Read the Docs build information
Build id: 1383828
Project: icb-anndata
Version: 947
Commit: 0e45fa69ddfa09812b838da249e1698bd520d9ab
Date: 2023-03-30T11:09:27.717725Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2023-03-30T11:09:29.585776Z, end-time: 2023-03-30T11:09:34.584353Z, duration: 4, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/scverse/anndata.git .
Cloning into '.'...

[rtd-command-info] start-time: 2023-03-30T11:09:34.979691Z, end-time: 2023-03-30T11:09:35.557649Z, duration: 0, exit-code: 0
git fetch origin --force --tags --prune --prune-tags --depth 50 pull/947/head:external-947
From https://github.com/scverse/anndata
 * [new ref]         refs/pull/947/head -> external-947

[rtd-command-info] start-time: 2023-03-30T11:09:35.751073Z, end-time: 2023-03-30T11:09:35.854820Z, duration: 0, exit-code: 0
git checkout --force 0e45fa69ddfa09812b838da249e1698bd520d9ab
Note: switching to '0e45fa69ddfa09812b838da249e1698bd520d9ab'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 0e45fa6 (feat): add some checks.

[rtd-command-info] start-time: 2023-03-30T11:09:36.087024Z, end-time: 2023-03-30T11:09:36.154951Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-03-30T11:09:36.349102Z, end-time: 2023-03-30T11:09:37.045571Z, duration: 0, exit-code: 0
git submodule sync


[rtd-command-info] start-time: 2023-03-30T11:09:37.232045Z, end-time: 2023-03-30T11:09:37.787656Z, duration: 0, exit-code: 0
git submodule update --init --force --recursive docs/tutorials/notebooks
Submodule 'docs/tutorials/notebooks' (https://github.com/scverse/anndata-tutorials) registered for path 'docs/tutorials/notebooks'
Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/947/docs/tutorials/notebooks'...
Submodule path 'docs/tutorials/notebooks': checked out '9e186c5c694793bb04ea1397721d154d6e0b7069'

[rtd-command-info] start-time: 2023-03-30T11:09:43.377865Z, end-time: 2023-03-30T11:09:43.958478Z, duration: 0, exit-code: 0
asdf global python 3.10.8


[rtd-command-info] start-time: 2023-03-30T11:09:44.778337Z, end-time: 2023-03-30T11:09:45.935810Z, duration: 1, exit-code: 0
python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.10.8.final.0-64 in 711ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/947, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==21.2.3, setuptools==57.4.0, wheel==0.37.0
  activators BashActivator,CShellActivator,FishActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2023-03-30T11:09:46.143285Z, end-time: 2023-03-30T11:09:59.387120Z, duration: 13, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/947/lib/python3.10/site-packages (21.2.3)
Collecting pip
  Downloading pip-23.0.1-py3-none-any.whl (2.1 MB)
Requirement already satisfied: setuptools<58.3.0 in /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/envs/947/lib/python3.10/site-packages (57.4.0)
Collecting setuptools<58.3.0
  Downloading setuptools-58.2.0-py3-none-any.whl (946 kB)
Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 57.4.0
    Uninstalling setuptools-57.4.0:
      Successfully uninstalled setuptools-57.4.0
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-23.0.1 setuptools-58.2.0

[rtd-command-info] start-time: 2023-03-30T11:09:59.575334Z, end-time: 2023-03-30T11:10:10.127520Z, duration: 10, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0
Collecting pillow
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  Preparing metadata (setup.py): started
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Collecting Pygments>=2.0
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Collecting MarkupSafe>=2.0
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Building wheels for collected packages: mock
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=d69c7b76faef38fb9e9b5410bb17506c7fd218cef84ad6d81730e3f230edf688
  Stored in directory: /tmp/pip-ephem-wheel-cache-hjdnao8r/wheels/df/9a/50/99d488b71fc0b027f0d316f4e447cdc9b973c67e1e7e4abc4b
Successfully built mock
Installing collected packages: snowballstemmer, mock, commonmark, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed MarkupSafe-2.1.2 Pygments-2.14.0 alabaster-0.7.13 babel-2.12.1 certifi-2022.12.7 charset-normalizer-3.1.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.0 pillow-9.4.0 readthedocs-sphinx-ext-2.2.0 recommonmark-0.5.0 requests-2.28.2 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.15