Read the Docs build information
Build id: 1316896
Project: mdolab-pygeo
Version: 186
Commit: e7b5b983722c9a281afd4becfd41aa093d86ff1b
Date: 2023-02-24T19:04:26.027816Z
State: finished
Success: True


[rtd-command-info] start-time: 2023-02-24T19:04:28.040368Z, end-time: 2023-02-24T19:04:32.111144Z, duration: 4, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/mdolab/pygeo.git .
Cloning into '.'...

[rtd-command-info] start-time: 2023-02-24T19:04:32.334159Z, end-time: 2023-02-24T19:04:32.907703Z, duration: 0, exit-code: 0
git fetch origin --force --tags --prune --prune-tags --depth 50 pull/186/head:external-186
From https://github.com/mdolab/pygeo
 * [new ref]         refs/pull/186/head -> external-186

[rtd-command-info] start-time: 2023-02-24T19:04:33.112817Z, end-time: 2023-02-24T19:04:33.460899Z, duration: 0, exit-code: 0
git checkout --force e7b5b983722c9a281afd4becfd41aa093d86ff1b
Note: switching to 'e7b5b983722c9a281afd4becfd41aa093d86ff1b'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at e7b5b98 Merge pull request #1 from bmlowe4/bl/oversetfix

[rtd-command-info] start-time: 2023-02-24T19:04:33.847871Z, end-time: 2023-02-24T19:04:33.919434Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-02-24T19:04:35.248425Z, end-time: 2023-02-24T19:04:40.118547Z, duration: 4, exit-code: 0
python3.7 -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/186/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/186/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2023-02-24T19:04:40.322207Z, end-time: 2023-02-24T19:04:42.281037Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
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Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 67.4.0
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[rtd-command-info] start-time: 2023-02-24T19:04:42.486567Z, end-time: 2023-02-24T19:04:49.395841Z, duration: 6, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0
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Building wheels for collected packages: mock
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Installing collected packages: snowballstemmer, pytz, mock, commonmark, charset-normalizer, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed MarkupSafe-2.1.2 Pygments-2.14.0 alabaster-0.7.13 babel-2.11.0 certifi-2022.12.7 charset-normalizer-3.0.1 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.0 pillow-9.4.0 pytz-2022.7.1 readthedocs-sphinx-ext-2.2.0 recommonmark-0.5.0 requests-2.28.2 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.14

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python -m pip install --exists-action=w --no-cache-dir -r doc/requirements.txt
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Installing collected packages: appdirs, zipp, typing-extensions, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-jquery, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, rply, pyyaml, numpy, latexcodec, docutils, pybtex, importlib-metadata, baron, sphinx, redbaron, pybtex-docutils, sphinxcontrib-bibtex, sphinxcontrib-autoprogram, sphinx-tabs, sphinx-rtd-theme, sphinx-prompt, sphinx-copybutton, numpydoc, sphinx_mdolab_theme
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Successfully installed appdirs-1.4.4 baron-0.10.1 docutils-0.18.1 importlib-metadata-6.0.0 latexcodec-2.0.1 numpy-1.21.6 numpydoc-1.5.0 pybtex-0.24.0 pybtex-docutils-1.0.2 pyyaml-6.0 redbaron-0.9.2 rply-0.7.8 sphinx-5.3.0 sphinx-copybutton-0.5.1 sphinx-prompt-1.5.0 sphinx-rtd-theme-1.2.0 sphinx-tabs-3.4.1 sphinx_mdolab_theme-1.4.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-autoprogram-0.1.8 sphinxcontrib-bibtex-2.5.0 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 typing-extensions-4.5.0 zipp-3.14.0

[rtd-command-info] start-time: 2023-02-24T19:04:59.202626Z, end-time: 2023-02-24T19:04:59.269174Z, duration: 0, exit-code: 0
cat doc/conf.py
# Standard Python modules
import os
import sys

# External modules
from sphinx_mdolab_theme.config import *

# -- Path setup --------------------------------------------------------------
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.


sys.path.insert(0, os.path.abspath("../"))
sys.path.insert(0, os.path.abspath("../../"))
sys.path.insert(0, os.path.abspath("./_exts"))

# -- Project information -----------------------------------------------------
project = "pyGeo"

# -- General configuration -----------------------------------------------------
# Built-in Sphinx extensions are already contained in the imported variable
# here we add external extensions, which must also be added to requirements.txt
# so that RTD can import and use them
extensions.extend(
    [
        "sphinx_mdolab_theme.ext.embed_code",
        "sphinxcontrib.bibtex",
    ]
)

# mock import for autodoc
autodoc_mock_imports = ["numpy", "mpi4py", "scipy", "pyspline", "baseclasses", "pysurf", "prefoil", "pyOCSM", "openvsp"]

# This sets the bibtex bibliography file(s) to reference in the documentation
bibtex_bibfiles = ["ref.bib"]




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#
# Note: this file shouldn't rely on extra dependencies.

import importlib
import sys
import os.path

# Borrowed from six.
PY3 = sys.version_info[0] == 3
string_types = str if PY3 else basestring

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}


# This following legacy behavior will gradually be sliced out until its deprecated and removed.
# Skipped for Sphinx 6+
# Skipped by internal Feature flag SKIP_SPHINX_HTML_THEME_PATH
# Skipped by all new projects since SKIP_SPHINX_HTML_THEME_PATH's introduction (jan 2023)
if (
        using_rtd_theme
        and version_info < (6,0)
        and not False
    ):
    theme = importlib.import_module('sphinx_rtd_theme')
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

# Define websupport2_base_url and websupport2_static_url
if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://assets.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "186",
    'version_slug': "186",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://assets.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'proxied_static_path': "/_/static/",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
    ],
    'slug': 'mdolab-pygeo',
    'name': u'pygeo',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://mdolab-pygeo.readthedocs-hosted.com/en/latest/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/doc/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'mdolab',
    'proxied_api_host': '/_',
    'github_repo': 'pygeo',
    'github_version': 'e7b5b983722c9a281afd4becfd41aa093d86ff1b',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'e7b5b983722c9a281afd4becfd41aa093d86ff1b',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'e7b5b983722c9a281afd4becfd41aa093d86ff1b',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': 'e7b5b983',
}

# For sphinx >=1.8 we can use html_baseurl to set the canonical URL.
# https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl
if version_info >= (1, 8):
    if not globals().get('html_baseurl'):
        html_baseurl = context['canonical_url']
    context['canonical_url'] = None





if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'external' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")
    readthedocs_vcs_url = 'https://github.com/mdolab/pygeo/pull/186'
    readthedocs_build_url = 'https://readthedocs.com/projects/mdolab-pygeo/builds/1316896/'

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2023-02-24T19:04:59.677679Z, end-time: 2023-02-24T19:05:12.896290Z, duration: 13, exit-code: 0
python -m sphinx -T -E -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html
Running Sphinx v5.3.0
making output directory... done
checking bibtex cache... out of date
parsing bibtex file /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/checkouts/186/doc/ref.bib... parsed 1 entries
[autosummary] generating autosummary for: API.rst, DVConstraints.rst, DVGeometry.rst, DVGeometryCST.rst, DVGeometryESP.rst, DVGeometryMulti.rst, DVGeometryVSP.rst, advanced_ffd.rst, contribute.rst, cst_tutorial.rst, esp_airfoil.rst, geo_utils.rst, getting_started.rst, index.rst, install.rst, introduction.rst, pyGeo.rst, tutorial.rst, update_pygeo.rst
loading intersphinx inventory from https://mdolab-pygeo.readthedocs-hosted.com/en/latest/objects.inv...
loading intersphinx inventory from https://mdolab-pyoptsparse.readthedocs-hosted.com/en/latest/objects.inv...
loading intersphinx inventory from https://mdolab-baseclasses.readthedocs-hosted.com/en/latest/objects.inv...
loading intersphinx inventory from https://mdolab-idwarp.readthedocs-hosted.com/en/latest/objects.inv...
loading intersphinx inventory from https://mdolab-adflow.readthedocs-hosted.com/en/latest/objects.inv...
loading intersphinx inventory from https://mdolab-pyhyp.readthedocs-hosted.com/en/latest/objects.inv...
loading intersphinx inventory from https://mdolab-multipoint.readthedocs-hosted.com/en/latest/objects.inv...
loading intersphinx inventory from https://mdolab-pyspline.readthedocs-hosted.com/en/latest/objects.inv...
loading intersphinx inventory from https://mdolab-mach-aero.readthedocs-hosted.com/en/latest/objects.inv...
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 19 source files that are out of date
updating environment: [new config] 19 added, 0 changed, 0 removed
reading sources... [  5%] API
reading sources... [ 10%] DVConstraints
reading sources... [ 15%] DVGeometry
reading sources... [ 21%] DVGeometryCST
reading sources... [ 26%] DVGeometryESP
reading sources... [ 31%] DVGeometryMulti
reading sources... [ 36%] DVGeometryVSP
reading sources... [ 42%] advanced_ffd
reading sources... [ 47%] contribute
reading sources... [ 52%] cst_tutorial
reading sources... [ 57%] esp_airfoil
reading sources... [ 63%] geo_utils
reading sources... [ 68%] getting_started
reading sources... [ 73%] index
reading sources... [ 78%] install
reading sources... [ 84%] introduction
reading sources... [ 89%] pyGeo
reading sources... [ 94%] tutorial
reading sources... [100%] update_pygeo

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  5%] API
writing output... [ 10%] DVConstraints
writing output... [ 15%] DVGeometry
writing output... [ 21%] DVGeometryCST
writing output... [ 26%] DVGeometryESP
writing output... [ 31%] DVGeometryMulti
writing output... [ 36%] DVGeometryVSP
writing output... [ 42%] advanced_ffd
writing output... [ 47%] contribute
writing output... [ 52%] cst_tutorial
writing output... [ 57%] esp_airfoil
writing output... [ 63%] geo_utils
writing output... [ 68%] getting_started
writing output... [ 73%] index
writing output... [ 78%] install
writing output... [ 84%] introduction
writing output... [ 89%] pyGeo
writing output... [ 94%] tutorial
writing output... [100%] update_pygeo

generating indices... genindex py-modindex done
highlighting module code... [ 10%] pygeo.constraints.DVCon
highlighting module code... [ 20%] pygeo.geo_utils.ffd_generation
highlighting module code... [ 30%] pygeo.geo_utils.file_io
highlighting module code... [ 40%] pygeo.geo_utils.remove_duplicates
highlighting module code... [ 50%] pygeo.parameterization.DVGeo
highlighting module code... [ 60%] pygeo.parameterization.DVGeoCST
highlighting module code... [ 70%] pygeo.parameterization.DVGeoESP
highlighting module code... [ 80%] pygeo.parameterization.DVGeoMulti
highlighting module code... [ 90%] pygeo.parameterization.DVGeoVSP
highlighting module code... [100%] pygeo.pyGeo

writing additional pages... search done
copying images... [  5%] images/c172.jpg
copying images... [ 10%] ../examples/c172_wing/images/baseline_3d.png
copying images... [ 15%] ../examples/c172_wing/images/local_3d.png
copying images... [ 21%] ../examples/c172_wing/images/refaxis.png
copying images... [ 26%] ../examples/c172_wing/images/twist_3d.png
copying images... [ 31%] ../examples/c172_wing/images/sweep_3d.png
copying images... [ 36%] ../examples/c172_wing/images/all_3d.png
copying images... [ 42%] ../examples/cst/original_points.svg
copying images... [ 47%] ../examples/cst/perturbed_coeff.svg
copying images... [ 52%] ../examples/cst/perturbed_class_chord.svg
copying images... [ 57%] ../examples/esp_airfoil/images/orig_airfoil.png
copying images... [ 63%] ../examples/esp_airfoil/images/new_airfoil.png
copying images... [ 68%] ../examples/ffd_cylinder/images/cylinder_only_3d.png
copying images... [ 73%] ../examples/ffd_cylinder/images/cyl_embedded_undeformed.png
copying images... [ 78%] ../examples/ffd_cylinder/images/cyl_embedded_deformed.png
copying images... [ 84%] ../examples/ffd_cylinder/images/deformed_cylinder.png
copying images... [ 89%] images/DPW4_FFD-27745.gif
copying images... [ 94%] images/wing.png
copying images... [100%] images/wingNew.png

copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
Updating searchtools for Read the Docs search... build succeeded.

The HTML pages are in ../_readthedocs/html.