Read the Docs build information
Build id: 1259987
Project: tiledb-inc-tiledb-py
Version: latest
Commit: 3b3ca9fee4ef043d2021ee1141d0ba2ff53f281a
Date: 2023-01-19T01:47:47.707177Z
State: finished
Success: False


[rtd-command-info] start-time: 2023-01-19T01:47:49.716451Z, end-time: 2023-01-19T01:47:53.744781Z, duration: 4, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/TileDB-Inc/TileDB-Py.git .
Cloning into '.'...

[rtd-command-info] start-time: 2023-01-19T01:47:53.995605Z, end-time: 2023-01-19T01:47:54.089584Z, duration: 0, exit-code: 0
git checkout --force origin/dev
Note: switching to 'origin/dev'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 3b3ca9f Release 0.20.0 against TileDB 2.14.0 (#1581)

[rtd-command-info] start-time: 2023-01-19T01:47:54.282852Z, end-time: 2023-01-19T01:47:54.362601Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-01-19T01:47:55.325187Z, end-time: 2023-01-19T01:47:59.912592Z, duration: 4, exit-code: 0
python3.7 -mvirtualenv 
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2023-01-19T01:48:00.117412Z, end-time: 2023-01-19T01:48:01.904229Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (22.3.1)
Collecting setuptools<58.3.0
  Downloading setuptools-58.2.0-py3-none-any.whl (946 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 946.1/946.1 kB 28.5 MB/s eta 0:00:00
Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 66.0.0
    Uninstalling setuptools-66.0.0:
      Successfully uninstalled setuptools-66.0.0
Successfully installed setuptools-58.2.0

[rtd-command-info] start-time: 2023-01-19T01:48:02.165087Z, end-time: 2023-01-19T01:48:08.743767Z, duration: 6, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow==5.4.1 mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0
Collecting pillow==5.4.1
  Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 43.7 MB/s eta 0:00:00
Collecting mock==1.0.1
  Downloading mock-1.0.1.zip (861 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 241.6 MB/s eta 0:00:00
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting alabaster!=0.7.5,<0.8,>=0.7
  Downloading alabaster-0.7.13-py3-none-any.whl (13 kB)
Collecting commonmark==0.9.1
  Downloading commonmark-0.9.1-py2.py3-none-any.whl (51 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 51.1/51.1 kB 169.0 MB/s eta 0:00:00
Collecting recommonmark==0.5.0
  Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB)
Collecting sphinx<2
  Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 206.1 MB/s eta 0:00:00
Collecting sphinx-rtd-theme<0.5
  Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.4/6.4 MB 193.7 MB/s eta 0:00:00
Collecting readthedocs-sphinx-ext<2.3
  Downloading readthedocs_sphinx_ext-2.2.0-py2.py3-none-any.whl (11 kB)
Collecting jinja2<3.1.0
  Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.6/133.6 kB 210.9 MB/s eta 0:00:00
Collecting docutils>=0.11
  Downloading docutils-0.19-py3-none-any.whl (570 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 570.5/570.5 kB 238.2 MB/s eta 0:00:00
Collecting six>=1.5
  Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting docutils>=0.11
  Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 575.5/575.5 kB 235.7 MB/s eta 0:00:00
Collecting snowballstemmer>=1.1
  Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 201.5 MB/s eta 0:00:00
Collecting requests>=2.0.0
  Downloading requests-2.28.2-py3-none-any.whl (62 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.8/62.8 kB 167.6 MB/s eta 0:00:00
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from sphinx<2) (58.2.0)
Collecting Pygments>=2.0
  Downloading Pygments-2.14.0-py3-none-any.whl (1.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 242.9 MB/s eta 0:00:00
Collecting babel!=2.0,>=1.3
  Downloading Babel-2.11.0-py3-none-any.whl (9.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.5/9.5 MB 194.7 MB/s eta 0:00:00
Collecting imagesize
  Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
Collecting packaging
  Downloading packaging-23.0-py3-none-any.whl (42 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.7/42.7 kB 166.6 MB/s eta 0:00:00
Collecting sphinxcontrib-websupport
  Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB)
Collecting MarkupSafe>=2.0
  Downloading MarkupSafe-2.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
Collecting pytz>=2015.7
  Downloading pytz-2022.7.1-py2.py3-none-any.whl (499 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 499.4/499.4 kB 240.5 MB/s eta 0:00:00
Collecting charset-normalizer<4,>=2
  Downloading charset_normalizer-3.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (170 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 170.5/170.5 kB 222.6 MB/s eta 0:00:00
Collecting urllib3<1.27,>=1.21.1
  Downloading urllib3-1.26.14-py2.py3-none-any.whl (140 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 140.6/140.6 kB 195.0 MB/s eta 0:00:00
Collecting certifi>=2017.4.17
  Downloading certifi-2022.12.7-py3-none-any.whl (155 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 155.3/155.3 kB 209.6 MB/s eta 0:00:00
Collecting idna<4,>=2.5
  Downloading idna-3.4-py3-none-any.whl (61 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 191.9 MB/s eta 0:00:00
Collecting sphinxcontrib-serializinghtml
  Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.0/94.0 kB 190.0 MB/s eta 0:00:00
Building wheels for collected packages: mock
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=296a0fa0dc9747c42d8328128141fe68e841f18fd27f2533cfa4e4133c533902
  Stored in directory: /tmp/pip-ephem-wheel-cache-joqrft3x/wheels/d1/33/8e/f9d24f00cc130866aacfe7c3bc15571217e2b22cc4c4e1b443
Successfully built mock
Installing collected packages: snowballstemmer, pytz, mock, commonmark, charset-normalizer, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed MarkupSafe-2.1.2 Pygments-2.14.0 alabaster-0.7.13 babel-2.11.0 certifi-2022.12.7 charset-normalizer-3.0.1 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.0 pillow-5.4.1 pytz-2022.7.1 readthedocs-sphinx-ext-2.2.0 recommonmark-0.5.0 requests-2.28.2 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.14

[rtd-command-info] start-time: 2023-01-19T01:48:08.985685Z, end-time: 2023-01-19T01:48:15.677488Z, duration: 6, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r doc/requirements_doc.txt
Ignoring contextvars: markers 'python_version < "3.7"' don't match your environment
Ignoring dataclasses: markers 'python_version < "3.7"' don't match your environment
Requirement already satisfied: docutils<0.18 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r doc/requirements_doc.txt (line 1)) (0.17.1)
Collecting jinja2==3.0.0
  Downloading Jinja2-3.0.0-py3-none-any.whl (133 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.4/133.4 kB 6.4 MB/s eta 0:00:00
Collecting numpy>=1.16.5
  Downloading numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 15.7/15.7 MB 164.8 MB/s eta 0:00:00
Collecting cmake>=3.23
  Downloading cmake-3.25.0-py2.py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23.7 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 23.7/23.7 MB 174.8 MB/s eta 0:00:00
Collecting cython>=0.27
  Downloading Cython-0.29.33-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (1.9 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.9/1.9 MB 207.1 MB/s eta 0:00:00
Collecting pybind11>=2.6.2
  Downloading pybind11-2.10.3-py3-none-any.whl (222 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 222.4/222.4 kB 227.9 MB/s eta 0:00:00
Requirement already satisfied: setuptools<=58.3.0,>=42 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r doc/../requirements_dev.txt (line 9)) (58.2.0)
Collecting setuptools_scm>=1.5.4
  Downloading setuptools_scm-7.1.0-py3-none-any.whl (43 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 43.8/43.8 kB 166.7 MB/s eta 0:00:00
Requirement already satisfied: wheel>=0.30 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from -r doc/../requirements_dev.txt (line 11)) (0.38.4)
Requirement already satisfied: MarkupSafe>=2.0.0rc2 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from jinja2==3.0.0->-r doc/requirements_doc.txt (line 2)) (2.1.2)
Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages (from setuptools_scm>=1.5.4->-r doc/../requirements_dev.txt (line 10)) (23.0)
Collecting typing-extensions
  Downloading typing_extensions-4.4.0-py3-none-any.whl (26 kB)
Collecting importlib-metadata
  Downloading importlib_metadata-6.0.0-py3-none-any.whl (21 kB)
Collecting tomli>=1.0.0
  Downloading tomli-2.0.1-py3-none-any.whl (12 kB)
Collecting zipp>=0.5
  Downloading zipp-3.11.0-py3-none-any.whl (6.6 kB)
Installing collected packages: cmake, zipp, typing-extensions, tomli, pybind11, numpy, jinja2, cython, importlib-metadata, setuptools_scm
  Attempting uninstall: jinja2
    Found existing installation: Jinja2 3.0.3
    Uninstalling Jinja2-3.0.3:
      Successfully uninstalled Jinja2-3.0.3
Successfully installed cmake-3.25.0 cython-0.29.33 importlib-metadata-6.0.0 jinja2-3.0.0 numpy-1.21.6 pybind11-2.10.3 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.4.0 zipp-3.11.0

[rtd-command-info] start-time: 2023-01-19T01:48:15.937651Z, end-time: 2023-01-19T01:48:20.093600Z, duration: 4, exit-code: 1
python ./setup.py install --force
TILEDB_PATH from env: ''
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
running install
running bdist_egg
/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools_scm/git.py:135: UserWarning: "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/checkouts/latest" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
ext_modules:  [<setuptools.extension.Extension('tiledb.libtiledb') at 0x7f49793f4b90>, <setuptools.extension.Extension('tiledb.main') at 0x7f4978938990>, <pybind11.setup_helpers.Pybind11Extension('tiledb.cc') at 0x7f4978938e90>]
tiledb_ext:  <setuptools.extension.Extension('tiledb.libtiledb') at 0x7f49793f4b90>
main_ext:  <setuptools.extension.Extension('tiledb.main') at 0x7f4978938990>
tiledb_cc_ext:  <pybind11.setup_helpers.Pybind11Extension('tiledb.cc') at 0x7f4978938e90>
tiledb_ext.library_dirs:  []
libtiledb_exists checking 'library_dirs': []
libtiledb_exists found: 'None'
Downloading TileDB package from 2.13.1...
Traceback (most recent call last):
  File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/http/client.py", line 558, in _get_chunk_left
    chunk_left = self._read_next_chunk_size()
  File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/http/client.py", line 525, in _read_next_chunk_size
    return int(line, 16)
ValueError: invalid literal for int() with base 16: b''

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/http/client.py", line 575, in _readall_chunked
    chunk_left = self._get_chunk_left()
  File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/http/client.py", line 560, in _get_chunk_left
    raise IncompleteRead(b'')
http.client.IncompleteRead: IncompleteRead(0 bytes read)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "./setup.py", line 806, in <module>
    "Programming Language :: Python :: 3.9",
  File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools/__init__.py", line 153, in setup
    return distutils.core.setup(**attrs)
  File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/core.py", line 148, in setup
    dist.run_commands()
  File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/dist.py", line 966, in run_commands
    self.run_command(cmd)
  File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools/command/install.py", line 67, in run
    self.do_egg_install()
  File "/home/docs/checkouts/readthedocs.org/user_builds/tiledb-inc-tiledb-py/envs/latest/lib/python3.7/site-packages/setuptools/command/install.py", line 109, in do_egg_install
    self.run_command('bdist_egg')
  File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/distutils/dist.py", line 985, in run_command
    cmd_obj.run()
  File "./setup.py", line 501, in run
    find_or_install_libtiledb(self)
  File "./setup.py", line 294, in find_or_install_libtiledb
    src_dir = download_libtiledb()
  File "./setup.py", line 158, in download_libtiledb
    with zipfile.ZipFile(io.BytesIO(urlopen(url).read())) as z:
  File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/http/client.py", line 468, in read
    return self._readall_chunked()
  File "/home/docs/.pyenv/versions/3.7.9/lib/python3.7/http/client.py", line 582, in _readall_chunked
    raise IncompleteRead(b''.join(value))
http.client.IncompleteRead: IncompleteRead(338786 bytes read)