg Overfull \hbox (46.60233pt too wide) in paragraph at lines 192--194 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportMalariaFiltered Overfull \hbox (85.14232pt too wide) in paragraph at lines 194--196 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportMalariaFilteredIntraHost Overfull \hbox (61.69237pt too wide) in paragraph at lines 196--198 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportNodeDemographics Overfull \hbox (94.47237pt too wide) in paragraph at lines 198--200 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportNodeDemographicsMalaria Overfull \hbox (129.31238pt too wide) in paragraph at lines 200--202 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (95.20233pt too wide) in paragraph at lines 202--204 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportSimpleMalariaTransmission Overfull \hbox (43.05237pt too wide) in paragraph at lines 204--206 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorGenetics Overfull \hbox (48.32236pt too wide) in paragraph at lines 206--208 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorMigration Overfull \hbox (27.51236pt too wide) in paragraph at lines 208--210 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorStats Overfull \hbox (95.13237pt too wide) in paragraph at lines 210--212 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorStatsMalariaGenetics Overfull \hbox (74.94232pt too wide) in paragraph at lines 212--214 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.SpatialReportMalariaFiltered Overfull \hbox (27.96236pt too wide) in paragraph at lines 214--216 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.SqlReportMalaria Overfull \hbox (62.80237pt too wide) in paragraph at lines 216--218 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.SqlReportMalariaGenetics Overfull \hbox (38.77235pt too wide) in paragraph at lines 218--220 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.VectorHabitatReport Underfull \hbox (badness 10000) in paragraph at lines 220--222 []\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 222--224 []\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 224--225 []\T1/txtt/m/n/10 csv_to_weather() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (10.29239pt too wide) in paragraph at lines 228--230 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w eather_data.WeatherData Overfull \hbox (48.51231pt too wide) in paragraph at lines 230--232 []\T1/txtt/m/n/10 data_id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weathe r.weather_request.WeatherRequest Overfull \hbox (80.38231pt too wide) in paragraph at lines 232--234 []\T1/txtt/m/n/10 data_years \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherAttributes Underfull \hbox (badness 10000) in paragraph at lines 234--236 []\T1/txtt/m/n/10 DataFrameInfo \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 234--236 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_data\T1/qtm/m/n/10 ), Overfull \hbox (34.68227pt too wide) in paragraph at lines 236--238 []\T1/txtt/m/n/10 DataSource \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emodpy_ma laria.weather.weather_request\T1/qtm/m/n/10 ), Overfull \hbox (105.51224pt too wide) in paragraph at lines 238--240 []\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_metadata.WeatherMetadata Overfull \hbox (90.88228pt too wide) in paragraph at lines 240--242 []\T1/txtt/m/n/10 date_created \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherAttributes Overfull \hbox (81.83218pt too wide) in paragraph at lines 242--244 []\T1/txtt/m/n/10 detect_columns() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_data.DataFrameInfo Overfull \hbox (16.54234pt too wide) in paragraph at lines 244--246 []\T1/txtt/m/n/10 dir_path \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_set.WeatherSet Overfull \hbox (47.7523pt too wide) in paragraph at lines 246--248 []\T1/txtt/m/n/10 download \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_request.RequestReport Overfull \hbox (64.26227pt too wide) in paragraph at lines 248--250 []\T1/txtt/m/n/10 download() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_request.WeatherRequest Underfull \hbox (badness 10000) in paragraph at lines 250--252 []\T1/txtt/m/n/10 drug_configs_from_code() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 250--252 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Overfull \hbox (16.87178pt too wide) in paragraph at lines 259--260 []\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics Overfull \hbox (43.1217pt too wide) in paragraph at lines 269--270 []\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker [127] Overfull \hbox (1.12183pt too wide) in paragraph at lines 285--286 []\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease Overfull \hbox (1.12183pt too wide) in paragraph at lines 289--290 []\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill Overfull \hbox (32.62173pt too wide) in paragraph at lines 291--292 []\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats Overfull \hbox (11.6218pt too wide) in paragraph at lines 297--298 []\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking Overfull \hbox (37.87172pt too wide) in paragraph at lines 299--300 []\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet Overfull \hbox (1.12183pt too wide) in paragraph at lines 305--306 []\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params Overfull \hbox (27.04231pt too wide) in paragraph at lines 332--334 []\T1/txtt/m/n/10 file_names \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Overfull \hbox (52.54227pt too wide) in paragraph at lines 334--336 []\T1/txtt/m/n/10 file_prefix \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_request.DataSource Overfull \hbox (38.01234pt too wide) in paragraph at lines 336--338 []\T1/txtt/m/n/10 files \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather. weather_request.WeatherRequest Overfull \hbox (69.51225pt too wide) in paragraph at lines 338--340 []\T1/txtt/m/n/10 files_exist \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_request.WeatherRequest Underfull \hbox (badness 10000) in paragraph at lines 340--342 []\T1/txtt/m/n/10 fmda_cfg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 340--342 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 342--344 []\T1/txtt/m/n/10 format_create_date() Overfull \hbox (66.21246pt too wide) in paragraph at lines 342--344 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather Attributes Overfull \hbox (41.7923pt too wide) in paragraph at lines 344--346 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_data.WeatherData Overfull \hbox (27.04231pt too wide) in paragraph at lines 346--348 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 348--350 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.1975pt too wide) in paragraph at lines 348--350 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Overfull \hbox (73.2922pt too wide) in paragraph at lines 350--352 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_data.WeatherData Overfull \hbox (58.54222pt too wide) in paragraph at lines 352--354 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_set.WeatherSet Overfull \hbox (47.04228pt too wide) in paragraph at lines 354--356 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.WeatherData Overfull \hbox (47.04228pt too wide) in paragraph at lines 356--358 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.WeatherData Overfull \hbox (84.5123pt too wide) in paragraph at lines 358--360 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_metadata.WeatherMetadata Overfull \hbox (37.54228pt too wide) in paragraph at lines 360--362 []\T1/txtt/m/n/10 from_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 362--364 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.1975pt too wide) in paragraph at lines 362--364 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 364--366 []\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.1975pt too wide) in paragraph at lines 364--366 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Overfull \hbox (36.1975pt too wide) in paragraph at lines 366--368 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Overfull \hbox (64.26227pt too wide) in paragraph at lines 371--373 []\T1/txtt/m/n/10 generate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_request.WeatherRequest Underfull \hbox (badness 10000) in paragraph at lines 373--374 []\T1/txtt/m/n/10 generate_weather() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 374--376 []\T1/txtt/m/n/10 get_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 376--378 []\T1/txtt/m/n/10 get_file_from_http() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le [128] Underfull \hbox (badness 10000) in paragraph at lines 378--380 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 380--382 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 385--387 []\T1/txtt/m/n/10 hash_series() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 385--387 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Overfull \hbox (90.88228pt too wide) in paragraph at lines 390--392 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherAttributes Underfull \hbox (badness 10000) in paragraph at lines 392--394 []\T1/txtt/m/n/10 invert_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 392--394 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 394--396 []\T1/txtt/m/n/10 irs_configuration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (11.29236pt too wide) in paragraph at lines 396--398 []\T1/txtt/m/n/10 items() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weathe r.weather_set.WeatherSet Overfull \hbox (6.04237pt too wide) in paragraph at lines 401--403 []\T1/txtt/m/n/10 keys() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_set.WeatherSet Overfull \hbox (102.94138pt too wide) in paragraph at lines 406--408 []\T1/txtt/m/n/10 LAND_TEMPERATURE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_variable.WeatherVariable Overfull \hbox (50.44235pt too wide) in paragraph at lines 408--410 []\T1/txtt/m/n/10 list() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_variable.WeatherVariable Overfull \hbox (59.01228pt too wide) in paragraph at lines 410--412 []\T1/txtt/m/n/10 local_dir \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat her.weather_request.WeatherRequest Overfull \hbox (63.7922pt too wide) in paragraph at lines 415--417 []\T1/txtt/m/n/10 make_file_paths() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 417--419 []\T1/txtt/m/n/10 make_path() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 417--419 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 419--421 []\T1/txtt/m/n/10 MalariaDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (36.1975pt too wide) in paragraph at lines 419--421 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 421--423 []\T1/txtt/m/n/10 MalariaImmunityReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 423--425 []\T1/txtt/m/n/10 MalariaPatientJSONReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas s in Underfull \hbox (badness 10000) in paragraph at lines 425--427 []\T1/txtt/m/n/10 MalariaSummaryReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 427--429 []\T1/txtt/m/n/10 MalariaSurveyJSONAnalyzer \T1/qtm/m/n/10 (\T1/qtm/m/it/10 cla ss in Overfull \hbox (31.29233pt too wide) in paragraph at lines 429--431 []\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_data.WeatherData Underfull \hbox (badness 10000) in paragraph at lines 431--433 []\T1/txtt/m/n/10 metadata_defaults_dict() Overfull \hbox (66.21246pt too wide) in paragraph at lines 431--433 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather Attributes Overfull \hbox (39.37178pt too wide) in paragraph at lines 436--437 []| \T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/ 10 , Overfull \hbox (7.87187pt too wide) in paragraph at lines 438--439 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 , Overfull \hbox (65.6217pt too wide) in paragraph at lines 441--442 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm /m/n/10 , Overfull \hbox (2.62189pt too wide) in paragraph at lines 442--443 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 444--445 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 447--448 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 448--449 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 449--450 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 451--452 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 , Overfull \hbox (55.12173pt too wide) in paragraph at lines 452--453 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m /n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 453--454 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 454--455 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 , Overfull \hbox (34.1218pt too wide) in paragraph at lines 455--456 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/1 0 , Overfull \hbox (60.37172pt too wide) in paragraph at lines 456--457 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/ m/n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 459--460 []| \T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 466--467 []| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 467--468 []| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_request\T1/qtm/m/n/10 , [129] Underfull \hbox (badness 10000) in paragraph at lines 470--471 []| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_variable\T1/qtm/m/n/10 , Overfull \hbox (15.79237pt too wide) in paragraph at lines 474--476 []\T1/txtt/m/n/10 name \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w eather_request.DataSource Underfull \hbox (badness 10000) in paragraph at lines 476--478 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 478--480 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 480--482 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 480--482 \T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 482--484 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 484--486 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 484--486 \T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 486--488 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (5.84247pt too wide) in paragraph at lines 486--488 \T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 488--490 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 488--490 \T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 490--492 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 490--492 \T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 492--494 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (41.7425pt too wide) in paragraph at lines 492--494 \T1/qtm/m/it/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 494--496 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 494--496 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Overfull \hbox (55.58226pt too wide) in paragraph at lines 496--498 []\T1/txtt/m/n/10 node_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.DataFrameInfo Overfull \hbox (79.26231pt too wide) in paragraph at lines 498--500 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherMetadata Overfull \hbox (105.51224pt too wide) in paragraph at lines 500--502 []\T1/txtt/m/n/10 node_offset_str \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_metadata.WeatherMetadata Overfull \hbox (89.76228pt too wide) in paragraph at lines 502--504 []\T1/txtt/m/n/10 node_offsets \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherMetadata Overfull \hbox (53.01239pt too wide) in paragraph at lines 504--506 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather. weather_metadata.WeatherMetadata Overfull \hbox (89.76228pt too wide) in paragraph at lines 509--511 []\T1/txtt/m/n/10 offset_nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherMetadata Overfull \hbox (63.45233pt too wide) in paragraph at lines 514--516 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaImmunityReport Overfull \hbox (77.15233pt too wide) in paragraph at lines 516--518 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaPatientJSONReport Overfull \hbox (63.75233pt too wide) in paragraph at lines 518--520 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaSummaryReport Overfull \hbox (84.40233pt too wide) in paragraph at lines 520--522 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (38.41232pt too wide) in paragraph at lines 522--524 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportDrugStatus Overfull \hbox (48.00232pt too wide) in paragraph at lines 524--526 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportEventCounter Overfull \hbox (133.81233pt too wide) in paragraph at lines 526--528 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportFpgOutputForObservationalModel Overfull \hbox (96.7623pt too wide) in paragraph at lines 528--530 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportHumanMigrationTracking Overfull \hbox (80.23232pt too wide) in paragraph at lines 530--532 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportInfectionStatsMalaria Overfull \hbox (71.7423pt too wide) in paragraph at lines 532--534 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportInterventionPopAvg Overfull \hbox (57.1023pt too wide) in paragraph at lines 534--536 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportMalariaFiltered Overfull \hbox (95.64229pt too wide) in paragraph at lines 536--538 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportMalariaFilteredIntraHost Overfull \hbox (72.19234pt too wide) in paragraph at lines 538--540 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographics Overfull \hbox (104.97234pt too wide) in paragraph at lines 540--542 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographicsMalaria Overfull \hbox (139.81235pt too wide) in paragraph at lines 542--544 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (105.7023pt too wide) in paragraph at lines 544--546 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportSimpleMalariaTransmission Overfull \hbox (53.55234pt too wide) in paragraph at lines 546--548 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportVectorGenetics Overfull \hbox (58.82233pt too wide) in paragraph at lines 548--550 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportVectorMigration Overfull \hbox (38.01233pt too wide) in paragraph at lines 550--552 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportVectorStats Overfull \hbox (105.63234pt too wide) in paragraph at lines 552--554 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportVectorStatsMalariaGenetics Overfull \hbox (85.44229pt too wide) in paragraph at lines 554--556 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.SpatialReportMalariaFiltered Overfull \hbox (38.46233pt too wide) in paragraph at lines 556--558 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.SqlReportMalaria Overfull \hbox (73.30234pt too wide) in paragraph at lines 558--560 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.SqlReportMalariaGenetics Overfull \hbox (49.27232pt too wide) in paragraph at lines 560--562 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.VectorHabitatReport Underfull \hbox (badness 10000) in paragraph at lines 562--564 []\T1/txtt/m/n/10 parse_date() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 562--564 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Overfull \hbox (80.38231pt too wide) in paragraph at lines 564--566 []\T1/txtt/m/n/10 provenance \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherAttributes Overfull \hbox (60.9415pt too wide) in paragraph at lines 569--571 []\T1/txtt/m/n/10 RAINFALL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_variable.WeatherVariable [130] Overfull \hbox (108.19136pt too wide) in paragraph at lines 571--573 []\T1/txtt/m/n/10 RELATIVE_HUMIDITY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_variable.WeatherVariable Overfull \hbox (43.26233pt too wide) in paragraph at lines 573--575 []\T1/txtt/m/n/10 report \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_request.WeatherRequest Underfull \hbox (badness 10000) in paragraph at lines 575--577 []\T1/txtt/m/n/10 ReportDrugStatus \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 577--579 []\T1/txtt/m/n/10 ReportEventCounter \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 581--583 []\T1/txtt/m/n/10 ReportHumanMigrationTracking \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 583--585 []\T1/txtt/m/n/10 ReportInfectionStatsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 c lass in Underfull \hbox (badness 10000) in paragraph at lines 585--587 []\T1/txtt/m/n/10 ReportInterventionPopAvg \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas s in Underfull \hbox (badness 10000) in paragraph at lines 587--589 []\T1/txtt/m/n/10 ReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 589--591 []\T1/txtt/m/n/10 ReportMalariaFilteredIntraHost \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 class in Underfull \hbox (badness 10000) in paragraph at lines 591--593 []\T1/txtt/m/n/10 ReportNodeDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 593--595 []\T1/txtt/m/n/10 ReportNodeDemographicsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 597--599 []\T1/txtt/m/n/10 ReportSimpleMalariaTransmission \T1/qtm/m/n/10 (\T1/qtm/m/it/ 10 class in Underfull \hbox (badness 10000) in paragraph at lines 599--601 []\T1/txtt/m/n/10 ReportVectorGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 601--603 []\T1/txtt/m/n/10 ReportVectorMigration \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 603--605 []\T1/txtt/m/n/10 ReportVectorStats \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 605--607 []\T1/txtt/m/n/10 ReportVectorStatsMalariaGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it /10 class in Underfull \hbox (badness 10000) in paragraph at lines 607--609 []\T1/txtt/m/n/10 RequestReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 609--611 []\T1/txtt/m/n/10 required_metadata_defaults_dict() Overfull \hbox (66.21246pt too wide) in paragraph at lines 609--611 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather Attributes Underfull \hbox (badness 10000) in paragraph at lines 614--616 []\T1/txtt/m/n/10 save_json() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 614--616 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 616--618 []\T1/txtt/m/n/10 select_weather_files() Overfull \hbox (12.87247pt too wide) in paragraph at lines 616--618 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_set.WeatherSet Overfull \hbox (89.76228pt too wide) in paragraph at lines 618--620 []\T1/txtt/m/n/10 series_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherMetadata Overfull \hbox (79.26231pt too wide) in paragraph at lines 620--622 []\T1/txtt/m/n/10 series_len \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherMetadata Underfull \hbox (badness 10000) in paragraph at lines 622--624 []\T1/txtt/m/n/10 series_unique_count Overfull \hbox (65.09247pt too wide) in paragraph at lines 622--624 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather Metadata Underfull \hbox (badness 10000) in paragraph at lines 624--626 []\T1/txtt/m/n/10 set_drug_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 626--628 []\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 628--630 []\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 630--632 []\T1/txtt/m/n/10 set_parasite_genetics_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (167.7723pt too wide) in paragraph at lines 632--634 []\T1/txtt/m/n/10 set_risk_high() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.demographics.MalariaDemographics.MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 634--636 []\T1/txtt/m/n/10 set_risk_lowmedium() Overfull \hbox (127.35252pt too wide) in paragraph at lines 634--636 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 636--638 []\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 638--640 []\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 640--642 []\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 642--644 []\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 644--646 []\T1/txtt/m/n/10 set_team_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Overfull \hbox (122.38219pt too wide) in paragraph at lines 646--648 []\T1/txtt/m/n/10 spatial_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal aria.weather.weather_metadata.WeatherAttributes Underfull \hbox (badness 10000) in paragraph at lines 648--650 []\T1/txtt/m/n/10 SpatialReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 650--652 []\T1/txtt/m/n/10 species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.16747pt too wide) in paragraph at lines 650--652 \T1/qtm/m/it/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 652--654 []\T1/txtt/m/n/10 SqlReportMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 654--656 []\T1/txtt/m/n/10 SqlReportMalariaGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas s in Overfull \hbox (55.58226pt too wide) in paragraph at lines 656--658 []\T1/txtt/m/n/10 step_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.DataFrameInfo Overfull \hbox (31.29233pt too wide) in paragraph at lines 661--663 []\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_data.WeatherData Overfull \hbox (16.54234pt too wide) in paragraph at lines 663--665 []\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_set.WeatherSet Overfull \hbox (62.79224pt too wide) in paragraph at lines 665--667 []\T1/txtt/m/n/10 to_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria .weather.weather_data.WeatherData Overfull \hbox (48.04225pt too wide) in paragraph at lines 667--669 []\T1/txtt/m/n/10 to_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria .weather.weather_set.WeatherSet Overfull \hbox (36.54231pt too wide) in paragraph at lines 669--671 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat her.weather_data.WeatherData Overfull \hbox (36.54231pt too wide) in paragraph at lines 671--673 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat her.weather_data.WeatherData Overfull \hbox (74.01233pt too wide) in paragraph at lines 673--675 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat her.weather_metadata.WeatherMetadata [131] Overfull \hbox (27.04231pt too wide) in paragraph at lines 675--677 []\T1/txtt/m/n/10 to_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Overfull \hbox (48.8824pt too wide) in paragraph at lines 677--679 []\T1/txtt/m/n/10 tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w eather_metadata.WeatherAttributes Overfull \hbox (116.0122pt too wide) in paragraph at lines 679--681 []\T1/txtt/m/n/10 total_value_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_metadata.WeatherMetadata Overfull \hbox (69.88234pt too wide) in paragraph at lines 684--686 []\T1/txtt/m/n/10 update() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_metadata.WeatherAttributes Overfull \hbox (117.1322pt too wide) in paragraph at lines 686--688 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_metadata.WeatherAttributes Overfull \hbox (41.7923pt too wide) in paragraph at lines 691--693 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_data.WeatherData Overfull \hbox (80.38231pt too wide) in paragraph at lines 693--695 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherAttributes Overfull \hbox (79.26231pt too wide) in paragraph at lines 695--697 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherMetadata Overfull \hbox (51.64227pt too wide) in paragraph at lines 697--699 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_request.WeatherArgs Overfull \hbox (27.04231pt too wide) in paragraph at lines 699--701 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 701--703 []\T1/txtt/m/n/10 validate_str_value() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 701--703 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Overfull \hbox (102.9422pt too wide) in paragraph at lines 703--705 []\T1/txtt/m/n/10 validate_types() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_variable.WeatherVariable Overfull \hbox (60.83224pt too wide) in paragraph at lines 705--707 []\T1/txtt/m/n/10 value_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_data.DataFrameInfo Overfull \hbox (16.54234pt too wide) in paragraph at lines 707--709 []\T1/txtt/m/n/10 values() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 709--711 []\T1/txtt/m/n/10 VectorHabitatReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (53.29224pt too wide) in paragraph at lines 714--716 []\T1/txtt/m/n/10 weather_columns \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 716--717 []\T1/txtt/m/n/10 weather_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (84.04218pt too wide) in paragraph at lines 717--719 []\T1/txtt/m/n/10 weather_variables \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_request.DataSource Overfull \hbox (63.7922pt too wide) in paragraph at lines 719--721 []\T1/txtt/m/n/10 weather_variables \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 721--723 []\T1/txtt/m/n/10 WeatherArgs \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 723--725 []\T1/txtt/m/n/10 WeatherAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 723--725 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 725--727 []\T1/txtt/m/n/10 WeatherData \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 725--727 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_data\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 727--729 []\T1/txtt/m/n/10 WeatherMetadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 727--729 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 729--731 []\T1/txtt/m/n/10 WeatherRequest \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (16.7023pt too wide) in paragraph at lines 731--733 []\T1/txtt/m/n/10 WeatherSet \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emodpy_ma laria.weather.weather_set\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 733--735 []\T1/txtt/m/n/10 WeatherVariable \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 733--735 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_variable\T1/qtm/m/n/10 ), Overfull \hbox (5.75735pt too wide) in paragraph at lines 738--739 []\T1/txtt/m/n/10 ymd() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emodpy_malar ia.weather.weather_utils\T1/qtm/m/n/10 ), [132]) (./institute-for-disease-modeling-emodpy-malaria.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-emodpy-mal aria.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r .enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (136 pages, 573248 bytes). Transcript written on institute-for-disease-modeling-emodpy-malaria.log. Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-emodpy-malaria.aux' 'institute-for-disease-modeling-emodpy-malaria.out' 'institute-for-disease-modeling-emodpy-malaria.toc' ------------ Run number 3 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-emodpy-malaria" "emodpy-malaria-docs.tex"' ------------ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./emodpy-malaria-docs.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file institute-for-disease-modeling-emodpy-malaria.idx (./institute-for-disease-modeling-emodpy-malaria.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./institute-for-disease-modeling-emodpy-malaria.out) (./institute-for-disease-modeling-emodpy-malaria.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-emodpy-malaria.toc) [1] [2] [1] [2] Chapter 1. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3] [4] Chapter 2. Overfull \hbox (57.31381pt too wide) in paragraph at lines 258--258 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| Underfull \hbox (badness 5274) in paragraph at lines 305--308 []\T1/qtm/m/n/10 Set ini-tial risk for low-medium trans-mis-sion set-tings per: [][]$https : / / wiki . idmod . org / display / MAL / [5] Overfull \hbox (20.56392pt too wide) in paragraph at lines 413--413 \T1/qtm/m/it/10 clude_biting_heterogeneity=True\T1/txtt/m/n/10 )| [6] Overfull \hbox (35.49402pt too wide) in paragraph at lines 457--457 \T1/qtm/m/it/10 pop_filename_out=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 spatial_grid ded_pop_dir\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 733--736 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 743--747 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 743--747 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [10] Underfull \hbox (badness 10000) in paragraph at lines 878--881 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [11] Underfull \hbox (badness 10000) in paragraph at lines 888--892 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 888--892 \T1/qtm/b/n/10 erty_Restrictions_Within_Node\T1/qtm/m/n/10 . In the for-mat \T1 /txtt/m/n/10 [{ "BitingRisk":"High"}, [12] Overfull \hbox (27.94388pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (8.55386pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (4.09389pt too wide) in paragraph at lines 985--985 \T1/qtm/m/it/10 out_on_first_occurrence: [13] Underfull \hbox (badness 10000) in paragraph at lines 1026--1029 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1036--1039 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [14] Underfull \hbox (badness 10000) in paragraph at lines 1118--1121 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 1128--1131 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (31.3137pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (29.93373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (61.05371pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (9.43373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 get_age_min: Overfull \hbox (11.09373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 get_age_max: Overfull \hbox (2.46371pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 get_gender: Overfull \hbox (6.86372pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 tial_amount: Overfull \hbox (42.41373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 amount_in_shipment: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (59.27374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 days_between_shipments: Overfull \hbox (11.68375pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 3.40282e+38\T1/qtm/m/n/10 , Overfull \hbox (3.82375pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 tion_config: Overfull \hbox (1.05374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 tional[][][any] Overfull \hbox (60.84373pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 max_distributed_per_day: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (0.53372pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 max_stock: Overfull \hbox (7.99374pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 2147480000\T1/qtm/m/n/10 , Overfull \hbox (2.71375pt too wide) in paragraph at lines 1170--1170 \T1/qtm/m/it/10 ing_period: [15] Overfull \vbox (11.56755pt too high) has occurred while \output is active [16] Underfull \hbox (badness 10000) in paragraph at lines 1203--1206 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [17] Underfull \hbox (badness 10000) in paragraph at lines 1315--1320 []\T1/txtt/bx/n/10 diagnostic_type \T1/qtm/m/n/10 ^^U Type of malaria di-ag-nos -tic used. De-fault is [18] Underfull \hbox (badness 10000) in paragraph at lines 1371--1375 []\T1/qtm/m/n/10 In ga-me-to-cytes/microliter, use mea-sure- Underfull \hbox (badness 10000) in paragraph at lines 1399--1402 []\T1/txtt/bx/n/10 measurement_sensitivity \T1/qtm/m/n/10 ^^U Set-ting for \T1/ qtm/b/n/10 Mea-sure-ment_Sensitivity \T1/qtm/m/n/10 in Underfull \hbox (badness 10000) in paragraph at lines 1428--1434 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U List of In-di-v id-u-al-Prop-erty key:value Underfull \hbox (badness 10000) in paragraph at lines 1428--1434 \T1/qtm/m/n/10 pairs that in-di-vid-u-als must have to re-ceive the di-ag-nos-t ic in-ter-ven- Underfull \hbox (badness 10000) in paragraph at lines 1428--1434 \T1/qtm/m/n/10 tion. For ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"Pr opertyValue1"}, Underfull \hbox (badness 10000) in paragraph at lines 1436--1441 []\T1/txtt/bx/n/10 disqualifying_properties \T1/qtm/m/n/10 ^^U List of In-di-vi d-u-al-Prop-erty Underfull \hbox (badness 10000) in paragraph at lines 1436--1441 \T1/qtm/m/n/10 key:value pairs that cause an in-ter-ven-tion to be aborted. For Underfull \hbox (badness 10000) in paragraph at lines 1436--1441 \T1/qtm/m/n/10 ex-am-ple, \T1/txtt/m/n/10 [{"IndividualProperty1":"PropertyValu e1"}, [19] Underfull \hbox (badness 10000) in paragraph at lines 1464--1468 []\T1/txtt/bx/n/10 expire_recent_drugs \T1/qtm/m/n/10 ^^U Adds \T1/txtt/m/n/10 [{"DrugStatus:None"}] \T1/qtm/m/n/10 to \T1/qtm/b/n/10 Prop- Overfull \hbox (1.69395pt too wide) in paragraph at lines 1485--1485 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 1516--1519 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [20] Underfull \hbox (badness 10000) in paragraph at lines 1526--1529 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [21] Overfull \hbox (72.89397pt too wide) in paragraph at lines 1650--1650 \T1/qtm/m/it/10 ing_drugs_event_name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Received _Campaign_Drugs\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [22] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [23] Overfull \hbox (25.23418pt too wide) in paragraph at lines 1879--1879 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (54.63417pt too wide) in paragraph at lines 1879--1879 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1896--1896 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1896--1896 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [24] Overfull \hbox (30.48416pt too wide) in paragraph at lines 1913--1913 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (59.88416pt too wide) in paragraph at lines 1913--1913 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] Underfull \hbox (badness 10000) in paragraph at lines 1914--1918 []\T1/qtm/m/n/10 Add an fMDA (fo-cal mass drug ad-min-is-tra-tion) drug in-ter- ven-tion to your cam-paign. See Overfull \hbox (40.98413pt too wide) in paragraph at lines 1930--1930 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (70.38412pt too wide) in paragraph at lines 1930--1930 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [25] Overfull \hbox (35.73415pt too wide) in paragraph at lines 1947--1947 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.BroadcastEvent] Overfull \hbox (65.13414pt too wide) in paragraph at lines 1947--1947 \T1/qtm/m/it/10 tional[][][emod_api.interventions.common.PropertyValueChanger] [26] [27] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2104--2104 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2104--2104 \T1/qtm/m/it/10 pelling_decay_time_constant: [28] Overfull \hbox (26.20386pt too wide) in paragraph at lines 2183--2183 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (28.42386pt too wide) in paragraph at lines 2183--2183 \T1/qtm/m/it/10 pelling_decay_time_constant: [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 2389--2392 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2399--2402 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2502--2505 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [34] Underfull \hbox (badness 10000) in paragraph at lines 2592--2595 []\T1/txtt/bx/n/10 habitat_target \T1/qtm/m/n/10 ^^U Pos-si-ble val-ues are: ^^ PTEM-PO-RARY_RAINFALL^^Q, ^^PWA- Underfull \hbox (badness 10000) in paragraph at lines 2592--2595 \T1/qtm/m/n/10 TER_VEGETATION^^Q, ^^PHU-MAN_POPULATION^^Q, ^^PCON-STANT^^Q, ^^P BRACK- Overfull \hbox (54.1938pt too wide) in paragraph at lines 2644--2644 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (1.7138pt too wide) in paragraph at lines 2644--2644 \T1/qtm/m/it/10 leased_infectious: Overfull \hbox (19.54382pt too wide) in paragraph at lines 2644--2644 \T1/qtm/m/it/10 leased_microsopridia: [35] Underfull \hbox (badness 10000) in paragraph at lines 2665--2668 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 7576) in paragraph at lines 2681--2683 []\T1/txtt/bx/n/10 released_number \T1/qtm/m/n/10 ^^U The num-ber of vec-tors t o re-lease, sets Re-leased_Type = [36] Underfull \hbox (badness 10000) in paragraph at lines 2692--2695 []\T1/txtt/bx/n/10 released_infectious \T1/qtm/m/n/10 ^^U The frac-tion of vec- tors re-leased that Underfull \hbox (badness 10000) in paragraph at lines 2692--2695 \T1/qtm/m/n/10 are to be in-fec-tious. One can only use this fea-ture when Overfull \hbox (16.29498pt too wide) in paragraph at lines 2692--2695 \T1/qtm/m/n/10 `Malaria_Model'!='MALARIA_MECHANISTIC_MODEL_WITH_PARASITE_GENETI CS' [37] Underfull \hbox (badness 10000) in paragraph at lines 2787--2790 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 2797--2800 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Overfull \hbox (12.19392pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (14.34396pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 ate_nucleotide_sequence_from: Overfull \hbox (79.13393pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 code_allele_frequencies_per_genome_location: Overfull \hbox (118.29388pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 drug_resistant_allele_frequencies_per_genome_location: Overfull \hbox (74.29391pt too wide) in paragraph at lines 2850--2850 \T1/qtm/m/it/10 hrp_allele_frequencies_per_genome_location: [38] Underfull \hbox (badness 10000) in paragraph at lines 2883--2886 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [39] Underfull \hbox (badness 10000) in paragraph at lines 2893--2896 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, Underfull \hbox (badness 10000) in paragraph at lines 2934--2940 []\T1/txtt/bx/n/10 drug_resistant_string \T1/qtm/m/n/10 ^^U Used with `BAR-CODE _STRING' or `NU- Underfull \hbox (badness 10000) in paragraph at lines 2955--2961 []\T1/txtt/bx/n/10 barcode_allele_frequencies_per_genome_location \T1/qtm/m/n/1 0 ^^U Used with `AL- [40] Underfull \hbox (badness 10000) in paragraph at lines 2971--2976 []\T1/txtt/bx/n/10 hrp_allele_frequencies_per_genome_location \T1/qtm/m/n/10 ^^ U Used with `AL- Overfull \hbox (17.44391pt too wide) in paragraph at lines 2997--2997 \T1/qtm/m/it/10 timesteps_between_repetitions: [41] Underfull \hbox (badness 10000) in paragraph at lines 3030--3033 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3040--3043 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [42] Underfull \hbox (badness 10000) in paragraph at lines 3128--3131 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 3138--3141 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [43] Overfull \hbox (59.44379pt too wide) in paragraph at lines 3228--3228 \T1/qtm/m/it/10 timesteps_between_repetitions: [44] Overfull \hbox (69.94376pt too wide) in paragraph at lines 3305--3305 \T1/qtm/m/it/10 timesteps_between_repetitions: Underfull \hbox (badness 10000) in paragraph at lines 3339--3342 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [45] Overfull \hbox (33.19386pt too wide) in paragraph at lines 3364--3364 \T1/qtm/m/it/10 timesteps_between_repetitions: Overfull \hbox (26.16386pt too wide) in paragraph at lines 3364--3364 \T1/qtm/m/it/10 killing_decay_time_constant: Underfull \hbox (badness 10000) in paragraph at lines 3380--3383 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [46] Underfull \hbox (badness 10000) in paragraph at lines 3498--3501 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with [47] [48] Overfull \hbox (5.13391pt too wide) in paragraph at lines 3600--3600 \T1/qtm/m/it/10 drug_ineligibility_duration: Underfull \hbox (badness 10000) in paragraph at lines 3620--3625 []\T1/txtt/bx/n/10 is \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 properties of individual s to target with the intervention. Underfull \hbox (badness 6094) in paragraph at lines 3620--3625 \T1/txtt/m/sl/10 Default\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 [{ "trigger":"NewC linicalCase","coverage":0.8,"agemin":15, Underfull \hbox (badness 10000) in paragraph at lines 3620--3625 \T1/txtt/m/n/10 "agemax":70, "seek":0.4,"rate":0.3},{"trigger":"NewSevereCase", Underfull \hbox (badness 10000) in paragraph at lines 3643--3645 []\T1/txtt/bx/n/10 example, \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 individuals must h ave to receive the Underfull \hbox (badness 10000) in paragraph at lines 3643--3645 \T1/txtt/m/sl/10 intervention. For\T1/qtm/m/n/10 ) ^^U \T1/txtt/m/n/10 ["Indivi dualProperty1:PropertyValue1", [49] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3679--3679 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (11.9936pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tar- Overfull \hbox (84.11362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 get_num_individuals: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (39.17361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]int[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3679--3679 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3679--3679 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3679--3679 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3679--3679 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [50] Overfull \vbox (839.56755pt too high) has occurred while \output is active [51] Underfull \hbox (badness 6188) in paragraph at lines 3684--3689 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3719--3722 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [52] [53] Overfull \hbox (39.43362pt too wide) in paragraph at lines 3882--3882 []\T1/qtm/m/it/10 campaign\T1/qtm/m/n/10 , Overfull \hbox (38.10359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 start_day: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (10.26363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 de- Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 mo- Overfull \hbox (71.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 graphic_coverage: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (36.93362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 node_ids: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (103.05359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ind_property_restrictions: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 trig- Overfull \hbox (73.31358pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ger_condition_list: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 trig- Overfull \hbox (93.44359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 gered_campaign_delay: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (46.39362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]float[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (10.27362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 lis- Overfull \hbox (12.89363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ten- Overfull \hbox (52.80362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (0.82362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 - Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 in- Overfull \hbox (11.28362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ter- Overfull \hbox (14.40361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ven- Overfull \hbox (43.04362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tion_name: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (14.07361pt too wide) in paragraph at lines 3882--3882 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 Us- Overfull \hbox (26.47362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ageDe- Overfull \hbox (15.26363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pen- Overfull \hbox (33.59363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 dentBed- Overfull \hbox (14.20361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 net\TS1/qtm/m/it/10 '\T1/qtm/m/n/10 , Overfull \hbox (12.49362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 dis- Overfull \hbox (48.29361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 card_config: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (8.60362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 in- Overfull \hbox (13.59363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 sec- Overfull \hbox (6.38362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ti- Overfull \hbox (17.48363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 cide: Overfull \hbox (7.95361pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 str[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.27359pt too wide) in paragraph at lines 3882--3882 \TS1/qtm/m/it/10 ''\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 re- Overfull \hbox (83.63359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pelling_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 re- Overfull \hbox (86.9436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pelling_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (8.8536pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 re- Overfull \hbox (117.6336pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 pelling_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (68.63359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (12.49362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0.9\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (71.9436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (102.6336pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (14.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 730\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (68.60362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_linear_times: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (72.79362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_linear_values: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (40.7436pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]list[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (21.93361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 block- Overfull \hbox (75.51361pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 ing_expire_at_end: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (81.41359pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 killing_initial_effect: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (84.7236pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 killing_box_duration: Overfull \hbox (8.05362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 int[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (4.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 0\T1/qtm/m/n/10 , Overfull \hbox (115.4136pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 killing_decay_time_constant: Overfull \hbox (15.27362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 float[][] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (19.99362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 1460\T1/qtm/m/n/10 , Overfull \hbox (67.01363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 age_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (20.85362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/qtm/m/n/10 , Overfull \hbox (14.15363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 sea- Overfull \hbox (74.69363pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 sonal_dependence: Overfull \hbox (13.04362pt too wide) in paragraph at lines 3882--3882 [][]\T1/qtm/m/it/10 Op- Overfull \hbox (43.61362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 tional[][][[][]dict[][]] Overfull \hbox (4.24362pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 = Overfull \hbox (23.6036pt too wide) in paragraph at lines 3882--3882 \T1/qtm/m/it/10 None\T1/txtt/m/n/10 )| [54] Overfull \vbox (979.56999pt too high) has occurred while \output is active [55] Underfull \hbox (badness 6188) in paragraph at lines 3887--3893 []\T1/qtm/m/n/10 box_duration = 0 + de-cay_time_constant > 0 => Waning-Ef-fect- Ex-po-nen-tial Underfull \hbox (badness 10000) in paragraph at lines 3918--3921 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [56] [57] Overfull \hbox (88.19377pt too wide) in paragraph at lines 4095--4095 \T1/qtm/m/it/10 name=\TS1/qtm/m/it/10 '\T1/qtm/m/it/10 UsageDependentBednet.jso n\TS1/qtm/m/it/10 '\T1/txtt/m/n/10 )| [58] Underfull \hbox (badness 10000) in paragraph at lines 4139--4142 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4149--4152 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [59] Underfull \hbox (badness 10000) in paragraph at lines 4252--4255 []\T1/txtt/bx/n/10 repetitions \T1/qtm/m/n/10 ^^U The num-ber of times an in-te r-ven-tion is given, used with Underfull \hbox (badness 10000) in paragraph at lines 4262--4265 []\T1/txtt/bx/n/10 ind_property_restrictions \T1/qtm/m/n/10 ^^U A list of dic-t io-nar-ies of In-di-vid-u-al-Prop-er-ties, [60] [61] Overfull \hbox (31.91403pt too wide) in paragraph at lines 4411--4411 \T1/qtm/m/it/10 cific_genome_combinations_for_stratification: Underfull \hbox (badness 5119) in paragraph at lines 4461--4468 \T1/qtm/m/n/10 0 is sim-i-lar to 0-1). De-pends on: ^^PGENOME^^Q, ^^PSPE-CIFIC_ GENOME^^Q spe- [62] [63] [64] [65] Overfull \hbox (2.92401pt too wide) in paragraph at lines 4785--4785 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [66] Overfull \hbox (6.20389pt too wide) in paragraph at lines 4858--4858 \T1/qtm/m/it/10 must_have_ip_key_value: Overfull \hbox (1.87387pt too wide) in paragraph at lines 4858--4858 \T1/qtm/m/it/10 must_have_intervention: Overfull \hbox (55.41386pt too wide) in paragraph at lines 4858--4858 \T1/qtm/m/it/10 clude_30day_avg_infection_duration: [67] Underfull \hbox (badness 5119) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 put for. Avail-able chan-nels are: ^^PAdult_Vectors^^Q, ^^PAir_T emperature^^Q, ^^PBirths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PBlood_Smear_Gametocyte_Prevalence^^Q, ^^PBlood_Smear_Parasite _Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PCam-paign_Cost^^Q, ^^PDaily_Bites_Per_Human^^Q, ^^PDaily_EIR^ ^Q, ^^PDis-ease_Deaths^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PNew_Reported_Infections^^Q, ^^PNew_Severe_Cases^^Q, ^^PPCR_Ga metocyte_Prevalence^^Q, Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 ^^PPCR_Parasite_Prevalence^^Q, ^^PPfHRP2_Prevalence^^Q, ^^PPop-u -la-tion^^Q, ^^PPreva- Underfull \hbox (badness 10000) in paragraph at lines 4981--4990 \T1/qtm/m/n/10 lence^^Q, ^^PRain-fall^^Q, ^^PRel-a-tive_Humidity^^Q, ^^PTrue_Pr evalence^^Q De-faults: [68] [69] [70] [71] [72] Overfull \hbox (4.70392pt too wide) in paragraph at lines 5504--5504 \T1/qtm/m/it/10 ify_by_clinical_symptoms: [73] Overfull \hbox (38.49373pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 drug_resistant_strings: Overfull \hbox (102.98372pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 drug_resistant_and_hrp_statistic_type: Overfull \hbox (156.42372pt too wide) in paragraph at lines 5550--5550 \TS1/qtm/m/it/10 '\T1/qtm/m/it/10 NUM_PEOPLE_WITH_RESISTANT_INFECTION\TS1/qtm/m /it/10 '\T1/qtm/m/n/10 , Overfull \hbox (18.46376pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 ip_key_to_collect: Overfull \hbox (4.78375pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 ify_by_gender: Overfull \hbox (37.74379pt too wide) in paragraph at lines 5550--5550 \T1/qtm/m/it/10 clude_identity_by_xxx: [74] Overfull \hbox (5.15385pt too wide) in paragraph at lines 5656--5656 \T1/qtm/m/it/10 clude_microsporidia: [75] [76] Underfull \hbox (badness 7308) in paragraph at lines 5726--5728 []\T1/txtt/bx/n/10 event_list \T1/qtm/m/n/10 ^^U a list of events to record or ex-clude, de-pend-ing on value of [77] Underfull \hbox (badness 10000) in paragraph at lines 5907--5910 \T1/qtm/m/n/10 im-plies one should get data on days Start_Day, Start_Day+Sampli ng_Period, [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6054--6060 []\T1/qtm/m/n/10 The sim-ple malaria trans-mis-sion re-port (Re-port-Sim-ple-Ma lar-i-a-Trans-mis-sion.csv) is a csv re- Underfull \hbox (badness 6592) in paragraph at lines 6054--6060 \T1/qtm/m/n/10 port that pro-vides data on malaria trans-mis-sion, by track-ing who trans-mit-ted malaria to whom. Underfull \hbox (badness 10000) in paragraph at lines 6054--6060 \T1/qtm/m/n/10 The re-port can only be used when the sim-u-la-tion setup pa-ram -e-ter \T1/qtm/b/n/10 Malaria_Model \T1/qtm/m/n/10 is set to Underfull \hbox (badness 5388) in paragraph at lines 6054--6060 \T1/qtm/m/n/10 MALARIA_MECHANISTIC_MODEL_WITH_CO_TRANSMISSION. This re-port is typ-i-cally used as [80] [81] [82] Overfull \hbox (3.4238pt too wide) in paragraph at lines 6418--6418 \T1/qtm/m/it/10 ing.Optional[str] [83] [84] [85] Overfull \hbox (21.45433pt too wide) in paragraph at lines 6676--6676 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (11.94434pt too wide) in paragraph at lines 6676--6676 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me tadata.WeatherAttributes[][]\T1/qtm/m/it/10 ] Overfull \hbox (21.45433pt too wide) in paragraph at lines 6676--6676 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [86] Overfull \hbox (21.45433pt too wide) in paragraph at lines 6735--6735 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (21.45433pt too wide) in paragraph at lines 6735--6735 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [87] Overfull \hbox (5.21489pt too wide) in paragraph at lines 6767--6770 [] Overfull \hbox (93.15411pt too wide) in paragraph at lines 6810--6810 \T1/qtm/m/it/10 tional[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_me tadata.WeatherMetadata[][]\T1/qtm/m/it/10 ] [88] [89] [90] [91] Overfull \hbox (162.35397pt too wide) in paragraph at lines 7250--7250 \T1/qtm/m/it/10 tional[][][[][]Union[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weat her.weather_metadata.WeatherMetadata[][]\T1/qtm/m/it/10 , Overfull \hbox (109.32397pt too wide) in paragraph at lines 7250--7250 [][]\T1/qtm/m/n/10 emodpy_malaria.weather.weather_metadata.WeatherAttributes[][ ]\T1/qtm/m/it/10 , [92] Overfull \hbox (79.22398pt too wide) in paragraph at lines 7480--7480 \T1/qtm/m/it/10 tools_platform_comps.comps_platform.COMPSPlatform[][]]\T1/qtm/m /n/10 , [93] Overfull \hbox (94.95412pt too wide) in paragraph at lines 7603--7603 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , Overfull \hbox (94.95412pt too wide) in paragraph at lines 7603--7603 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [94] [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 7906--7910 []\T1/qtm/m/n/10 For ex-am-ple, air Underfull \hbox (badness 10000) in paragraph at lines 7906--7910 \T1/qtm/m/n/10 tem-per-a-ture could be rep-re-sented as: Weath-er-Vari-able.AIR _TEMPERATURE: Overfull \hbox (23.18442pt too wide) in paragraph at lines 7921--7921 \T1/qtm/m/it/10 tional[][][[][]List[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 ]] Overfull \hbox (20.21443pt too wide) in paragraph at lines 7921--7921 \T1/qtm/m/it/10 tional[][][[][]Dict[][][[][]\T1/qtm/m/n/10 emodpy_malaria.weath er.weather_variable.WeatherVariable[][]\T1/qtm/m/it/10 , [97] Overfull \hbox (21.12492pt too wide) in paragraph at lines 7949--7952 [] Underfull \hbox (badness 10000) in paragraph at lines 7949--7952 \T1/qtm/m/n/10 In this case low-er-case weather vari-able names are used, for e x-am-ple: [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8237--8240 []\T1/qtm/m/n/10 Sets up the de-fault pa-ram-e-ters for par-a-site ge-net-ics s im-u-la-tions Malaria_Model = Underfull \hbox (badness 6510) in paragraph at lines 8251--8253 []\T1/txtt/bx/n/10 var_gene_randomness_type \T1/qtm/m/n/10 ^^U pos-si-ble val-u es are ^^PFIXED_NEIGHBORHOOD^^Q, [100] Underfull \hbox (badness 10000) in paragraph at lines 8401--8405 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [101] Overfull \hbox (31.99455pt too wide) in paragraph at lines 8456--8459 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 8461--8464 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 8466--8469 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 8471--8479 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 8494--8502 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 8494--8502 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [102] [103] [104] [105] [106] [107] [108] [109] Underfull \hbox (badness 10000) in paragraph at lines 9252--9256 \T1/qtm/m/n/10 sim-u-la-tion.task.config.parameters.Vector_Species_Params[i][^^ PHabitats^^Q][j][^^PMax_Larval_Capacity^^Q] = [110] Overfull \hbox (31.99455pt too wide) in paragraph at lines 9307--9310 []\T1/txtt/bx/n/10 female_to_male_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_to_Male_Transmission_Probability Overfull \hbox (34.43456pt too wide) in paragraph at lines 9312--9315 []\T1/txtt/bx/n/10 male_to_female_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Male_To_Female_Transmission_Probability Overfull \hbox (24.19456pt too wide) in paragraph at lines 9317--9320 []\T1/txtt/bx/n/10 female_to_egg_probability \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi-crosporidia_Female_To_Egg_Transmission_Probability Underfull \hbox (badness 10000) in paragraph at lines 9322--9330 []\T1/txtt/bx/n/10 duration_to_disease_acquisition_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9345--9353 []\T1/txtt/bx/n/10 duration_to_disease_transmission_modification \T1/qtm/m/n/10 ^^U \T1/qtm/b/n/10 Mi- Underfull \hbox (badness 10000) in paragraph at lines 9345--9353 \T1/qtm/b/n/10 crosporidia_Duration_To_Disease_Transmission_Modification\T1/qtm /m/n/10 , A dic-tio-nary for [111] [112] Chapter 3. [113] [114] [115] Overfull \hbox (15.08487pt too wide) in paragraph at lines 9615--9617 \T1/qtm/m/n/10 You need to spec-ify `^^Uindex-url = [][]$https : /$[][]/@idmod.org:@packages.idmod.org/api/pypi/pypi- [116] [117] [118] [119] [120] [121] [122] Overfull \hbox (19.37178pt too wide) in paragraph at lines 9964--9965 []\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 , Overfull \hbox (45.6217pt too wide) in paragraph at lines 9969--9970 []\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m /n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9972--9973 []\T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 9977--9978 []\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 9979--9980 []\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 , Overfull \hbox (35.12173pt too wide) in paragraph at lines 9980--9981 []\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 9981--9982 []\T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 , Overfull \hbox (14.1218pt too wide) in paragraph at lines 9983--9984 []\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 , Overfull \hbox (40.37172pt too wide) in paragraph at lines 9984--9985 []\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/ n/10 , Overfull \hbox (3.62183pt too wide) in paragraph at lines 9987--9988 []\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 , [123] (./institute-for-disease-modeling-emodpy-malaria.ind [124] Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 8--10 \T1/qtm/m/it/10 emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/txtt/m/n/10 add_campaign_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 10--12 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/txtt/m/n/10 add_community_health_worker() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (47.96248pt too wide) in paragraph at lines 12--14 \T1/qtm/m/it/10 emodpy_malaria.interventions.community_health_worker\T1/qtm/m/n /10 ), Underfull \hbox (badness 10000) in paragraph at lines 14--16 []\T1/txtt/m/n/10 add_diagnostic_survey() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 14--16 \T1/qtm/m/it/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/txtt/m/n/10 add_drug_campaign() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (4.22249pt too wide) in paragraph at lines 16--18 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/txtt/m/n/10 add_drug_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/txtt/m/n/10 add_drug_status_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/txtt/m/n/10 add_event_recorder() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/txtt/m/n/10 add_fMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 24--26 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/txtt/m/n/10 add_genes_and_alleles() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/txtt/m/n/10 add_habitat_reduction_event() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 28--30 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/txtt/m/n/10 add_human_migration_tracking() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 add_initial_vectors_per_species() Overfull \hbox (127.35252pt too wide) in paragraph at lines 32--34 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 add_initial_vectors_per_species_from_csv() Overfull \hbox (127.35252pt too wide) in paragraph at lines 34--36 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 add_insecticide_resistance() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/txtt/m/n/10 add_itn_scheduled() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 add_itn_triggered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 add_larval_habitat_multiplier() Overfull \hbox (127.35252pt too wide) in paragraph at lines 44--46 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/txtt/m/n/10 add_larvicide() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 46--48 \T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/txtt/m/n/10 add_malaria_immunity_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 52--54 []\T1/txtt/m/n/10 add_malaria_patient_json_report() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/txtt/m/n/10 add_malaria_summary_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/txtt/m/n/10 add_malaria_survey_analyzer() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/txtt/m/n/10 add_MDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 58--60 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 60--62 []\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/txtt/m/n/10 add_microsporidia() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/txtt/m/n/10 add_MSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 64--66 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/txtt/m/n/10 add_mutation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/txtt/m/n/10 add_outbreak_individual() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 68--70 \T1/qtm/m/it/10 emodpy_malaria.interventions.outbreak\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/txtt/m/n/10 add_outbreak_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/ 10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/txtt/m/n/10 add_outbreak_malaria_var_genes() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 74--76 []\T1/txtt/m/n/10 add_outdoorrestkill() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/txtt/m/n/10 add_report_event_counter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [125] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/txtt/m/n/10 add_report_fpg_output() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/txtt/m/n/10 add_report_intervention_pop_avg() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/txtt/m/n/10 add_report_malaria_filtered() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/txtt/m/n/10 add_report_malaria_filtered_intrahost() \T1/qtm/m/n/10 (\T1/q tm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 88--90 []\T1/txtt/m/n/10 add_report_node_demographics() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 90--92 []\T1/txtt/m/n/10 add_report_node_demographics_malaria() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (16.87178pt too wide) in paragraph at lines 92--94 []\T1/txtt/m/n/10 add_report_node_demographics_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 94--96 []\T1/txtt/m/n/10 add_report_vector_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 96--98 []\T1/txtt/m/n/10 add_report_vector_migration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 98--100 []\T1/txtt/m/n/10 add_report_vector_stats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/txtt/m/n/10 add_report_vector_stats_malaria_genetics() Underfull \hbox (badness 10000) in paragraph at lines 102--104 []\T1/txtt/m/n/10 add_rfMDA() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 102--104 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 add_rfMSAT() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 104--106 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 add_scale_larval_habitats() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Overfull \hbox (27.56747pt too wide) in paragraph at lines 106--108 \T1/qtm/m/it/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m/n/1 0 ), Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/txtt/m/n/10 add_scheduled_antimalarial_drug() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 110--112 []\T1/txtt/m/n/10 add_scheduled_input_eir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 110--112 \T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 112--114 []\T1/txtt/m/n/10 add_scheduled_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 114--116 []\T1/txtt/m/n/10 add_scheduled_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 114--116 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 116--118 []\T1/txtt/m/n/10 add_scheduled_mosquito_release() \T1/qtm/m/n/10 (\T1/qtm/m/it /10 in mod-ule Overfull \hbox (5.84247pt too wide) in paragraph at lines 116--118 \T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 118--120 []\T1/txtt/m/n/10 add_scheduled_space_spraying() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 118--120 \T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/txtt/m/n/10 add_scheduled_sugar_trap() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 120--122 \T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 add_scheduled_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 122--124 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/txtt/m/n/10 add_scheduled_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/txtt/m/n/10 add_species() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 132--134 []\T1/txtt/m/n/10 add_species_drivers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/txtt/m/n/10 add_sql_report_malaria() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/txtt/m/n/10 add_sql_report_malaria_genetics() \T1/qtm/m/n/10 (\T1/qtm/m/i t/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 138--139 []\T1/txtt/m/n/10 add_trait() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 139--141 []\T1/txtt/m/n/10 add_treatment_seeking() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Overfull \hbox (13.81248pt too wide) in paragraph at lines 139--141 \T1/qtm/m/it/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 141--143 \T1/qtm/m/it/10 ule emodpy_malaria.interventions.common\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 143--145 []\T1/txtt/m/n/10 add_triggered_irs_housing_modification() \T1/qtm/m/n/10 (\T1/ qtm/m/it/10 in Underfull \hbox (badness 10000) in paragraph at lines 145--147 []\T1/txtt/m/n/10 add_triggered_ivermectin() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 145--147 \T1/qtm/m/it/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 147--149 []\T1/txtt/m/n/10 add_triggered_usage_dependent_bednet() \T1/qtm/m/n/10 (\T1/qt m/m/it/10 in Overfull \hbox (72.8525pt too wide) in paragraph at lines 147--149 \T1/qtm/m/it/10 mod-ule emodpy_malaria.interventions.usage_dependent_bednet\T1/ qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 149--151 []\T1/txtt/m/n/10 add_triggered_vaccine() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule Underfull \hbox (badness 10000) in paragraph at lines 149--151 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 151--153 []\T1/txtt/m/n/10 add_vector_habitat_report() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 153--155 []\T1/txtt/m/n/10 adherent_drug() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 153--155 \T1/qtm/m/it/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 ), Overfull \hbox (97.69139pt too wide) in paragraph at lines 155--157 []\T1/txtt/m/n/10 AIR_TEMPERATURE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_variable.WeatherVariable Underfull \hbox (badness 10000) in paragraph at lines 157--159 []\T1/txtt/m/n/10 all_vectors_if_none() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule Overfull \hbox (79.26231pt too wide) in paragraph at lines 159--161 []\T1/txtt/m/n/10 attributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherMetadata Overfull \hbox (27.04231pt too wide) in paragraph at lines 161--163 []\T1/txtt/m/n/10 attributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Overfull \hbox (106.63223pt too wide) in paragraph at lines 163--165 []\T1/txtt/m/n/10 attributes_dict \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_metadata.WeatherAttributes Overfull \hbox (59.38237pt too wide) in paragraph at lines 165--167 []\T1/txtt/m/n/10 author \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_metadata.WeatherAttributes [126] Underfull \hbox (badness 10000) in paragraph at lines 170--172 []\T1/txtt/m/n/10 check_vectors() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (52.95236pt too wide) in paragraph at lines 172--174 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaImmunityReport Overfull \hbox (66.65236pt too wide) in paragraph at lines 174--176 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaPatientJSONReport Overfull \hbox (53.25237pt too wide) in paragraph at lines 176--178 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSummaryReport Overfull \hbox (73.90236pt too wide) in paragraph at lines 178--180 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (27.91235pt too wide) in paragraph at lines 180--182 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportDrugStatus Overfull \hbox (37.50235pt too wide) in paragraph at lines 182--184 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportEventCounter Overfull \hbox (123.31236pt too wide) in paragraph at lines 184--186 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportFpgOutputForObservationalModel Overfull \hbox (86.26233pt too wide) in paragraph at lines 186--188 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportHumanMigrationTracking Overfull \hbox (69.73235pt too wide) in paragraph at lines 188--190 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportInfectionStatsMalaria Overfull \hbox (61.24232pt too wide) in paragraph at lines 190--192 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportInterventionPopAvg Overfull \hbox (46.60233pt too wide) in paragraph at lines 192--194 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportMalariaFiltered Overfull \hbox (85.14232pt too wide) in paragraph at lines 194--196 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportMalariaFilteredIntraHost Overfull \hbox (61.69237pt too wide) in paragraph at lines 196--198 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportNodeDemographics Overfull \hbox (94.47237pt too wide) in paragraph at lines 198--200 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportNodeDemographicsMalaria Overfull \hbox (129.31238pt too wide) in paragraph at lines 200--202 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (95.20233pt too wide) in paragraph at lines 202--204 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportSimpleMalariaTransmission Overfull \hbox (43.05237pt too wide) in paragraph at lines 204--206 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorGenetics Overfull \hbox (48.32236pt too wide) in paragraph at lines 206--208 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorMigration Overfull \hbox (27.51236pt too wide) in paragraph at lines 208--210 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorStats Overfull \hbox (95.13237pt too wide) in paragraph at lines 210--212 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.ReportVectorStatsMalariaGenetics Overfull \hbox (74.94232pt too wide) in paragraph at lines 212--214 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.SpatialReportMalariaFiltered Overfull \hbox (27.96236pt too wide) in paragraph at lines 214--216 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.SqlReportMalaria Overfull \hbox (62.80237pt too wide) in paragraph at lines 216--218 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.SqlReportMalariaGenetics Overfull \hbox (38.77235pt too wide) in paragraph at lines 218--220 []\T1/txtt/m/n/10 config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.repor ters.builtin.VectorHabitatReport Underfull \hbox (badness 10000) in paragraph at lines 220--222 []\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 222--224 []\T1/txtt/m/n/10 configure_linear_spline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 224--225 []\T1/txtt/m/n/10 csv_to_weather() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (10.29239pt too wide) in paragraph at lines 228--230 []\T1/txtt/m/n/10 data \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w eather_data.WeatherData Overfull \hbox (48.51231pt too wide) in paragraph at lines 230--232 []\T1/txtt/m/n/10 data_id \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weathe r.weather_request.WeatherRequest Overfull \hbox (80.38231pt too wide) in paragraph at lines 232--234 []\T1/txtt/m/n/10 data_years \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherAttributes Underfull \hbox (badness 10000) in paragraph at lines 234--236 []\T1/txtt/m/n/10 DataFrameInfo \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 234--236 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_data\T1/qtm/m/n/10 ), Overfull \hbox (34.68227pt too wide) in paragraph at lines 236--238 []\T1/txtt/m/n/10 DataSource \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emodpy_ma laria.weather.weather_request\T1/qtm/m/n/10 ), Overfull \hbox (105.51224pt too wide) in paragraph at lines 238--240 []\T1/txtt/m/n/10 datavalue_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_metadata.WeatherMetadata Overfull \hbox (90.88228pt too wide) in paragraph at lines 240--242 []\T1/txtt/m/n/10 date_created \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherAttributes Overfull \hbox (81.83218pt too wide) in paragraph at lines 242--244 []\T1/txtt/m/n/10 detect_columns() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_data.DataFrameInfo Overfull \hbox (16.54234pt too wide) in paragraph at lines 244--246 []\T1/txtt/m/n/10 dir_path \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_set.WeatherSet Overfull \hbox (47.7523pt too wide) in paragraph at lines 246--248 []\T1/txtt/m/n/10 download \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_request.RequestReport Overfull \hbox (64.26227pt too wide) in paragraph at lines 248--250 []\T1/txtt/m/n/10 download() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_request.WeatherRequest Underfull \hbox (badness 10000) in paragraph at lines 250--252 []\T1/txtt/m/n/10 drug_configs_from_code() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in m od-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 250--252 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Overfull \hbox (16.87178pt too wide) in paragraph at lines 259--260 []\T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics Overfull \hbox (43.1217pt too wide) in paragraph at lines 269--270 []\T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker [127] Overfull \hbox (1.12183pt too wide) in paragraph at lines 285--286 []\T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease Overfull \hbox (1.12183pt too wide) in paragraph at lines 289--290 []\T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill Overfull \hbox (32.62173pt too wide) in paragraph at lines 291--292 []\T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats Overfull \hbox (11.6218pt too wide) in paragraph at lines 297--298 []\T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking Overfull \hbox (37.87172pt too wide) in paragraph at lines 299--300 []\T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet Overfull \hbox (1.12183pt too wide) in paragraph at lines 305--306 []\T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params Overfull \hbox (27.04231pt too wide) in paragraph at lines 332--334 []\T1/txtt/m/n/10 file_names \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Overfull \hbox (52.54227pt too wide) in paragraph at lines 334--336 []\T1/txtt/m/n/10 file_prefix \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_request.DataSource Overfull \hbox (38.01234pt too wide) in paragraph at lines 336--338 []\T1/txtt/m/n/10 files \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather. weather_request.WeatherRequest Overfull \hbox (69.51225pt too wide) in paragraph at lines 338--340 []\T1/txtt/m/n/10 files_exist \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_request.WeatherRequest Underfull \hbox (badness 10000) in paragraph at lines 340--342 []\T1/txtt/m/n/10 fmda_cfg() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (4.22249pt too wide) in paragraph at lines 340--342 \T1/qtm/m/it/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 342--344 []\T1/txtt/m/n/10 format_create_date() Overfull \hbox (66.21246pt too wide) in paragraph at lines 342--344 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather Attributes Overfull \hbox (41.7923pt too wide) in paragraph at lines 344--346 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_data.WeatherData Overfull \hbox (27.04231pt too wide) in paragraph at lines 346--348 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 348--350 []\T1/txtt/m/n/10 from_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.1975pt too wide) in paragraph at lines 348--350 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Overfull \hbox (73.2922pt too wide) in paragraph at lines 350--352 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_data.WeatherData Overfull \hbox (58.54222pt too wide) in paragraph at lines 352--354 []\T1/txtt/m/n/10 from_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_set.WeatherSet Overfull \hbox (47.04228pt too wide) in paragraph at lines 354--356 []\T1/txtt/m/n/10 from_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.WeatherData Overfull \hbox (47.04228pt too wide) in paragraph at lines 356--358 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.WeatherData Overfull \hbox (84.5123pt too wide) in paragraph at lines 358--360 []\T1/txtt/m/n/10 from_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_metadata.WeatherMetadata Overfull \hbox (37.54228pt too wide) in paragraph at lines 360--362 []\T1/txtt/m/n/10 from_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 362--364 []\T1/txtt/m/n/10 from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.1975pt too wide) in paragraph at lines 362--364 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 364--366 []\T1/txtt/m/n/10 from_pop_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (36.1975pt too wide) in paragraph at lines 364--366 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 from_template_node() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Overfull \hbox (36.1975pt too wide) in paragraph at lines 366--368 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Overfull \hbox (64.26227pt too wide) in paragraph at lines 371--373 []\T1/txtt/m/n/10 generate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_request.WeatherRequest Underfull \hbox (badness 10000) in paragraph at lines 373--374 []\T1/txtt/m/n/10 generate_weather() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 374--376 []\T1/txtt/m/n/10 get_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 376--378 []\T1/txtt/m/n/10 get_file_from_http() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le [128] Underfull \hbox (badness 10000) in paragraph at lines 378--380 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 380--382 []\T1/txtt/m/n/10 get_species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 385--387 []\T1/txtt/m/n/10 hash_series() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 385--387 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Overfull \hbox (90.88228pt too wide) in paragraph at lines 390--392 []\T1/txtt/m/n/10 id_reference \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherAttributes Underfull \hbox (badness 10000) in paragraph at lines 392--394 []\T1/txtt/m/n/10 invert_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 392--394 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 394--396 []\T1/txtt/m/n/10 irs_configuration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Overfull \hbox (11.29236pt too wide) in paragraph at lines 396--398 []\T1/txtt/m/n/10 items() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weathe r.weather_set.WeatherSet Overfull \hbox (6.04237pt too wide) in paragraph at lines 401--403 []\T1/txtt/m/n/10 keys() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_set.WeatherSet Overfull \hbox (102.94138pt too wide) in paragraph at lines 406--408 []\T1/txtt/m/n/10 LAND_TEMPERATURE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_variable.WeatherVariable Overfull \hbox (50.44235pt too wide) in paragraph at lines 408--410 []\T1/txtt/m/n/10 list() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_variable.WeatherVariable Overfull \hbox (59.01228pt too wide) in paragraph at lines 410--412 []\T1/txtt/m/n/10 local_dir \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat her.weather_request.WeatherRequest Overfull \hbox (63.7922pt too wide) in paragraph at lines 415--417 []\T1/txtt/m/n/10 make_file_paths() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 417--419 []\T1/txtt/m/n/10 make_path() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 417--419 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 419--421 []\T1/txtt/m/n/10 MalariaDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (36.1975pt too wide) in paragraph at lines 419--421 \T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 421--423 []\T1/txtt/m/n/10 MalariaImmunityReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 423--425 []\T1/txtt/m/n/10 MalariaPatientJSONReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas s in Underfull \hbox (badness 10000) in paragraph at lines 425--427 []\T1/txtt/m/n/10 MalariaSummaryReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 427--429 []\T1/txtt/m/n/10 MalariaSurveyJSONAnalyzer \T1/qtm/m/n/10 (\T1/qtm/m/it/10 cla ss in Overfull \hbox (31.29233pt too wide) in paragraph at lines 429--431 []\T1/txtt/m/n/10 metadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_data.WeatherData Underfull \hbox (badness 10000) in paragraph at lines 431--433 []\T1/txtt/m/n/10 metadata_defaults_dict() Overfull \hbox (66.21246pt too wide) in paragraph at lines 431--433 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather Attributes Overfull \hbox (39.37178pt too wide) in paragraph at lines 436--437 []| \T1/txtt/m/n/10 emodpy_malaria.demographics.MalariaDemographics\T1/qtm/m/n/ 10 , Overfull \hbox (7.87187pt too wide) in paragraph at lines 438--439 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.adherentdrug\T1/qtm/m/n/10 , Overfull \hbox (65.6217pt too wide) in paragraph at lines 441--442 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.community_health_worker\T1/qtm /m/n/10 , Overfull \hbox (2.62189pt too wide) in paragraph at lines 442--443 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.diag_survey\T1/qtm/m/n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 444--445 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.drug_campaign\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 447--448 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.ivermectin\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 448--449 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 449--450 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 451--452 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.outdoorrestkill\T1/qtm/m/n/10 , Overfull \hbox (55.12173pt too wide) in paragraph at lines 452--453 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.scale_larval_habitats\T1/qtm/m /n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 453--454 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 454--455 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 , Overfull \hbox (34.1218pt too wide) in paragraph at lines 455--456 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.treatment_seeking\T1/qtm/m/n/1 0 , Overfull \hbox (60.37172pt too wide) in paragraph at lines 456--457 []| \T1/txtt/m/n/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/ m/n/10 , Overfull \hbox (23.62183pt too wide) in paragraph at lines 459--460 []| \T1/txtt/m/n/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 466--467 []| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 467--468 []| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_request\T1/qtm/m/n/10 , [129] Underfull \hbox (badness 10000) in paragraph at lines 470--471 []| \T1/txtt/m/n/10 emodpy_malaria.weather.weather_variable\T1/qtm/m/n/10 , Overfull \hbox (15.79237pt too wide) in paragraph at lines 474--476 []\T1/txtt/m/n/10 name \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w eather_request.DataSource Underfull \hbox (badness 10000) in paragraph at lines 476--478 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 478--480 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 480--482 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 480--482 \T1/qtm/m/it/10 emodpy_malaria.interventions.inputeir\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 482--484 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 484--486 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 484--486 \T1/qtm/m/it/10 emodpy_malaria.interventions.larvicide\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 486--488 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (5.84247pt too wide) in paragraph at lines 486--488 \T1/qtm/m/it/10 emodpy_malaria.interventions.mosquitorelease\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 488--490 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 488--490 \T1/qtm/m/it/10 emodpy_malaria.interventions.spacespraying\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 490--492 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 490--492 \T1/qtm/m/it/10 emodpy_malaria.interventions.sugartrap\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 492--494 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (41.7425pt too wide) in paragraph at lines 492--494 \T1/qtm/m/it/10 emodpy_malaria.interventions.usage_dependent_bednet\T1/qtm/m/n/ 10 ), Underfull \hbox (badness 10000) in paragraph at lines 494--496 []\T1/txtt/m/n/10 new_intervention_as_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 494--496 \T1/qtm/m/it/10 emodpy_malaria.interventions.vaccine\T1/qtm/m/n/10 ), Overfull \hbox (55.58226pt too wide) in paragraph at lines 496--498 []\T1/txtt/m/n/10 node_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.DataFrameInfo Overfull \hbox (79.26231pt too wide) in paragraph at lines 498--500 []\T1/txtt/m/n/10 node_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherMetadata Overfull \hbox (105.51224pt too wide) in paragraph at lines 500--502 []\T1/txtt/m/n/10 node_offset_str \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_metadata.WeatherMetadata Overfull \hbox (89.76228pt too wide) in paragraph at lines 502--504 []\T1/txtt/m/n/10 node_offsets \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherMetadata Overfull \hbox (53.01239pt too wide) in paragraph at lines 504--506 []\T1/txtt/m/n/10 nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather. weather_metadata.WeatherMetadata Overfull \hbox (89.76228pt too wide) in paragraph at lines 509--511 []\T1/txtt/m/n/10 offset_nodes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherMetadata Overfull \hbox (63.45233pt too wide) in paragraph at lines 514--516 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaImmunityReport Overfull \hbox (77.15233pt too wide) in paragraph at lines 516--518 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaPatientJSONReport Overfull \hbox (63.75233pt too wide) in paragraph at lines 518--520 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaSummaryReport Overfull \hbox (84.40233pt too wide) in paragraph at lines 520--522 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.MalariaSurveyJSONAnalyzer Overfull \hbox (38.41232pt too wide) in paragraph at lines 522--524 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportDrugStatus Overfull \hbox (48.00232pt too wide) in paragraph at lines 524--526 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportEventCounter Overfull \hbox (133.81233pt too wide) in paragraph at lines 526--528 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportFpgOutputForObservationalModel Overfull \hbox (96.7623pt too wide) in paragraph at lines 528--530 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportHumanMigrationTracking Overfull \hbox (80.23232pt too wide) in paragraph at lines 530--532 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportInfectionStatsMalaria Overfull \hbox (71.7423pt too wide) in paragraph at lines 532--534 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportInterventionPopAvg Overfull \hbox (57.1023pt too wide) in paragraph at lines 534--536 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportMalariaFiltered Overfull \hbox (95.64229pt too wide) in paragraph at lines 536--538 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportMalariaFilteredIntraHost Overfull \hbox (72.19234pt too wide) in paragraph at lines 538--540 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographics Overfull \hbox (104.97234pt too wide) in paragraph at lines 540--542 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographicsMalaria Overfull \hbox (139.81235pt too wide) in paragraph at lines 542--544 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportNodeDemographicsMalariaGenetics Overfull \hbox (105.7023pt too wide) in paragraph at lines 544--546 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportSimpleMalariaTransmission Overfull \hbox (53.55234pt too wide) in paragraph at lines 546--548 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportVectorGenetics Overfull \hbox (58.82233pt too wide) in paragraph at lines 548--550 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportVectorMigration Overfull \hbox (38.01233pt too wide) in paragraph at lines 550--552 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportVectorStats Overfull \hbox (105.63234pt too wide) in paragraph at lines 552--554 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.ReportVectorStatsMalariaGenetics Overfull \hbox (85.44229pt too wide) in paragraph at lines 554--556 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.SpatialReportMalariaFiltered Overfull \hbox (38.46233pt too wide) in paragraph at lines 556--558 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.SqlReportMalaria Overfull \hbox (73.30234pt too wide) in paragraph at lines 558--560 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.SqlReportMalariaGenetics Overfull \hbox (49.27232pt too wide) in paragraph at lines 560--562 []\T1/txtt/m/n/10 parameters \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.rep orters.builtin.VectorHabitatReport Underfull \hbox (badness 10000) in paragraph at lines 562--564 []\T1/txtt/m/n/10 parse_date() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 562--564 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Overfull \hbox (80.38231pt too wide) in paragraph at lines 564--566 []\T1/txtt/m/n/10 provenance \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherAttributes Overfull \hbox (60.9415pt too wide) in paragraph at lines 569--571 []\T1/txtt/m/n/10 RAINFALL \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_variable.WeatherVariable [130] Overfull \hbox (108.19136pt too wide) in paragraph at lines 571--573 []\T1/txtt/m/n/10 RELATIVE_HUMIDITY \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_variable.WeatherVariable Overfull \hbox (43.26233pt too wide) in paragraph at lines 573--575 []\T1/txtt/m/n/10 report \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather .weather_request.WeatherRequest Underfull \hbox (badness 10000) in paragraph at lines 575--577 []\T1/txtt/m/n/10 ReportDrugStatus \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 577--579 []\T1/txtt/m/n/10 ReportEventCounter \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 581--583 []\T1/txtt/m/n/10 ReportHumanMigrationTracking \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 583--585 []\T1/txtt/m/n/10 ReportInfectionStatsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 c lass in Underfull \hbox (badness 10000) in paragraph at lines 585--587 []\T1/txtt/m/n/10 ReportInterventionPopAvg \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas s in Underfull \hbox (badness 10000) in paragraph at lines 587--589 []\T1/txtt/m/n/10 ReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 589--591 []\T1/txtt/m/n/10 ReportMalariaFilteredIntraHost \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 class in Underfull \hbox (badness 10000) in paragraph at lines 591--593 []\T1/txtt/m/n/10 ReportNodeDemographics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 593--595 []\T1/txtt/m/n/10 ReportNodeDemographicsMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 597--599 []\T1/txtt/m/n/10 ReportSimpleMalariaTransmission \T1/qtm/m/n/10 (\T1/qtm/m/it/ 10 class in Underfull \hbox (badness 10000) in paragraph at lines 599--601 []\T1/txtt/m/n/10 ReportVectorGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 601--603 []\T1/txtt/m/n/10 ReportVectorMigration \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class i n Underfull \hbox (badness 10000) in paragraph at lines 603--605 []\T1/txtt/m/n/10 ReportVectorStats \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 605--607 []\T1/txtt/m/n/10 ReportVectorStatsMalariaGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it /10 class in Underfull \hbox (badness 10000) in paragraph at lines 607--609 []\T1/txtt/m/n/10 RequestReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 609--611 []\T1/txtt/m/n/10 required_metadata_defaults_dict() Overfull \hbox (66.21246pt too wide) in paragraph at lines 609--611 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather Attributes Underfull \hbox (badness 10000) in paragraph at lines 614--616 []\T1/txtt/m/n/10 save_json() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 614--616 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 616--618 []\T1/txtt/m/n/10 select_weather_files() Overfull \hbox (12.87247pt too wide) in paragraph at lines 616--618 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_set.WeatherSet Overfull \hbox (89.76228pt too wide) in paragraph at lines 618--620 []\T1/txtt/m/n/10 series_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_metadata.WeatherMetadata Overfull \hbox (79.26231pt too wide) in paragraph at lines 620--622 []\T1/txtt/m/n/10 series_len \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherMetadata Underfull \hbox (badness 10000) in paragraph at lines 622--624 []\T1/txtt/m/n/10 series_unique_count Overfull \hbox (65.09247pt too wide) in paragraph at lines 622--624 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata.Weather Metadata Underfull \hbox (badness 10000) in paragraph at lines 624--626 []\T1/txtt/m/n/10 set_drug_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 626--628 []\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 628--630 []\T1/txtt/m/n/10 set_max_larval_capacity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 630--632 []\T1/txtt/m/n/10 set_parasite_genetics_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 in mod-ule Overfull \hbox (167.7723pt too wide) in paragraph at lines 632--634 []\T1/txtt/m/n/10 set_risk_high() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.demographics.MalariaDemographics.MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 634--636 []\T1/txtt/m/n/10 set_risk_lowmedium() Overfull \hbox (127.35252pt too wide) in paragraph at lines 634--636 \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.demographics.MalariaDemographics .MalariaDemographics Underfull \hbox (badness 10000) in paragraph at lines 636--638 []\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 638--640 []\T1/txtt/m/n/10 set_species_param() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 640--642 []\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 642--644 []\T1/txtt/m/n/10 set_team_defaults() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e Underfull \hbox (badness 10000) in paragraph at lines 644--646 []\T1/txtt/m/n/10 set_team_drug_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule Overfull \hbox (122.38219pt too wide) in paragraph at lines 646--648 []\T1/txtt/m/n/10 spatial_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mal aria.weather.weather_metadata.WeatherAttributes Underfull \hbox (badness 10000) in paragraph at lines 648--650 []\T1/txtt/m/n/10 SpatialReportMalariaFiltered \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 650--652 []\T1/txtt/m/n/10 species_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (16.16747pt too wide) in paragraph at lines 650--652 \T1/qtm/m/it/10 emodpy_malaria.malaria_vector_species_params\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 652--654 []\T1/txtt/m/n/10 SqlReportMalaria \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 654--656 []\T1/txtt/m/n/10 SqlReportMalariaGenetics \T1/qtm/m/n/10 (\T1/qtm/m/it/10 clas s in Overfull \hbox (55.58226pt too wide) in paragraph at lines 656--658 []\T1/txtt/m/n/10 step_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.we ather.weather_data.DataFrameInfo Overfull \hbox (31.29233pt too wide) in paragraph at lines 661--663 []\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_data.WeatherData Overfull \hbox (16.54234pt too wide) in paragraph at lines 663--665 []\T1/txtt/m/n/10 to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_set.WeatherSet Overfull \hbox (62.79224pt too wide) in paragraph at lines 665--667 []\T1/txtt/m/n/10 to_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria .weather.weather_data.WeatherData Overfull \hbox (48.04225pt too wide) in paragraph at lines 667--669 []\T1/txtt/m/n/10 to_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria .weather.weather_set.WeatherSet Overfull \hbox (36.54231pt too wide) in paragraph at lines 669--671 []\T1/txtt/m/n/10 to_dict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat her.weather_data.WeatherData Overfull \hbox (36.54231pt too wide) in paragraph at lines 671--673 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat her.weather_data.WeatherData Overfull \hbox (74.01233pt too wide) in paragraph at lines 673--675 []\T1/txtt/m/n/10 to_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weat her.weather_metadata.WeatherMetadata [131] Overfull \hbox (27.04231pt too wide) in paragraph at lines 675--677 []\T1/txtt/m/n/10 to_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Overfull \hbox (48.8824pt too wide) in paragraph at lines 677--679 []\T1/txtt/m/n/10 tool \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weather.w eather_metadata.WeatherAttributes Overfull \hbox (116.0122pt too wide) in paragraph at lines 679--681 []\T1/txtt/m/n/10 total_value_count \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_metadata.WeatherMetadata Overfull \hbox (69.88234pt too wide) in paragraph at lines 684--686 []\T1/txtt/m/n/10 update() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_metadata.WeatherAttributes Overfull \hbox (117.1322pt too wide) in paragraph at lines 686--688 []\T1/txtt/m/n/10 update_resolution \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_metadata.WeatherAttributes Overfull \hbox (41.7923pt too wide) in paragraph at lines 691--693 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_data.WeatherData Overfull \hbox (80.38231pt too wide) in paragraph at lines 693--695 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherAttributes Overfull \hbox (79.26231pt too wide) in paragraph at lines 695--697 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_metadata.WeatherMetadata Overfull \hbox (51.64227pt too wide) in paragraph at lines 697--699 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_request.WeatherArgs Overfull \hbox (27.04231pt too wide) in paragraph at lines 699--701 []\T1/txtt/m/n/10 validate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.wea ther.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 701--703 []\T1/txtt/m/n/10 validate_str_value() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le Underfull \hbox (badness 10000) in paragraph at lines 701--703 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_utils\T1/qtm/m/n/10 ), Overfull \hbox (102.9422pt too wide) in paragraph at lines 703--705 []\T1/txtt/m/n/10 validate_types() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malar ia.weather.weather_variable.WeatherVariable Overfull \hbox (60.83224pt too wide) in paragraph at lines 705--707 []\T1/txtt/m/n/10 value_column \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.w eather.weather_data.DataFrameInfo Overfull \hbox (16.54234pt too wide) in paragraph at lines 707--709 []\T1/txtt/m/n/10 values() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malaria.weath er.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 709--711 []\T1/txtt/m/n/10 VectorHabitatReport \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (53.29224pt too wide) in paragraph at lines 714--716 []\T1/txtt/m/n/10 weather_columns \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_malari a.weather.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 716--717 []\T1/txtt/m/n/10 weather_to_csv() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Overfull \hbox (84.04218pt too wide) in paragraph at lines 717--719 []\T1/txtt/m/n/10 weather_variables \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_request.DataSource Overfull \hbox (63.7922pt too wide) in paragraph at lines 719--721 []\T1/txtt/m/n/10 weather_variables \T1/qtm/m/n/10 (\T1/qtm/m/it/10 emodpy_mala ria.weather.weather_set.WeatherSet Underfull \hbox (badness 10000) in paragraph at lines 721--723 []\T1/txtt/m/n/10 WeatherArgs \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 723--725 []\T1/txtt/m/n/10 WeatherAttributes \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 723--725 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 725--727 []\T1/txtt/m/n/10 WeatherData \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 725--727 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_data\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 727--729 []\T1/txtt/m/n/10 WeatherMetadata \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 727--729 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_metadata\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 729--731 []\T1/txtt/m/n/10 WeatherRequest \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (16.7023pt too wide) in paragraph at lines 731--733 []\T1/txtt/m/n/10 WeatherSet \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in emodpy_ma laria.weather.weather_set\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 733--735 []\T1/txtt/m/n/10 WeatherVariable \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 733--735 \T1/qtm/m/it/10 emodpy_malaria.weather.weather_variable\T1/qtm/m/n/10 ), Overfull \hbox (5.75735pt too wide) in paragraph at lines 738--739 []\T1/txtt/m/n/10 ymd() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule emodpy_malar ia.weather.weather_utils\T1/qtm/m/n/10 ), [132]) (./institute-for-disease-modeling-emodpy-malaria.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r .enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc} Output written on institute-for-disease-modeling-emodpy-malaria.pdf (136 pages, 573227 bytes). Transcript written on institute-for-disease-modeling-emodpy-malaria.log. Latexmk: Index file 'institute-for-disease-modeling-emodpy-malaria.idx' was written Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-emodpy-malaria.pdf' Latexmk: All targets (institute-for-disease-modeling-emodpy-malaria.pdf) are up-to-date