Read the Docs build information
Build id: 1301751
Project: icb-scanpy
Version: latest
Commit: 0fec5703fba5e40f55e9c73c5fb14c3b2064cd4b
Date: 2023-02-15T17:13:52.558520Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2023-02-15T17:13:54.561201Z, end-time: 2023-02-15T17:13:57.268600Z, duration: 2, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/scverse/scanpy.git .
Cloning into '.'...

[rtd-command-info] start-time: 2023-02-15T17:13:57.465902Z, end-time: 2023-02-15T17:13:57.686038Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: switching to 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 0fec5703 remove pre-commit workflow (#2206)

[rtd-command-info] start-time: 2023-02-15T17:13:57.897679Z, end-time: 2023-02-15T17:13:57.966656Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-02-15T17:14:03.139265Z, end-time: 2023-02-15T17:14:03.244286Z, duration: 0, exit-code: 0
asdf global python 3.9.15


[rtd-command-info] start-time: 2023-02-15T17:14:03.726375Z, end-time: 2023-02-15T17:14:04.733829Z, duration: 1, exit-code: 0
python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.9.15.final.0-64 in 647ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/latest, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==21.2.3, setuptools==57.4.0, wheel==0.37.0
  activators BashActivator,CShellActivator,FishActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2023-02-15T17:14:04.925638Z, end-time: 2023-02-15T17:14:16.068405Z, duration: 11, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/latest/lib/python3.9/site-packages (21.2.3)
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Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 57.4.0
    Uninstalling setuptools-57.4.0:
      Successfully uninstalled setuptools-57.4.0
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-23.0 setuptools-58.2.0

[rtd-command-info] start-time: 2023-02-15T17:14:16.272609Z, end-time: 2023-02-15T17:14:27.799311Z, duration: 11, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0
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Building wheels for collected packages: mock
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Successfully built mock
Installing collected packages: snowballstemmer, pytz, mock, commonmark, charset-normalizer, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed MarkupSafe-2.1.2 Pygments-2.14.0 alabaster-0.7.13 babel-2.11.0 certifi-2022.12.7 charset-normalizer-3.0.1 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.0 pillow-9.4.0 pytz-2022.7.1 readthedocs-sphinx-ext-2.2.0 recommonmark-0.5.0 requests-2.28.2 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.14

[rtd-command-info] start-time: 2023-02-15T17:14:28.079629Z, end-time: 2023-02-15T17:15:49.736361Z, duration: 81, exit-code: 0
python -m pip install --upgrade --upgrade-strategy eager --no-cache-dir .[doc]
Processing /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/latest
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Successfully built umap-learn scanpy session-info pynndescent python-igraph
Installing collected packages: texttable, stdlib_list, zipp, typing-extensions, tqdm, threadpoolctl, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, setuptools, session-info, pyyaml, python-dateutil, pyparsing, numpy, networkx, natsort, mdurl, llvmlite, kiwisolver, joblib, Jinja2, igraph, fonttools, dunamai, docutils, cycler, sphinxcontrib-jquery, scipy, python-igraph, patsy, pandas, numba, markdown-it-py, importlib-resources, importlib-metadata, h5py, get_version, contourpy, statsmodels, sphinx, scikit-learn, mdit-py-plugins, matplotlib, anndata, sphinx-rtd-theme, sphinx-autodoc-typehints, seaborn, scanpydoc, pynndescent, myst-parser, umap-learn, scanpy
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