Read the Docs build information Build id: 1282809 Project: tiledb-inc-tiledb-py Version: stable Commit: 93df0befc2c6758d0161cb1c99509c33d3a458ad Date: 2023-02-03T02:52:59.297848Z State: finished Success: False [rtd-command-info] start-time: 2023-02-03T02:53:01.066577Z, end-time: 2023-02-03T02:53:02.797836Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git . Cloning into '.'... [rtd-command-info] start-time: 2023-02-03T02:53:03.006416Z, end-time: 2023-02-03T02:53:03.111723Z, duration: 0, exit-code: 0 git checkout --force 93df0befc2c6758d0161cb1c99509c33d3a458ad Note: switching to '93df0befc2c6758d0161cb1c99509c33d3a458ad'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 93df0be Bump setup.py to 2.14.0 too (#1583) [rtd-command-info] start-time: 2023-02-03T02:53:03.312413Z, end-time: 2023-02-03T02:53:03.387641Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-02-03T02:53:04.470078Z, end-time: 2023-02-03T02:53:09.065015Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2023-02-03T02:53:09.243390Z, end-time: 2023-02-03T02:53:11.060707Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0 Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (23.0) Collecting setuptools<58.3.0 Downloading setuptools-58.2.0-py3-none-any.whl (946 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 27.0 MB/s eta 0:00:00 Installing collected packages: setuptools Attempting uninstall: setuptools Found existing installation: setuptools 67.1.0 Uninstalling setuptools-67.1.0: Successfully uninstalled setuptools-67.1.0 Successfully installed setuptools-58.2.0 [rtd-command-info] start-time: 2023-02-03T02:53:11.451160Z, end-time: 2023-02-03T02:53:18.181539Z, duration: 6, exit-code: 0 python -m pip install --upgrade --no-cache-dir pillow==5.4.1 mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0 Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 37.4 MB/s eta 0:00:00 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 236.0 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl (13 kB) Collecting commonmark==0.9.1 Downloading commonmark-0.9.1-py2.py3-none-any.whl (51 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 51.1/51.1 kB 158.9 MB/s eta 0:00:00 Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 187.2 MB/s eta 0:00:00 Collecting 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MarkupSafe-2.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting pytz>=2015.7 Downloading pytz-2022.7.1-py2.py3-none-any.whl (499 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 499.4/499.4 kB 232.7 MB/s eta 0:00:00 Collecting certifi>=2017.4.17 Downloading certifi-2022.12.7-py3-none-any.whl (155 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 155.3/155.3 kB 205.8 MB/s eta 0:00:00 Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.14-py2.py3-none-any.whl (140 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 140.6/140.6 kB 208.9 MB/s eta 0:00:00 Collecting charset-normalizer<4,>=2 Downloading charset_normalizer-3.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (170 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 170.5/170.5 kB 221.2 MB/s eta 0:00:00 Collecting idna<4,>=2.5 Downloading idna-3.4-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 177.0 MB/s eta 0:00:00 Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.0/94.0 kB 196.2 MB/s eta 0:00:00 Building wheels for collected packages: mock Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=93419f1b148f18dff8730a4a951ed286eb8861152fd05278936412f826788d64 Stored in directory: /tmp/pip-ephem-wheel-cache-5mrol3g2/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Successfully built mock Installing collected packages: snowballstemmer, pytz, mock, commonmark, charset-normalizer, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark Successfully installed MarkupSafe-2.1.2 Pygments-2.14.0 alabaster-0.7.13 babel-2.11.0 certifi-2022.12.7 charset-normalizer-3.0.1 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.0 pillow-5.4.1 pytz-2022.7.1 readthedocs-sphinx-ext-2.2.0 recommonmark-0.5.0 requests-2.28.2 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.14 [rtd-command-info] start-time: 2023-02-03T02:53:18.390760Z, end-time: 2023-02-03T02:53:25.105589Z, duration: 6, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r doc/requirements_doc.txt Ignoring contextvars: markers 'python_version < "3.7"' don't match your environment Ignoring dataclasses: markers 'python_version < "3.7"' don't match your environment Requirement already satisfied: docutils<0.18 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages (from -r doc/requirements_doc.txt (line 1)) (0.17.1) Collecting jinja2==3.0.0 Downloading Jinja2-3.0.0-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.4/133.4 kB 8.5 MB/s eta 0:00:00 Collecting numpy>=1.16.5 Downloading numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 15.7/15.7 MB 183.3 MB/s eta 0:00:00 Collecting cmake>=3.23 Downloading cmake-3.25.2-py2.py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 23.7/23.7 MB 188.6 MB/s eta 0:00:00 Collecting cython>=0.27 Downloading Cython-0.29.33-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (1.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.9/1.9 MB 213.1 MB/s eta 0:00:00 Collecting pybind11>=2.6.2 Downloading pybind11-2.10.3-py3-none-any.whl (222 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 222.4/222.4 kB 220.8 MB/s eta 0:00:00 Requirement already satisfied: setuptools<=58.3.0,>=42 in 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exit-code: 1 python ./setup.py install --force TILEDB_PATH from env: '' libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' running install running bdist_egg GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB superbuild. -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Could NOT find LZ4 (missing: LZ4_LIBRARIES LZ4_INCLUDE_DIR) -- Adding LZ4 as an external project CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:3075 (message): The DOWNLOAD_EXTRACT_TIMESTAMP option was not given and policy CMP0135 is not set. The policy's OLD behavior will be used. When using a URL download, the timestamps of extracted files should preferably be that of the time of extraction, otherwise code that depends on the extracted contents might not be rebuilt if the URL changes. The OLD behavior preserves the timestamps from the archive instead, but this is usually not what you want. Update your project to the NEW behavior or specify the DOWNLOAD_EXTRACT_TIMESTAMP option with a value of true to avoid this robustness issue. Call Stack (most recent call first): /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:4185 (_ep_add_download_command) cmake/Modules/FindLZ4_EP.cmake:84 (ExternalProject_Add) cmake/TileDB-Superbuild.cmake:88 (include) CMakeLists.txt:190 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find spdlog (missing: spdlog_DIR) -- Adding spdlog as an external project CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:3075 (message): The DOWNLOAD_EXTRACT_TIMESTAMP option was not given and policy CMP0135 is not set. The policy's OLD behavior will be used. When using a URL download, the timestamps of extracted files should preferably be that of the time of extraction, otherwise code that depends on the extracted contents might not be rebuilt if the URL changes. The OLD behavior preserves the timestamps from the archive instead, but this is usually not what you want. Update your project to the NEW behavior or specify the DOWNLOAD_EXTRACT_TIMESTAMP option with a value of true to avoid this robustness issue. Call Stack (most recent call first): /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:4185 (_ep_add_download_command) cmake/Modules/FindSpdlog_EP.cmake:68 (ExternalProject_Add) cmake/TileDB-Superbuild.cmake:89 (include) CMakeLists.txt:190 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Zlib, adding imported target: /usr/lib/x86_64-linux-gnu/libz.so -- Could NOT find Zstd (missing: ZSTD_LIBRARIES ZSTD_INCLUDE_DIR) -- Adding Zstd as an external project CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:3075 (message): The DOWNLOAD_EXTRACT_TIMESTAMP option was not given and policy CMP0135 is not set. The policy's OLD behavior will be used. When using a URL download, the timestamps of extracted files should preferably be that of the time of extraction, otherwise code that depends on the extracted contents might not be rebuilt if the URL changes. The OLD behavior preserves the timestamps from the archive instead, but this is usually not what you want. Update your project to the NEW behavior or specify the DOWNLOAD_EXTRACT_TIMESTAMP option with a value of true to avoid this robustness issue. Call Stack (most recent call first): /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:4185 (_ep_add_download_command) cmake/Modules/FindZstd_EP.cmake:88 (ExternalProject_Add) cmake/TileDB-Superbuild.cmake:91 (include) CMakeLists.txt:190 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Adding Magic as an external project -- Adding Webp as an external project -- Could NOT find CapnProto (missing: CapnProto_DIR) -- Cap'n Proto was not found -- Adding Capnp as an external project CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:3075 (message): The DOWNLOAD_EXTRACT_TIMESTAMP option was not given and policy CMP0135 is not set. The policy's OLD behavior will be used. When using a URL download, the timestamps of extracted files should preferably be that of the time of extraction, otherwise code that depends on the extracted contents might not be rebuilt if the URL changes. The OLD behavior preserves the timestamps from the archive instead, but this is usually not what you want. Update your project to the NEW behavior or specify the DOWNLOAD_EXTRACT_TIMESTAMP option with a value of true to avoid this robustness issue. Call Stack (most recent call first): /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:4185 (_ep_add_download_command) cmake/Modules/FindCapnp_EP.cmake:76 (ExternalProject_Add) cmake/TileDB-Superbuild.cmake:107 (include) CMakeLists.txt:190 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR: Found unsuitable version "1.0.2n", but required is at least "1.1.0" (found /usr/lib/x86_64-linux-gnu/libcrypto.so, ) -- Adding OpenSSL as an external project CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:3075 (message): The DOWNLOAD_EXTRACT_TIMESTAMP option was not given and policy CMP0135 is not set. The policy's OLD behavior will be used. When using a URL download, the timestamps of extracted files should preferably be that of the time of extraction, otherwise code that depends on the extracted contents might not be rebuilt if the URL changes. The OLD behavior preserves the timestamps from the archive instead, but this is usually not what you want. Update your project to the NEW behavior or specify the DOWNLOAD_EXTRACT_TIMESTAMP option with a value of true to avoid this robustness issue. Call Stack (most recent call first): /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:4185 (_ep_add_download_command) cmake/Modules/FindOpenSSL_EP.cmake:102 (ExternalProject_Add) cmake/TileDB-Superbuild.cmake:111 (include) CMakeLists.txt:190 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Could NOT find Curl (missing: CURL_LIBRARIES CURL_INCLUDE_DIR) -- Adding Curl as an external project -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") CMake Warning at cmake/Modules/FindCurl_EP.cmake:133 (message): TileDB FindZlib_EP did not set TILEDB_ZLIB_DIR. Falling back to autotools detection. Call Stack (most recent call first): cmake/TileDB-Superbuild.cmake:116 (include) CMakeLists.txt:190 (include) CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:3075 (message): The DOWNLOAD_EXTRACT_TIMESTAMP option was not given and policy CMP0135 is not set. The policy's OLD behavior will be used. When using a URL download, the timestamps of extracted files should preferably be that of the time of extraction, otherwise code that depends on the extracted contents might not be rebuilt if the URL changes. The OLD behavior preserves the timestamps from the archive instead, but this is usually not what you want. Update your project to the NEW behavior or specify the DOWNLOAD_EXTRACT_TIMESTAMP option with a value of true to avoid this robustness issue. Call Stack (most recent call first): /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:4185 (_ep_add_download_command) cmake/Modules/FindCurl_EP.cmake:157 (ExternalProject_Add) cmake/TileDB-Superbuild.cmake:116 (include) CMakeLists.txt:190 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find AWSSDK (missing: AWSSDK_DIR) -- Could NOT find AWSSDK -- Adding AWSSDK as an external project CMake Warning (dev) at /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:3075 (message): The DOWNLOAD_EXTRACT_TIMESTAMP option was not given and policy CMP0135 is not set. The policy's OLD behavior will be used. When using a URL download, the timestamps of extracted files should preferably be that of the time of extraction, otherwise code that depends on the extracted contents might not be rebuilt if the URL changes. The OLD behavior preserves the timestamps from the archive instead, but this is usually not what you want. Update your project to the NEW behavior or specify the DOWNLOAD_EXTRACT_TIMESTAMP option with a value of true to avoid this robustness issue. Call Stack (most recent call first): /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/cmake/data/share/cmake-3.25/Modules/ExternalProject.cmake:4185 (_ep_add_download_command) cmake/Modules/FindAWSSDK_EP.cmake:109 (ExternalProject_Add) cmake/TileDB-Superbuild.cmake:122 (include) CMakeLists.txt:190 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Not found clang-tidy -- Not found clang-format -- was unable to find clang-format -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen dot -- Install prefix is /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/dist -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build [ 2%] Creating directories for 'ep_spdlog' [ 2%] Creating directories for 'ep_lz4' [ 5%] Performing download step (download, verify and extract) for 'ep_spdlog' [ 5%] Performing download step (download, verify and extract) for 'ep_lz4' -- ep_lz4 download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_lz4-stamp/ep_lz4-download-*.log [ 6%] No update step for 'ep_lz4' [ 7%] No patch step for 'ep_lz4' [ 8%] Performing configure step for 'ep_lz4' -- ep_spdlog download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log [ 10%] No update step for 'ep_spdlog' [ 11%] Performing patch step for 'ep_spdlog' patching file include/spdlog/logger-inl.h [ 12%] Performing configure step for 'ep_spdlog' -- ep_lz4 configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_lz4-stamp/ep_lz4-configure-*.log [ 13%] Performing build step for 'ep_lz4' -- ep_spdlog configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_spdlog-stamp/ep_spdlog-configure-*.log [ 15%] Performing build step for 'ep_spdlog' -- ep_lz4 build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_lz4-stamp/ep_lz4-build-*.log [ 16%] Performing install step for 'ep_lz4' -- ep_lz4 install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_lz4-stamp/ep_lz4-install-*.log [ 17%] Completed 'ep_lz4' [ 17%] Built target ep_lz4 [ 18%] Creating directories for 'ep_zstd' [ 20%] Performing download step (download, verify and extract) for 'ep_zstd' -- ep_zstd download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_zstd-stamp/ep_zstd-download-*.log [ 21%] No update step for 'ep_zstd' [ 22%] No patch step for 'ep_zstd' [ 23%] Performing configure step for 'ep_zstd' -- ep_zstd configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_zstd-stamp/ep_zstd-configure-*.log [ 25%] Performing build step for 'ep_zstd' -- ep_spdlog build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_spdlog-stamp/ep_spdlog-build-*.log [ 26%] Performing install step for 'ep_spdlog' -- ep_spdlog install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_spdlog-stamp/ep_spdlog-install-*.log [ 27%] Completed 'ep_spdlog' [ 27%] Built target ep_spdlog [ 28%] Creating directories for 'ep_magic' [ 30%] Performing download step (git clone) for 'ep_magic' -- ep_magic download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_magic-stamp/ep_magic-download-*.log [ 31%] No update step for 'ep_magic' [ 32%] No patch step for 'ep_magic' [ 33%] Performing configure step for 'ep_magic' -- ep_magic configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_magic-stamp/ep_magic-configure-*.log [ 35%] Performing build step for 'ep_magic' -- ep_zstd build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_zstd-stamp/ep_zstd-build-*.log [ 36%] Performing install step for 'ep_zstd' -- ep_zstd install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_zstd-stamp/ep_zstd-install-*.log [ 37%] Completed 'ep_zstd' [ 37%] Built target ep_zstd [ 38%] Creating directories for 'ep_webp' [ 40%] Performing download step (git clone) for 'ep_webp' -- ep_webp download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_webp-stamp/ep_webp-download-*.log [ 41%] No update step for 'ep_webp' [ 42%] No patch step for 'ep_webp' [ 43%] Performing configure step for 'ep_webp' -- ep_webp configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_webp-stamp/ep_webp-configure-*.log [ 45%] Performing build step for 'ep_webp' -- ep_magic build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_magic-stamp/ep_magic-build-*.log [ 46%] Performing install step for 'ep_magic' -- ep_magic install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_magic-stamp/ep_magic-install-*.log [ 47%] Completed 'ep_magic' [ 47%] Built target ep_magic [ 48%] Creating directories for 'ep_capnp' [ 50%] Performing download step (download, verify and extract) for 'ep_capnp' -- ep_capnp download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_capnp-stamp/ep_capnp-download-*.log [ 51%] No update step for 'ep_capnp' [ 52%] No patch step for 'ep_capnp' [ 53%] Performing configure step for 'ep_capnp' -- ep_capnp configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_capnp-stamp/ep_capnp-configure-*.log [ 55%] Performing build step for 'ep_capnp' -- ep_webp build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_webp-stamp/ep_webp-build-*.log [ 56%] Performing install step for 'ep_webp' -- ep_webp install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_webp-stamp/ep_webp-install-*.log [ 57%] Completed 'ep_webp' [ 57%] Built target ep_webp [ 58%] Creating directories for 'ep_openssl' [ 60%] Performing download step (download, verify and extract) for 'ep_openssl' -- ep_openssl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_openssl-stamp/ep_openssl-download-*.log [ 61%] No update step for 'ep_openssl' [ 62%] No patch step for 'ep_openssl' [ 63%] Performing configure step for 'ep_openssl' -- ep_openssl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_openssl-stamp/ep_openssl-configure-*.log [ 65%] Performing build step for 'ep_openssl' -- ep_capnp build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_capnp-stamp/ep_capnp-build-*.log [ 66%] Performing install step for 'ep_capnp' -- ep_capnp install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_capnp-stamp/ep_capnp-install-*.log [ 67%] Completed 'ep_capnp' [ 67%] Built target ep_capnp -- ep_openssl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_openssl-stamp/ep_openssl-build-*.log [ 68%] Performing install step for 'ep_openssl' -- ep_openssl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_openssl-stamp/ep_openssl-install-*.log [ 70%] Completed 'ep_openssl' [ 70%] Built target ep_openssl [ 71%] Creating directories for 'ep_curl' [ 72%] Performing download step (download, verify and extract) for 'ep_curl' -- ep_curl download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_curl-stamp/ep_curl-download-*.log [ 73%] No update step for 'ep_curl' [ 75%] No patch step for 'ep_curl' [ 76%] Performing configure step for 'ep_curl' -- ep_curl configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_curl-stamp/ep_curl-configure-*.log [ 77%] Performing build step for 'ep_curl' -- ep_curl build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_curl-stamp/ep_curl-build-*.log [ 78%] Performing install step for 'ep_curl' -- ep_curl install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_curl-stamp/ep_curl-install-*.log [ 80%] Completed 'ep_curl' [ 80%] Built target ep_curl [ 81%] Creating directories for 'ep_awssdk' [ 82%] Performing download step (download, verify and extract) for 'ep_awssdk' -- ep_awssdk download command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_awssdk-stamp/ep_awssdk-download-*.log [ 83%] No update step for 'ep_awssdk' [ 85%] Performing patch step for 'ep_awssdk' patching file third-party/CMakeLists.txt patching file cmake/AWSSDKConfig.cmake Hunk #1 succeeded at 116 (offset -13 lines). [ 86%] Performing configure step for 'ep_awssdk' -- ep_awssdk configure command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_awssdk-stamp/ep_awssdk-configure-*.log [ 87%] Performing build step for 'ep_awssdk' -- ep_awssdk build command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_awssdk-stamp/ep_awssdk-build-*.log [ 88%] Performing install step for 'ep_awssdk' -- ep_awssdk install command succeeded. See also /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/src/ep_awssdk-stamp/ep_awssdk-install-*.log [ 90%] Completed 'ep_awssdk' [ 90%] Built target ep_awssdk [ 91%] Creating directories for 'tiledb' [ 92%] No download step for 'tiledb' [ 93%] No update step for 'tiledb' [ 95%] No patch step for 'tiledb' [ 96%] Performing configure step for 'tiledb' -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Starting TileDB regular build. -- Performing Test HAVE_AVX2 -- Performing Test HAVE_AVX2 - Success -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Bzip2: /usr/lib/x86_64-linux-gnu/libbz2.so -- Found LZ4: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/liblz4.a -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Zlib, adding imported target: /usr/lib/x86_64-linux-gnu/libz.so -- Found Zstd: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libzstd.a -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libcrypto.a (found suitable version "1.1.1i", minimum required is "1.1.0") -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libssl.a -- OpenSSL crypto: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libcrypto.a -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install;/usr/local/opt/openssl -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libssl.a -- OpenSSL crypto: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libcrypto.a -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install;/usr/local/opt/openssl -- The TileDB library is compiled with stats enabled. -- The TileDB library is compiled with query serialization enabled. -- Found OpenSSL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libssl.a -- OpenSSL crypto: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libcrypto.a -- root: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install;/usr/local/opt/openssl -- The TileDB library is compiled with S3 support. -- Found AWS SDK for C++, Version: 1.8.84, Install Root:/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install, Platform Prefix:, Platform Dependent Libraries: pthread;crypto;ssl;z;curl -- Found AWS lib: aws-cpp-sdk-s3 (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libaws-cpp-sdk-s3.a) -- Found AWS lib: aws-cpp-sdk-core (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libaws-cpp-sdk-core.a) -- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libaws-c-event-stream.a) -- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libaws-checksums.a) -- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libaws-c-common.a) -- Found AWS lib: aws-c-common (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libaws-c-common.a) -- Found AWS lib: aws-c-event-stream (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libaws-c-event-stream.a) -- Found AWS lib: aws-checksums (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libaws-checksums.a) -- Found AWS lib: aws-cpp-sdk-sts (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libaws-cpp-sdk-sts.a) -- Found AWS lib: aws-cpp-sdk-identity-management (/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libaws-cpp-sdk-identity-management.a) -- Found CURL: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libcurl.a (found version "7.74.0") -- Found CURL: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libcurl.a' (found version "") -- The TileDB library is compiled with HDFS support. -- Found Zlib, adding imported target: /usr/lib/x86_64-linux-gnu/libz.so -- Found libmagic: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/liblibmagic.a -- Found curl-config: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/bin/curl-config' -- Computed initial transitive Curl library links to TileDB targets: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libcurl.a;-L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib;-L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib;-lssl;-lzstd;-lzstd;-lz;-lcrypto;-ldl;-lpthread;-pthread' -- Adding final transitive Curl library links to TileDB targets: '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib/libcurl.a;-L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib;-L/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/externals/install/lib;-lzstd;-lzstd;-ldl;-lpthread;-pthread' -- Found CapnProto lib: capnp -- Found CapnProto lib: kj -- Found CapnProto lib: capnp-json -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.34") -- Configuring done -- Generating done -- Build files have been written to: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build/tiledb [ 97%] Performing build step for 'tiledb' [ 0%] Generating ../magic_mgc_gzipped.bin [ 0%] Building CXX object tiledb/common/CMakeFiles/stringx.dir/stdx_string.cc.o [ 0%] Built target gen_mgc_unarch [ 0%] Building CXX object tiledb/common/CMakeFiles/baseline.dir/logger.cc.o [ 0%] Built target stringx [ 1%] Building CXX object tiledb/api/c_api_test_support/storage_manager_stub/CMakeFiles/storage_manager_stub.dir/storage_manager_stub.cc.o [ 1%] Built target storage_manager_stub [ 1%] Building CXX object tiledb/sm/misc/CMakeFiles/constants.dir/constants.cc.o [ 1%] Built target constants [ 3%] Building CXX object tiledb/sm/misc/CMakeFiles/math.dir/tdb_math.cc.o [ 3%] Built target math [ 3%] Building CXX object tiledb/common/types/CMakeFiles/datum.dir/untyped_datum.cc.o [ 3%] Building CXX object tiledb/common/types/CMakeFiles/datum.dir/dynamic_typed_datum.cc.o [ 3%] Built target datum [ 3%] Building CXX object tiledb/common/CMakeFiles/baseline.dir/governor/governor.cc.o [ 3%] Building CXX object tiledb/common/CMakeFiles/baseline.dir/dynamic_memory/dynamic_memory.cc.o [ 5%] Building CXX object tiledb/common/CMakeFiles/baseline.dir/heap_profiler.cc.o [ 5%] Building CXX object tiledb/common/CMakeFiles/baseline.dir/heap_memory.cc.o [ 5%] Building CXX object tiledb/common/CMakeFiles/baseline.dir/exception/exception.cc.o [ 5%] Building CXX object tiledb/common/CMakeFiles/baseline.dir/exception/status.cc.o [ 5%] Building CXX object tiledb/sm/misc/CMakeFiles/time.dir/tdb_time.cc.o [ 5%] Built target time [ 5%] Building CXX object tiledb/sm/compressors/CMakeFiles/unit_link_webp.dir/test/link_webp_test1.cc.o [ 5%] Linking CXX executable unit_link_webp [ 5%] Built target unit_link_webp [ 5%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/heap_memory.cc.o [ 5%] Built target baseline [ 5%] Building CXX object tiledb/sm/stats/CMakeFiles/stats.dir/stats.cc.o [ 5%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/heap_profiler.cc.o [ 5%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/logger.cc.o [ 5%] Built target stats [ 7%] Building CXX object tiledb/api/c_api/error/CMakeFiles/capi_error.dir/error_api.cc.o [ 7%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/memory.cc.o [ 7%] Built target capi_error [ 7%] Building CXX object tiledb/sm/misc/CMakeFiles/parse_argument.dir/parse_argument.cc.o [ 7%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/stdx_string.cc.o [ 9%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/interval/interval.cc.o [ 9%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/common/types/dynamic_typed_datum.cc.o [ 9%] Built target parse_argument [ 9%] Building CXX object tiledb/common/thread_pool/CMakeFiles/thread_pool.dir/thread_pool.cc.o [ 9%] Building CXX object tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/platform/cert_file.cc.o In file included from /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/tiledb/platform/cert_file.cc:33:0: /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/tiledb/../tiledb/platform/cert_file.h:53:10: fatal error: filesystem: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/build.make:173: recipe for target 'tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/platform/cert_file.cc.o' failed make[5]: *** [tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/platform/cert_file.cc.o] Error 1 CMakeFiles/Makefile2:1376: recipe for target 'tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/all' failed make[4]: *** [tiledb/CMakeFiles/TILEDB_CORE_OBJECTS.dir/all] Error 2 make[4]: *** Waiting for unfinished jobs.... [ 9%] Built target thread_pool Makefile:145: recipe for target 'all' failed make[3]: *** [all] Error 2 CMakeFiles/tiledb.dir/build.make:85: recipe for target 'tiledb-prefix/src/tiledb-stamp/tiledb-build' failed make[2]: *** [tiledb-prefix/src/tiledb-stamp/tiledb-build] Error 2 make[1]: *** [CMakeFiles/tiledb.dir/all] Error 2 CMakeFiles/Makefile2:347: recipe for target 'CMakeFiles/tiledb.dir/all' failed Makefile:90: recipe for target 'all' failed make: *** [all] Error 2 /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools_scm/git.py:135: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable" is shallow and may cause errors warnings.warn(f'"{wd.path}" is shallow and may cause errors') ext_modules: [, , ] tiledb_ext: main_ext: tiledb_cc_ext: tiledb_ext.library_dirs: [] libtiledb_exists checking 'library_dirs': [] libtiledb_exists found: 'None' Downloading TileDB package from 2.14.0... Building libtiledb in directory /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/build... CMake configure command: ['cmake', '-DCMAKE_INSTALL_PREFIX=/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0/dist', '-DTILEDB_TESTS=OFF', '-DTILEDB_S3=ON', '-DTILEDB_WERROR=OFF', '-DTILEDB_HDFS=ON', '-DTILEDB_INSTALL_LIBDIR=lib', '-DTILEDB_CPP_API=ON', '-DTILEDB_LOG_OUTPUT_ON_FAILURE=ON', '-DTILEDB_FORCE_ALL_DEPS:BOOL=OFF', '-DTILEDB_SERIALIZATION:BOOL=ON', '-DCMAKE_BUILD_TYPE=Release', '/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/stable/build/TileDB-2.14.0'] Traceback (most recent call last): File "./setup.py", line 806, in "Programming Language :: Python :: 3.9", File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools/__init__.py", line 153, in setup return distutils.core.setup(**attrs) File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/core.py", line 148, in setup dist.run_commands() File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools/command/install.py", line 67, in run self.do_egg_install() File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/stable/lib/python3.7/site-packages/setuptools/command/install.py", line 109, in do_egg_install self.run_command('bdist_egg') File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "./setup.py", line 501, in run find_or_install_libtiledb(self) File "./setup.py", line 295, in find_or_install_libtiledb prefix_dir = build_libtiledb(src_dir) File "./setup.py", line 257, in build_libtiledb subprocess.check_call(build_cmd, cwd=libtiledb_build_dir) File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/subprocess.py", line 363, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['make', '-j2']' returned non-zero exit status 2.