Read the Docs build information Build id: 1265405 Project: mdolab-pygeo Version: latest Commit: 0e67ef48ac9ff9f6fd06f9dbe81dc932c0530bef Date: 2023-01-23T18:37:59.375355Z State: finished Success: True [rtd-command-info] start-time: 2023-01-23T18:38:01.762588Z, end-time: 2023-01-23T18:38:06.317559Z, duration: 4, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/mdolab/pygeo.git . Cloning into '.'... [rtd-command-info] start-time: 2023-01-23T18:38:06.507490Z, end-time: 2023-01-23T18:38:06.858931Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 0e67ef4 SVD composite DVs for VSP and ESP (#170) [rtd-command-info] start-time: 2023-01-23T18:38:07.039851Z, end-time: 2023-01-23T18:38:07.103239Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-01-23T18:38:08.350647Z, end-time: 2023-01-23T18:38:13.084202Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/envs/latest/bin/python Installing setuptools, pip, wheel... done. 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appdirs Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Installing collected packages: appdirs, zipp, typing-extensions, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, rply, pyyaml, numpy, latexcodec, pybtex, importlib-metadata, baron, sphinx, redbaron, pybtex-docutils, sphinxcontrib-bibtex, sphinxcontrib-autoprogram, sphinx-tabs, sphinx-rtd-theme, sphinx-prompt, sphinx-copybutton, numpydoc, sphinx_mdolab_theme Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed appdirs-1.4.4 baron-0.10.1 importlib-metadata-6.0.0 latexcodec-2.0.1 numpy-1.21.6 numpydoc-1.5.0 pybtex-0.24.0 pybtex-docutils-1.0.2 pyyaml-6.0 redbaron-0.9.2 rply-0.7.8 sphinx-5.3.0 sphinx-copybutton-0.5.1 sphinx-prompt-1.5.0 sphinx-rtd-theme-1.1.1 sphinx-tabs-3.4.0 sphinx_mdolab_theme-1.4.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-autoprogram-0.1.7 sphinxcontrib-bibtex-2.5.0 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 typing-extensions-4.4.0 zipp-3.11.0 [rtd-command-info] start-time: 2023-01-23T18:38:30.507802Z, end-time: 2023-01-23T18:38:30.585681Z, duration: 0, exit-code: 0 cat doc/conf.py from sphinx_mdolab_theme.config import * # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. import os import sys sys.path.insert(0, os.path.abspath("../")) sys.path.insert(0, os.path.abspath("../../")) sys.path.insert(0, os.path.abspath("./_exts")) # -- Project information ----------------------------------------------------- project = "pyGeo" # -- General configuration ----------------------------------------------------- # Built-in Sphinx extensions are already contained in the imported variable # here we add external extensions, which must also be added to requirements.txt # so that RTD can import and use them extensions.extend( [ "sphinx_mdolab_theme.ext.embed_code", "sphinxcontrib.bibtex", ] ) # mock import for autodoc autodoc_mock_imports = ["numpy", "mpi4py", "scipy", "pyspline", "baseclasses", "pysurf", "prefoil", "pyOCSM", "openvsp"] # This sets the bibtex bibliography file(s) to reference in the documentation bibtex_bibfiles = ["ref.bib"] ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.com/websupport' websupport2_static_url = 'https://assets.readthedocs.com/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//mdolab-pygeo.readthedocs-hosted.com/_/downloads/en/latest/pdf/"), ("html", "//mdolab-pygeo.readthedocs-hosted.com/_/downloads/en/latest/htmlzip/"), ("epub", "//mdolab-pygeo.readthedocs-hosted.com/_/downloads/en/latest/epub/"), ], 'subprojects': [ ], 'slug': 'mdolab-pygeo', 'name': u'pygeo', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'https://mdolab-pygeo.readthedocs-hosted.com/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'https://readthedocs.com', 'github_user': 'mdolab', 'proxied_api_host': '/_', 'github_repo': 'pygeo', 'github_version': 'main', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'main', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'main', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '0e67ef48', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/mdolab-pygeo/builds/1265405/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2023-01-23T18:38:30.799405Z, end-time: 2023-01-23T18:38:43.530492Z, duration: 12, exit-code: 0 python -m sphinx -T -E -b html -d _build/doctrees -D language=en . _build/html Running Sphinx v5.3.0 making output directory... done checking bibtex cache... out of date parsing bibtex file /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/checkouts/latest/doc/ref.bib... parsed 1 entries [autosummary] generating autosummary for: API.rst, DVConstraints.rst, DVGeometry.rst, DVGeometryCST.rst, DVGeometryESP.rst, DVGeometryMulti.rst, DVGeometryVSP.rst, advanced_ffd.rst, contribute.rst, cst_tutorial.rst, esp_airfoil.rst, geo_utils.rst, getting_started.rst, index.rst, install.rst, introduction.rst, pyGeo.rst, tutorial.rst, update_pygeo.rst loading intersphinx inventory from https://mdolab-pygeo.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-pyoptsparse.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-baseclasses.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-idwarp.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-adflow.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-pyhyp.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-multipoint.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-pyspline.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-mach-aero.readthedocs-hosted.com/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [html]: targets for 19 source files that are out of date updating environment: [new config] 19 added, 0 changed, 0 removed reading sources... 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[rtd-command-info] start-time: 2023-01-23T18:38:43.747417Z, end-time: 2023-01-23T18:38:51.746733Z, duration: 7, exit-code: 0 python -m sphinx -T -E -b readthedocssinglehtmllocalmedia -d _build/doctrees -D language=en . _build/localmedia Running Sphinx v5.3.0 making output directory... done checking bibtex cache... out of date parsing bibtex file /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/checkouts/latest/doc/ref.bib... parsed 1 entries [autosummary] generating autosummary for: API.rst, DVConstraints.rst, DVGeometry.rst, DVGeometryCST.rst, DVGeometryESP.rst, DVGeometryMulti.rst, DVGeometryVSP.rst, advanced_ffd.rst, contribute.rst, cst_tutorial.rst, esp_airfoil.rst, geo_utils.rst, getting_started.rst, index.rst, install.rst, introduction.rst, pyGeo.rst, tutorial.rst, update_pygeo.rst loading intersphinx inventory from https://mdolab-pygeo.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-pyoptsparse.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-baseclasses.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-idwarp.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-adflow.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-pyhyp.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-multipoint.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-pyspline.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-mach-aero.readthedocs-hosted.com/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [new config] 19 added, 0 changed, 0 removed reading sources... 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mdolab-pygeo-latest/index.html (deflated 87%) [rtd-command-info] start-time: 2023-01-23T18:38:54.028453Z, end-time: 2023-01-23T18:38:56.629553Z, duration: 2, exit-code: 0 python -m sphinx -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v5.3.0 making output directory... done loading pickled environment... checking bibtex cache... up to date done [autosummary] generating autosummary for: API.rst, DVConstraints.rst, DVGeometry.rst, DVGeometryCST.rst, DVGeometryESP.rst, DVGeometryMulti.rst, DVGeometryVSP.rst, advanced_ffd.rst, contribute.rst, cst_tutorial.rst, esp_airfoil.rst, geo_utils.rst, getting_started.rst, index.rst, install.rst, introduction.rst, pyGeo.rst, tutorial.rst, update_pygeo.rst building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found processing pygeo.tex... index introduction contribute install tutorial getting_started 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Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-pygeo.pdf (121 pages, 2640121 bytes). Transcript written on mdolab-pygeo.log. Latexmk: Index file 'mdolab-pygeo.idx' was written Latexmk: Missing input file: 'mdolab-pygeo.ind' from line 'No file mdolab-pygeo.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'mdolab-pygeo.pdf' Latexmk: List of undefined refs and citations: Reference `geo_utils:module-pygeo.geo_utils.ffd_generation' on page 117 undefined on input line 9378 Reference `geo_utils:module-pygeo.geo_utils.file_io' on page 117 undefined on input line 9379 Reference `geo_utils:module-pygeo.geo_utils.remove_duplicates' on page 117 undefined on input line 9380 Latexmk: Summary of warnings: Latex failed to resolve 3 reference(s) Rule 'makeindex mdolab-pygeo.idx': File changes, etc: Non-existent destination files: 'mdolab-pygeo.ind' ------------ Run number 1 of rule 'makeindex mdolab-pygeo.idx' ------------ ------------ Running 'makeindex -s python.ist -o "mdolab-pygeo.ind" "mdolab-pygeo.idx"' ------------ Latexmk: applying rule 'makeindex mdolab-pygeo.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). 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[41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Underfull \hbox (badness 10000) in paragraph at lines 2642--2646 \T1/qtm/b/n/10 Note: \T1/qtm/m/n/10 These con-straints \T1/qtm/m/it/10 will \T 1/qtm/m/n/10 be added to py-OptSparse au-to-mat-i-cally with a call to [51] Underfull \hbox (badness 10000) in paragraph at lines 2755--2759 \T1/qtm/b/n/10 Note: \T1/qtm/m/n/10 These con-straints will be added to py-Opt Sparse au-to-mat-i-cally with a call to [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Overfull \vbox (1.67963pt too high) detected at line 3697 [62] [63] [64] [65] [66] [67] [68] [69] Underfull \hbox (badness 10000) in paragraph at lines 4459--4464 \T1/qtm/m/n/10 are unique to py-OptSparse. Only use-ful when us-ing mul-ti-ple DV-Geos with [70] [71] [72] [73] ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.4842 \item {} \begin{description} [74] Overfull \vbox (0.67963pt too high) detected at line 5010 [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] (./mdolab-pygeo.ind [118] Overfull \hbox (7.84238pt too wide) in paragraph at lines 8--10 []\T1/txtt/m/n/10 addChild() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py-geo.parameteriz ation.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/txtt/m/n/10 addCircularityConstraint() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py - Underfull \hbox (badness 10000) in paragraph at lines 10--12 \T1/qtm/m/it/10 geo.constraints.DVCon.DVConstraints Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/txtt/m/n/10 addColinearityConstraint() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py - Underfull \hbox (badness 10000) in paragraph 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wide) in paragraph at lines 30--32 []\T1/txtt/m/n/10 addGlobalDV() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py-geo.paramete rization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/txtt/m/n/10 addIntersection() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Overfull \hbox (24.59254pt too wide) in paragraph at lines 32--34 \T1/qtm/m/it/10 geo.parameterization.DVGeoMulti.DVGeometryMulti Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/txtt/m/n/10 addLERadiusConstraints() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 34--36 \T1/qtm/m/it/10 geo.constraints.DVCon.DVConstraints Underfull \hbox (badness 10000) in paragraph at lines 36--38 []\T1/txtt/m/n/10 addLeTeConstraints() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 36--38 \T1/qtm/m/it/10 geo.constraints.DVCon.DVConstraints Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/txtt/m/n/10 addLinearConstraintsShape() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 p y- Underfull \hbox (badness 10000) in paragraph at lines 38--40 \T1/qtm/m/it/10 geo.constraints.DVCon.DVConstraints Overfull \hbox (18.34235pt too wide) in paragraph at lines 40--42 []\T1/txtt/m/n/10 addLocalDV() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py-geo.parameter ization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 42--44 []\T1/txtt/m/n/10 addLocalSectionDV() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 42--44 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/txtt/m/n/10 addLocationConstraints1D() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py - Underfull \hbox (badness 10000) in paragraph at lines 44--46 \T1/qtm/m/it/10 geo.constraints.DVCon.DVConstraints Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/txtt/m/n/10 addMonotonicConstraints() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- 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at lines 66--68 []\T1/txtt/m/n/10 addSpanwiseLocalDV() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 66--68 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/txtt/m/n/10 addSurfaceAreaConstraint() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py - Underfull \hbox (badness 10000) in paragraph at lines 68--70 \T1/qtm/m/it/10 geo.constraints.DVCon.DVConstraints Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/txtt/m/n/10 addThicknessConstraints1D() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 p y- Underfull \hbox (badness 10000) in paragraph at lines 70--72 \T1/qtm/m/it/10 geo.constraints.DVCon.DVConstraints [119] Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/txtt/m/n/10 addThicknessConstraints2D() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 p y- Underfull \hbox (badness 10000) in paragraph at lines 72--74 \T1/qtm/m/it/10 geo.constraints.DVCon.DVConstraints Underfull \hbox 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10000) in paragraph at lines 117--119 []\T1/txtt/m/n/10 computeTotalJacobian() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 117--119 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 119--121 []\T1/txtt/m/n/10 computeTotalJacobianCS() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 119--121 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 121--123 []\T1/txtt/m/n/10 computeTotalJacobianFD() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 121--123 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 123--125 []\T1/txtt/m/n/10 convertDictToSensitivity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py - Underfull \hbox (badness 10000) in paragraph at lines 123--125 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 125--127 []\T1/txtt/m/n/10 convertSensitivityToDict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py - Underfull \hbox (badness 10000) in paragraph at lines 125--127 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 127--129 []\T1/txtt/m/n/10 createDesignFile() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Overfull \hbox (14.19255pt too wide) in paragraph at lines 127--129 \T1/qtm/m/it/10 geo.parameterization.DVGeoVSP.DVGeometryVSP Underfull \hbox (badness 10000) in paragraph at lines 129--131 []\T1/txtt/m/n/10 createFittedWingFFD() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule py- Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/txtt/m/n/10 demoDesignVars() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 134--136 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-pygeo.pdf (127 pages, 2675715 bytes). Transcript written on mdolab-pygeo.log. Latexmk: Index file 'mdolab-pygeo.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'mdolab-pygeo.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'mdolab-pygeo.aux' 'mdolab-pygeo.out' 'mdolab-pygeo.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="mdolab-pygeo" "pygeo.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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[41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Underfull \hbox (badness 10000) in paragraph at lines 2642--2646 \T1/qtm/b/n/10 Note: \T1/qtm/m/n/10 These con-straints \T1/qtm/m/it/10 will \T 1/qtm/m/n/10 be added to py-OptSparse au-to-mat-i-cally with a call to [51] Underfull \hbox (badness 10000) in paragraph at lines 2755--2759 \T1/qtm/b/n/10 Note: \T1/qtm/m/n/10 These con-straints will be added to py-Opt Sparse au-to-mat-i-cally with a call to [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Overfull \vbox (1.67963pt too high) detected at line 3697 [62] [63] [64] [65] [66] [67] [68] [69] Underfull \hbox (badness 10000) in paragraph at lines 4459--4464 \T1/qtm/m/n/10 are unique to py-OptSparse. Only use-ful when us-ing mul-ti-ple DV-Geos with [70] [71] [72] [73] ! LaTeX Error: Too deeply nested. See the LaTeX manual or LaTeX Companion for explanation. 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computeCSTdydw() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Overfull \hbox (15.01254pt too wide) in paragraph at lines 109--111 \T1/qtm/m/it/10 geo.parameterization.DVGeoCST.DVGeometryCST Underfull \hbox (badness 10000) in paragraph at lines 111--113 []\T1/txtt/m/n/10 computeCSTfromCoords() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Overfull \hbox (15.01254pt too wide) in paragraph at lines 111--113 \T1/qtm/m/it/10 geo.parameterization.DVGeoCST.DVGeometryCST Underfull \hbox (badness 10000) in paragraph at lines 113--115 []\T1/txtt/m/n/10 computeDVJacobian() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 113--115 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 115--117 []\T1/txtt/m/n/10 computeShapeFunctions() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Overfull \hbox (15.01254pt too wide) in paragraph at lines 115--117 \T1/qtm/m/it/10 geo.parameterization.DVGeoCST.DVGeometryCST Underfull \hbox (badness 10000) in paragraph at lines 117--119 []\T1/txtt/m/n/10 computeTotalJacobian() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 117--119 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 119--121 []\T1/txtt/m/n/10 computeTotalJacobianCS() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 119--121 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 121--123 []\T1/txtt/m/n/10 computeTotalJacobianFD() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 121--123 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 123--125 []\T1/txtt/m/n/10 convertDictToSensitivity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py - Underfull \hbox (badness 10000) in paragraph at lines 123--125 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 125--127 []\T1/txtt/m/n/10 convertSensitivityToDict() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py - Underfull \hbox (badness 10000) in paragraph at lines 125--127 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in paragraph at lines 127--129 []\T1/txtt/m/n/10 createDesignFile() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Overfull \hbox (14.19255pt too wide) in paragraph at lines 127--129 \T1/qtm/m/it/10 geo.parameterization.DVGeoVSP.DVGeometryVSP Underfull \hbox (badness 10000) in paragraph at lines 129--131 []\T1/txtt/m/n/10 createFittedWingFFD() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule py- Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/txtt/m/n/10 demoDesignVars() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 134--136 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry Underfull \hbox (badness 10000) in 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[]\T1/txtt/m/n/10 zeroJacobians() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 py- Underfull \hbox (badness 10000) in paragraph at lines 349--351 \T1/qtm/m/it/10 geo.parameterization.DVGeo.DVGeometry [123]) (./mdolab-pygeo.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on mdolab-pygeo.pdf (127 pages, 2675889 bytes). Transcript written on mdolab-pygeo.log. Latexmk: Index file 'mdolab-pygeo.idx' was written Latexmk: Log file says output to 'mdolab-pygeo.pdf' Latexmk: Errors, in force_mode: so I tried finishing targets Collected error summary (may duplicate other messages): pdflatex: Command for 'pdflatex' gave return code 256 [rtd-command-info] start-time: 2023-01-23T18:39:06.664172Z, end-time: 2023-01-23T18:39:06.749367Z, duration: 0, exit-code: 0 mv -f /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/checkouts/latest/doc/_build/latex/mdolab-pygeo.pdf /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/artifacts/latest/sphinx_pdf/mdolab-pygeo.pdf [rtd-command-info] start-time: 2023-01-23T18:39:06.928366Z, end-time: 2023-01-23T18:39:15.204167Z, duration: 8, exit-code: 0 python -m sphinx -T -E -b epub -d _build/doctrees -D language=en . _build/epub Running Sphinx v5.3.0 making output directory... done checking bibtex cache... out of date parsing bibtex file /home/docs/checkouts/readthedocs.org/user_builds/mdolab-pygeo/checkouts/latest/doc/ref.bib... parsed 1 entries WARNING: conf value "version" should not be empty for EPUB3 [autosummary] generating autosummary for: API.rst, DVConstraints.rst, DVGeometry.rst, DVGeometryCST.rst, DVGeometryESP.rst, DVGeometryMulti.rst, DVGeometryVSP.rst, advanced_ffd.rst, contribute.rst, cst_tutorial.rst, esp_airfoil.rst, geo_utils.rst, getting_started.rst, index.rst, install.rst, introduction.rst, pyGeo.rst, tutorial.rst, update_pygeo.rst loading intersphinx inventory from https://mdolab-pygeo.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-pyoptsparse.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-baseclasses.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-idwarp.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-adflow.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-pyhyp.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-multipoint.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-pyspline.readthedocs-hosted.com/en/latest/objects.inv... loading intersphinx inventory from https://mdolab-mach-aero.readthedocs-hosted.com/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [epub]: targets for 19 source files that are out of date updating environment: [new config] 19 added, 0 changed, 0 removed reading sources... 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