Read the Docs build information
Build id: 1292263
Project: icb-scanpy
Version: 2409
Commit: 627758729f7a759373772ca428f5a01ab0d056ec
Date: 2023-02-09T11:28:25.854843Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2023-02-09T11:28:27.633055Z, end-time: 2023-02-09T11:28:30.603905Z, duration: 2, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/scverse/scanpy.git .
Cloning into '.'...

[rtd-command-info] start-time: 2023-02-09T11:28:30.951177Z, end-time: 2023-02-09T11:28:31.505918Z, duration: 0, exit-code: 0
git fetch origin --force --tags --prune --prune-tags --depth 50 pull/2409/head:external-2409
From https://github.com/scverse/scanpy
 * [new ref]           refs/pull/2409/head -> external-2409

[rtd-command-info] start-time: 2023-02-09T11:28:31.709769Z, end-time: 2023-02-09T11:28:31.937539Z, duration: 0, exit-code: 0
git checkout --force 627758729f7a759373772ca428f5a01ab0d056ec
Note: switching to '627758729f7a759373772ca428f5a01ab0d056ec'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 62775872 Leiden Louvain with Katana

[rtd-command-info] start-time: 2023-02-09T11:28:32.196770Z, end-time: 2023-02-09T11:28:32.277309Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-02-09T11:28:37.459390Z, end-time: 2023-02-09T11:28:37.546740Z, duration: 0, exit-code: 0
asdf global python 3.9.15


[rtd-command-info] start-time: 2023-02-09T11:28:38.061940Z, end-time: 2023-02-09T11:28:39.053101Z, duration: 0, exit-code: 0
python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.9.15.final.0-64 in 668ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/2409, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==21.2.3, setuptools==57.4.0, wheel==0.37.0
  activators BashActivator,CShellActivator,FishActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2023-02-09T11:28:39.266364Z, end-time: 2023-02-09T11:28:50.118573Z, duration: 10, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/2409/lib/python3.9/site-packages (21.2.3)
Collecting pip
  Downloading pip-23.0-py3-none-any.whl (2.1 MB)
Requirement already satisfied: setuptools<58.3.0 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/2409/lib/python3.9/site-packages (57.4.0)
Collecting setuptools<58.3.0
  Downloading setuptools-58.2.0-py3-none-any.whl (946 kB)
Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 57.4.0
    Uninstalling setuptools-57.4.0:
      Successfully uninstalled setuptools-57.4.0
  Attempting uninstall: pip
    Found existing installation: pip 21.2.3
    Uninstalling pip-21.2.3:
      Successfully uninstalled pip-21.2.3
Successfully installed pip-23.0 setuptools-58.2.0

[rtd-command-info] start-time: 2023-02-09T11:28:50.337539Z, end-time: 2023-02-09T11:29:01.528849Z, duration: 11, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0
Collecting pillow
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  Preparing metadata (setup.py): started
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Collecting six>=1.5
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Collecting Pygments>=2.0
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Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/2409/lib/python3.9/site-packages (from sphinx<2) (58.2.0)
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Collecting MarkupSafe>=2.0
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Building wheels for collected packages: mock
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=e82fa3a945941adb6baf7f4bf84e432a1a31c0f743fc1bd11a953222a7d405b9
  Stored in directory: /tmp/pip-ephem-wheel-cache-ha26dz_w/wheels/44/dc/c7/e89296d3612588db0aa6545ee3305c23b7a48b3a9922916e1f
Successfully built mock
Installing collected packages: snowballstemmer, pytz, mock, commonmark, charset-normalizer, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed MarkupSafe-2.1.2 Pygments-2.14.0 alabaster-0.7.13 babel-2.11.0 certifi-2022.12.7 charset-normalizer-3.0.1 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.0 pillow-9.4.0 pytz-2022.7.1 readthedocs-sphinx-ext-2.2.0 recommonmark-0.5.0 requests-2.28.2 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.14