Read the Docs build information Build id: 1342280 Project: tiledb-inc-tiledb-py Version: stable Commit: 95df74fc53b2a4125bf54db25d51a050f76a9f36 Date: 2023-03-10T04:02:08.241206Z State: finished Success: True [rtd-command-info] start-time: 2023-03-10T04:02:10.103309Z, end-time: 2023-03-10T04:02:12.368546Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2023-03-10T04:02:12.577825Z, end-time: 2023-03-10T04:02:12.674999Z, duration: 0, exit-code: 0 git checkout --force 95df74fc53b2a4125bf54db25d51a050f76a9f36 Note: switching to '95df74fc53b2a4125bf54db25d51a050f76a9f36'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 95df74f TMP testing tiledb df621f5ad6b7b416ef8db10e663f593ad7fd3922 [rtd-command-info] start-time: 2023-03-10T04:02:12.922279Z, end-time: 2023-03-10T04:02:12.994816Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-03-10T04:02:14.022272Z, end-time: 2023-03-10T04:02:28.693268Z, duration: 14, exit-code: 0 python3.7 -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2023-03-10T04:02:28.892939Z, end-time: 2023-03-10T04:02:30.821055Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (23.0.1) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 26.5 MB/s eta 0:00:00 Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 67.6.0 Uninstalling setuptools-67.6.0: Successfully uninstalled setuptools-67.6.0 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2023-03-10T04:02:31.009325Z, end-time: 2023-03-10T04:02:37.791145Z, duration: 6, exit-code: 0 python -m pip install --upgrade --no-cache-dir pillow==5.4.1 mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0 Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 34.9 MB/s eta 0:00:00 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 246.2 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl (13 kB) Collecting commonmark==0.9.1 Downloading commonmark-0.9.1-py2.py3-none-any.whl (51 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 51.1/51.1 kB 170.2 MB/s eta 0:00:00 Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 179.8 MB/s eta 0:00:00 Collecting 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imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting MarkupSafe>=2.0 Downloading MarkupSafe-2.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting pytz>=2015.7 Downloading pytz-2022.7.1-py2.py3-none-any.whl (499 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 499.4/499.4 kB 234.4 MB/s eta 0:00:00 Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.14-py2.py3-none-any.whl (140 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 140.6/140.6 kB 218.8 MB/s eta 0:00:00 Collecting certifi>=2017.4.17 Downloading certifi-2022.12.7-py3-none-any.whl (155 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 155.3/155.3 kB 209.7 MB/s eta 0:00:00 Collecting idna<4,>=2.5 Downloading idna-3.4-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 186.9 MB/s eta 0:00:00 Collecting charset-normalizer<4,>=2 Downloading charset_normalizer-3.1.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (171 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 171.0/171.0 kB 217.8 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Successfully installed MarkupSafe-2.1.2 Pygments-2.14.0 alabaster-0.7.13 babel-2.12.1 certifi-2022.12.7 charset-normalizer-3.1.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.0 pillow-5.4.1 pytz-2022.7.1 readthedocs-sphinx-ext-2.2.0 recommonmark-0.5.0 requests-2.28.2 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.14 [rtd-command-info] start-time: 2023-03-10T04:02:37.973460Z, end-time: 2023-03-10T04:02:45.546169Z, duration: 7, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r doc/requirements_doc.txt Ignoring contextvars: markers 'python_version < "3.7"' don't match your environment Ignoring dataclasses: markers 'python_version < "3.7"' don't match your environment Requirement already satisfied: docutils<0.18 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r doc/requirements_doc.txt (line 1)) (0.17.1) Collecting jinja2==3.0.0 Downloading Jinja2-3.0.0-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.4/133.4 kB 6.4 MB/s eta 0:00:00 Collecting numpy>=1.16.5 Downloading numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 15.7/15.7 MB 165.0 MB/s eta 0:00:00 Collecting cmake<3.22,>=3.21 Downloading cmake-3.21.4-py2.py3-none-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (21.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 21.5/21.5 MB 173.7 MB/s eta 0:00:00 Collecting cython>=0.27 Downloading Cython-0.29.33-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (1.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.9/1.9 MB 87.0 MB/s eta 0:00:00 Collecting pybind11>=2.6.2 Downloading pybind11-2.10.3-py3-none-any.whl (222 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jinja2-3.0.0 mypy-extensions-1.0.0 numpy-1.21.6 pathspec-0.11.0 platformdirs-3.1.0 pybind11-2.10.3 setuptools_scm-7.1.0 tomli-2.0.1 typed-ast-1.5.4 typing-extensions-4.5.0 zipp-3.15.0 [rtd-command-info] start-time: 2023-03-10T04:02:45.723881Z, end-time: 2023-03-10T04:21:13.809003Z, duration: 1108, exit-code: 0 python ./setup.py install --force TILEDB_PATH from env: '' libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project -- Could NOT find spdlog (missing: spdlog_DIR) -- Adding spdlog as an external project -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Zlib, adding imported target: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project -- Adding Magic as an external project -- Could NOT find CapnProto (missing: CapnProto_DIR) -- Cap'n Proto was not found -- Adding Capnp as an external project -- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR: Found unsuitable version "1.0.2n", but required is at least "1.1.0" (found /usr/lib/x86_64-linux-gnu/libcrypto.so, ) -- Adding OpenSSL as an external project -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") CMake Warning at cmake/Modules/FindCurl_EP.cmake:127 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:100 (include) CMakeLists.txt:186 (include) -- Could NOT find AWSSDK (missing: AWSSDK_DIR) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project -- Not found clang-tidy -- Not found clang-format -- clang hunt, found /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build [ 2%] Creating directories for 'ep_capnp' [ 2%] Creating directories for 'ep_openssl' [ 5%] Performing download step (download, verify and extract) for 'ep_capnp' [ 5%] Performing download step (download, verify and extract) for 'ep_openssl' -- ep_capnp download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_capnp-stamp/ep_capnp-download-*.log [ 6%] No update step for 'ep_capnp' [ 8%] No patch step for 'ep_capnp' [ 9%] Performing configure step for 'ep_capnp' -- ep_capnp configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_capnp-stamp/ep_capnp-configure-*.log [ 11%] Performing build step for 'ep_capnp' -- ep_openssl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_openssl-stamp/ep_openssl-download-*.log [ 12%] No update step for 'ep_openssl' [ 13%] No patch step for 'ep_openssl' [ 15%] Performing configure step for 'ep_openssl' -- ep_openssl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_openssl-stamp/ep_openssl-configure-*.log [ 16%] Performing build step for 'ep_openssl' -- ep_capnp build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_capnp-stamp/ep_capnp-build-*.log [ 18%] Performing install step for 'ep_capnp' -- ep_capnp install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_capnp-stamp/ep_capnp-install-*.log [ 19%] Completed 'ep_capnp' [ 19%] Built target ep_capnp [ 20%] Creating directories for 'ep_spdlog' [ 22%] Performing download step (download, verify and extract) for 'ep_spdlog' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 23%] No update step for 'ep_spdlog' [ 25%] Performing patch step for 'ep_spdlog' patching file include/spdlog/logger-inl.h [ 26%] Performing configure step for 'ep_spdlog' -- ep_spdlog configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_spdlog-stamp/ep_spdlog-configure-*.log [ 27%] Performing build step for 'ep_spdlog' -- ep_openssl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_openssl-stamp/ep_openssl-build-*.log [ 29%] Performing install step for 'ep_openssl' -- ep_spdlog build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_spdlog-stamp/ep_spdlog-build-*.log [ 30%] Performing install step for 'ep_spdlog' -- ep_spdlog install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_spdlog-stamp/ep_spdlog-install-*.log [ 31%] Completed 'ep_spdlog' [ 31%] Built target ep_spdlog [ 33%] Creating directories for 'ep_lz4' [ 34%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 36%] No update step for 'ep_lz4' [ 37%] No patch step for 'ep_lz4' [ 38%] Performing configure step for 'ep_lz4' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 40%] Performing build step for 'ep_lz4' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 41%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 43%] Completed 'ep_lz4' [ 43%] Built target ep_lz4 [ 44%] Creating directories for 'ep_zstd' [ 45%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 47%] No update step for 'ep_zstd' [ 48%] No patch step for 'ep_zstd' [ 50%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 51%] Performing build step for 'ep_zstd' -- ep_openssl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_openssl-stamp/ep_openssl-install-*.log [ 52%] Completed 'ep_openssl' [ 52%] Built target ep_openssl [ 54%] Creating directories for 'ep_magic' [ 55%] Performing download step (git clone) for 'ep_magic' -- ep_magic download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_magic-stamp/ep_magic-download-*.log [ 56%] No update step for 'ep_magic' [ 58%] No patch step for 'ep_magic' [ 59%] Performing configure step for 'ep_magic' -- ep_magic configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_magic-stamp/ep_magic-configure-*.log [ 61%] Performing build step for 'ep_magic' -- ep_magic build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_magic-stamp/ep_magic-build-*.log [ 62%] Performing install step for 'ep_magic' -- ep_magic install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_magic-stamp/ep_magic-install-*.log [ 63%] Completed 'ep_magic' [ 63%] Built target ep_magic [ 65%] Creating directories for 'ep_curl' [ 66%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 68%] No update step for 'ep_curl' [ 69%] No patch step for 'ep_curl' [ 70%] Performing configure step for 'ep_curl' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 72%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 73%] Completed 'ep_zstd' [ 73%] Built target ep_zstd -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 75%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 76%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 77%] Completed 'ep_curl' [ 77%] Built target ep_curl [ 79%] Creating directories for 'ep_awssdk' [ 80%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 81%] No update step for 'ep_awssdk' [ 83%] Performing patch step for 'ep_awssdk' patching file third-party/CMakeLists.txt patching file cmake/AWSSDKConfig.cmake Hunk #1 succeeded at 116 (offset -13 lines). [ 84%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 86%] Performing build step for 'ep_awssdk' -- ep_awssdk build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_awssdk-stamp/ep_awssdk-build-*.log [ 87%] Performing install step for 'ep_awssdk' -- ep_awssdk install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/src/ep_awssdk-stamp/ep_awssdk-install-*.log [ 88%] Completed 'ep_awssdk' [ 88%] Built target ep_awssdk [ 90%] Creating directories for 'tiledb' [ 91%] No download step for 'tiledb' [ 93%] No update step for 'tiledb' [ 94%] No patch step for 'tiledb' [ 95%] Performing configure step for 'tiledb' -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB regular build. -- Performing Test HAVE_AVX2 -- Performing Test HAVE_AVX2 - Success -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Found LZ4: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/liblz4.a -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Zlib, adding imported target: /usr/lib/x86_64-linux-gnu/libz.so -- Found Zstd: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libzstd.a -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libcrypto.a (found suitable version "1.1.1i", minimum required is "1.1.0") -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libssl.a -- OpenSSL crypto: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libcrypto.a -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install;/usr/local/opt/openssl -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libssl.a -- OpenSSL crypto: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libcrypto.a -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install;/usr/local/opt/openssl -- Found libmagic: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/liblibmagic.a -- The TileDB library is compiled with stats enabled. -- The TileDB library is compiled with query serialization enabled. -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libssl.a -- OpenSSL crypto: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libcrypto.a -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install;/usr/local/opt/openssl -- The TileDB library is compiled with S3 support. -- Found AWS SDK for C++, Version: 1.8.84, Install Root:/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install, Platform Prefix:, Platform Dependent Libraries: pthread;crypto;ssl;z;curl -- Found AWS lib: aws-cpp-sdk-s3 (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libaws-cpp-sdk-s3.a) -- Found AWS lib: aws-cpp-sdk-core (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libaws-cpp-sdk-core.a) -- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libaws-c-event-stream.a) -- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libaws-checksums.a) -- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libaws-c-common.a) -- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libaws-c-common.a) -- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libaws-c-event-stream.a) -- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libaws-checksums.a) -- Found AWS lib: aws-cpp-sdk-sts (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libaws-cpp-sdk-sts.a) -- Found AWS lib: aws-cpp-sdk-identity-management (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libaws-cpp-sdk-identity-management.a) -- Found CURL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libcurl.a (found version "7.74.0") -- Found CURL: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libcurl.a' (found version "") -- The TileDB library is compiled with HDFS support. -- Found Zlib, adding imported target: /usr/lib/x86_64-linux-gnu/libz.so -- Found curl-config: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/bin/curl-config' -- Computed initial transitive Curl library links to TileDB targets: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libcurl.a;-L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib;-lssl;-lz;-lcrypto;-ldl;-lpthread;-pthread' -- Adding final transitive Curl library links to TileDB targets: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib/libcurl.a;-L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/externals/install/lib;-ldl;-lpthread;-pthread' -- Found CapnProto lib: capnp -- Found CapnProto lib: kj -- Found CapnProto lib: capnp-json -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build/tiledb [ 97%] Performing build step for 'tiledb' [ 0%] Generating ../../../tiledb/sm/misc/magic_mgc_gzipped.bin [ 0%] Building CXX object tiledb/common/CMakeFiles/baseline.dir/logger.cc.o [ 0%] Built target gen_mgc_unarch [ 0%] Building CXX object tiledb/common/CMakeFiles/stringx.dir/stdx_string.cc.o [ 0%] Built target stringx [ 0%] Building CXX object tiledb/common/types/CMakeFiles/datum.dir/untyped_datum.cc.o [ 0%] Building CXX object tiledb/common/types/CMakeFiles/datum.dir/dynamic_typed_datum.cc.o [ 0%] Built target datum [ 1%] Building CXX object tiledb/sm/misc/CMakeFiles/constants.dir/constants.cc.o [ 1%] Building CXX object tiledb/common/CMakeFiles/baseline.dir/governor/governor.cc.o [ 1%] Built target constants [ 1%] Building CXX object tiledb/sm/misc/CMakeFiles/math.dir/tdb_math.cc.o [ 1%] Building CXX object tiledb/common/CMakeFiles/baseline.dir/heap_profiler.cc.o [ 1%] Built target math [ 1%] Building CXX object tiledb/sm/misc/CMakeFiles/time.dir/tdb_time.cc.o [ 1%] Built target time [ 1%] Building CXX object 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Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/src/bitshuffle/bitshuffle_core.cc.o [ 96%] Building C object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/blosc/src/shuffle.c.o [ 96%] Building C object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/blosc/src/shuffle-generic.c.o [ 96%] Building C object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/blosc/src/bitshuffle-stub.c.o [ 98%] Building C object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/__/external/blosc/src/shuffle-avx2.c.o [ 98%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/sm/serialization/posix/tiledb-rest.capnp.c++.o [ 98%] Built target TILEDB_CORE_OBJECTS [100%] Linking CXX shared library libtiledb.so [100%] Built target tiledb_shared [ 98%] No install step for 'tiledb' [100%] Completed 'tiledb' [100%] Built target tiledb [ 0%] Generating ../../../tiledb/sm/misc/magic_mgc_gzipped.bin [ 0%] Built target gen_mgc_unarch Consolidate compiler generated dependencies of target TILEDB_CORE_OBJECTS [ 64%] Built target TILEDB_CORE_OBJECTS [ 66%] Built target tiledb_shared Consolidate compiler generated dependencies of target baseline [ 67%] Built target baseline Consolidate compiler generated dependencies of target stringx [ 67%] Built target stringx Consolidate compiler generated dependencies of target thread_pool [ 67%] Built target thread_pool Consolidate compiler generated dependencies of target datum [ 67%] Built target datum [ 67%] Built target range Consolidate compiler generated dependencies of target stats [ 67%] Built target stats Consolidate compiler generated dependencies of target buffer [ 67%] Built target buffer Consolidate compiler generated dependencies of target parse_argument [ 69%] Built target parse_argument Consolidate compiler generated dependencies of target constants [ 71%] Built target constants Consolidate compiler generated dependencies of target config [ 71%] Built target config Consolidate compiler generated dependencies of target cancelable_tasks [ 73%] Built target cancelable_tasks Consolidate compiler generated dependencies of target math [ 73%] Built target math Consolidate compiler generated dependencies of target vfs [ 77%] Built target vfs Consolidate compiler generated dependencies of target uri_format [ 77%] Built target uri_format Consolidate compiler generated dependencies of target tile [ 77%] Built target tile Consolidate compiler generated dependencies of target compressors [ 81%] Built target compressors Consolidate compiler generated dependencies of target crypto [ 83%] Built target crypto Consolidate compiler generated dependencies of target filter [ 83%] Built target filter Consolidate compiler generated dependencies of target byteshuffle_filter [ 84%] Built target byteshuffle_filter Consolidate compiler generated dependencies of target bitshuffle_filter [ 86%] Built target bitshuffle_filter Consolidate compiler generated dependencies of target checksum_filters [ 86%] Built target checksum_filters Consolidate compiler generated dependencies of target compression_filter [ 86%] Built target compression_filter Consolidate compiler generated dependencies of target encryption_filters [ 88%] Built target encryption_filters Consolidate compiler generated dependencies of target all_filters [ 90%] Built target all_filters Consolidate compiler generated dependencies of target filter_pipeline [ 92%] Built target filter_pipeline Consolidate compiler generated dependencies of target attribute [ 92%] Built target attribute Consolidate compiler generated dependencies of target misc_types [ 94%] Built target misc_types Consolidate compiler generated dependencies of target dimension [ 94%] Built target dimension Consolidate compiler generated dependencies of target domain [ 96%] Built target domain Consolidate compiler generated dependencies of target time [ 96%] Built target time Consolidate compiler generated dependencies of target uuid [ 96%] Built target uuid Consolidate compiler generated dependencies of target array_schema [ 96%] Built target array_schema Consolidate compiler generated dependencies of target tdb_gzip_embedded_data [ 98%] Built target tdb_gzip_embedded_data Consolidate compiler generated dependencies of target group [100%] Built target group Consolidate compiler generated dependencies of target metadata [100%] Built target metadata [100%] Built target query Consolidate compiler generated dependencies of target range_subset [100%] Built target range_subset Install the project... -- Install configuration: "Release" -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib/libtiledb.so.2.10 -- Set runtime path of "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib/libtiledb.so.2.10" to "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib" -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib/libtiledb.so -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/tiledb.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/tiledb_enum.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/tiledb_version.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/tiledb_experimental.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/tiledb_serialization.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/tiledb -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/tiledb_experimental -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/array.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/array_schema.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/array_schema_evolution.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/attribute.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/config.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/context.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/core_interface.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/deleter.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/dimension.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/domain.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/error.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/exception.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/filter.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/filter_list.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/fragment_info.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/group.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/group_experimental.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/object.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/object_iter.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/query.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/query_condition.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/schema_base.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/stats.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/subarray.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/type.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/utils.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/version.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/vfs.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/arrowio -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/arrow_io_impl.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include/tiledb/tiledb_export.h -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib/cmake/TileDB/TileDBConfig.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib/cmake/TileDB/TileDBTargets.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib/cmake/TileDB/TileDBTargets-release.cmake -- Installing: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib/pkgconfig/tiledb.pc Built target install-tiledb ext_modules: [, , ] tiledb_ext: main_ext: tiledb_cc_ext: tiledb_ext.library_dirs: [] libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' Downloading TileDB package from df621f5ad6b7b416ef8db10e663f593ad7fd3922... Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/build... CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_WERROR=OFF', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=ON', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a'] prefix_dir: do_install: True Copying file /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib/libtiledb.so to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/tiledb/native/libtiledb.so ------------------- libtiledb_objects: ['native/libtiledb.so*'] ------------------- running egg_info creating tiledb.egg-info writing tiledb.egg-info/PKG-INFO writing dependency_links to tiledb.egg-info/dependency_links.txt writing requirements to tiledb.egg-info/requires.txt writing top-level names to tiledb.egg-info/top_level.txt writing manifest file 'tiledb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' adding license file 'external/LICENSE-string_view.txt' adding license file 'external/LICENSE-tsl_robin_map.txt' writing manifest file 'tiledb.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build/lib.linux-x86_64-3.7 creating build/lib.linux-x86_64-3.7/tiledb copying tiledb/util.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/version.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/query_condition.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/array.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/fragment.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/group.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/filter.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/parquet_.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/ctx.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/__init__.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/version_.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/highlevel.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/schema_evolution.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/object.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/multirange_indexing.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/vfs.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/schema.py -> build/lib.linux-x86_64-3.7/tiledb copying tiledb/dataframe_.py -> build/lib.linux-x86_64-3.7/tiledb creating build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_serialization.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/common.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_group.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_metadata.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_core.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_libtiledb.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_schema_evolution.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_util.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_query_condition.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/check_csv_dir.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_multi_index.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/strategies.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_vfs.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_filters.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_examples.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_fixes.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/__init__.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/all.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_domain_index.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_pandas_dataframe.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_fragments.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_hypothesis.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/conftest.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/fixtures.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_dask.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_multi_index-hp.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/datatypes.py -> build/lib.linux-x86_64-3.7/tiledb/tests copying tiledb/tests/test_compat.py -> build/lib.linux-x86_64-3.7/tiledb/tests creating build/lib.linux-x86_64-3.7/tiledb/native copying tiledb/native/libtiledb.so -> build/lib.linux-x86_64-3.7/tiledb/native running build_ext ext_modules: [, , ] tiledb_ext: main_ext: tiledb_cc_ext: tiledb_ext.library_dirs: ['/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib'] libtiledb_exists checking 'library_dirs': ['/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib'] libtiledb_exists found: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib/libtiledb.so' prefix_dir: do_install: False cythoning tiledb/libtiledb.pyx to tiledb/libtiledb.cpp building 'tiledb.libtiledb' extension creating build/temp.linux-x86_64-3.7 creating build/temp.linux-x86_64-3.7/tiledb gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/libtiledb.cpp -o build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -std=c++17 -Wno-deprecated-declarations In file included from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969:0, from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tiledb/libtiledb.cpp:769: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ tiledb/libtiledb.pyx: In function ‘PyObject* __pyx_pf_6tiledb_9libtiledb_4Attr_4fill___get__(__pyx_obj_6tiledb_9libtiledb_Attr*)’: tiledb/libtiledb.pyx:1619:12: warning: variable ‘__pyx_v_shape’ set but not used [-Wunused-but-set-variable] """Fill value for unset cells of this attribute ^~~~~~~~~~~~~ tiledb/libtiledb.pyx: At global scope: tiledb/libtiledb.pyx:5274:12: warning: ‘int __pyx_f_6tiledb_9libtiledb_vfs_ls_callback(const char*, void*)’ defined but not used [-Wunused-function] cdef int vfs_ls_callback(const char* path_ptr, void* py_list): ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tiledb/libtiledb.pyx: In function ‘PyObject* __pyx_pf_6tiledb_9libtiledb_5Array_30nonempty_domain(__pyx_obj_6tiledb_9libtiledb_Array*)’: tiledb/libtiledb.pyx:3748:18: warning: ‘__pyx_v_end_buf_ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized] rc = tiledb_array_get_non_empty_domain_var_from_index( ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tiledb/libtiledb.pyx:3700:9: note: ‘__pyx_v_end_buf_ptr’ was declared here """Return the minimum bounding domain which encompasses nonempty values. ^~~~~~~~~~~~~~~~~~~ g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.9/lib -L/home/docs/.pyenv/versions/3.7.9/lib build/temp.linux-x86_64-3.7/tiledb/libtiledb.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so building 'tiledb.main' extension creating build/temp.linux-x86_64-3.7/tiledb/tests gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/main.cc -o build/temp.linux-x86_64-3.7/tiledb/main.o -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/core.cc -o build/temp.linux-x86_64-3.7/tiledb/core.o -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/npbuffer.cc -o build/temp.linux-x86_64-3.7/tiledb/npbuffer.o -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/fragment.cc -o build/temp.linux-x86_64-3.7/tiledb/fragment.o -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/schema_evolution.cc -o build/temp.linux-x86_64-3.7/tiledb/schema_evolution.o -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/tests/test_metadata.cc -o build/temp.linux-x86_64-3.7/tiledb/tests/test_metadata.o -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/serialization.cc -o build/temp.linux-x86_64-3.7/tiledb/serialization.o -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/tests/test_serialization.cc -o build/temp.linux-x86_64-3.7/tiledb/tests/test_serialization.o -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.9/lib -L/home/docs/.pyenv/versions/3.7.9/lib build/temp.linux-x86_64-3.7/tiledb/main.o build/temp.linux-x86_64-3.7/tiledb/core.o build/temp.linux-x86_64-3.7/tiledb/npbuffer.o build/temp.linux-x86_64-3.7/tiledb/fragment.o build/temp.linux-x86_64-3.7/tiledb/schema_evolution.o build/temp.linux-x86_64-3.7/tiledb/tests/test_metadata.o build/temp.linux-x86_64-3.7/tiledb/serialization.o build/temp.linux-x86_64-3.7/tiledb/tests/test_serialization.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/main.cpython-37m-x86_64-linux-gnu.so building 'tiledb.cc' extension creating build/temp.linux-x86_64-3.7/tiledb/cc gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/array.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/array.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/attribute.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/attribute.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/common.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/common.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/context.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/context.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/domain.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/domain.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/enum.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/enum.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/filter.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/filter.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/group.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/group.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/object.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/object.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/query.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/query.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/schema.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/schema.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/tiledbcpp.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/tiledbcpp.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/pybind11/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/include -I/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.9/include/python3.7m -c tiledb/cc/vfs.cc -o build/temp.linux-x86_64-3.7/tiledb/cc/vfs.o -fvisibility=hidden -g0 -std=c++17 -Wno-deprecated-declarations -fvisibility=hidden g++ -pthread -shared -L/home/docs/.pyenv/versions/3.7.9/lib -L/home/docs/.pyenv/versions/3.7.9/lib build/temp.linux-x86_64-3.7/tiledb/cc/array.o build/temp.linux-x86_64-3.7/tiledb/cc/attribute.o build/temp.linux-x86_64-3.7/tiledb/cc/common.o build/temp.linux-x86_64-3.7/tiledb/cc/context.o build/temp.linux-x86_64-3.7/tiledb/cc/domain.o build/temp.linux-x86_64-3.7/tiledb/cc/enum.o build/temp.linux-x86_64-3.7/tiledb/cc/filter.o build/temp.linux-x86_64-3.7/tiledb/cc/group.o build/temp.linux-x86_64-3.7/tiledb/cc/object.o build/temp.linux-x86_64-3.7/tiledb/cc/query.o build/temp.linux-x86_64-3.7/tiledb/cc/schema.o build/temp.linux-x86_64-3.7/tiledb/cc/tiledbcpp.o build/temp.linux-x86_64-3.7/tiledb/cc/vfs.o -L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-df621f5a/dist/lib -ltiledb -o build/lib.linux-x86_64-3.7/tiledb/cc.cpython-37m-x86_64-linux-gnu.so creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/util.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/version.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/query_condition.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/array.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/fragment.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/group.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/filter.py -> build/bdist.linux-x86_64/egg/tiledb creating build/bdist.linux-x86_64/egg/tiledb/native copying build/lib.linux-x86_64-3.7/tiledb/native/libtiledb.so -> build/bdist.linux-x86_64/egg/tiledb/native copying build/lib.linux-x86_64-3.7/tiledb/parquet_.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/main.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/ctx.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/__init__.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/version_.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/highlevel.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/schema_evolution.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/object.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/multirange_indexing.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/cc.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/tiledb creating build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_serialization.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/common.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_group.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_metadata.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_core.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_libtiledb.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_schema_evolution.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_util.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_query_condition.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/check_csv_dir.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_multi_index.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/strategies.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_vfs.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_filters.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_examples.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_fixes.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/__init__.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/all.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_domain_index.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_pandas_dataframe.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_fragments.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_hypothesis.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/conftest.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/fixtures.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_dask.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_multi_index-hp.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/datatypes.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/tests/test_compat.py -> build/bdist.linux-x86_64/egg/tiledb/tests copying build/lib.linux-x86_64-3.7/tiledb/vfs.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/schema.py -> build/bdist.linux-x86_64/egg/tiledb copying build/lib.linux-x86_64-3.7/tiledb/dataframe_.py -> build/bdist.linux-x86_64/egg/tiledb byte-compiling build/bdist.linux-x86_64/egg/tiledb/util.py to util.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/version.py to version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/query_condition.py to query_condition.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/array.py to array.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/fragment.py to fragment.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/group.py to group.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/filter.py to filter.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/parquet_.py to parquet_.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/ctx.py to ctx.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/version_.py to version_.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/highlevel.py to highlevel.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/schema_evolution.py to schema_evolution.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/object.py to object.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/multirange_indexing.py to multirange_indexing.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_serialization.py to test_serialization.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/common.py to common.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_group.py to test_group.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_metadata.py to test_metadata.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_core.py to test_core.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_libtiledb.py to test_libtiledb.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_schema_evolution.py to test_schema_evolution.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_util.py to test_util.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_query_condition.py to test_query_condition.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/check_csv_dir.py to check_csv_dir.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_multi_index.py to test_multi_index.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/strategies.py to strategies.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_vfs.py to test_vfs.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_filters.py to test_filters.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_examples.py to test_examples.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_fixes.py to test_fixes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/all.py to all.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_domain_index.py to test_domain_index.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_pandas_dataframe.py to test_pandas_dataframe.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_fragments.py to test_fragments.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_hypothesis.py to test_hypothesis.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/conftest.py to conftest.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/fixtures.py to fixtures.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_dask.py to test_dask.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_multi_index-hp.py to test_multi_index-hp.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/datatypes.py to datatypes.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/tests/test_compat.py to test_compat.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/vfs.py to vfs.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/schema.py to schema.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/dataframe_.py to dataframe_.cpython-37.pyc creating stub loader for tiledb/libtiledb.cpython-37m-x86_64-linux-gnu.so creating stub loader for tiledb/main.cpython-37m-x86_64-linux-gnu.so creating stub loader for tiledb/cc.cpython-37m-x86_64-linux-gnu.so byte-compiling build/bdist.linux-x86_64/egg/tiledb/libtiledb.py to libtiledb.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/main.py to main.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/tiledb/cc.py to cc.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying tiledb.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt creating dist creating 'dist/tiledb-0.21.1-py3.7-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing tiledb-0.21.1-py3.7-linux-x86_64.egg creating /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.21.1-py3.7-linux-x86_64.egg Extracting tiledb-0.21.1-py3.7-linux-x86_64.egg to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages Adding tiledb 0.21.1 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.21.1-py3.7-linux-x86_64.egg Processing dependencies for tiledb==0.21.1 Searching for numpy==1.21.6 Best match: numpy 1.21.6 Adding numpy 1.21.6 to easy-install.pth file Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages Searching for packaging==23.0 Best match: packaging 23.0 Adding packaging 23.0 to easy-install.pth file Using /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages Finished processing dependencies for tiledb==0.21.1 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools_scm/git.py:135: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable" is shallow and may cause errors warnings.warn(f'"{wd.path}" is shallow and may cause errors') /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/tiledb/libtiledb.pxd tree = Parsing.p_module(s, pxd, full_module_name) [rtd-command-info] start-time: 2023-03-10T04:21:15.637403Z, end-time: 2023-03-10T04:21:15.700760Z, duration: 0, exit-code: 0 cat doc/source/conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # -- Imports configuration ------------------------------------------------- import os import sys from os.path import abspath, join, dirname sys.path.insert(0, abspath(join(dirname(__file__)))) # -- ReadTheDocs configuration --------------------------------------------- # Special handling on ReadTheDocs builds. # Some of this code is from https://github.com/robotpy/robotpy-docs/blob/master/conf.py readthedocs = os.environ.get("READTHEDOCS", None) == "True" rtd_version = os.environ.get("READTHEDOCS_VERSION", "latest") rtd_version = rtd_version if rtd_version in ["stable", "latest"] else "stable" # -- Project information ----------------------------------------------------- project = "TileDB-Py" copyright = "2020, TileDB, Inc." author = "TileDB, Inc." # The short X.Y version version = "0.6" # The full version, including alpha/beta/rc tags release = "0.6.5" # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = ["sphinx.ext.autodoc", "sphinx.ext.doctest", "sphinx.ext.intersphinx"] # Mapping for linking between RTD subprojects. if readthedocs: intersphinx_mapping = { "tiledb": ( "https://tiledb-inc-tiledb.readthedocs-hosted.com/en/%s/" % rtd_version, None, ), "tiledb-py": ( "https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/%s/" % rtd_version, None, ), "python": ("https://docs.python.org/", None), } # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = ".rst" # The master toctree document. master_doc = "index" # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path . exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] # The name of the Pygments (syntax highlighting) style to use. pygments_style = "friendly" # -- Options for HTML output ------------------------------------------------- html_static_path = ["_static"] html_logo = "_static/tiledb-logo_color_no_margin_@4x.png" html_favicon = "_static/favicon.ico" if readthedocs: html_theme = "default" else: import sphinx_rtd_theme html_theme = "sphinx_rtd_theme" html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] # -- Options for HTMLHelp output --------------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = "TileDB-Pydoc" # -- Options for LaTeX output ------------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, "TileDB-Py.tex", "TileDB-Py Documentation", "TileDB, Inc.", "manual") ] # -- Options for manual page output ------------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [(master_doc, "tiledb-py", "TileDB-Py Documentation", [author], 1)] # -- Options for Texinfo output ---------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ( master_doc, "TileDB-Py", "TileDB-Py Documentation", author, "TileDB-Py", "One line description of project.", "Miscellaneous", ) ] # -- Custom Document processing ---------------------------------------------- # Generate the sidebar automatically so that it is identical across all subprojects. # This (and gensidebar.py) from https://github.com/robotpy/robotpy-docs import gensidebar gensidebar.generate_sidebar( {"on_rtd": readthedocs, "rtd_version": rtd_version}, "tiledb-py" ) # -- Custom setup ----------------------------------------------------------- def setup(app): app.add_stylesheet("custom.css") ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} # This following legacy behavior will gradually be sliced out until its deprecated and removed. # Skipped for Sphinx 6+ # Skipped by internal Feature flag SKIP_SPHINX_HTML_THEME_PATH # Skipped by all new projects since SKIP_SPHINX_HTML_THEME_PATH's introduction (jan 2023) if ( using_rtd_theme and version_info < (6,0) and not False ): theme = importlib.import_module('sphinx_rtd_theme') if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] # Define websupport2_base_url and websupport2_static_url if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "stable", 'version_slug': "stable", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("release-0.6", "/en/release-0.6/"), ], 'downloads': [ ], 'subprojects': [ ], 'slug': 'tiledb-inc-tiledb-py', 'name': u'TileDB-Py', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/tiledb-py/en/stable/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/doc/source/', 'api_host': 'https://readthedocs.com', 'github_user': 'TileDB-Inc', 'proxied_api_host': '/_', 'github_repo': 'TileDB-Py', 'github_version': '95df74fc53b2a4125bf54db25d51a050f76a9f36', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': '95df74fc53b2a4125bf54db25d51a050f76a9f36', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': '95df74fc53b2a4125bf54db25d51a050f76a9f36', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '95df74fc', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'tag' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/tiledb-inc-tiledb-py/builds/1342280/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2023-03-10T04:21:15.915020Z, end-time: 2023-03-10T04:21:19.564121Z, duration: 3, exit-code: 0 python -m sphinx -T -E -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v1.8.6 loading translations [en]... done making output directory... loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/en/stable/objects.inv... loading intersphinx inventory from https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv' not fetchable due to : 404 Client Error: Not Found for url: https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/python-api/en/stable/objects.inv loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [html]: targets for 2 source files that are out of date updating environment: 2 added, 0 changed, 0 removed reading sources... [ 50%] index reading sources... [100%] python-api /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/sphinx/util/nodes.py:94: FutureWarning: The iterable returned by Node.traverse() will become an iterator instead of a list in Docutils > 0.16. for classifier in reversed(node.parent.traverse(nodes.classifier)): docstring of tiledb.ArraySchema.version:4: WARNING: Field list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import class 'CompressionFilter' from module 'tiledb.libtiledb'; the following exception was raised: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/sphinx/util/inspect.py", line 225, in safe_getattr return getattr(obj, name, *defargs) AttributeError: module 'tiledb.libtiledb' has no attribute 'CompressionFilter' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/sphinx/ext/autodoc/importer.py", line 193, in import_object obj = attrgetter(obj, attrname) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/sphinx/ext/autodoc/__init__.py", line 290, in get_attr return autodoc_attrgetter(self.env.app, obj, name, *defargs) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/sphinx/ext/autodoc/__init__.py", line 1563, in autodoc_attrgetter return safe_getattr(obj, name, *defargs) File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/sphinx/util/inspect.py", line 241, in safe_getattr raise AttributeError(name) AttributeError: CompressionFilter /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.21.1-py3.7-linux-x86_64.egg/tiledb/__init__.py:docstring of tiledb.DenseArray.query:21: WARNING: Unexpected indentation. /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.21.1-py3.7-linux-x86_64.egg/tiledb/__init__.py:docstring of tiledb.DenseArray.query:22: WARNING: Block quote ends without a blank line; unexpected unindent. docstring of tiledb.DenseArray.from_numpy:3: WARNING: Unexpected indentation. docstring of tiledb.DenseArray.from_numpy:1: WARNING: Inline strong start-string without end-string. /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.21.1-py3.7-linux-x86_64.egg/tiledb/vfs.py:docstring of tiledb.FileIO.read:4: WARNING: Field list ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.21.1-py3.7-linux-x86_64.egg/tiledb/vfs.py:docstring of tiledb.FileIO.seek:3: WARNING: Field list ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 50%] index writing output... [100%] python-api /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.21.1-py3.7-linux-x86_64.egg/tiledb/fragment.py:docstring of tiledb.FragmentInfoList:: WARNING: more than one target found for cross-reference 'uri': tiledb.libtiledb.Array.uri, tiledb.Group.uri, tiledb.Object.uri /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.21.1-py3.7-linux-x86_64.egg/tiledb/fragment.py:docstring of tiledb.FragmentInfoList:: WARNING: more than one target found for cross-reference 'version': tiledb.ArraySchema.version, tiledb.libtiledb.version /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.21.1-py3.7-linux-x86_64.egg/tiledb/fragment.py:docstring of tiledb.FragmentInfo:: WARNING: more than one target found for cross-reference 'uri': tiledb.libtiledb.Array.uri, tiledb.Group.uri, tiledb.Object.uri /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/tiledb-0.21.1-py3.7-linux-x86_64.egg/tiledb/fragment.py:docstring of tiledb.FragmentInfo:: WARNING: more than one target found for cross-reference 'version': tiledb.ArraySchema.version, tiledb.libtiledb.version generating indices... genindex writing additional pages... search copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 13 warnings. The HTML pages are in ../../_readthedocs/html. Updating searchtools for Read the Docs search...